Works (396)

Updated: April 14th, 2023 05:18

2023 journal article

Development of a Versatile Method to Construct Direct Electron Transfer-Type Enzyme Complexes Employing SpyCatcher/SpyTag System

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 24(3).

By: T. Yanase*, J. Okuda-Shimazaki, R. Asano, K. Ikebukuro, K. Sode & W. Tsugawa

author keywords: biosensors; direct electron transfer; SpyCatcher; SpyTag; glucose dehydrogenase; d-amino acid oxidase; l-lactate oxidase; biomedical engineering
Sources: ORCID, Web Of Science
Added: January 18, 2023

2023 journal article

Development of an Anti-Idiotype Aptamer-Based Electrochemical Sensor for a Humanized Therapeutic Antibody Monitoring

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 24(6).

By: M. Nagata n, J. Lee n, T. Saito*, K. Ikebukuro* & K. Sode

author keywords: aptamers; bevacizumab; biosensors; therapeutic monoclonal antibody; point-of-care testing
Sources: ORCID, Web Of Science
Added: March 11, 2023

2023 journal article

Surface area independent response of closed bipolar electrodes

Sensors and Actuators Reports.

By: D. Probst, I. Lee, J. Dick & K. Sode

Source: ORCID
Added: January 3, 2023

2022 journal article

A Thiol-reactive Phenazine Ethosulfate - A Novel Redox Mediator for Quasi-direct Electron-transfer-type Sensors

SENSORS AND MATERIALS, 34(6), 2105–2124.

By: M. Fitriana, K. Hiraka, K. Ikebukuro, K. Sode & W. Tsugawa

author keywords: thiol-reactive phenazine ethosulfate; quasi-direct electron transfer; redox probe; enzyme modification; lactate oxidase; electrochemical enzyme sensor; biomedical engineering
Sources: Web Of Science, ORCID
Added: June 27, 2022

2022 journal article

An Amine-Reactive Phenazine Ethosulfate (arPES)-A Novel Redox Probe for Electrochemical Aptamer-Based Sensor

SENSORS, 22(5).

By: M. Nagata*, J. Lee*, S. Henley*, K. Ikebukuro* & K. Sode

author keywords: aptamer; redox probe; amine-reactive phenazine ethosulfate; electrochemical sensor
Sources: ORCID, Web Of Science
Added: February 25, 2022

2022 journal article

Clinical Study of a High Accuracy Green Design Blood Glucose Monitor Using an Innovative Optical Transmission Absorbance System

JOURNAL OF DIABETES SCIENCE AND TECHNOLOGY, 16(5), 1069–1075.

By: T. Moriuchi*, Y. Otaki*, H. Satou*, F. Chai*, Y. Hayashida*, R. Aikawa*, T. Sugiyama*, K. Sode

author keywords: accuracy; blood glucose monitoring; green design; green diabetes initiative; optical BGM
Sources: Web Of Science, ORCID
Added: January 30, 2023

2022 journal article

Development of a DNA aptamer that binds to the complementarity-determining region of therapeutic monoclonal antibody and affinity improvement induced by pH-change for sensitive detection

BIOSENSORS & BIOELECTRONICS, 203.

By: T. Saito*, Y. Shimizu*, K. Tsukakoshi*, K. Abe*, J. Lee*, K. Ueno*, R. Asano*, B. Jones* ...

author keywords: DNA aptamer; Therapeutic antibody; Antibody-aptamer complex; Affinity improvement; Electrochemical biosensor
Sources: Web Of Science, ORCID
Added: July 11, 2022

2022 journal article

Development of a POCT type insulin sensor employing anti-insulin single chain variable fragment based on faradaic electrochemical impedance spectroscopy under single frequency measurement

Biosensors and Bioelectronics, 200, 113901.

By: M. Khanwalker n, R. Fujita*, J. Lee n, E. Wilson n, K. Ito*, R. Asano*, K. Ikebukuro*, J. LaBelle*, K. Sode

author keywords: Insulin; Single chain variable fragment (scFv); Faradaic electrochemical impedance; spectroscopy; Point-of-care testing (POCT) sensor; Single frequency measurement
Source: ORCID
Added: December 21, 2021

2022 journal article

Development of an electrochemical impedance spectroscopy based biosensor for detection of ubiquitin C-Terminal hydrolase L1

BIOSENSORS & BIOELECTRONICS, 208.

By: J. Lee*, B. Kane, M. Khanwalker & K. Sode

author keywords: Traumatic brain injury; Ubiquitin C-Terminal hydrolase L1 (UCH-L1); Electrochemical impedance spectroscopy; Point-of-care testing; Immunosensor
Sources: ORCID, Web Of Science
Added: March 30, 2022

2022 journal article

In Vitro Continuous 3 Months Operation of Direct Electron Transfer Type Open Circuit Potential Based Glucose Sensor: Heralding the Next CGM Sensor

JOURNAL OF DIABETES SCIENCE AND TECHNOLOGY, 16(5), 1107–1113.

By: I. Lee n, T. Wakako*, K. Ikebukuro* & K. Sode

author keywords: FADGDH; direct electron transfer (DET); 3(rd) generation glucose sensor; continuous glucose monitoring (CGM); Open circuit potential (OCP); long-term operation
Sources: ORCID, Web Of Science
Added: April 27, 2022

2022 journal article

In Vitro Evaluation of Miniaturized Amperometric Enzyme Sensor Based on the Direct Electron Transfer Principle for Continuous Glucose Monitoring

Journal of Diabetes Science and Technology, 1, 193229682110706.

By: Y. Inoue*, Y. Kusaka*, K. Shinozaki*, I. Lee* & K. Sode

author keywords: FADGDH; direct electron transfer (DET); third-generation glucose sensor; continuous glucose monitoring (CGM)
Source: ORCID
Added: January 7, 2022

2022 journal article

Light-induced production of isobutanol and 3-methyl-1-butanol by metabolically engineered cyanobacteria

MICROBIAL CELL FACTORIES, 21(1).

By: S. Kobayashi*, S. Atsumi*, K. Ikebukuro*, K. Sode & R. Asano*

author keywords: Biofuel; CcaS/CcaR two-component system; Cyanobacteria; Isobutanol; Light-regulated gene expression; Metabolic regulation; Synechocystis sp. PCC 6803; 3-methyl-1-butanol
Sources: Web Of Science, ORCID
Added: January 18, 2022

2022 journal article

Microgravity environment grown crystal structure information based engineering of direct electron transfer type glucose dehydrogenase

COMMUNICATIONS BIOLOGY, 5(1).

By: J. Okuda-Shimazaki*, H. Yoshida*, I. Lee*, K. Kojima*, N. Suzuki*, W. Tsugawa*, M. Yamada*, K. Inaka*, H. Tanaka*, K. Sode

Sources: ORCID, Web Of Science
Added: December 7, 2022

2022 journal article

Structure of lactate oxidase from Enterococcus hirae revealed new aspects of active site loop function: Product-inhibition mechanism and oxygen gatekeeper

PROTEIN SCIENCE, 31(10).

By: K. Hiraka*, H. Yoshida*, W. Tsugawa*, R. Asano*, J. La Belle*, K. Ikebukuro*, K. Sode

author keywords: crystal structure; dehydrogenase; flavin; lactate oxidase; lactate sensor; l-lactate; oxidase; oxygen; product inhibition; substrate inhibition
Sources: ORCID, Web Of Science
Added: September 22, 2022

2022 journal article

Transient potentiometry based d-serine sensor using engineered d-amino acid oxidase showing quasi-direct electron transfer property

Biosensors and Bioelectronics, 200, 113927.

By: S. Takamatsu*, I. Lee n, J. Lee n, R. Asano*, W. Tsugawa*, K. Ikebukuro*, J. Dick*, K. Sode

author keywords: D-Serine; Transient potentiometry; Open circuit potential; D-Amino acid Oxidase; Direct electron transfer
Source: ORCID
Added: December 30, 2021

2021 journal article

A Green Light-Regulated T7 RNA Polymerase Gene Expression System for Cyanobacteria

Marine Biotechnology, 23(1), 31–38.

By: C. Shono*, D. Ariyanti*, K. Abe*, Y. Sakai*, I. Sakamoto*, K. Tsukakoshi*, K. Sode, K. Ikebukuro*

author keywords: T7 RNA polymerase; Green light-regulated gene expression system; Light-regulated bioprocesses; CcaS; CcaR; Synechocystissp; PCC6803; Cyanobacteria
Source: ORCID
Added: October 9, 2020

2021 journal article

A self-powered glucose sensor based on BioCapacitor principle with micro-sized enzyme anode employing direct electron transfer type FADGDH

JOURNAL OF PHYSICS-ENERGY, 3(3).

By: I. Lee n, J. Okuda-Shimazaki n, W. Tsugawa*, K. Ikebukuro* & K. Sode

author keywords: micro-sized electrode; biofuel cell; BioCapacitor; self-powered; glucose sensor; implantable artificial pancreas; direct electron transfer
Sources: ORCID, Web Of Science
Added: March 14, 2021

2021 journal article

Artificial complementary chromatic acclimation gene expression system in Escherichia coli

MICROBIAL CELL FACTORIES, 20(1).

By: D. Ariyanti*, K. Ikebukuro* & K. Sode

author keywords: Artificial complementary chromatic acclimation; Gene expression system; CcaS; CcaR; Escherichia coli
Sources: ORCID, Web Of Science
Added: July 6, 2021

2021 journal article

Continuous electrochemical monitoring of L-glutamine using redox-probe-modified L-glutamine-binding protein based on intermittent pulse amperometry

SENSORS AND ACTUATORS B-CHEMICAL, 346.

By: S. Takamatsu*, J. Lee*, R. Asano*, W. Tsugawa*, K. Ikebukuro* & K. Sode

author keywords: L-glutamine; Continuous monitoring; L-glutamine-binding protein; Intermittent pulse amperometry; Electrochemical; Conformation change
Sources: ORCID, Web Of Science
Added: August 5, 2021

2021 journal article

Continuous glucose monitoring systems-Current status and future perspectives of the flagship technologies in biosensor research

BIOSENSORS & BIOELECTRONICS, 181.

By: I. Lee n, D. Probst, D. Klonoff* & K. Sode

author keywords: Diabetes; Glucose sensor; Blood glucose monitoring; Continuous glucose monitoring; Artificial pancreas; Wearable biosensors; Green initiative
Sources: Web Of Science, ORCID
Added: May 24, 2021

2021 article

Data on G-quadruplex topology, and binding ability of G-quadruplex forming sequences found in the promoter region of biomarker proteins and those relations to the presence of nuclear localization signal in the proteins

Lee, J., Teramoto, K., Yokoyama, T., Ueno, K., Tsukakoshi, K., Sode, K., & Ikebukuro, K. (2021, June). DATA IN BRIEF, Vol. 36.

By: J. Lee*, K. Teramoto*, T. Yokoyama*, K. Ueno*, K. Tsukakoshi*, K. Sode, K. Ikebukuro*

author keywords: G-quadruplex; Aptamer; Nuclear localization signal; Promoter region; Biomarker protein
Sources: Web Of Science, ORCID
Added: July 19, 2021

2021 journal article

Detection of Chloride Using Microelectrodes in Closed Bipolar Electrode Scheme

ECS Meeting Abstracts.

By: D. Probst, I. Lee, J. Dick & K. Sode

Source: ORCID
Added: November 12, 2021

2021 journal article

Development of an Interdigitated Electrode-Based Disposable Enzyme Sensor Strip for Glycated Albumin Measurement

MOLECULES, 26(3).

By: M. Hatada n, N. Loew n, J. Okuda-Shimazaki n, M. Khanwalker, W. Tsugawa*, A. Mulchandani*, K. Sode

author keywords: interdigitated electrode; glycated albumin; fructosyl amino acid oxidase; point of care testing; disposable enzyme sensor; diabetes mellitus
Sources: Web Of Science, ORCID
Added: March 1, 2021

2021 journal article

Development of glycated peptide enzyme sensor based flow injection analysis system for haemoglobin A1c monitoring using quasi-direct electron transfer type engineered fructosyl peptide oxidase

BIOSENSORS & BIOELECTRONICS, 177.

By: M. Hatada*, S. Saito*, S. Yonehara*, W. Tsugawa*, R. Asano*, K. Ikebukuro*, K. Sode

author keywords: Haemoglobin A1c; Glycated protein; Fructosyl peptide oxidase; Flow injection analysis; Quasi-direct electron transfer; 2.5th generation principle
Sources: Web Of Science, ORCID
Added: March 15, 2021

2021 article

Editorial preface of the special issue on "the progress and perspectives of biosensing research in North America"

Li, C.-zhong, Liu, J., & Sode, K. (2021, December 15). BIOSENSORS & BIOELECTRONICS, Vol. 194.

By: C. Li*, J. Liu* & K. Sode

Sources: Web Of Science, ORCID
Added: October 4, 2021

2021 journal article

Electrochemical quantification of accelerated FADGDH rates in aqueous nanodroplets

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

By: K. Vannoy*, I. Lee*, K. Sode & J. Dick*

author keywords: nanoelectrochemistry; nanodroplet; enzymology; FADGDH; reaction acceleration
Sources: ORCID, Web Of Science
Added: June 16, 2021

2021 journal article

Electrochemical quantification of accelerated FADGDH rates in aqueous nanodroplets

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

By: K. Vannoy, I. Lee, K. Sode & J. Dick

author keywords: nanoelectrochemistry; nanodroplet; enzymology; FADGDH; reaction acceleration
Sources: Web Of Science, ORCID
Added: August 2, 2021

2021 journal article

G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol

NUCLEIC ACIDS RESEARCH, 49(11), 6069–6081.

