@article{warrier_rutter_flores_2022, title={Multitask neural networks for predicting bladder pressure with time series data}, volume={72}, ISSN={["1746-8108"]}, DOI={10.1016/j.bspc.2021.103298}, journal={BIOMEDICAL SIGNAL PROCESSING AND CONTROL}, author={Warrier, Sangeeta and Rutter, Erica M. and Flores, Kevin B.}, year={2022}, month={Feb} }
 @article{lagergren_flores_gilman_tsynkov_2021, title={Deep Learning Approach to the Detection of Scattering Delay in Radar Images}, volume={15}, ISSN={["1559-8616"]}, DOI={10.1007/s42519-020-00149-w}, number={1}, journal={JOURNAL OF STATISTICAL THEORY AND PRACTICE}, author={Lagergren, John and Flores, Kevin and Gilman, Mikhail and Tsynkov, Semyon}, year={2021}, month={Mar} }
 @article{zhang_flores_tran_2021, title={Deep learning and regression approaches to forecasting blood glucose levels for type 1 diabetes}, volume={69}, ISSN={["1746-8108"]}, DOI={10.1016/j.bspc.2021.102923}, journal={BIOMEDICAL SIGNAL PROCESSING AND CONTROL}, author={Zhang, Meng and Flores, Kevin B. and Tran, Hien T.}, year={2021}, month={Aug} }
 @misc{nardini_baker_simpson_flores_2021, title={Learning differential equation models from stochastic agent-based model simulations}, volume={18}, ISSN={["1742-5662"]}, DOI={10.1098/rsif.2020.0987}, number={176}, journal={JOURNAL OF THE ROYAL SOCIETY INTERFACE}, author={Nardini, John T. and Baker, Ruth E. and Simpson, Matthew J. and Flores, Kevin B.}, year={2021}, month={Mar} }
 @article{mcdaniel_flores_akpa_2021, title={Predicting Inter-individual Variability During Lipid Resuscitation of Bupivacaine Cardiotoxicity in Rats: A Virtual Population Modeling Study}, volume={7}, ISSN={["1179-6901"]}, url={https://doi.org/10.1007/s40268-021-00353-4}, DOI={10.1007/s40268-021-00353-4}, journal={DRUGS IN R&D}, publisher={Springer Science and Business Media LLC}, author={McDaniel, Matthew and Flores, Kevin B. and Akpa, Belinda S.}, year={2021}, month={Jul} }
 @article{peace_frost_wagner_danger_accolla_antczak_brooks_costello_everett_flores_et al._2021, title={Stoichiometric Ecotoxicology for a Multisubstance World}, volume={71}, ISSN={["1525-3244"]}, DOI={10.1093/biosci/biaa160}, number={2}, journal={BIOSCIENCE}, author={Peace, Angela and Frost, Paul C. and Wagner, Nicole D. and Danger, Michael and Accolla, Chiara and Antczak, Philipp and Brooks, Bryan W. and Costello, David M. and Everett, Rebecca A. and Flores, Kevin B. and et al.}, year={2021}, month={Feb}, pages={132–147} }
 @article{nardini_stolz_flores_harrington_byrne_2021, title={Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis}, volume={17}, ISSN={["1553-7358"]}, DOI={10.1371/journal.pcbi.1009094}, number={6}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Nardini, John T. and Stolz, Bernadette J. and Flores, Kevin B. and Harrington, Heather A. and Byrne, Helen M.}, year={2021}, month={Jun} }
 @misc{everett_flores_henscheid_lagergren_larripa_li_nardini_nguyen_pitman_rutter_2020, title={A tutorial review of mathematical techniques for quantifying tumor heterogeneity}, volume={17}, ISSN={["1551-0018"]}, DOI={10.3934/mbe.2020207}, number={4}, journal={MATHEMATICAL BIOSCIENCES AND ENGINEERING}, author={Everett, Rebecca and Flores, Kevin B. and Henscheid, Nick and Lagergren, John and Larripa, Kamila and Li, Ding and Nardini, John T. and Nguyen, Phuong T. T. and Pitman, E. Bruce and Rutter, Erica M.}, year={2020}, pages={3660–3709} }
