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Updated: April 11th, 2023 10:13

2022 journal article

Multitask neural networks for predicting bladder pressure with time series data

*BIOMEDICAL SIGNAL PROCESSING AND CONTROL*, *72*.

author keywords: Multitask neural networks; Recurrent neural networks; Time series data; Bladder dysfunction; Bladder contraction; Spectrogram

Source: Web Of Science

Added: November 29, 2021

2021 journal article

Deep Learning Approach to the Detection of Scattering Delay in Radar Images

*JOURNAL OF STATISTICAL THEORY AND PRACTICE*, *15*(1).

author keywords: Radar imaging; Dispersive targets; Classification; Convolutional neural network

Sources: Web Of Science, ORCID

Added: January 4, 2021

2021 journal article

Deep learning and regression approaches to forecasting blood glucose levels for type 1 diabetes

*BIOMEDICAL SIGNAL PROCESSING AND CONTROL*, *69*.

author keywords: Neural networks; Regression; Encoder decoder; Time series forecasting; Diabetes

Sources: Web Of Science, ORCID

Added: August 30, 2021

2021 review

Learning differential equation models from stochastic agent-based model simulations

[Review of ]. *JOURNAL OF THE ROYAL SOCIETY INTERFACE*, *18*(176).

author keywords: agent-based models; differential equations; equation learning; population dynamics; disease dynamics

Source: Web Of Science

Added: April 12, 2021

2021 article

Predicting Inter-individual Variability During Lipid Resuscitation of Bupivacaine Cardiotoxicity in Rats: A Virtual Population Modeling Study

McDaniel, M., Flores, K. B., & Akpa, B. S. (2021, July 19). *DRUGS IN R&D*, Vol. 7.

Sources: Web Of Science, ORCID

Added: July 20, 2021

2021 journal article

Stoichiometric Ecotoxicology for a Multisubstance World

*BIOSCIENCE*, *71*(2), 132–147.

author keywords: nutrient ratios; elemental imbalances; toxicity; ecotoxicological models; multiple stressors

Source: Web Of Science

Added: May 24, 2021

2021 journal article

Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis

*PLOS COMPUTATIONAL BIOLOGY*, *17*(6).

Source: Web Of Science

Added: July 19, 2021

2020 review

A tutorial review of mathematical techniques for quantifying tumor heterogeneity

[Review of ]. *MATHEMATICAL BIOSCIENCES AND ENGINEERING*, *17*(4), 3660–3709.

author keywords: cancer heterogeneity; mathematical oncology; tumor growth; glioblastoma multiforme; virtual populations; nonlinear mixed effects; spatiotemporal data; Bayesian estimation; generative; adversarial networks; non-parametric estimation; variational autoencoders; machine learning

Source: Web Of Science

Added: August 3, 2020

2020 journal article

Biologically-informed neural networks guide mechanistic modeling from sparse experimental data

*PLOS COMPUTATIONAL BIOLOGY*, *16*(12).

Source: Web Of Science

Added: January 4, 2021

2020 journal article

Deep learning-enabled analysis reveals distinct neuronal phenotypes induced by aging and cold-shock

*BMC BIOLOGY*, *18*(1).

author keywords: Deep learning; Convolutional neural networks; Neurodegeneration; Neuronal beading; Aging; Machine learning; Phenotyping; C; elegans

Source: Web Of Science

Added: October 26, 2020

2020 journal article

Learning Equations from Biological Data with Limited Time Samples

*BULLETIN OF MATHEMATICAL BIOLOGY*, *82*(9).

author keywords: Equation learning; Numerical differentiation; Sparse regression; Model selection; Partial differential equations; Parameter estimation; Population dynamics; Glioblastoma multiforme

Source: Web Of Science

Added: September 28, 2020

2020 journal article

Learning partial differential equations for biological transport models from noisy spatio-temporal data

author keywords: numerical differentiation; equation learning; sparse regression; partial differential equations; parameter estimation; biological transport

Source: Web Of Science

Added: March 30, 2020

2020 article

Lifelong Analysis of Key Aging Genes as Determinants of Lifespan in C. elegans

San Miguel, A., Ramirez, J., & Flores, K. (2020, April). *FASEB JOURNAL*, Vol. 34.