By: K. Tsukakoshi*, Y. Yamagishi*, M. Kanazashi*, K. Nakama*, D. Oshikawa*, N. Savory*, A. Matsugami*, F. Hayashi* ...

Sources: Web Of Science, ORCID
Added: July 26, 2021

2021 journal article

Rapid, convenient, and highly sensitive detection of human hemoglobin in serum using a high-affinity bivalent antibody-enzyme complex

TALANTA, 234.

By: D. Miura*, H. Kimura*, W. Tsugawa*, K. Ikebukuro*, K. Sode & R. Asano*

author keywords: Bivalent antibody-enzyme complex; Catcher/tag system; Glucose dehydrogenase; Hemoglobin; Homogeneous electrochemical detection; Single-chain variable fragment
Sources: Web Of Science, ORCID
Added: September 7, 2021

2021 journal article

Rational design of direct electron transfer type L-lactate dehydrogenase for the development of multiplexed biosensor

BIOSENSORS & BIOELECTRONICS, 176.

By: K. Hiraka*, W. Tsugawa*, R. Asano*, M. Yokus, K. Ikebukuro*, M. Daniele, K. Sode

author keywords: L-lactate oxidase; Direct electron transfer; Fusion protein; Site-directed mutagenesis; Multiplexed biosensor; Biomedical engineering
Sources: Web Of Science, ORCID
Added: March 8, 2021

2021 journal article

Strategic design and improvement of the internal electron transfer of heme b domain-fused glucose dehydrogenase for use in direct electron transfer-type glucose sensors

BIOSENSORS & BIOELECTRONICS, 176.

By: K. Ito*, J. Okuda-Shimazaki n, K. Kojima*, K. Mori*, W. Tsugawa*, R. Asano*, K. Ikebukuro*, K. Sode

author keywords: Glucose dehydrogenase; Surface electrostatics; Direct electron transfer; Fusion protein; Docking simulation
Sources: Web Of Science, ORCID
Added: March 15, 2021

2020 journal article

(Keynote) Continuous Glucose Monitoring Systems - Current Status and Future Perspectives of the Flagship Technologies in Biosensor Research -

ECS Meeting Abstracts, MA2020-02(44), 2777–2777.

By: K. Sode

Source: ORCID
Added: December 23, 2020

2020 review

Alteration of Electron Acceptor Preferences in the Oxidative Half-Reaction of Flavin-Dependent Oxidases and Dehydrogenases

[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21(11).

By: K. Hiraka*, W. Tsugawa* & K. Sode

author keywords: oxidase; dehydrogenase; oxidative half-reaction; oxygen; electron acceptor; flavin adenine dinucleotide; flavin mononucleotide; oxygen accessible pathway; bioelectrochemistry; enzyme engineering
Sources: Web Of Science, ORCID
Added: July 20, 2020

2020 journal article

Application of a Glucose Dehydrogenase-Fused with Zinc Finger Protein to Label DNA Aptamers for the Electrochemical Detection of VEGF

SENSORS, 20(14).

By: J. Lee n, A. Tatsumi*, K. Tsukakoshi*, E. Wilson n, K. Abe*, K. Sode, K. Ikebukuro*

author keywords: aptamer; labeling; enzyme; zinc finger protein; glucose dehydrogenase; electrochemical sensor; vascular endothelial growth factor
Sources: Web Of Science, ORCID
Added: August 24, 2020

2020 journal article

Construction of Super-Stabilized Direct Electron Transfer Type Glucose Dehydrogenase for Long Term Continuous Glucose Sensing System

ECS Meeting Abstracts, MA2020-02(44), 2831–2831.

By: J. Shimazaki, H. Yoshida & K. Sode

Source: ORCID
Added: December 23, 2020

2020 journal article

Creation of a novel DET type FAD glucose dehydrogenase harboring Escherichia coli derived cytochrome b562 as an electron transfer domain

Biochemical and Biophysical Research Communications, 530(1), 82–86.

By: T. Yanase*, J. Okuda-Shimazaki n, K. Mori*, K. Kojima*, W. Tsugawa* & K. Sode

author keywords: Fusion enzymes; Direct electron transfer; Enzyme electrode; 3rd generation glucose sensor; Cytochrome b(562); FAD-Dependent glucose dehydrogenase
Source: ORCID
Added: October 9, 2020

2020 journal article

Development of Insulin Sensors Based on Faradaic and Non-Faradaic Electrochemical Impedance Spectroscopy Detection Principle Using Single Chain Antibody (scFv)

ECS Meeting Abstracts, MA2020-02(44), 2783–2783.

By: M. Khanwalker, J. Lee*, J. LaBelle*, C. Cook*, M. Caplan*, B. Morrow*, C. Beck*, R. Asano*, K. Ikebukuro*, K. Sode

Source: ORCID
Added: December 23, 2020

2020 journal article

Development of an Electrochemical Biosensor of Ubiquitin C-Terminal Hydrolase L1 (UCH-L1) for the Assessment of Traumatic Brain Injury (TBI)

ECS Meeting Abstracts, MA2020-02(44), 2784–2784.

By: J. Lee, H. Hirano, W. Tsugawa & K. Sode

Source: ORCID
Added: December 23, 2020

2020 journal article

Electrochemical Aptasensor Employing Enzyme-Aptamer One-to-One Complex Showing Quasi-Direct Electron Transfer Ability

ECS Meeting Abstracts, MA2020-02(44), 2834–2834.

By: Y. Hatano*, J. Lee*, S. Kim*, K. Ikebukuro*, R. Asano*, M. Gu*, K. Sode

Source: ORCID
Added: December 23, 2020

2020 journal article

Engineered Glucose Oxidase Capable of Quasi-Direct Electron Transfer after a Quick-and-Easy Modification with a Mediator

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21(3).

By: N. Suzuki*, J. Lee n, N. Loew n, Y. Takahashi-Inose*, J. Okuda-Shimazaki n, K. Kojima*, K. Mori*, W. Tsugawa*, K. Sode

author keywords: glucose oxidase; direct electron transfer; amine-reactive phenazine ethosulfate; glucose sensor; glycemic level monitoring
Sources: Web Of Science, ORCID
Added: May 8, 2020

2020 journal article

FAD dependent glucose dehydrogenases - Discovery and engineering of representative glucose sensing enzymes -

BIOELECTROCHEMISTRY, 132.

By: J. Okuda-Shimazaki n, H. Yoshida* & K. Sode

author keywords: Flavin adenine dinucleotide (FAD); Glucose dehydrogenase; Glucose sensor; Diabetes; Direct electron transfer (DET); Glucose oxidase
Sources: Web Of Science, ORCID
Added: March 30, 2020

2020 journal article

Rational engineering of Aerococcus viridans L-lactate oxidase for the mediator modification to achieve quasi-direct electron transfer type lactate sensor

BIOSENSORS & BIOELECTRONICS, 151.

By: K. Hiraka*, K. Kojima*, W. Tsugawa*, R. Asano*, K. Ikebukuro* & K. Sode

author keywords: L-lactate oxidase; Amine reactive phenazine ethosulfate; Site-directed mutagenesis; Amperometric L-lactate biosensor; Interference; Direct electron transfer
Sources: Web Of Science, ORCID
Added: June 29, 2020

2020 journal article

The Abtamer: A Novel Antibody-Aptamer Conjugate for Electrochemical Biosensing Applications

ECS Meeting Abstracts, MA2020-02(44), 2835–2835.

By: E. Wilson, J. Lee, S. Henley, R. Asano, K. Ikebukuro & K. Sode

Source: ORCID
Added: December 23, 2020

2020 journal article

The Continuous 3 Month Operation of Open Circuit Potential Based Glucose Sensor Employing Direct Electron Transfer Type Fad Dependent Glucose Dehydrogenase

ECS Meeting Abstracts, MA2020-02(44), 2779–2779.

By: I. Lee, J. Shimazaki, W. Tsugawa, K. Ikebukuro, J. Dick, M. Daniele, K. Sode

Source: ORCID
Added: December 23, 2020

2019 journal article

Affinity sensor for haemoglobin A1c based on single-walled carbon nanotube field-effect transistor and fructosyl amino acid binding protein

BIOSENSORS & BIOELECTRONICS, 129, 254–259.

By: M. Hatada*, T. Tran*, W. Tsugawa*, K. Sode & A. Mulchandani*

author keywords: Single-walled carbon nanotube; Field-effect transistor; Haemoglobin A1c; Fructosyl amino acid binding protein; SocA; Fructosyl valine
Sources: Web Of Science, ORCID
Added: April 20, 2020

2019 journal article

Application of an engineered chromatic acclimation sensor for red-light-regulated gene expression in cyanobacteria

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, 44.

By: S. Kobayashi*, M. Nakajima*, R. Asano*, E. Ferreira*, K. Abe*, P. Tamagnini*, S. Atsumi*, K. Sode

author keywords: Cyanobacteria; Marine cyanobacterium; Chromatic acclimation sensor; CcaS/CcaR two-component system; Miniaturized CcaS; Red-light-regulated gene expression
Sources: Web Of Science, ORCID
Added: December 16, 2019

2019 journal article

Designer fungus FAD glucose dehydrogenase capable of direct electron transfer

BIOSENSORS & BIOELECTRONICS, 123, 114–123.

By: K. Ito*, J. Okuda-Shimazaki*, K. Mori*, K. Kojima*, W. Tsugawa*, K. Ikebukuro*, C. Lin*, J. La Belle*, H. Yoshida*, K. Sode

author keywords: Glucose dehydrogenase; Cellobiose dehydrogenase; Direct electron transfer; Designer FADGDH; Fusion protein; Heme b-binding cytochrome domain
Sources: Web Of Science, ORCID
Added: April 20, 2020

2019 journal article

Development of a third-generation glucose sensor based on the open circuit potential for continuous glucose monitoring

BIOSENSORS & BIOELECTRONICS, 124, 216–223.

By: I. Lee*, N. Loew n, W. Tsugawa*, K. Ikebukuro* & K. Sode

author keywords: Open circuit potential; Third generation glucose sensor; Continuous glucose monitoring (CGM); Direct electron transfer; FAD dependent glucose dehydrogenase (FADGDH)
Sources: Web Of Science, ORCID
Added: December 31, 2018

2019 journal article

G-Quadruplex Structure Improves the Immunostimulatory Effects of CpG Oligonucleotides

NUCLEIC ACID THERAPEUTICS, 29(4), 224–229.

By: K. Hoshi*, T. Yamazaki*, Y. Sugiyama*, K. Tsukakoshi*, W. Tsugawa*, K. Sode, K. Ikebukuro*

author keywords: CpG ODN; toll-like receptor 9; G-quadruplex; IL-6; peripheral blood mononuclear cells
Sources: Web Of Science, ORCID
Added: August 19, 2019

2019 journal article

Third generation impedimetric sensor employing direct electron transfer type glucose dehydrogenase

BIOSENSORS & BIOELECTRONICS, 129, 189–197.

By: Y. Ito*, J. Okuda-Shimazaki*, W. Tsugawa*, N. Loew n, I. Shitanda*, C. Lin*, J. La Belle*, K. Sode

author keywords: Faradaic electrochemical impedance spectroscopy; Impedimetric biosensor; Direct electron transfer; FAD dependent glucose dehydrogenase complex; Charge transfer resistance; Imaginary impedance monitoring
Sources: Web Of Science, ORCID
Added: March 11, 2019

2019 journal article

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 75, 841–851.

By: H. Yoshida*, K. Kojima*, M. Shiota*, K. Yoshimatsu*, T. Yamazaki*, S. Ferri*, W. Tsugawa*, S. Kamitori*, K. Sode

author keywords: direct electron transfer; flavin adenine dinucleotide-dependent dehydrogenase complex; glucose dehydrogenase; iron-sulfur cluster; hitchhiker protein; glucose sensors; Burkholderia cepacia
Sources: Web Of Science, ORCID
Added: September 23, 2019

2018 journal article

A Disposable Tear Glucose Biosensor-Part 5: Improvements in Reagents and Tear Sampling Component.

Journal of Diabetes Science and Technology, 12(4), 842–846.

By: C. Lin*, Y. Ito*, A. Deng*, J. Johns*, D. Matloff*, C. Cook*, K. Sode, J. La Belle*

Source: ORCID
Added: October 9, 2020

2018 journal article

Biomolecular engineering of redox enzymes: Alteration of the electron acceptor preference; from oxygen to direct electron transfer

Abstracts of Papers of the American Chemical Society, 255. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000435537700584&KeyUID=WOS:000435537700584

By: K. Sode

Source: ORCID
Added: October 9, 2020

2018 journal article

Comprehensive study of domain rearrangements of single-chain bispecific antibodies to determine the best combination of configurations and microbial host cells

Mabs, 10(6), 854–863.

By: R. Asano*, Y. Kuroki*, S. Honma*, M. Akabane*, S. Watanabe*, S. Mayuzumi*, S. Hiyamuta*, I. Kumagai*, K. Sode

author keywords: Brevibacillus choshinensis; cancer immunotherapy; CD3; diabody; effective domain order; epidermal growth factor receptor; host cell; Pichia pastoris; small bispecific antibody; tandem scFv
Source: ORCID
Added: October 9, 2020

2018 journal article

Construction and characterization of flavin adenine dinucleotide glucose dehydrogenase complex harboring a truncated electron transfer subunit

ELECTROCHIMICA ACTA, 277, 276–286.

By: J. Okuda-Shimazaki*, N. Loew n, N. Hirose n, K. Kojima*, K. Mori*, W. Tsugawa*, K. Sode

author keywords: Direct electron transfer; Truncated electron transfer subunit; Heme c; Glucose dehydrogenase; Glucose sensing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Development of a glucose sensor employing quick and easy modification method with mediator for altering electron acceptor preference

BIOELECTROCHEMISTRY, 121, 185–190.