 @article{lagergren_nardini_baker_simpson_flores_2020, title={Biologically-informed neural networks guide mechanistic modeling from sparse experimental data}, volume={16}, ISSN={["1553-7358"]}, DOI={10.1371/journal.pcbi.1008462}, number={12}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Lagergren, John H. and Nardini, John T. and Baker, Ruth E. and Simpson, Matthew J. and Flores, Kevin B.}, year={2020}, month={Dec} }
 @article{saberi-bosari_flores_san-miguel_2020, title={Deep learning-enabled analysis reveals distinct neuronal phenotypes induced by aging and cold-shock}, volume={18}, ISSN={["1741-7007"]}, DOI={10.1186/s12915-020-00861-w}, number={1}, journal={BMC BIOLOGY}, author={Saberi-Bosari, Sahand and Flores, Kevin B. and San-Miguel, Adriana}, year={2020}, month={Sep} }
 @article{nardini_lagergren_hawkins-daarud_curtin_morris_rutter_swanson_flores_2020, title={Learning Equations from Biological Data with Limited Time Samples}, volume={82}, ISSN={["1522-9602"]}, DOI={10.1007/s11538-020-00794-z}, number={9}, journal={BULLETIN OF MATHEMATICAL BIOLOGY}, author={Nardini, John T. and Lagergren, John H. and Hawkins-Daarud, Andrea and Curtin, Lee and Morris, Bethan and Rutter, Erica M. and Swanson, Kristin R. and Flores, Kevin B.}, year={2020}, month={Sep} }
 @article{lagergren_nardini_michael lavigne_rutter_flores_2020, title={Learning partial differential equations for biological transport models from noisy spatio-temporal data}, volume={476}, ISSN={["1471-2946"]}, DOI={10.1098/rspa.2019.0800}, number={2234}, journal={PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES}, author={Lagergren, John H. and Nardini, John T. and Michael Lavigne, G. and Rutter, Erica M. and Flores, Kevin B.}, year={2020}, month={Feb} }
 @article{san miguel_ramirez_flores_2020, title={Lifelong Analysis of Key Aging Genes as Determinants of Lifespan in <it>C</it>. <it>elegans</it>}, volume={34}, ISSN={["1530-6860"]}, DOI={10.1096/fasebj.2020.34.s1.00160}, journal={FASEB JOURNAL}, author={San Miguel, Adriana and Ramirez, Javier and Flores, Kevin}, year={2020}, month={Apr} }
 @article{rutter_lagergren_flores_2018, title={Automated Object Tracing for Biomedical Image Segmentation Using a Deep Convolutional Neural Network}, volume={11073}, ISBN={["978-3-030-00936-6"]}, ISSN={["1611-3349"]}, DOI={10.1007/978-3-030-00937-3_78}, journal={MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT IV}, author={Rutter, Erica M. and Lagergren, John H. and Flores, Kevin B.}, year={2018}, pages={686–694} }
 @article{rutter_langdale_hokanson_hamilton_tran_grill_flores_2018, title={Detection of Bladder Contractions From the Activity of the External Urethral Sphincter in Rats Using Sparse Regression}, volume={26}, ISSN={1534-4320 1558-0210}, url={http://dx.doi.org/10.1109/tnsre.2018.2854675}, DOI={10.1109/tnsre.2018.2854675}, number={8}, journal={IEEE Transactions on Neural Systems and Rehabilitation Engineering}, publisher={Institute of Electrical and Electronics Engineers (IEEE)}, author={Rutter, Erica M. and Langdale, Christopher L. and Hokanson, James A. and Hamilton, Franz and Tran, Hien and Grill, Warren M. and Flores, Kevin B.}, year={2018}, month={Aug}, pages={1636–1644} }
 @article{rutter_banks_flores_2018, title={Estimating intratumoral heterogeneity from spatiotemporal data}, volume={77}, ISSN={["1432-1416"]}, DOI={10.1007/s00285-018-1238-6}, number={6-7}, journal={JOURNAL OF MATHEMATICAL BIOLOGY}, author={Rutter, E. M. and Banks, H. T. and Flores, K. B.}, year={2018}, month={Dec}, pages={1999–2022} }