Source: Web Of Science

Added: October 12, 2020

2018 article

Automated Object Tracing for Biomedical Image Segmentation Using a Deep Convolutional Neural Network

*MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT IV*, Vol. 11073, pp. 686–694.

Source: Web Of Science

Added: August 12, 2019

2018 journal article

Detection of Bladder Contractions From the Activity of the External Urethral Sphincter in Rats Using Sparse Regression

*IEEE Transactions on Neural Systems and Rehabilitation Engineering*, *26*(8), 1636–1644.

author keywords: LASSO; neural stimulation; bladder dysfunction; spectrogram

Sources: Crossref, ORCID

Added: July 20, 2019

2018 journal article

Estimating intratumoral heterogeneity from spatiotemporal data

*JOURNAL OF MATHEMATICAL BIOLOGY*, *77*(6-7), 1999–2022.

author keywords: Glioblastoma multiforme; Random differential equation; Parameter estimation

Source: Web Of Science

Added: December 17, 2018

2018 journal article

Forecasting and Uncertainty Quantification Using a Hybrid of Mechanistic and Non-mechanistic Models for an Age-Structured Population Model

*Bulletin of Mathematical Biology*, *80*(6), 1578–1595.

author keywords: State space reconstruction; Uncertainty quantification; Structured population model; Forecasting

Sources: Web Of Science, Crossref, ORCID

Added: August 6, 2018

2017 journal article

Continuous Structured Population Models for Daphnia magna

*Bulletin of Mathematical Biology*, *79*(11), 2627–2648.

author keywords: Continuous structured population models; Inverse problems; Generalized least squares; Model selection; Information content; Residual plots

Source: Crossref

Added: July 20, 2019

2017 journal article

Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model

*Inverse Problems in Science and Engineering*, *26*(2), 257–279.

author keywords: Structured population model; aggregate data; inverse problem; PDEs; prion; General biology and biomathematics

Source: Crossref

Added: July 20, 2019

2017 journal article

Hybrid modeling and prediction of dynamical systems

*PLoS Computational Biology*, *13*(7).

Source: NC State University Libraries

Added: August 6, 2018

2017 journal article

Statistical error model comparison for logistic growth of green algae (Raphidocelis subcapitata)

*Applied Mathematics Letters*, *64*, 213–222.

author keywords: Algae growth models; Parameter estimation; Uncertainty quantification; Asymptotic theory

Sources: Crossref, Web Of Science

Added: August 6, 2018

2016 journal article

Build to understand: synthetic approaches to biology

*Integrative Biology*, *8*(4), 394–408.

Source: Crossref

Added: July 20, 2019

2016 journal article

On analytical and numerical approaches to division and label structured population models

*APPLIED MATHEMATICS LETTERS*, *60*, 81–88.

author keywords: Division-structured population model; Heterogeneous cell populations; Protein dynamics

Source: Web Of Science

Added: August 6, 2018

2016 journal article

Validation of a mathematical model for green algae (Raphidocelis Subcapitata) growth and implications for a coupled dynamical system with Daphnia magna

*Applied Sciences-Basel*, *6*(5).

Source: NC State University Libraries

Added: August 6, 2018

2015 journal article

Correlation of parameter estimators for models admitting multiple parametrizations

*International Journal of Pure and Applied Mathematics*, *105*(3), 497–522.

