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Works (3)
Updated: April 5th, 2024 12:39
2021 journal article
Development of codominant SCAR markers to detect the <i>Pto , <i> Tm2 <sup>2 , <i>I3 and <i>Sw5 genes in tomato ( <i>Solanum lycopersicum )
Development of codominant SCAR markers to detect the Pto , . Plant Breeding, 140(2), 342–348.
Ed(s): K. Pillen
author keywords: I3; marker‐ assisted selection; Pto; SCAR marker; Sw5; Tm2(2)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: February 19, 2021
2021 journal article
Next-generation sequencing-based bulked segregant analysis without sequencing the parental genomes
G3 Genes|Genomes|Genetics, 12(2).
Ed(s): A. Lipka
author keywords: BSA-Seq; PyBSASeq; QTL; genomic region-trait association; structural variants
MeSH headings : Genome, Plant; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Polymorphism, Single Nucleotide; Quantitative Trait Loci
TL;DR:
The modified significant structural variant method allows the detection of such associations without sequencing the parental genomes, leading to further lower the sequencing cost and making BSA-Seq more accessible to the research community and more applicable to the species with a large genome.
(via Semantic Scholar)
open access via academic.oup.com (publisher PDF)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: December 6, 2021
2020 journal article
PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data
BMC BIOINFORMATICS, 21(1).
author keywords: Bulked segregant analysis; BSA-Seq; PyBSASeq; QTL; SNP-trait association
MeSH headings : Algorithms; Databases, Genetic; Oryza / genetics; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Software; Whole Genome Sequencing
TL;DR:
The significant SNP method allows the detection of SNP-trait associations at much lower sequencing coverage than the current methods, leading to ~ 80% lower sequencing cost and making BSA-Seq more accessible to the research community and more applicable to the species with a large genome.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: March 30, 2020
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