 @article{lagergren_reeder_hamilton_smith_flores_2018, title={Forecasting and Uncertainty Quantification Using a Hybrid of Mechanistic and Non-mechanistic Models for an Age-Structured Population Model}, volume={80}, ISSN={0092-8240 1522-9602}, url={http://dx.doi.org/10.1007/s11538-018-0421-7}, DOI={10.1007/s11538-018-0421-7}, number={6}, journal={Bulletin of Mathematical Biology}, publisher={Springer Nature}, author={Lagergren, John and Reeder, Amanda and Hamilton, Franz and Smith, Ralph C. and Flores, Kevin B.}, year={2018}, month={Apr}, pages={1578–1595} }
 @article{rutter_banks_leblanc_flores_2017, title={Continuous Structured Population Models for Daphnia magna}, volume={79}, ISSN={0092-8240 1522-9602}, url={http://dx.doi.org/10.1007/s11538-017-0344-8}, DOI={10.1007/s11538-017-0344-8}, number={11}, journal={Bulletin of Mathematical Biology}, publisher={Springer Nature}, author={Rutter, Erica M. and Banks, H. T. and LeBlanc, Gerald A. and Flores, Kevin B.}, year={2017}, month={Sep}, pages={2627–2648} }
 @article{banks_flores_langlois_serio_sindi_2017, title={Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model}, volume={26}, ISSN={1741-5977 1741-5985}, url={http://dx.doi.org/10.1080/17415977.2017.1316498}, DOI={10.1080/17415977.2017.1316498}, number={2}, journal={Inverse Problems in Science and Engineering}, publisher={Informa UK Limited}, author={Banks, H. T. and Flores, Kevin B. and Langlois, Christine R. and Serio, Tricia R. and Sindi, Suzanne S.}, year={2017}, month={Apr}, pages={257–279} }
 @article{hamilton_lloyd_flores_2017, title={Hybrid modeling and prediction of dynamical systems}, volume={13}, number={7}, journal={PLoS Computational Biology}, author={Hamilton, F. and Lloyd, A. L. and Flores, K. B.}, year={2017} }
 @article{banks_collins_flores_pershad_stemkovski_stephenson_2017, title={Statistical error model comparison for logistic growth of green algae (Raphidocelis subcapitata)}, volume={64}, ISSN={0893-9659}, url={http://dx.doi.org/10.1016/J.AML.2016.09.006}, DOI={10.1016/J.AML.2016.09.006}, journal={Applied Mathematics Letters}, publisher={Elsevier BV}, author={Banks, H.T. and Collins, Elizabeth and Flores, Kevin and Pershad, Prayag and Stemkovski, Michael and Stephenson, Lyric}, year={2017}, month={Feb}, pages={213–222} }
 @article{wang_wu_flores_lai_wang_2016, title={Build to understand: synthetic approaches to biology}, volume={8}, ISSN={1757-9694 1757-9708}, url={http://dx.doi.org/10.1039/c5ib00252d}, DOI={10.1039/c5ib00252d}, abstractNote={In this review we discuss how synthetic biology facilitates the task of investigating genetic circuits that are observed in naturally occurring biological systems.}, number={4}, journal={Integrative Biology}, publisher={Oxford University Press (OUP)}, author={Wang, Le-Zhi and Wu, Fuqing and Flores, Kevin and Lai, Ying-Cheng and Wang, Xiao}, year={2016}, pages={394–408} }
 @article{banks_flores_sindi_2016, title={On analytical and numerical approaches to division and label structured population models}, volume={60}, ISSN={["0893-9659"]}, DOI={10.1016/j.aml.2016.04.009}, journal={APPLIED MATHEMATICS LETTERS}, author={Banks, H. T. and Flores, Kevin B. and Sindi, Suzanne S.}, year={2016}, month={Oct}, pages={81–88} }
 @article{stemkovski_baraldi_flores_banks_2016, title={Validation of a mathematical model for green algae (Raphidocelis Subcapitata) growth and implications for a coupled dynamical system with Daphnia magna}, volume={6}, number={5}, journal={Applied Sciences-Basel}, author={Stemkovski, M. and Baraldi, R. and Flores, K. B. and Banks, H. T.}, year={2016} }