By: M. Hatada*, N. Loew*, Y. Inose-Takahashi*, J. Okuda-Shimazaki*, W. Tsugawa*, A. Mulchandani*, K. Sode

author keywords: 2.5th generation biosensor; Electrochemical enzyme sensor; Mediator modification of enzymes; Glucose dehydrogenase; Glucoside 3-dehydrogenase; Lactate oxidase
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Development of an electrochemical detection system for CpG methylation of human genome using methyl CpG binding domain and zinc finger protein

Abstracts of Papers of the American Chemical Society, 256. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000447600001002&KeyUID=WOS:000447600001002

By: J. Lee, W. Yoshida, D. Hiraoka, A. Tatsumi, K. Abe, K. Nakabayashi, H. Wakeda, K. Hata ...

Source: ORCID
Added: October 9, 2020

2018 journal article

Development toward a novel integrated tear lactate sensor using Schirmer test strip and engineered lactate oxidase

SENSORS AND ACTUATORS B-CHEMICAL, 270, 525–529.

By: C. Lin*, K. Hiraka*, D. Matloff*, J. Johns*, A. Deng*, K. Sode, J. La Belle*

author keywords: Tear lactate; Schirmer's test strip; Integrated sensor; Lactate oxidase; Oxygen interference
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Direct electron transfer (DET) mechanism of FAD dependent dehydrogenase complexes ∼from the elucidation of intra- and inter-molecular electron transfer pathway to the construction of engineered DET enzyme complexes∼

Current Opinion in Electrochemistry.

By: Y. Yamashita*, I. Lee*, N. Loew n & K. Sode

Source: ORCID
Added: October 9, 2020

2018 article

Elucidation of the intra- and inter-molecular electron transfer pathways of glucoside 3-dehydrogenase

Miyazaki, R., Yamazaki, T., Yoshimatsu, K., Kojima, K., Asano, R., Sode, K., & Tsugawa, W. (2018, August). BIOELECTROCHEMISTRY, Vol. 122, pp. 115–122.

author keywords: Glucoside 3 dehydrogenase; Electron transfer pathway; FAD; Fe-S cluster; Heme c
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Engineered fungus derived FAD-dependent glucose dehydrogenase with acquired ability to utilize hexaammineruthenium(III) as an electron acceptor

Bioelectrochemistry, 123, 62–69.

By: M. Okurita*, N. Suzuki*, N. Loew n, H. Yoshida*, W. Tsugawa*, K. Mori*, K. Kojima*, D. Klonoff*, K. Sode

author keywords: Glucose dehydrogenase; Glucose oxidase; Flavin adenine dinucleotide; Aspergillus flavus; Hexaammineruthenium chloride; Enzyme sensor strip
Source: ORCID
Added: October 9, 2020

2018 journal article

Esterification of PQQ Enhances Blood-Brain Barrier Permeability and Inhibitory Activity against Amyloidogenic Protein Fibril Formation.

ACS Chemical Neuroscience.

By: K. Tsukakoshi*, W. Yoshida*, M. Kobayashi*, N. Kobayashi*, J. Kim*, T. Kaku*, T. Iguchi*, K. Nagasawa* ...

author keywords: Pyrroloquinoline quinone trimethylester; alpha-synuclein; amyloid beta; blood-brain barrier permeability
Source: ORCID
Added: October 9, 2020

2018 journal article

Glycogen Production in Marine Cyanobacterial Strain Synechococcus sp NKBG 15041c

Marine Biotechnology, 20(2), 109–117.

By: A. Badary*, S. Takamatsu*, M. Nakajima*, S. Ferri*, P. Lindblad* & K. Sode

author keywords: Marine cyanobacteria; Synechococcus; Glycogen; Bioprocess; Carbohydrate production
Source: ORCID
Added: October 9, 2020

2018 journal article

Improving the induction fold of riboregulators for cyanobacteria

Rna Biology, 15(3), 353–358.

By: I. Sakamoto*, K. Abe*, S. Kawai*, K. Tsukakoshi*, Y. Sakai*, K. Sode, K. Ikebukuro*

author keywords: Cyanobacteria; post-transcriptional gene; regulation; riboregulator; RNA engineering; synthetic biology
Source: ORCID
Added: October 9, 2020

2018 journal article

Minimizing the effects of oxygen interference on L-lactate sensors by a single amino acid mutation in Aerococcus viridans L-lactate oxidase

Biosensors & Bioelectronics, 103, 163–170.

By: K. Hiraka*, K. Kojima*, C. Lin*, W. Tsugawa*, R. Asano*, J. La Belle*, K. Sode

author keywords: L-lactate oxidase; L-lactate; Oxygen; Screen-printed carbon electrode; Site-directed mutagenesis; Biomedical engineering
Source: ORCID
Added: October 9, 2020

2018 journal article

Mutagenesis Study of the Cytochrome c Subunit Responsible for the Direct Electron Transfer-Type Catalytic Activity of FAD-Dependent Glucose Dehydrogenase

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 19(4).

By: Y. Yamashita*, N. Suzuki*, N. Hirose*, K. Kojima*, W. Tsugawa* & K. Sode

author keywords: glucose dehydrogenase; direct electron transfer; cytochrome c; glucose sensor; biomedical engineering
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Quasi-direct electron transfer-type glucose sensor based on engineered glucose oxidase

Abstracts of Papers of the American Chemical Society, 256. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000447600001209&KeyUID=WOS:000447600001209

By: N. Loew, N. Suzuki, W. Tsugawa, Y. Inose-Takahashi, M. Hatada, K. Mori, K. Sode

Source: ORCID
Added: October 9, 2020

2018 journal article

Self-powered, wireless continuous glucose sensing system based direct electron transfer

Abstracts of Papers of the American Chemical Society, 256. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000447600000887&KeyUID=WOS:000447600000887

By: I. Lee, N. Loew, W. Tsugawa, K. Ikebukuro & K. Sode

Source: ORCID
Added: October 9, 2020

2018 journal article

Smart aptamers forming G-quadruplex: Structural and functional change of aptamers forming G-quadruplex in response to surrounding conditions and its regulation with the ligands

Abstracts of Papers of the American Chemical Society, 256. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000447600001223&KeyUID=WOS:000447600001223

By: K. Tsukakoshi, M. Nishio, I. Sasaki, Y. Ma, K. Nagasawa, Y. Kato, C. Nakamura, K. Sode, K. Ikebukuro

Source: ORCID
Added: October 9, 2020

2018 journal article

Synthesis of a hemin-containing copolymer as a novel immunostimulator that induces IFN-gamma production

International Journal of Nanomedicine, 13, 4461–4472.

author keywords: hemin copolymer; immunostimulator; adjuvant; radical polymerization; NIPAM; toll-like receptor 9; T-helper 1; inflammasome
Source: ORCID
Added: October 9, 2020

2018 journal article

The electrochemical behavior of a FAD dependent glucose dehydrogenase with direct electron transfer subunit by immobilization on self-assembled monolayers

Bioelectrochemistry, 121, 1–6.

By: I. Lee*, N. Loew*, W. Tsugawa*, C. Lin*, D. Probst*, J. Belle*, K. Sode

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Wearable and implantable biosensing technologies based on the direct electron transfer principle

Abstracts of Papers of the American Chemical Society, 256. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000447600001124&KeyUID=WOS:000447600001124

By: K. Sode, N. Loew, I. Lee, Y. Ito & W. Tsugawa

Source: ORCID
Added: October 9, 2020

2017 journal article

Applying a riboregulator as a new chromosomal gene regulation tool for higher glycogen production in Synechocystis sp PCC 6803

Applied Microbiology and Biotechnology, 101(23-24), 8465–8474.

By: K. Ueno*, Y. Sakai*, C. Shono*, I. Sakamoto*, K. Tsukakoshi*, Y. Hihara*, K. Sode, K. Ikebukuro*

author keywords: Riboregulator; Synechocystis sp PCC 6803; Cyanobacteria; cyabrB2; Gene regulation; Glycogen production
Source: ORCID
Added: October 9, 2020

2017 journal article

Characterization of Electron Mediator Preference of Aerococcus viridans-Derived Lactate Oxidase for Use in Disposable Enzyme Sensor Strips

Sensors and Materials, 29(12), 1703–1711.

By: N. Loew, M. Fitriana, K. Hiraka, K. Sode & W. Tsugawa

author keywords: lactate oxidase; screen-printed carbon electrode; electron mediator; 1-methoxy-5-methyl phenazinium methyl sulfate; potassium ferricyanide; hexaammineruthenium(III) chloride; biomedical engineering
Source: ORCID
Added: October 9, 2020

2017 journal article

Continuous operation of an ultra-low-power microcontroller using glucose as the sole energy source

Biosensors & Bioelectronics, 93, 335–339.

By: I. Lee*, T. Sode*, N. Loew*, W. Tsugawa*, C. Lowe* & K. Sode

author keywords: Microcontroller; BioCapacitor; Enzyme fuel cell; Direct electron transfer; Implantable artificial organs; Self-powered; Glucose sensor
Source: ORCID
Added: October 9, 2020

2017 journal article

Development of a screen-printed carbon electrode based disposable enzyme sensor strip for the measurement of glycated albumin

Biosensors & Bioelectronics, 88, 167–173.

By: M. Hatada*, W. Tsugawa*, E. Kamio*, N. Loew*, D. Klonoff* & K. Sode

author keywords: Diabetes mellitus; Glycated albumin; Fructosyl amino acid oxidase; Hemoglobin A1c; Point-of-care testing; Screen-printed carbon electrode
Source: ORCID
Added: October 9, 2020

2017 journal article

Development of an electrochemical detection system for measuring DNA methylation levels using methyl CpG-binding protein and glucose dehydrogenase-fused zinc finger protein

Biosensors & Bioelectronics, 93, 118–123.

By: J. Lee*, W. Yoshida*, K. Abe*, K. Nakabayashi*, H. Wakeda*, K. Hata*, C. Marquette*, L. Blum*, K. Sode, K. Ikebukuro*

author keywords: DNA methylation; Electrochemical detection; Diagnosis; Zinc finger protein; Glucose dehydrogenase; Methyl-CpG binding domain
Source: ORCID
Added: October 9, 2020

2017 journal article

Mediator Preference of Two Different FAD-Dependent Glucose Dehydrogenases Employed in Disposable Enzyme Glucose Sensors

Sensors, 17(11).

By: N. Loew*, W. Tsugawa*, D. Nagae*, K. Kojima* & K. Sode

author keywords: glucose dehydrogenase; flavin adenine dinucleotide; Aspergillus flavus; Burkholderia cepacia; enzyme sensor strip; mediated electron transfer; potassium ferricyanide; methoxy phenazine methosulfate; hexaammineruthenium chloride
Source: ORCID
Added: October 9, 2020

2017 chapter

Minimally invasive microneedle array electrodes employing direct electron transfer type glucose dehydrogenase for the development of continuous glucose monitoring sensors

In Biosensors 2016 (Vol. 27, pp. 208–209).

By: S. Sharma*, E. Takagi*, T. Cass*, W. Tsugawa* & K. Sode

author keywords: continuous glucose monitoring; minimally invasive sensors; direct electron transfer; microneedles
Source: ORCID
Added: October 9, 2020

2017 journal article

Novel fungal FAD glucose dehydrogenase derived from Aspergillus niger for glucose enzyme sensor strips

Biosensors & Bioelectronics, 87, 305–311.

By: K. Sode, N. Loew*, Y. Ohnishi*, H. Tsuruta*, K. Mori*, K. Kojima*, W. Tsugawa*, J. LaBelle*, D. Klonoff*

author keywords: FAD-dependent glucose dehydrogenase; Aspergillus niger; Aspergillus flavus; Glucose specificity; Xylose; BG Monitor
Source: ORCID
Added: October 9, 2020

2017 journal article

X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction

Scientific Reports, 7(1).

By: T. Shimasaki*, H. Yoshida*, S. Kamitori* & K. Sode

Source: ORCID
Added: October 9, 2020

2016 journal article

An Fe-S cluster in the conserved Cys-rich region in the catalytic subunit of FAD-dependent dehydrogenase complexes

Bioelectrochemistry, 112, 178–183.

By: M. Shiota*, T. Yamazaki*, K. Yoshimatsu*, K. Kojima*, W. Tsugawa*, S. Ferri*, K. Sode

author keywords: Fe-S cluster; Glucose dehydrogenase; FAD; Direct electron transfer; FAD-dependent dehydrogenase
Source: ORCID
Added: October 9, 2020

2016 journal article

BioCapacitor: A novel principle for biosensors

Biosensors & Bioelectronics, 76, 20–28.

By: K. Sode, T. Yamazaki*, I. Lee*, T. Hanashi* & W. Tsugawa*

author keywords: BioCapacitor; Enzyme fuel cell; Charge pump; Implantable devices; Continuous glucose monitoring
Source: ORCID
Added: October 9, 2020

2016 journal article

Construction of a Miniaturized Chromatic Acclimation Sensor from Cyanobacteria with Reversed Response to a Light Signal

Scientific Reports, 6.

By: M. Nakajima*, S. Ferri*, M. Rogner* & K. Sode

Source: ORCID
Added: October 9, 2020

2016 journal article

Development of a light-regulated cell-recovery system for non-photosynthetic bacteria

Microbial Cell Factories, 15(1).

By: M. Nakajima*, K. Abe*, S. Ferri* & K. Sode

author keywords: Antigen 43; Green light induction; Cell recovery; Green light sensor; Optogenetics; Escherichia coli
Source: ORCID
Added: October 9, 2020

2016 journal article

Electrochemical sensing system employing fructosamine 6-kinase enables glycated albumin measurement requiring no proteolytic digestion

Biotechnology Journal, 11(6), 797–804.

