Jason Michael Whitham

Works (4)

Updated: August 31st, 2023 05:00

2023 article

Mineral-Bound Trace Metals as Cofactors for Anaerobic Biological Nitrogen Fixation

Sheng, Y., Baars, O., Guo, D., Whitham, J., Srivastava, S., & Dong, H. (2023, April 28). Environmental Science & Technology, Vol. 4.

By: Y. Sheng *, O. Baars n , D. Guo *, J. Whitham n, S. Srivastava * & H. Dong *

author keywords: KEYWORDS; Archean ocean; Clostridium kluyveri; metal bioavailability; molybdenite; nitrogen fixation
MeSH headings : Nitrogen Fixation; Molybdenum; Anaerobiosis; Trace Elements; Nitrogenase / metabolism; Metals; Minerals; Nitrogen
topics (OpenAlex): Geochemistry and Elemental Analysis; Paleontology and Stratigraphy of Fossils; Microbial Fuel Cells and Bioremediation
TL;DR: The results show that C. kluyveri utilized mineral-associated metals to express nitrogenase genes and fix nitrogen, with profound implications for coevolution of the biosphere and geosphere. (via Semantic Scholar)
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13. Climate Action (Web of Science)
14. Life Below Water (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 29, 2023

2023 journal article

Survivability of Salmonella Typhimurium (ATCC 14208) and Listeria innocua (ATCC 51742) on lignocellulosic materials for paper packaging

Heliyon, 9(3), e14122.

By: J. Zwilling n , J. Whitham n, F. Zambrano  n, A. Pifano n, A. Grunden n , H. Jameel n, R. Venditti n , R. Gonzalez n 

author keywords: Lignocellulosic; Food safety; Paper; Survivability; Bacteria; Packaging
topics (OpenAlex): Nanocomposite Films for Food Packaging; Listeria monocytogenes in Food Safety; Food Safety and Hygiene
TL;DR: This research compared the growth and survivability of Salmonella Typhimurium and Listeria innocua on bleached and unbleached paper packaging materials to understand how bacteria proliferate and survive on lignocellulosic surfaces. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: May 9, 2023

2023 article

Trimming and Decontamination of Metagenomic Data can SignificantlyImpact Assembly and Binning Metrics, Phylogenomic and FunctionalAnalysis

Whitham, J. M., & Grunden, A. M. (2023, February 27). Current Bioinformatics, Vol. 18, pp. 428–439.

By: J. Whitham n & A. Grunden n 

author keywords: Trimming; decontamination; binning; assembly; metagenomics; MAG; QC; accessibility
topics (OpenAlex): Genomics and Phylogenetic Studies; Microbial Community Ecology and Physiology; Biofuel production and bioconversion
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 28, 2023

2021 article

Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform

Dow, E. G., Wood-Charlson, E. M., Biller, S. J., Paustian, T., Schirmer, A., Sheik, C. S., … Arkin, A. P. (2021, October 29). Frontiers in Education, Vol. 10.

By: E. Dow *, E. Wood-Charlson *, S. Biller *, T. Paustian *, A. Schirmer *, C. Sheik *, J. Whitham n, R. Krebs n ...

Contributors: E. Dow *, E. Wood-Charlson *, S. Biller *, T. Paustian *, A. Schirmer *, C. Sheik *, J. Whitham n, R. Krebs n ...

author keywords: computational biology; bioinformatics; data science; STEM education and learning; undergraduate education
topics (OpenAlex): Genetics, Bioinformatics, and Biomedical Research; Genomics and Phylogenetic Studies; Gene expression and cancer classification
TL;DR: The utility of KBase as a platform for bioinformatics education is demonstrated, and a set of modular, adaptable, and customizable instructional units for teaching concepts in Genomics, Metagenomics, Pangenomics, and Phylogenetics are presented. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, ORCID
Added: November 23, 2021

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