 @article{adoteye_baraldi_flores_nardini_banks_thompson_2015, title={Correlation of parameter estimators for models admitting multiple parametrizations}, volume={105}, ISSN={1311-8080 1314-3395}, url={http://dx.doi.org/10.12732/ijpam.v105i3.16}, DOI={10.12732/ijpam.v105i3.16}, number={3}, journal={International Journal of Pure and Applied Mathematics}, publisher={Academic Publications}, author={Adoteye, K and Baraldi, R and Flores, K and Nardini, J and Banks, HT and Thompson, WC}, year={2015}, month={Dec}, pages={497–522} }
 @article{adoteye_banks_flores_leblanc_2015, title={Estimation of time-varying mortality rates using continuous models for Daphnia magna}, volume={44}, ISSN={["1873-5452"]}, DOI={10.1016/j.aml.2014.12.014}, journal={APPLIED MATHEMATICS LETTERS}, author={Adoteye, Kaska and Banks, H. T. and Flores, Kevin B. and LeBlanc, Gerald A.}, year={2015}, month={Jun}, pages={12–16} }
 @article{banks_flores_hu_rosenberg_buzon_yu_lichterfeld_2015, title={Immuno-modulatory strategies for reduction of HIV reservoir cells}, volume={372}, ISSN={["1095-8541"]}, DOI={10.1016/j.jtbi.2015.02.006}, journal={JOURNAL OF THEORETICAL BIOLOGY}, author={Banks, H. T. and Flores, Kevin B. and Hu, Shuhua and Rosenberg, Eric and Buzon, Maria and Yu, Xu and Lichterfeld, Matthias}, year={2015}, month={May}, pages={146–158} }
 @article{banks_baraldi_flores_2015, title={Optimal design for minimizing uncertainty in dynamic equilibrium systems}, volume={3}, number={1}, journal={Eurasian Journal of Mathematical and Computer Applications}, author={Banks, H.T. and Baraldi, R. and Flores, K.B.}, year={2015}, pages={23–47} }
 @article{adoteye_banks_flores_2015, title={Optimal design of non-equilibrium experiments for genetic network interrogation}, volume={40}, ISSN={["0893-9659"]}, DOI={10.1016/j.aml.2014.09.013}, journal={APPLIED MATHEMATICS LETTERS}, author={Adoteye, Kaska and Banks, H. T. and Flores, Kevin B.}, year={2015}, month={Feb}, pages={84–89} }
 @article{adoteye_banks_cross_eytcheson_flores_leblanc_nguyen_ross_smith_stemkovski_et al._2015, title={Statistical validation of structured population models for Daphnia magna}, volume={266}, ISSN={0025-5564}, url={http://dx.doi.org/10.1016/j.mbs.2015.06.003}, DOI={10.1016/j.mbs.2015.06.003}, journal={Mathematical Biosciences}, publisher={Elsevier BV}, author={Adoteye, Kaska and Banks, H.T. and Cross, Karissa and Eytcheson, Stephanie and Flores, Kevin B. and LeBlanc, Gerald A. and Nguyen, Timothy and Ross, Chelsea and Smith, Emmaline and Stemkovski, Michael and et al.}, year={2015}, month={Aug}, pages={73–84} }
 @article{sadd_barribeau_bloch_graaf_dearden_elsik_gadau_grimmelikhuijzen_hasselmann_lozier_et al._2015, title={The genomes of two key bumblebee species with primitive eusocial organization}, volume={16}, journal={Genome Biology}, author={Sadd, B. M. and Barribeau, S. M. and Bloch, G. and Graaf, D. C. and Dearden, P. and Elsik, C. G. and Gadau, J. and Grimmelikhuijzen, C. J. P. and Hasselmann, M. and Lozier, J. D. and et al.}, year={2015} }
 @article{banks_baraldi_cross_flores_mcchesney_poag_thorpe_2015, title={UNCERTAINTY QUANTIFICATION IN MODELING HIV VIRAL MECHANICS}, volume={12}, ISSN={["1551-0018"]}, DOI={10.3934/mbe.2015.12.937}, number={5}, journal={MATHEMATICAL BIOSCIENCES AND ENGINEERING}, author={Banks, H. T. and Baraldi, Robert and Cross, Karissa and Flores, Kevin and Mcchesney, Christina and Poag, Laura and Thorpe, Emma}, year={2015}, month={Oct}, pages={937–964} }