By: M. Kameya*, W. Tsugawa*, M. Yamada-Tajima*, M. Hatada*, K. Suzuki*, A. Sakaguchi-Mikami*, S. Ferri*, D. Klonoff*, K. Sode

author keywords: Diabetes; Fructosamine 6-kinase; Glycated albumin; Glycated protein; Proteolytic digestion
Source: ORCID
Added: October 9, 2020

2016 journal article

Structural regulation by a G-quadruplex ligand increases binding abilities of G-quadruplex-forming aptamers

Chemical Communications, 52(85), 12646–12649.

By: K. Tsukakoshi*, Y. Ikuta*, K. Abe*, W. Yoshida*, K. Iida*, Y. Ma*, K. Nagasawa*, K. Sode, K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2015 journal article

3RD GENERATION CGM SENSOR EMPLOYING DIRECT ELECTRON TRANSFER PRINCIPLE WITH IMPROVED OPERATIONAL CONDITIONS

Diabetes Technology & Therapeutics, 17, A90. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000349317500203&KeyUID=WOS:000349317500203

By: S. Sekimoto, K. Shinozaki, Y. Murase, Y. Kusaka, W. Tsugawa & K. Sode

Source: ORCID
Added: October 9, 2020

2015 journal article

Advancing the development of glycated protein biosensing technology: next-generation sensing molecules.

Journal of Diabetes Science and Technology, 9(2), 183–191.

By: M. Kameya*, A. Sakaguchi-Mikami*, S. Ferri*, W. Tsugawa* & K. Sode

Source: ORCID
Added: October 9, 2020

2015 article

Crystal structure of Aspergillus flavus FAD glucose dehydrogenase

Worldwide Protein Data Bank.

By: H. Yoshida, G. Sakai, K. Mori, K. Kojima, S. Kamitori & K. Sode

Source: ORCID
Added: October 9, 2020

2015 article

Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone

Worldwide Protein Data Bank.

By: H. Yoshida, G. Sakai, K. Mori, K. Kojima, S. Kamitori & K. Sode

Source: ORCID
Added: October 9, 2020

2015 journal article

Development of an electrochemical adenosine diphosphate (ADP) sensing principle employing ADP-dependent kinase

Sensors and Materials, 27(9), 839–845.

By: W. Tsugawa, H. Futagami & K. Sode

Source: ORCID
Added: October 9, 2020

2015 journal article

Effects of Eliminating Pyruvate Node Pathways and of Coexpression of Heterogeneous Carboxylation Enzymes on Succinate Production by Enterobacter aerogenes

Applied and Environmental Microbiology, 81(3), 929–937.

By: Y. Tajima*, Y. Yamamoto*, K. Fukui*, Y. Nishio*, K. Hashiguchi*, Y. Usuda*, K. Sode

Source: ORCID
Added: October 9, 2020

2015 journal article

Efficient surface-display of autotransporter proteins in cyanobacteria

Algal Research-Biomass Biofuels and Bioproducts, 12, 337–340.

By: S. Ferri*, M. Nakamura*, A. Ito*, M. Nakajima*, K. Abe*, K. Kojima*, K. Sode

author keywords: Cyanobacteria; Synechocystis; Autotransporter; Cell-surface display; Recombinant expression
Source: ORCID
Added: October 9, 2020

2015 journal article

Enzyme linking to DNA aptamers via a zinc finger as a bridge

Chemical Communications, 51(57), 11467–11469.

By: K. Abe*, Y. Murakami*, A. Tatsumi*, K. Sumida*, A. Kezuka*, T. Fukaya*, T. Kumagai*, Y. Osawa*, K. Sode, K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2015 journal article

Impact of an energy-conserving strategy on succinate production under weak acidic and anaerobic conditions in Enterobacter aerogenes

Microbial Cell Factories, 14(1), (11 June 2015).

By: Y. Tajima*, Y. Yamamoto*, K. Fukui*, Y. Nishio*, K. Hashiguchi*, Y. Usuda*, K. Sode

author keywords: Enterobacter aerogenes; Succinate fermentation; Phosphoenolpyruvate carboxykinase; Glucose-PTS; Weak acidity; Anaerobic metabolism
Source: ORCID
Added: October 9, 2020

2015 journal article

Improvement of the VEGF binding ability of DNA aptamers through in silico maturation and multimerization strategy

Journal of Biotechnology, 212, 99–105.

By: T. Fukaya*, K. Abe*, N. Savory*, K. Tsukakoshi*, W. Yoshida*, S. Ferri*, K. Sode, K. Ikebukuro*

author keywords: Aptamer; in silico maturation; Multimerization; Vascular endothelial growth factor
Source: ORCID
Added: October 9, 2020

2015 journal article

Klaus Mosbach Tribute

Biotechnology and Bioengineering, 112(4), 645–647.

By: D. Clark*, I. Karube*, K. Sode, L. Bulow*, O. Brueggemann, C. Lowe*, P. Poulsen*, R. Langer*

Source: ORCID
Added: October 9, 2020

2015 journal article

Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp PCC 6803

Microbiologyopen, 4(4), 533–540.

By: Y. Sakai*, K. Abe*, S. Nakashima*, J. Ellinger*, S. Ferri*, K. Sode, K. Ikebukuro*

author keywords: Hfq; posttranscriptional gene regulation; riboregulator; Synechocystis sp PCC 6803; synthetic biology
Source: ORCID
Added: October 9, 2020

2015 journal article

Stabilization of fungi-derived recombinant FAD-dependent glucose dehydrogenase by introducing a disulfide bond

Biotechnology Letters, 37(5), 1091–1099.

By: G. Sakai*, K. Kojima*, K. Mori*, Y. Oonishi* & K. Sode

author keywords: Aspergillus flavus; Disulfide bond; FAD; Glucose dehydrogenase; Site directed mutagenesis; Thermal stability
Source: ORCID
Added: October 9, 2020

2015 journal article

Structural analysis of fungus-derived FAD glucose dehydrogenase

Scientific Reports, 5.

By: H. Yoshida*, G. Sakai*, K. Mori*, K. Kojima*, S. Kamitori* & K. Sode

Source: ORCID
Added: October 9, 2020

2015 journal article

The Development and Characterization of an Exogenous Green-Light-Regulated Gene Expression System in Marine Cyanobacteria

Marine Biotechnology, 17(3), 245–251.

By: A. Badary*, K. Abe*, S. Ferri*, K. Kojima* & K. Sode

author keywords: Marine cyanobacteria; Synechococcus; Optogenetics; Green-light-sensing proteins; Synthetic biology
Source: ORCID
Added: October 9, 2020

2015 journal article

X-ray structure of recombinant nonglycosylated FAD glucose dehydrogenase derived from Aspergillus flavus

Febs Journal, 282, 279. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362570605056&KeyUID=WOS:000362570605056

By: H. Yoshida, G. Sakai, K. Kojima, S. Kamitori & K. Sode

Source: ORCID
Added: October 9, 2020

2014 journal article

A green-light inducible lytic system for cyanobacterial cells

Biotechnology For Biofuels, 7(1), (9 April 2014).

By: K. Miyake*, K. Abe*, S. Ferri*, M. Nakajima*, M. Nakamura*, W. Yoshida*, K. Kojima*, K. Ikebukuro*, K. Sode

author keywords: Cyanobacteria; Self-lysis; Two-component system; T4 bacteriophage; Synthetic biology
Source: ORCID
Added: October 9, 2020

2014 journal article

Design of riboregulators for control of cyanobacterial (Synechocystis) protein expression

Biotechnology Letters, 36(2), 287–294.

By: K. Abe*, Y. Sakai*, S. Nakashima*, M. Araki*, W. Yoshida*, K. Sode, K. Ikebukuro*

author keywords: Biofuels; Cyanobacteria; Post-transcriptional gene regulation; Riboregulator; Synechocystis; Synthetic biology
Source: ORCID
Added: October 9, 2020

2014 journal article

Electrochemical detection of pathogenic bacteria by using a glucose dehydrogenase fused zinc finger protein

Analytical Methods, 6(14), 4991–4994.

By: J. Lee*, A. Tatsumi*, K. Abe*, W. Yoshida*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2014 journal article

Engineering glucose oxidase to minimize the influence of oxygen on sensor response

Electrochimica Acta, 126, 158–161.

By: Y. Horaguchi*, S. Saito*, K. Kojima*, W. Tsugawa*, S. Ferri* & K. Sode

author keywords: Biosensor; Glucose oxidase; Glucose dehydrogenase; Flavin adenine dinucleotide; Oxygen
Source: ORCID
Added: October 9, 2020

2014 journal article

Engineering of a green-light inducible gene expression system in Synechocystis sp PCC6803

Microbial Biotechnology, 7(2), 177–183.

By: K. Abe*, K. Miyake*, M. Nakamura*, K. Kojima*, S. Ferri*, K. Ikebukuro*, K. Sode

Source: ORCID
Added: October 9, 2020

2014 journal article

Improving the Gene-Regulation Ability of Small RNAs by Scaffold Engineering in Escherichia coli

Acs Synthetic Biology, 3(3), 152–162.

By: Y. Sakai*, K. Abe*, S. Nakashima*, W. Yoshida*, S. Ferri*, K. Sode, K. Ikebukuro*

author keywords: attenuator; Hfq; post-transcriptional gene regulation; riboregulator; small RNA; transcriptional gene regulation
Source: ORCID
Added: October 9, 2020

2014 journal article

Simultaneous Improvement of Specificity and Affinity of Aptamers Against Streptococcus mutans by In Silico Maturation for Biosensor Development

Biotechnology and Bioengineering, 111(3), 454–461.

By: N. Savory*, Y. Takahashi*, K. Tsukakoshi*, H. Hasegawa*, M. Takase*, K. Abe*, W. Yoshida*, S. Ferri* ...

author keywords: aptamers; Streptococcus mutans; Cell-SELEX; in silico maturation; flow-through test
Source: ORCID
Added: October 9, 2020

2014 journal article

Study of the role of anaerobic metabolism in succinate production by Enterobacter aerogenes

Applied Microbiology and Biotechnology, 98(18), 7803–7813.

By: Y. Tajima*, K. Kaida*, A. Hayakawa*, K. Fukui*, Y. Nishio*, K. Hashiguchi*, R. Fudou*, K. Matsui*, Y. Usuda*, K. Sode

author keywords: Enterobacter aerogenes; Succinate fermentation; Redox balance; Phosphoenolpyruvate carboxykinase; Ethanol dehydrogenase
Source: ORCID
Added: October 9, 2020

2014 journal article

THE 3RD GENERATION CGM SENSOR UTILIZING DIRECT ELECTRON TRANSFER PRINCIPLE

Diabetes Technology & Therapeutics, 16, A78–A79. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000331218000205&KeyUID=WOS:000331218000205

By: S. Sekimoto, K. Shinozaki, Y. Murase, Y. Kusaka, K. Kojima, W. Tsugawa, K. Sode

Source: ORCID
Added: October 9, 2020

2014 journal article

The development of an autonomous self-powered bio-sensing actuator

Sensors and Actuators B-Chemical, 196, 429–433.

By: T. Hanashi*, T. Yamazaki*, H. Tanaka*, K. Ikebukuro*, W. Tsugawa* & K. Sode

author keywords: Enzyme fuel cell; Autonomous; Sensing actuator; Flavin adenine dinucleotide-dependent glucose dehydrogenase; Self-powered; Drug delivery systems
Source: ORCID
Added: October 9, 2020

2013 journal article

Blood Glucose Dependence on Emotional Behaviors and Body Surface Temperatures in Common Marmoset's Socio-Psychological Learning with Peers - for 'Development of Human-Environment Interface by Sensing and Multivariate Analysis of Bio-Ecosystem'

Bioengineering Based on Electrochemistry, 50(28), 9–14.

By: M. Koshiba, A. Senoo, G. Karino, Y. Shirakawa, K. Mimura, T. Sagawa, W. Tsugawa, K. Sode, S. Nakamura

Source: ORCID
Added: October 9, 2020

2013 journal article

Cloning and Characterization of Fructosamine-6-Kinase from Arthrobacter aurescens

Applied Biochemistry and Biotechnology, 170(3), 710–717.

By: A. Sakaguchi-Mikami*, M. Kameya*, S. Ferri*, W. Tsugawa* & K. Sode

author keywords: Glycation; Amadori products; Arthrobacter; epsilon-Fructosyl lysine (epsilon-FK); Fructosamine-6-kinase (FN6K)
Source: ORCID
Added: October 9, 2020

2013 journal article

Direct electron transfer type disposable sensor strip for glucose sensing employing an engineered FAD glucose dehydrogenase

Enzyme and Microbial Technology, 52(2), 123–128.

By: Y. Yamashita*, S. Ferri*, M. Huynh*, H. Shimizu*, H. Yamaoka* & K. Sode

author keywords: Diabetes; Glucose dehydrogenase; Glucose sensor; SMBG; Substrate specificity; Direct electron transfer
Source: ORCID
Added: October 9, 2020

2013 journal article

Engineering Fructosyl Peptide Oxidase to Improve Activity Toward the Fructosyl Hexapeptide Standard for HbA1c Measurement

Molecular Biotechnology, 54(3), 939–943.

By: S. Ferri*, Y. Miyamoto*, A. Sakaguchi-Mikami*, W. Tsugawa* & K. Sode

author keywords: Fructosyl peptide oxidase; Hemoglobin A1c; Glycated hemoglobin; Substrate specificity; Protein engineering; Dehydrogenase; Oxidase; Diabetes monitoring
Source: ORCID
Added: October 9, 2020

2013 journal article

Identification and functional analysis of fructosyl amino acid-binding protein from Gram-positive bacterium Arthrobacter sp.

Journal of Applied Microbiology, 114(5), 1449–1456.