Source: Crossref

Added: August 18, 2019

2015 journal article

Estimation of time-varying mortality rates using continuous models for Daphnia magna

*APPLIED MATHEMATICS LETTERS*, *44*, 12–16.

author keywords: Structured population model; Leslie matrix model; Sinko-Streifer model; Daphnia magna; Time-dependent mortality rate

Sources: Web Of Science, ORCID

Added: August 6, 2018

2015 journal article

Immuno-modulatory strategies for reduction of HIV reservoir cells

*JOURNAL OF THEORETICAL BIOLOGY*, *372*, 146–158.

author keywords: Immune response; Mathematical model; Inverse problem; Stability analysis

Source: Web Of Science

Added: August 6, 2018

2015 journal article

Optimal design for minimizing uncertainty in dynamic equilibrium systems

*Eurasian Journal of Mathematical and Computer Applications*, *3*(1), 23–47.

Source: NC State University Libraries

Added: July 10, 2019

2015 journal article

Optimal design of non-equilibrium experiments for genetic network interrogation

*APPLIED MATHEMATICS LETTERS*, *40*, 84–89.

author keywords: Optimal experimental design; Inverse problem; Uncertainty analysis; Brome mosaic virus; Synthetic biology; Genetic networks

Source: Web Of Science

Added: August 6, 2018

2015 journal article

Statistical validation of structured population models for Daphnia magna

*Mathematical Biosciences*, *266*, 73–84.

author keywords: Sensitivity analysis; Structured population model; Uncertainty quantification; Density-dependence; Multi-scale data; Daphnia magna

Sources: Web Of Science, ORCID, Crossref

Added: August 6, 2018

2015 journal article

The genomes of two key bumblebee species with primitive eusocial organization

*Genome Biology*, *16*.

Source: NC State University Libraries

Added: August 6, 2018

2015 journal article

UNCERTAINTY QUANTIFICATION IN MODELING HIV VIRAL MECHANICS

*MATHEMATICAL BIOSCIENCES AND ENGINEERING*, *12*(5), 937–964.

Source: Web Of Science

Added: August 6, 2018

2014 conference paper

Uncertainty quantification for a model of HIV-1 patient response to antiretroviral therapy interruptions

*2014 american control conference (acc)*, 2753–2758.

Source: NC State University Libraries

Added: August 6, 2018

2013 journal article

A mathematical model of RNA3 recruitment in the replication cycle of Brome Mosaic Virus

*International Journal of Pure and Applied Mathematics*, *89*(2), 251–274.

Source: Crossref

Added: August 18, 2019

2013 journal article

A structured population modeling framework for quantifying and predicting gene expression noise in flow cytometry data

*APPLIED MATHEMATICS LETTERS*, *26*(7), 794–798.

author keywords: Structured population models; Distributed parameters; Gene regulatory networks; Gene expression noise; Synthetic biology

Source: Web Of Science

Added: August 6, 2018

2013 journal article

DATA AND IMPLICATION BASED COMPARISON OF TWO CHRONIC MYELOID LEUKEMIA MODELS

*MATHEMATICAL BIOSCIENCES AND ENGINEERING*, *10*(5-6), 1501–1518.

author keywords: Chronic myeloid leukemia; clinical data; drug resistance; cancer modeling

Source: Web Of Science

Added: August 6, 2018

2013 journal article

The Role of Methylation of DNA in Environmental Adaptation

*Integrative and Comparative Biology*, *53*(2), 359–372.

Source: Crossref

Added: July 20, 2019

2012 journal article

Genome-wide association between DNA methylation and alternative splicing in an invertebrate

*BMC Genomics*, *13*(1), 480.

Source: Crossref

Added: July 20, 2019

2011 journal article

Deciphering a methylome: what can we read into patterns of DNA methylation?

*Journal of Experimental Biology*, *214*(19), 3155–3163.

author keywords: CG methylation; DNA sequencing; genome analysis; honeybee genome; epigenetics

Source: Crossref

Added: July 20, 2019

2010 journal article

The random walk of Azospirillum brasilense

*Journal of Biological Dynamics*, *4*(1), 71–85.

Source: Crossref

Added: July 20, 2019