 @inproceedings{baraldi_cross_mcchesney_poag_thorpe_flores_banks_2014, title={Uncertainty quantification for a model of HIV-1 patient response to antiretroviral therapy interruptions}, booktitle={2014 american control conference (acc)}, author={Baraldi, R. and Cross, K. and McChesney, C. and Poag, L. and Thorpe, E. and Flores, K. B. and Banks, H. T.}, year={2014}, pages={2753–2758} }
 @article{huffman_link_nardini_poag_flores_banks_blasco_jungfleisch_diez_2013, title={A mathematical model of RNA3 recruitment in the replication cycle of Brome Mosaic Virus}, volume={89}, ISSN={1311-8080 1314-3395}, url={http://dx.doi.org/10.12732/ijpam.v89i2.9}, DOI={10.12732/ijpam.v89i2.9}, number={2}, journal={International Journal of Pure and Applied Mathematics}, publisher={Academic Publications}, author={Huffman, T. and Link, K. and Nardini, J. and Poag, L. and Flores, K. and Banks, H.T. and Blasco, B. and Jungfleisch, J. and Diez, J.}, year={2013}, month={Dec}, pages={251–274} }
 @article{flores_2013, title={A structured population modeling framework for quantifying and predicting gene expression noise in flow cytometry data}, volume={26}, ISSN={["0893-9659"]}, DOI={10.1016/j.aml.2013.03.003}, number={7}, journal={APPLIED MATHEMATICS LETTERS}, author={Flores, Kevin B.}, year={2013}, month={Jul}, pages={794–798} }
 @article{everett_zhao_flores_kuang_2013, title={DATA AND IMPLICATION BASED COMPARISON OF TWO CHRONIC MYELOID LEUKEMIA MODELS}, volume={10}, ISSN={["1551-0018"]}, DOI={10.3934/mbe.2013.10.1501}, number={5-6}, journal={MATHEMATICAL BIOSCIENCES AND ENGINEERING}, author={Everett, R. A. and Zhao, Y. and Flores, K. B. and Kuang, Y.}, year={2013}, pages={1501–1518} }
 @article{flores_wolschin_amdam_2013, title={The Role of Methylation of DNA in Environmental Adaptation}, volume={53}, ISSN={1540-7063 1557-7023}, url={http://dx.doi.org/10.1093/icb/ict019}, DOI={10.1093/icb/ict019}, number={2}, journal={Integrative and Comparative Biology}, publisher={Oxford University Press (OUP)}, author={Flores, K. B. and Wolschin, F. and Amdam, G. V.}, year={2013}, month={Apr}, pages={359–372} }
 @article{flores_wolschin_corneveaux_allen_huentelman_amdam_2012, title={Genome-wide association between DNA methylation and alternative splicing in an invertebrate}, volume={13}, ISSN={1471-2164}, url={http://dx.doi.org/10.1186/1471-2164-13-480}, DOI={10.1186/1471-2164-13-480}, number={1}, journal={BMC Genomics}, publisher={Springer Nature}, author={Flores, Kevin and Wolschin, Florian and Corneveaux, Jason J and Allen, April N and Huentelman, Matthew J and Amdam, Gro V}, year={2012}, pages={480} }
 @article{flores_amdam_2011, title={Deciphering a methylome: what can we read into patterns of DNA methylation?}, volume={214}, ISSN={0022-0949 1477-9145}, url={http://dx.doi.org/10.1242/jeb.059741}, DOI={10.1242/jeb.059741}, number={19}, journal={Journal of Experimental Biology}, publisher={The Company of Biologists}, author={Flores, K. B. and Amdam, G. V.}, year={2011}, month={Sep}, pages={3155–3163} }
 @article{flores_hadeler_2010, title={The random walk of Azospirillum brasilense}, volume={4}, ISSN={1751-3758 1751-3766}, url={http://dx.doi.org/10.1080/17513750902773914}, DOI={10.1080/17513750902773914}, number={1}, journal={Journal of Biological Dynamics}, publisher={Informa UK Limited}, author={Flores, Kevin and Hadeler, K. P.}, year={2010}, month={Jan}, pages={71–85} }