By: A. Sakaguchi-Mikami*, S. Ferri*, S. Katayama*, W. Tsugawa* & K. Sode

author keywords: Arthrobacter; fructosyl amino acid-binding protein; fructosyl amino acid; glycation; Gram-positive bacteria; Substrate-binding proteins
Source: ORCID
Added: October 9, 2020

2013 journal article

Mutational analysis of the oxygen-binding site of cholesterol oxidase and its impact on dye-mediated dehydrogenase activity

Journal of Molecular Catalysis B-Enzymatic, 88, 41–46.

By: K. Kojima*, T. Kobayashi*, W. Tsugawa*, S. Ferri* & K. Sode

author keywords: Cholesterol dehydrogenase; Cholesterol oxidase; FAD; Site-directed mutagenesis
Source: ORCID
Added: October 9, 2020

2013 journal article

Partial Peptide of alpha-Synuclein Modified with Small-Molecule Inhibitors Specifically Inhibits Amyloid Fibrillation of alpha-Synuclein

International Journal of Molecular Sciences, 14(2), 2590–2600.

By: W. Yoshida*, N. Kobayashi, Y. Sasaki, K. Ikebukuro & K. Sode

author keywords: alpha-synuclein; amyloid beta; pyrroloquinoline quinone; Baicalein; EGCG
Source: ORCID
Added: October 9, 2020

2013 journal article

Rapid Cytotoxicity Screening Platform for Amyloid Inhibitors Using a Membrane-Potential Sensitive Fluorescent Probe

Analytical Chemistry, 85(1), 185–192.

By: J. Kim*, Y. Sasaki*, W. Yoshida*, N. Kobayashi*, A. Veloso*, K. Kerman*, K. Ikebukuro*, K. Sode

Source: ORCID
Added: October 9, 2020

2013 journal article

Screening of Peptide Ligands for Pyrroloquinoline Quinone Glucose Dehydrogenase Using Antagonistic Template-Based Biopanning

International Journal of Molecular Sciences, 14(12), 23244–23256.

By: K. Abe, W. Yoshida, K. Terada, Y. Yagi-Ishii, S. Ferri, K. Ikebukuro, K. Sode

author keywords: peptide ligand; phage display; site-directed; inhibitor
Source: ORCID
Added: October 9, 2020

2013 journal article

Substrate specificity engineering of Escherichia coli derived fructosamine 6-kinase

Biotechnology Letters, 35(2), 253–258.

By: K. Kojima*, A. Mikami-Sakaguchi*, M. Kameya*, Y. Miyamoto*, S. Ferri*, W. Tsugawa*, K. Sode

author keywords: Fructosamine 6-kinase; Fructosyl-valine; Site-directed mutagenesis; Substrate specificity
Source: ORCID
Added: October 9, 2020

2012 journal article

BioLC-Oscillator: A Self-Powered Wireless Glucose-Sensing System with the Glucose Dependent Resonance Frequency

Electrochemistry, 80(5), 367–370.

By: T. Hanashi*, T. Yamazaki*, W. Tsugawa*, K. Ikebukuro* & K. Sode

author keywords: BioCapacitor; Continuous Glucose Monitoring; Glucose Dehydrogenase; Wireless Sensing System
Source: ORCID
Added: October 9, 2020

2012 journal article

Biomolecular Engineering of Biosensing Molecules - The Challenges in Creating Sensing Molecules for Glycated Protein Biosensing

Electrochemistry, 80(5), 293–298.

By: S. Ferri* & K. Sode

author keywords: Biomolecular Engineering; Biosensing; Glycated Proteins; Fructosyl Peptide Oxidase
Source: ORCID
Added: October 9, 2020

2012 journal article

Construction of Mutant Glucose Oxidases with Increased Dye-Mediated Dehydrogenase Activity

International Journal of Molecular Sciences, 13(11), 14149–14157.

By: Y. Horaguchi*, S. Saito*, K. Kojima*, W. Tsugawa*, S. Ferri* & K. Sode

author keywords: glucose oxidase; glucose dehydrogenase; FAD; oxygen; site directed mutagenesis
Source: ORCID
Added: October 9, 2020

2012 journal article

Construction of engineered fructosyl peptidyl oxidase for enzyme sensor applications under normal atmospheric conditions

Biotechnology Letters, 34(3), 491–497.

By: S. Kim*, E. Nibe*, W. Tsugawa*, K. Kojima*, S. Ferri* & K. Sode

author keywords: Biosensor; Dehydrogenase; Diabetes; Fructosyl peptidyl oxidase (FPOX); Glycated protein; HbA1c
Source: ORCID
Added: October 9, 2020

2012 journal article

Detection of Pathogenic Bacteria by Using Zinc Finger Protein Fused with Firefly Luciferase

Analytical Chemistry, 84(18), 8028–8032.

By: K. Abe*, T. Kumagai*, C. Takahashi*, A. Kezuka*, Y. Murakami*, Y. Osawa*, H. Motoki*, T. Matsuo* ...

Source: ORCID
Added: October 9, 2020

2012 journal article

Electrochemical SNP Detection Using Glucose Dehydrogenase

Electrochemistry, 80(5), 345–347.

By: K. Abe*, C. Kiyohara*, Y. Saito*, K. Sode & K. Ikebukuro*

author keywords: Single Nucleotide Polymorphism; Glucose Dehydrogenase; Single Base Extension
Source: ORCID
Added: October 9, 2020

2012 journal article

Nitrous Oxide Sensing using Oxygen-Insensitive Direct-Electron-Transfer-Type Nitrous Oxide Reductase

Electrochemistry, 80(5), 371–374.

By: W. Tsugawa*, H. Shimizu*, M. Tatara*, Y. Ueno*, K. Kojima* & K. Sode

author keywords: Nitrous Oxide; Nitrous Oxide Reductase; Direct Electron Transfer; Cytochrome c
Source: ORCID
Added: October 9, 2020

2012 journal article

Selection of DNA Aptamers That Recognize alpha-Synuclein Oligomers Using a Competitive Screening Method

Analytical Chemistry, 84(13), 5542–5547.

By: K. Tsukakoshi*, K. Abe*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2012 journal article

Structural Basis of Efficient Electron Transport between Photosynthetic Membrane Proteins and Plastocyanin in Spinach Revealed Using Nuclear Magnetic Resonance

Plant Cell, 24(10), 4173–4186.

By: T. Ueda*, N. Nomoto*, M. Koga*, H. Ogasa*, Y. Ogawa*, M. Matsumoto*, P. Stampoulis*, K. Sode, H. Terasawa*, I. Shimada*

Source: ORCID
Added: October 9, 2020

2011 journal article

Aptameric sensors based on structural change for diagnosis

Faraday Discussions, 149, 93–105.

By: K. Abe*, D. Ogasawara*, W. Yoshida*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2011 journal article

Aptameric sensors based on structural change for diagnosis (vol 149, pg 93, 2011)

Faraday Discussions, 149, 106. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000285924900009&KeyUID=WOS:000285924900009

By: K. Abe, D. Ogasawara, W. Yoshida, K. Sode & K. Ikebukuro

Source: ORCID
Added: October 9, 2020

2011 journal article

BioRadioTransmitter: A self-powered wireless glucose-sensing system

Journal of Diabetes Science and Technology, 5(5), 1030–1035.

By: T. Hanashi*, T. Yamazaki*, W. Tsugawa*, K. Ikebukuro* & K. Sode

Source: ORCID
Added: October 9, 2020

2011 journal article

Construction of a Novel Glucose-Sensing Molecule Based on a Substrate-Binding Protein for Intracellular Sensing

Biotechnology and Bioengineering, 108(4), 725–733.

By: A. Sakaguchi-Mikami*, A. Taniguchi*, K. Sode & T. Yamazaki*

author keywords: intracellular sensing; gene regulation; transcriptional regulator; lactose repressor (LacI); substrate-binding proteins (SBPs); glucose-/galactose-binding protein (GBP)
Source: ORCID
Added: October 9, 2020

2011 journal article

Development of a novel biosensing system based on the structural change of a polymerized guanine-quadruplex DNA nanostructure

Biosensors & Bioelectronics, 26(12), 4837–4841.

By: Y. Morita*, W. Yoshida*, N. Savory*, S. Han*, M. Tera*, K. Nagasawa*, C. Nakamura*, K. Sode, K. Ikebukuro*

author keywords: Aptamers; FADGDH; G-quadruplexes; Nanostructures; Biosensors; Enzymes
Source: ORCID
Added: October 9, 2020

2011 conference paper

ECS Transactions: Preface

ECS Transactions, 35(7). http://www.scopus.com/inward/record.url?eid=2-s2.0-79960806989&partnerID=MN8TOARS

By: M. Madou, A. Hoff, D. Landheer, L. Nagahara, K. Sode, T. Thundat, C. Wang

Source: ORCID
Added: October 9, 2020

2011 journal article

Effect of time of cutting and maceration on forage composition, nutrient flow, microbial protein synthesis, and digestibility in dual-flow continuous culture

Canadian Journal of Animal Science, 91(3), 486–487. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000294744800042&KeyUID=WOS:000294744800042

By: C. Kokko, K. Sode, A. Brito, R. Hovey & R. Berthiaume

Source: ORCID
Added: October 9, 2020

2011 journal article

Glucose Specific GDH-PQQ based Sensor Strip: Application of Engineered GDH-PQQ Harboring a de novo Designed Loop Region

Bioelectronics, Biointerfaces, and Biomedical Applications 4, 35(7), 117–119.

By: D. Nagae, M. Nakajima, S. Ferri & K. Sode

Source: ORCID
Added: October 9, 2020

2011 journal article

Hemoglobin A1c biosensors

Japanese Journal of Clinical Chemistry, 40(4), 304–311. http://www.scopus.com/inward/record.url?eid=2-s2.0-82155186699&partnerID=MN8TOARS

By: A. Sakaguchi-Mikami, S. Ferri, W. Tsugawa & K. Sode

Source: ORCID
Added: October 9, 2020

2011 journal article

Review of glucose oxidases and glucose dehydrogenases: A bird's eye view of glucose sensing enzymes

Journal of Diabetes Science and Technology, 5(5), 1068–1076.

By: S. Ferri*, K. Kojima* & K. Sode

Source: ORCID
Added: October 9, 2020

2011 journal article

Screening of Aspergillus-derived FAD-glucose dehydrogenases from fungal genome database

Biotechnology Letters, 33(11), 2255–2263.

By: K. Mori*, M. Nakajima*, K. Kojima*, K. Murakami*, S. Ferri* & K. Sode

author keywords: Aspergillus; FAD; Glucose dehydrogenase; 3D structure
Source: ORCID
Added: October 9, 2020

2011 journal article

Tuning Fructosyl Peptidyl Oxidase into Dehydrogenase and Its Application for the Construction of an Enzyme Electrode

Bioelectronics, Biointerfaces, and Biomedical Applications 4, 35(7), 113–116.

By: S. Ferri*, E. Nibe*, Y. Miyamoto*, S. Kim*, W. Tsugawa* & K. Sode

Source: ORCID
Added: October 9, 2020

2010 journal article

Amino acid substitution at the substrate-binding subsite alters the specificity of the Phanerochaete chrysosporium cellobiose dehydrogenase

Biochemical and Biophysical Research Communications, 391(2), 1246–1250.

By: Desriani, S. Ferri* & K. Sode

author keywords: Cellobiose dehydrogenase; Cellobiose; Lactose; Phanerochaete chrysosporium
Source: ORCID
Added: October 9, 2020

2010 journal article

Constructing an improved pyrroloquinoline quinone glucose dehydrogenase binding aptamer for enzyme labeling

Biotechnology Letters, 32(9), 1293–1298.

By: K. Abe*, K. Sode & K. Ikebukuro*

author keywords: DNA aptamer; Electrochemical biosensors; Pyrroloquinoline quinone-dependent glucose dehydrogenase; G-quadruplex
Source: ORCID
Added: October 9, 2020

2010 journal article

Engineering of dye-mediated dehydrogenase property of fructosyl amino acid oxidases by site-directed mutagenesis studies of its putative proton relay system

Biotechnology Letters, 32(8), 1123–1129.

By: S. Kim*, E. Nibe*, S. Ferri*, W. Tsugawa* & K. Sode

author keywords: Biosensor; Dehydrogenase; Flavoprotein; Fructosyl amino acid oxidase (FAOD); Glycated protein; Proton relay system (PRS)
Source: ORCID
Added: October 9, 2020

2010 journal article

Functional expression of Phanerochaete chrysosporium cellobiose dehydrogenase flavin domain in Escherichia coli

Biotechnology Letters, 32(6), 855–859.

By: Desriani, S. Ferri* & K. Sode

author keywords: Cellobiose; Cellobiose dehydrogenase; Flavin domain; Phanerochaete chrysosporium
Source: ORCID
Added: October 9, 2020

2010 journal article

Motif-Based Search for a Novel Fructosyl Peptide Oxidase From Genome Databases

Biotechnology and Bioengineering, 106(3), 358–366.

By: S. Kim*, S. Ferri*, W. Tsugawa*, K. Mori* & K. Sode

author keywords: biosensor; diabetes; hemoglobin Alc (HbA1c); fructosyl amino acid oxidase (FAOD); fructosyl peptide oxidase (FPOX)
Source: ORCID
Added: October 9, 2020

2010 journal article

Pyrroloquinoline quinone inhibits the fibrillation of amyloid proteins

Prion, 4(1), 26–31. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000277180900005&KeyUID=WOS:000277180900005

By: J. Kim, M. Kobayashi, M. Fukuda, D. Ogasawara, N. Kobayashi, S. Han, C. Nakamura, M. Inada ...

Source: ORCID
Added: October 9, 2020

2010 journal article

Pyrroloquinoline quinone inhibits the fibrillation of amyloid proteins

Prion, 4(1).

By: J. Kim*, M. Kobayashi*, M. Fukuda*, D. Ogasawara*, N. Kobayashi*, S. Han*, C. Nakamura*, M. Inada* ...

author keywords: amyloid beta; amyloid fibril; cytotoxicity; fibril formation; inhibitor; prion; pyrroloquinoline quinone
Source: ORCID
Added: October 9, 2020

2010 journal article

Pyrroloquinoline quinone inhibits the fibrillation of amyloid proteins.

Prion, 4(1), 26–31. http://www.scopus.com/inward/record.url?eid=2-s2.0-77949286151&partnerID=MN8TOARS

By: J. Kim, M. Kobayashi, M. Fukuda, D. Ogasawara, N. Kobayashi, S. Han, C. Nakamura, M. Inada ...

Source: ORCID
Added: October 9, 2020

2010 journal article

Screening and Improvement of an Anti-VEGF DNA Aptamer

Molecules, 15(1), 215–225.

By: Y. Nonaka*, K. Sode & K. Ikebukuro

author keywords: aptamer; cancer diagnosis; sensor element; VEGF(121); VEGF(165)
Source: ORCID
Added: October 9, 2020

2010 journal article

Screening of DNA aptamer which binds to alpha-synuclein

Biotechnology Letters, 32(5), 643–648.

By: K. Tsukakoshi*, R. Harada*, K. Sode & K. Ikebukuro*

author keywords: alpha-Synuclein; Alzheimer's disease; DNA aptamer; Lewy bodies; Parkinson's disease
Source: ORCID
Added: October 9, 2020

2010 journal article

Selection of DNA aptamer against prostate specific antigen using a genetic algorithm and application to sensing

Biosensors & Bioelectronics, 26(4), 1386–1391.

By: N. Savory*, K. Abe*, K. Sode & K. Ikebukuro*

author keywords: DNA aptamer; Prostate specific antigen; Genetic algorithm; In silk maturation
Source: ORCID
Added: October 9, 2020

2010 journal article

The inhibitory effect of pyrroloquinoline quinone on the amyloid formation and cytotoxicity of truncated alpha-synuclein

Molecular Neurodegeneration, 5(1).

By: J. Kim*, R. Harada*, M. Kobayashi*, N. Kobayashi* & K. Sode

Source: ORCID
Added: October 9, 2020

2010 journal article

Uniform molecularly imprinted microspheres and nanoparticles prepared by precipitation polymerization: The control of particle size suitable for different analytical applications (vol 584, pg 112, 2007)

Analytica Chimica Acta, 657(2), 215.

By: K. Yoshimatsu*, K. Reimhult*, A. Krozer*, K. Mosbach*, K. Sode & L. Ye*

Source: ORCID
Added: October 9, 2020

2010 journal article

Wireless monitoring of blood glucose levels in flatfish with a needle biosensor

Fisheries Science, 76(4), 687–694.

By: H. Endo*, E. Takahashi*, M. Murata*, H. Ohnuki*, H. Ren*, W. Tsugawa*, K. Sode

author keywords: Biosensor; Fish; Glucose; Blood; Interstitial fluid; Flatfish; Monitoring; Determination
Source: ORCID
Added: October 9, 2020

2009 journal article

An Aptamer-Based Bound/Free Separation System for Protein Detection

Electroanalysis, 21(11), 1297–1302.

By: M. Fukasawa*, W. Yoshida*, H. Yamazaki*, K. Sode & K. Ikebukuro*

author keywords: Simple bound/free separation; Aptamers; Complementary strand-immobilized (CSI) beads; Structural change of aptamer; PQQGDH
Source: ORCID
Added: October 9, 2020

2009 journal article

BioCapacitor-A novel category of biosensor

Biosensors & Bioelectronics, 24(7), 1837–1842.

By: T. Hanashi, T. Yamazaki, W. Tsugawa, S. Ferri, D. Nakayama, M. Tomiyama, K. Ikebukuro, K. Sode

author keywords: Biofuel cells; Glucose dehydrogenase; Continuous glucose monitoring; Glucose sensor; Capacitor; Wireless sensing system
Source: ORCID
Added: October 9, 2020

2009 journal article

Cumulative effect of amino acid substitution for the development of fructosyl valine-specific fructosyl amine oxidase

Enzyme and Microbial Technology, 44(1), 52–56.

By: S. Kim*, S. Miura*, S. Ferri*, W. Tsugawa* & K. Sode

author keywords: Biosensor; Diabetes; Fructosyl amine oxidase; Hemoglobin A(1c) (HbA(1c)); Substrate specificity
Source: ORCID
Added: October 9, 2020

2009 journal article

DNA Aptamers that Bind to PQQGDH as an Electrochemical Labeling Tool

Electroanalysis, 21(11), 1303–1308.

By: Y. Osawa*, M. Takase*, K. Sode & K. Ikebukuro*

author keywords: DNA; Aptamers; Electrochemical biosensors; Pyrroquinoline quinone glucose dehydrogenase; Labeling; Aptamer blotting
Source: ORCID
Added: October 9, 2020

2009 journal article

Detection system based on the conformational change in an aptamer and its application to simple bound/free separation

Biosensors & Bioelectronics, 24(5), 1372–1376.

By: D. Ogasawara*, N. Hachiya*, K. Kaneko*, K. Sode & K. Ikebukuro*

author keywords: Aptamer; Conformational change; Bound/free separation; Prion protein
Source: ORCID
Added: October 9, 2020

2009 journal article

Kinetic Mechanism and Inhibitor Characterization of WNK1 Kinase

Biochemistry, 48(43), 10255–10266.

By: Y. Yagi*, K. Abe*, K. Ikebukuro* & K. Sode

Source: ORCID
Added: October 9, 2020

2009 journal article

Review of fructosyl amino acid oxidase engineering research: A glimpse into the future of hemoglobin A1c biosensing

Journal of Diabetes Science and Technology, 3(3), 585–592.

By: S. Ferri*, S. Kim*, W. Tsugawa* & K. Sode

Source: ORCID
Added: October 9, 2020

2009 journal article

Selection of DNA aptamers against insulin and construction of an aptameric enzyme subunit for insulin sensing

Biosensors & Bioelectronics, 24(5), 1116–1120.

By: W. Yoshida*, E. Mochizuki*, M. Takase*, H. Hasegawa*, Y. Morita*, H. Yamazaki*, K. Sode, K. Ikebukuro*

author keywords: Insulin-binding aptamer; G-quartet library; Aptameric enzyme subunit; Insulin detection
Source: ORCID
Added: October 9, 2020

2009 journal article

The construction of a glucose-sensing luciferase

Biosensors & Bioelectronics, 25(1), 76–81.

By: A. Taneoka*, A. Sakaguchi-Mikami*, T. Yamazaki*, W. Tsugawa* & K. Sode

author keywords: Biosensor; Bioluminescence; Glucose sensing; Glucose-sensing molecule; Galactose-/glucose-binding protein; GGBP; Split luciferases
Source: ORCID
Added: October 9, 2020

2009 journal article

The effect of amino acid substitution in the imperfect repeat sequences of alpha-synuclein on fibrillation

Biochimica Et Biophysica Acta-Molecular Basis of Disease, 1792(10), 998–1003.

By: R. Harada*, N. Kobayashi*, J. Kim*, C. Nakamura*, S. Han*, K. Ikebukuro*, K. Sode

author keywords: Parkinson's disease; alpha-Synuclein; Fibrillation; E46K; Imperfect repeat sequences
Source: ORCID
Added: October 9, 2020

2009 journal article

The inhibition of amyloid fibrillation using the proteolytic products of PQQ-modified α-synuclein

Open Biotechnology Journal, 3, 40–45.

By: N. Kobayashi, J. Kim, K. Ikebukuro & K. Sode

Source: ORCID
Added: October 9, 2020

2009 journal article

Wireless enzyme sensor system for real-time monitoring of blood glucose levels in fish

Biosensors & Bioelectronics, 24(5), 1417–1423.

By: H. Endo, Y. Yonemori, K. Hibi, H. Ren, T. Hayashi, W. Tsugawa, K. Sode

author keywords: Biosensor; Enzyme sensor; Glucose; Blood; Wireless; Telemetory; Real-time; Monitoring; Fish
Source: ORCID
Added: October 9, 2020

2009 journal article

Zn finger-based direct detection system for PCR products of Salmonella spp. and the Influenza A virus

Biotechnology Letters, 31(5), 735.

By: Y. Osawa*, K. Ikebukuro*, T. Kumagai*, H. Motoki*, T. Matsuo*, M. Horiuchi*, K. Sode

Source: ORCID
Added: October 9, 2020

2009 journal article

Zn finger-based direct detection system for PCR products of Salmonella spp. and the Influenza A virus

Biotechnology Letters, 31(5), 725–733.

By: Y. Osawa*, K. Ikebukuro* & K. Sode

author keywords: Influenza A virus; PCR products; Salmonella spp.; Zn finger protein
Source: ORCID
Added: October 9, 2020

2008 journal article

Aggregation and fibrillation study of a-synuclein under applied voltage

Electrochemistry, 76(8), 614–618.

By: Y. Osawa*, K. Ikebukuro*, N. Kobayashi*, S. Han*, C. Nakamura* & K. Sode

author keywords: aggregation; application of voltage; alpha-synuclein; natively unfolded protein
Source: ORCID
Added: October 9, 2020

2008 journal article

Aptameric enzyme subunit for homogeneous DNA sensing

Biotechnology Letters, 30(2), 243–252.

By: K. Ikebukuro*, W. Yoshida* & K. Sode

author keywords: aptameric enzyme subunit; enzyme-inhibiting aptamer; homogeneous DNA sensing
Source: ORCID
Added: October 9, 2020

2008 journal article

Biofuel cell system employing thermostable glucose dehydrogenase

Biotechnology Letters, 30(10), 1753–1758.

By: J. Okuda-Shimazaki*, N. Kakehi*, T. Yamazaki*, M. Tomiyama* & K. Sode

author keywords: biofuel cell; glucose dehydrogenase; direct electron transfer
Source: ORCID
Added: October 9, 2020

2008 book

Biosensors Using the Aptameric Enzyme Subunit: The Use of Aptamers in the Allosteric Control of Enzymes

In Aptamers in Bioanalysis (pp. 129–138).

By: K. Ikebukuro*, W. Yoshida* & K. Sode

Source: ORCID
Added: October 9, 2020

2008 journal article

Construction and Characterization of Direct Electron Transfer-Type Continuous Glucose Monitoring System Employing Thermostable Glucose Dehydrogenase Complex

Analytical Letters, 41(13), 2363–2373.

By: T. Yamazaki*, J. Okuda-Shimazaki*, C. Sakata*, T. Tsuya* & K. Sode

author keywords: Burkhorderia cepacia glucose dehydrogenase; continuous glucose monitoring (CGM); cytochrome c; direct electron transfer; glucose sensor
Source: ORCID
Added: October 9, 2020

2008 journal article

Development of a compact stacked flatbed reactor with immobilized high-density bacteria for hydrogen production

International Journal of Hydrogen Energy, 33(5), 1593–1597.

By: M. Ishikawa*, S. Yamamura*, R. Ikeda*, Y. Takamura*, K. Sode, E. Tamiya*, M. Tomiyama*

author keywords: bio-hydrogen; flatbed bioreactor; cell immobilization
Source: ORCID
Added: October 9, 2020

2008 journal article

Development of fructosyl amine oxidase specific to fructosyl valine by site-directed mutagenesis

Protein Engineering Design & Selection, 21(4), 233–239.

By: S. Miura*, S. Ferri*, W. Tsugawa*, S. Kim* & K. Sode

author keywords: active site; biosensor; docking; fructosyl amine oxidase; substrate specificity
Source: ORCID
Added: October 9, 2020

2008 journal article

Engineering of ligand specificity of periplasmic binding protein for glucose sensing

Biotechnology Letters, 30(8), 1453–1460.

By: A. Sakaguchi-Mikami*, A. Taneoka*, R. Yamoto*, S. Ferri* & K. Sode

author keywords: biosensor; blood glucose monitoring; fluorescence; galactose; glucose-binding protein (GGBP); periplasmic binding protein
Source: ORCID
Added: October 9, 2020

2008 journal article

Improvement of aptamer affinity by dimerization

Sensors, 8(2), 1090–1098.

By: H. Hasegawa*, K. Taira*, K. Sode & K. Ikebukuro*

author keywords: aptamer; dimerization; avidity
Source: ORCID
Added: October 9, 2020

2008 journal article

Label-free homogeneous detection of immunoglobulin E by an aptameric enzyme subunit

Biotechnology Letters, 30(3), 421–425.

By: W. Yoshida*, K. Sode & K. Ikebukuro*

author keywords: aptameric enzyme subunit; enzyme-inhibiting aptamer; protein detection; immunoglobulin E
Source: ORCID
Added: October 9, 2020

2008 journal article

Methanogenesis from acetate and propionate by thermophilic down-flow anaerobic packed-bed reactor

Bioresource Technology, 99(11), 4786–4795.

By: M. Tatara*, T. Makiuchi*, Y. Ueno*, M. Goto* & K. Sode

author keywords: anaerobic digestion; propionate; methanogenic microllora; packed-bed reactor; syntroph
Source: ORCID
Added: October 9, 2020

2008 journal article

Nanostructure fabrication based on engineered α-synuclein

Nanobiotechnology, 4(1-4), 50–55.

By: N. Kobayashi*, S. Han*, C. Nakamura* & K. Sode

Source: ORCID
Added: October 9, 2020

2008 journal article

Operational condition of a molecular imprinting catalyst-based fructosyl-valine sensor

Electrochemistry, 76(8), 590–593.

By: T. Yamazaki*, S. Ohta* & K. Sode

author keywords: glycated hemoglobin; fructosyl amino acid; molecular imprinting catalyst; artificial dehydrogenase; amperometric sensor
Source: ORCID
Added: October 9, 2020

2008 journal article

Propionate sensor using coenzyme-A transferase and acyl-CoA oxidase

Protein and Peptide Letters, 15(8), 779–781.

By: K. Sode, W. Tsugawa, M. Aoyagi, E. Rajashekhara & K. Watanabe

author keywords: propionate; volatile fatty acid; propionate CoA transferase; short-chain acyl-CoA oxidase; amperometry; enzyme sensor
Source: ORCID
Added: October 9, 2020

2008 journal article

Selection of DNA aptamers against VEGF(165) using a protein competitor and the aptamer blotting method

Biotechnology Letters, 30(5), 829–834.

By: H. Hasegawa*, K. Sode & K. Ikebukuro*

author keywords: aptamer blotting; cancer diagnosis; competitor; DNA aptamer; sensor element; VEGF165
Source: ORCID
Added: October 9, 2020

2008 journal article

Site directed mutagenesis studies of FAD-dependent glucose dehydrogenase catalytic subunit of Burkholderia cepacia

Biotechnology Letters, 30(11), 1967–1972.

By: H. Yamaoka*, Y. Yamashita*, S. Ferri* & K. Sode

author keywords: diabetes; glucose dehydrogenase; glucose sensor; substrate specificity
Source: ORCID
Added: October 9, 2020

2008 journal article

The simple and rapid detection of specific PCR products from bacterial genomes using Zn finger proteins

Nucleic Acids Research, 36(11).

By: Y. Osawa*, K. Ikebukuro*, H. Motoki*, T. Matsuo*, M. Horiuchi* & K. Sode

Source: ORCID
Added: October 9, 2020

2008 journal article

Zinc finger protein-based detection system of PCR products for pathogen diagnosis.

Nucleic Acids Symposium Series (2004), (52), 23–24.

By: Y. Osawa*, H. Motoki*, T. Matsuo*, M. Horiuchi*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2007 journal article

A novel wireless glucose sensor employing direct electron transfer principle based enzyme fuel cell

Biosensors & Bioelectronics, 22(9-10), 2250–2255.

By: N. Kakehi*, T. Yamazaki*, W. Tsugawa* & K. Sode

author keywords: glucose dehydrogenase; continuous glucose monitoring; bio-fuel cell; glucose sensor; direct electron transfer
Source: ORCID
Added: October 9, 2020

2007 journal article

Aptameric enzyme subunit for homogeneous protein sensing.

Nucleic Acids Symposium Series (2004), (51), 99–100. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:18029605&KeyUID=MEDLINE:18029605

By: W. Yoshida, K. Sode & K. Ikebukuro

Source: ORCID
Added: October 9, 2020

2007 journal article

Branched-chain amino acid biosensing using fluorescent modified engineered leucine/isoleucine/valine binding protein

International Journal of Molecular Sciences, 8(6), 513–525.

By: S. Chino*, A. Sakaguchi*, R. Yamoto*, S. Ferri* & K. Sode

author keywords: periplasmic binding proteins (PBPs); biosensor; fluorescence; leucine/isoleucine/valine-binding protein (LIVBP); branched-chain amino acid (BCAA)
Source: ORCID
Added: October 9, 2020

2007 journal article

Construction of target molecule sensing system using aptameric enzyme subunit based on PQQGDH activity.

Nucleic Acids Symposium Series (2004), (51), 401–402. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:18029756&KeyUID=MEDLINE:18029756

By: K. Ikebukuro, Y. Morita, W. Yoshida & K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

Effect of reparation of repeat sequences in the human α-synuclein on fibrillation ability

International Journal of Biological Sciences, 3(1), 1–7.

By: K. Sode, S. Ochiai, N. Kobayashi & E. Usuzaka

Source: ORCID
Added: October 9, 2020

2007 journal article

In silico panning for a non-competitive peptide inhibitor

Bmc Bioinformatics, 8.

By: Y. Yagi*, K. Terada*, T. Noma*, K. Ikebukuro* & K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

Novel fluorescent sensing system for alpha-fructosyl amino acids based on engineered fructosyl amino acid binding protein

Biosensors & Bioelectronics, 22(9-10), 1933–1938.

By: A. Sakaguchi*, S. Ferri*, W. Tsugawa* & K. Sode

author keywords: diabetes; hemoglobin A1c (HbA1c); sensing system; alpha-fructosyl amino acid; periplasmic binding proteins (PBPs); fructosyl amino acid binding protein (FABP)
Source: ORCID
Added: October 9, 2020

2007 journal article

Peptide ligand screening of alpha-synuclein aggregation modulators by in silico panning

Bmc Bioinformatics, 8.

By: K. Abe*, N. Kobayashi*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2007 journal article

Production of hydrogen and methane from organic solid wastes by phase-separation of anaerobic process

Bioresource Technology, 98(9), 1861–1865.

By: Y. Ueno*, M. Tatara*, H. Fukui*, T. Makiuchi*, M. Goto* & K. Sode

author keywords: anaerobic digestion; hydrogen fermentation; methane fermentation; organic solid wastes; packed-bed reactor
Source: ORCID
Added: October 9, 2020

2007 journal article

SPCE based glucose sensor employing novel thermostable glucose dehydrogenase, FADGDH: Blood glucose measurement with 150nL sample in one second

Journal of Diabetes Science and Technology, 1(1), 28–35.

By: H. Yamaoka* & K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

Screening of DNA aptamer against mouse prion protein by competitive selection.

Prion, 1(4), 248–254.

By: D. Ogasawara*, H. Hasegawa*, K. Kaneko*, K. Sode & K. Ikebukuro*

author keywords: aptamer; DNA; SELEX; competitive selection; prion protein; beta-PrP; detection
Source: ORCID
Added: October 9, 2020

2007 journal article

Selection and characterization of DNA aptamers against VEGF165 with aptamer blotting method and its application.

Nucleic Acids Symposium Series (2004), (51), 399–400.

By: K. Ikebukuro*, H. Hasegawa* & K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

Selection of DNA aptamers that inhibit enzymatic activity of PQQGDH and its application.

Nucleic Acids Symposium Series (2004), (51), 403–404. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:18029757&KeyUID=MEDLINE:18029757

By: K. Ikebukuro, M. Takase & K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

Specific detection of PCR product from Legionella pneumophila strain Philadelphia1 using zinc finger protein Sp2.

Nucleic Acids Symposium Series (2004), (51), 285–286. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:18029698&KeyUID=MEDLINE:18029698

By: K. Ikebukuro, T. Kumagai, H. Motoki, Y. Osawa, T. Matuo, M. Horiuchi, K. Sode

Source: ORCID
Added: October 9, 2020

2007 journal article

The application of engineered glucose dehydrogenase to a direct electron-transfer-type continuous glucose monitoring system and a compartmentless biofuel cell

Analytical Letters, 40(3), 431–440.

By: J. Okuda*, T. Yamazaki*, M. Fukasawa*, N. Kakehi* & K. Sode

author keywords: fuel cells; glucose dehydrogenase; continuous glucose monitoring; direct electron transfer; cytochrome c domain
Source: ORCID
Added: October 9, 2020

2007 journal article

Uniform molecularly imprinted microspheres and nanoparticles prepared by precipitation polymerization: The control of particle size suitable for different analytical applications

Analytica Chimica Acta, 584(1), 112–121.

By: K. Yoshimatsu*, K. Reimhult*, A. Krozer*, K. Mosbach*, K. Sode & L. Ye*

author keywords: molecular imprinting; precipitation polymerization; propranolol; assay; nanoparticles
Source: ORCID
Added: October 9, 2020

2007 journal article

W-motif exchange between beta-propeller proteins

Protein Journal, 26(3), 153–158.

By: A. Tachino*, S. Igarashi* & K. Sode

author keywords: beta-propeller protein; W-motif; motif exchange; chimeric enzyme; molecular evolution
Source: ORCID
Added: October 9, 2020

2006 journal article

A screening method for DNA aptamers that bind to specific, unidentified protein in tissue samples

Biotechnology Letters, 28(17), 1377–1381.

By: T. Noma*, K. Ikebukuro*, K. Sode, T. Ohkubo*, Y. Sakasegawa*, N. Hachiya*, K. Kaneko*

author keywords: aptamer; electrophoresis blotting; multiple target proteins; systematic evolution of ligands by exponential enrichment
Source: ORCID
Added: October 9, 2020

2006 journal article

Active site analysis of fructosyl amine oxidase using homology modeling and site-directed mutagenesis

Biotechnology Letters, 28(23), 1895–1900.

By: S. Miura*, S. Ferri*, W. Tsugawa*, S. Kiin & K. Sode

author keywords: biosensor; diabetes; fructosyl amine oxidase; HbA1c; substrate specificity
Source: ORCID
Added: October 9, 2020

2006 journal article

Analysis of the evolution of the thrombin-inhibiting DNA aptamers using a genetic algorithm

Biotechnology Letters, 28(23), 1933–1937.

By: K. Ikebukuro*, W. Yoshida*, T. Noma* & K. Sode

author keywords: aptamer; genetic algorithm; G-quartet structure; inhibitor; systematic; evolution of ligands by exponential enrichment
Source: ORCID
Added: October 9, 2020

2006 journal article

Aptameric enzyme subunit for biosensing based on enzymatic activity measurement

Analytical Chemistry, 78(10), 3296–3303.

By: W. Yoshida*, K. Sode & K. Ikebukuro*

Source: ORCID
Added: October 9, 2020

2006 journal article

Characterization and application of aptamers for Taq DNA polymerase selected using an evolution-mimicking algorithm

Biotechnology Letters, 28(23), 1939–1944.

By: T. Noma*, K. Sode & K. Ikebukuro*

author keywords: aptamer; evolution-mimicking algorithm; hot-start PCR
Source: ORCID
Added: October 9, 2020

2006 journal article

Cloning and functional expression of glucose dehydrogenase complex of Burkholderia cepacia in Escherichia coli

Journal of Biotechnology, 123(2), 127–136.

By: T. Tsuya*, S. Ferri*, M. Fujikawa*, H. Yamaoka* & K. Sode

author keywords: electron transfer subunit; gene cluster; glucose dehydrogenase; respiration
Source: ORCID
Added: October 9, 2020

2006 journal article

Development of a compact high-density microbial hydrogen reactor for portable bio-fuel cell system

International Journal of Hydrogen Energy, 31(11), 1484–1489.

By: M. Ishikawa*, S. Yamamura*, Y. Takamura*, K. Sode, E. Tamiya* & M. Tomiyama*

author keywords: biohydrogen; bioreactor; cell immobilization; bio-fuel cell
Source: ORCID
Added: October 9, 2020

2006 journal article

Homogeneous DNA sensing using enzyme-inhibiting DNA aptamers

Biochemical and Biophysical Research Communications, 348(1), 245–252.

By: W. Yoshida*, K. Sode & K. Ikebukuro*

author keywords: homogeneous DNA sensing; enzyme-inhibiting DNA aptamers; aptameric enzyme subunit; SARS detection; thrombin-inhibiting aptamer
Source: ORCID
Added: October 9, 2020

2006 journal article

Pyrroloquinoline quinone (PQQ) prevents fibril formation of alpha-synuclein

Biochemical and Biophysical Research Communications, 349(3), 1139–1144.

By: M. Kobayashi*, J. Kim*, N. Kobayashi*, S. Han*, C. Nakamura*, K. Ikebukuro*, K. Sode

author keywords: Parkinson's disease; alpha-synuclein; pyrroloquinoline quinone; amyloid fibril; thioflavin T
Source: ORCID
Added: October 9, 2020

2006 journal article

Volatile fatty acid-sensing system involving coenzyme-A transferase

Biotechnology Progress, 22(1), 334–337.

By: E. Rajashekhara, A. Hosoda, K. Sode, H. Ikenaga & K. Watanabe

Source: ORCID
Added: October 9, 2020

2005 journal article

Construction of artificial cyclic amide amidohydrolases using molecular imprinting technique

Biotechnology Letters, 27(7), 471–475.

By: Z. Meng*, T. Yamazaki* & K. Sode

author keywords: artificial enzyme; creatininase; cyclic amide amidohydrolase; hydantoinase; molecular imprinting
Source: ORCID
Added: October 9, 2020

2005 journal article

Development of a novel glucose enzyme fuel cell system employing protein engineered PQQ glucose dehydrogenase

Biosensors & Bioelectronics, 20(10), 2145–2150.

By: N. Yuhashi*, M. Tomiyama*, J. Okuda*, S. Igarashi*, K. Ikebukuro* & K. Sode

author keywords: enzyme fuel cell; PQQ glucose dehydrogenase; protein engineering; bilirubin oxidase; stability
Source: ORCID
Added: October 9, 2020

2005 journal article

Development of a novel sensing probe using DNA aptamer inhibiting enzymatic activity.

Nucleic Acids Symposium Series (2004), (49), 83–84. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:17150644&KeyUID=MEDLINE:17150644

By: K. Ikebukuro, W. Yoshida & K. Sode

Source: ORCID
Added: October 9, 2020

2005 journal article

Engineered alpha-synuclein prevents wild type and familial Parkin variant fibril formation

Biochemical and Biophysical Research Communications, 335(2), 432–436.

By: K. Sode, E. Usuzaka*, N. Kobayashi* & S. Ochial

author keywords: alpha-synuclein; amyloid fibril; site-directed mutagenesis; natively unfolded protein; Parkinson's disease
Source: ORCID
Added: October 9, 2020

2005 journal article

High-rate thermophilic methane fermentation on short-chain fatty acids in a down-flow anaerobic packed-bed reactor

Bioprocess and Biosystems Engineering, 27(2), 105–113.

By: M. Tatara*, A. Yamazawa*, Y. Ueno*, H. Fukui*, M. Goto* & K. Sode

author keywords: thermophilic methane fermentation; short-chain fatty acids; short HRTs; high organic loading rate; supporting media
Source: ORCID
Added: October 9, 2020

2005 journal article

Increasing stability of water-soluble PQQ glucose dehydrogenase by increasing hydrophobic interaction at dimeric interface

BMC Biochemistry, 6.

By: S. Tanaka*, S. Igarashi*, S. Ferri* & K. Sode

Source: ORCID
Added: October 9, 2020

2005 journal article

Isolation and characterization of a fructosyl-amine oxidase from an Arthrobacter sp.

Biotechnology Letters, 27(1), 27–32.

By: S. Ferri*, A. Sakaguchi*, H. Goto*, W. Tsugawa* & K. Sode

author keywords: Arthrobacter; biosensor; diabetes; fructosyl-amine oxidase; hemoglobin A1c
Source: ORCID
Added: October 9, 2020

2005 journal article

Novel electrochemical sensor system for protein using the aptamers in sandwich manner

Biosensors & Bioelectronics, 20(10), 2168–2172.

By: K. Ikebukuro*, C. Kiyohara* & K. Sode

author keywords: aptamer; sandwich manner; electrochemical detection; pyrroquinoline quinone glucose dehydrogenase ((PQQ)GDH)
Source: ORCID
Added: October 9, 2020

2005 journal article

Screening of DNA aptamers against multiple proteins in tissue.

Nucleic Acids Symposium Series (2004), (49), 357–358. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:17150781&KeyUID=MEDLINE:17150781

By: T. Noma, K. Ikebukuro, K. Sode, T. Ohkubo, Y. Sakasegawa, N. Hachiya, K. Kaneko

Source: ORCID
Added: October 9, 2020

2005 journal article

SocA is a novel periplasmic binding protein for fructosyl amino acid

Biochemical and Biophysical Research Communications, 336(4), 1074–1080.

By: A. Sakaguchi*, S. Ferri* & K. Sode

author keywords: glycation; diabetes; fructosyl amino acid; sensor; bacterial periplasmic binding protein; SocA; Agrobacterium tumefaciens; conformational change; autofluorescence
Source: ORCID
Added: October 9, 2020

2005 journal article

The molecular reaction vessels for a transesterification process created by molecular imprinting technique

Journal of Molecular Recognition, 18(3), 262–266.

By: Z. Meng* & K. Sode

author keywords: molecular imprinting; molecular reaction vessel; molecular recognition; polymeric catalyst; transesterification
Source: ORCID
Added: October 9, 2020

2004 journal article

A molecularly imprinted catalyst designed by a computational approach in catalysing a transesterification process

Biosensors & Bioelectronics, 20(6), 1068–1075.

By: Z. Meng*, T. Yamazaki* & K. Sode

author keywords: artificial enzymes; lipase; molecular imprinting; molecular modelling; transesterification
Source: ORCID
Added: October 9, 2020

2004 journal article

Cloning and expression of fructosyl-amine oxidase from marine yeast Pichia species N1-1

Marine Biotechnology, 6(6), 625–632.

By: S. Ferri*, S. Miura*, A. Sakaguchi*, F. Ishimura*, W. Tsugawa* & K. Sode

author keywords: fructosyl-amine oxidase; marine yeast; Pichia
Source: ORCID
Added: October 9, 2020

2004 journal article

Construction and characterization of heterodimeric, soluble quinoprotein glucose dehydrooenase

Journal of Biochemical and Biophysical Methods, 61(3), 331–338.

By: S. Igarashi* & K. Sode

author keywords: pyrroloquinoline quinone (PQQ); glucose dehydrogenase (GDH); heterodimer cooperativity
Source: ORCID
Added: October 9, 2020

2004 journal article

Development of a novel DNA sensing system using DNA aptamer inhibited enzymatic activity 1.

Nucleic Acids Symposium Series (2004), (48), 231–232. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:17150563&KeyUID=MEDLINE:17150563

By: K. Ikebukuro, W. Yoshida & K. Sode

Source: ORCID
Added: October 9, 2020

2004 journal article

Development of a novel DNA sensing system using DNA aptamer that inhibits enzymatic activity 2.

Nucleic Acids Symposium Series (2004), (48), 309–310. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:17150602&KeyUID=MEDLINE:17150602

By: K. Ikebukuro, W. Yoshida, T. Noma & K. Sode

Source: ORCID
Added: October 9, 2020

2004 journal article

Electrochemical detection of protein using a double aptamer sandwich

Analytical Letters, 37(14), 2901–2909.

By: K. Ikebukuro*, C. Kiyohara* & K. Sode

author keywords: thrombin; aptamer; sandwich system; electrochemical detection
Source: ORCID
Added: October 9, 2020

2004 journal article

Engineered PQQ glucose dehydrogenase based enzyme sensor for continuous glucose monitoring

Analytical Letters, 37(9), 1847–1857.

By: J. Okuda*, J. Wakai*, S. Igarashi* & K. Sode

author keywords: continuous glucose monitoring (CGM); PQQ glucose dehydrogenase (PQQGDH); glucose sensor; cytochrome b(562) (cyt b(562))
Source: ORCID
Added: October 9, 2020

2004 journal article

Engineering PQQ glucose dehydrogenase with improved substrate specificity site-directed mutagenesis studies on the active center of PQQ glucose dehydrogenase

Biomolecular Engineering, 21(2), 81–88.

By: S. Igarashi*, T. Hirokawa* & K. Sode

author keywords: pyrroloquinoline quinone (PQQ); glucose dehydrogenase (GDH); substrate specificity; protein engineering
Source: ORCID
Added: October 9, 2020

2004 journal article

Essential role of the small subunit of thermostable glucose dehydrogenase from Burkholderia cepacia

Biotechnology Letters, 26(22), 1757–1761.

By: H. Yamaoka*, S. Ferri*, M. Fujikawa* & K. Sode

author keywords: chaperone; flavoenzyme; glucose dehydrogenase; twin-arginine translocase
Source: ORCID
Added: October 9, 2020

2004 journal article

Highly sensitive detection of DNA hybridization using enzyme electrode

Electrochemistry, 72(8), 598–600. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223239200012&KeyUID=WOS:000223239200012

By: W. Ikebukuro & K. Sode

Source: ORCID
Added: October 9, 2020

2004 journal article

Molecular engineering of PQQGDH and its applications

Archives of Biochemistry and Biophysics, 428(1), 52–63.

By: S. Igarashi*, J. Okuda*, K. Ikebukuro* & K. Sode

Source: ORCID
Added: October 9, 2020

2004 journal article

PQQ glucose dehydrogenase with novel electron transfer ability

Biochemical and Biophysical Research Communications, 314(3), 793–797.

By: J. Okuda* & K. Sode

author keywords: PQQ glucose dehydrogenase; cytochrome; electron transfer; glucose sensor; direct electron transfer type sensor
Source: ORCID
Added: October 9, 2020

2003 journal article

Amperometric Glucose Sensor Using Thermostable Co-Factor Binding Glucose Dehydrogenase

IEEJ Transactions on Sensors and Micromachines, 123(6), 185–189.

By: Y. Nakazawa*, T. Yamazaki*, W. Tsugawa*, K. Ikebukuro* & K. Sode

Source: ORCID
Added: October 9, 2020

2003 journal article

Cloning and expression of the gene encoding catalytic subunit of thermostable glucose dehydrogenase from Burkholderia cepacia in Escherichia coli

Biochimica Et Biophysica Acta-Proteins and Proteomics, 1645(2), 133–138.

By: K. Inose*, M. Fujikawa*, T. Yaniazaki, K. Kojima* & K. Sode

author keywords: glucose dehydrogenase; thermal stability; catalytic subunit; FAD
Source: ORCID
Added: October 9, 2020

2003 journal article

Construction of a molecular imprinting catalyst using target analogue template and its application for an amperometric fructosylamine sensor

Biosensors & Bioelectronics, 18(12), 1485–1490.

By: K. Sode, S. Ohta*, Y. Yanai* & T. Yamazaki*

author keywords: molecularly imprinted polymer; hemoglobin A1c; amperometric sensor; fructosylamine compound; analogue compound
Source: ORCID
Added: October 9, 2020

2003 journal article

Development of highly-sensitive fructosyl-valine enzyme sensor employing recombinant fructosyl amine oxidase

Electrochemistry, 71(6), 442–445. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000183761100019&KeyUID=WOS:000183761100019

By: A. Sakaguchi, W. Tsugawa, S. Ferri & K. Sode

Source: ORCID
Added: October 9, 2020

2003 journal article

Electrochemical DNA sensor using genetically engineered thermostable pyrroloquinoline quinone glucose dehydrogenase

Electrochemistry, 71(6), 490–495. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000183761100029&KeyUID=WOS:000183761100029

By: K. Ikebukuro, Y. Saito, S. Igarashi & K. Sode

Source: ORCID
Added: October 9, 2020

2003 journal article

Enhancement of the catalytic activity of an artificial phosphotriesterase using a molecular imprinting technique

Biotechnology Letters, 25(13), 1075–1080.

By: Z. Meng*, T. Yamazaki* & K. Sode

author keywords: artificial enzyme; imidazole; molecular imprinting; Paraoxon; phosphotriesterase
Source: ORCID
Added: October 9, 2020

2003 journal article

Glucose enzyme electrode using cytochrome b(562) as an electron mediator

Biosensors & Bioelectronics, 18(5-6), 699–704.

By: J. Okuda*, J. Wakai*, N. Yuhashi* & K. Sode

author keywords: glucose enzyme sensor; electron transfer; Escherichia coli cytochrome b(562); PQQ glucose dehydrogenase; glucose oxidase
Source: ORCID
Added: October 9, 2020

2003 journal article

Improved substrate specificity of water-soluble pyrroloquinoline quinone glucose dehydrogenase by a peptide ligand

Biotechnology Letters, 25(4), 301–305.

By: H. Yoshida*, Y. Yagi*, K. Ikebukuro* & K. Sode

author keywords: peptide ligand; phage display; PQQ-glucose dehydrogenase; quaternary structure design; substrate specificity
Source: ORCID
Added: October 9, 2020

2003 journal article

Molecular imprinting catalyst based artificial enzyme sensor for fructosylamines

Analytical Letters, 36(1), 75–89.

By: T. Yamazaki*, S. Ohta*, Y. Yanai* & K. Sode

Source: ORCID
Added: October 9, 2020

2003 journal article

Relationship between serum N-carbamoyl-beta-D-glucopyranosylamine level and renal failure

Renal Failure, 25(1), 115–121.

By: T. Hamafuji*, W. Tsugawa* & A. Sode*

author keywords: hemodialysis; N-carbamoyl-beta-D-glucopyranosylamine; glucose 3-dehydrogenasa
Source: ORCID
Added: October 9, 2020

2003 journal article

Stabilization of quaternary structure of water-soluble quinoprotein glucose dehydrogenase

Molecular Biotechnology, 24(2), 97–103.

By: S. Igarashi & K. Sode

author keywords: pyrroloquinoline quinone (PQQ); glucose dehydrogenase (GDH); thermal stability; dimmer interface; subunit-subunit interaction
Source: ORCID
Added: October 9, 2020

2003 journal article

Surface charge engineering of PQQ glucose dehydrogenase for downstream processing

Biotechnology Letters, 25(20), 1695–1701.

By: H. Koh*, S. Igarashi* & K. Sode

author keywords: downstream process; poly-arginine tail (Arg-tail); pyrroloquinoline quinone glucose dehydrogenase; (PQQGDH); surface charge engineering
Source: ORCID
Added: October 9, 2020

2002 journal article

Amperometric DNA sensor using the pyrroquinoline quinone glucose dehydrogenase-avidin conjugate

Biosensors & Bioelectronics, 17(11-12), 1075–1080.

By: K. Ikebukuro*, Y. Kohiki* & K. Sode

author keywords: pyrroquinoline quinone glucose dehydrogenase ((PQQ)GDH); DNA sensor; amperometry; (PQQ)GDH-avidin conjugate; Salmonella virulence invA gene; carbon paste electrode
Source: ORCID
Added: October 9, 2020

2002 journal article

Clinical application of the serum 1,5-anhydroglucitol assay method using glucose 3-dehydrogenase

Journal of Clinical Laboratory Analysis, 16(6), 299–303.

By: T. Hamafuji*, W. Tsugawa* & K. Sode

author keywords: 1,5-anhydroglucitol; glucose 3-dehydrogenase; clinical analysis; validation
Source: ORCID
Added: October 9, 2020

2002 journal article

Construction of engineered water-soluble PQQ glucose dehydrogenase with improved substrate specificity

Biocatalysis and Biotransformation, 20(6), 405–412.

By: K. Sode, S. Igarashi*, A. Morimoto* & H. Yoshida*

author keywords: pyrroloquinoline quinone (PQQ); glucose dehydrogenase; substrate specificity; protein engineering; glucose sensor; beta-propeller protein
Source: ORCID
Added: October 9, 2020

2002 journal article

Development of a flow-injection analysis (FIA) enzyme sensor for fructosyl amine monitoring

Analytical and Bioanalytical Chemistry, 373(4-5), 211–214.

By: K. Ogawa*, D. Stollner*, F. Scheller*, A. Warsinke*, F. Ishimura*, W. Tsugawa*, S. Ferri*, K. Sode

author keywords: enzyme sensor; glycated hemoglobin; fructosyl amine; fructosyl amine oxidase; FIA system
Source: ORCID
Added: October 9, 2020

2002 journal article