Works (30)

Updated: February 6th, 2024 05:02

2024 article

Cell-material interactions in 3D bioprinted plant cells

Madison, I., Tahir, M., Broeck, L. V., Phan, L., Horn, T., & Sozzani, R. (2024, February 1).

By: I. Madison, M. Tahir, L. Broeck, L. Phan, T. Horn & R. Sozzani

Source: ORCID
Added: February 2, 2024

2023 journal article

Functional annotation of proteins for signaling network inference in non-model species

Nature Communications, 14(1).

By: L. Van den Broeck n, D. Bhosale n, K. Song n, C. Fonseca de Lima*, M. Ashley n, T. Zhu*, S. Zhu*, B. Van De Cotte* ...

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸
Sources: Web Of Science, ORCID, Crossref
Added: September 5, 2023

2023 article proceedings

Optimal Brain Dissection in Dense Autoencoders: Towards Determining Feature Importance in -Omics Data

Presented at the 2023 IEEE 5th International Conference on BioInspired Processing (BIP).

By: F. Amin n, L. Van den Broeck*, I. De Smet*, A. Locke* & R. Sozzani n

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸

Event: 2023 IEEE 5th International Conference on BioInspired Processing (BIP)

Sources: ORCID, Crossref
Added: January 25, 2024

2023 article

Phosphate starvation: response mechanisms and solutions

Madison, I., Gillan, L., Peace, J., Gabrieli, F., Broeck, L., Jones, J. L., & Sozzani, R. (2023, August 23). (D. Ort, Ed.). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 8.

co-author countries: Italy 🇮🇹 United States of America 🇺🇸

Ed(s): D. Ort

author keywords: Nutrient uptake; nutrient sensing; phosphorus; Pi
Sources: ORCID, Web Of Science
Added: September 18, 2023

2023 conference paper

Prediction and functional characterization of transcriptional activation domains

Mahatma, S., Broeck, L. V., Morffy, N., Staller, M. V., Strader, L. C., & Sozzani, R. (2023, March 22).

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 25, 2024

2023 article

Quantitative Modeling of the Short-Term Response to Nitrogen Availability that Coordinates Early Events in Lateral Root Initiation

Gaudinier, A., Broeck, L. V., Moreno-Risueño, M., Rodriguez-Medina, J., Sozzani, R., & Brady, S. M. (2023, December 6).

co-author countries: Spain 🇪🇸 Taiwan, Province of China 🇹🇼 United States of America 🇺🇸
Source: ORCID
Added: January 25, 2024

2023 article

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Beretta, V. M., Franchini, E., Din, I. U., Lacchini, E., Broeck, L., Sozzani, R., … Kater, M. M. (2023, April 21). PLANT JOURNAL, Vol. 4.

By: V. Beretta*, E. Franchini*, I. Din*, E. Lacchini*, L. Broeck n, R. Sozzani n, G. Orozco-Arroyo*, E. Caporali* ...

co-author countries: Belgium 🇧🇪 France 🇫🇷 Italy 🇮🇹 Pakistan 🇵🇰 United States of America 🇺🇸
author keywords: Oryza sativa; transcription factor; inflorescence architecture; meristem identity; transcriptome analysis; CRISPR mutants; gene regulatory network; ALOG
Sources: Web Of Science, ORCID
Added: May 9, 2023

2022 article

Establishing a reproducible approach for the controllable deposition and maintenance of plants cells with 3D bioprinting

Broeck, L. V., Schwartz, M. F., Krishnamoorthy, S., Spurney, R. J., Tahir, M. A., Melvin, C., … Sozzani, R. (2022, March 27). (Vol. 3). Vol. 3.

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: October 21, 2022

2022 journal article

Establishing a reproducible approach to study cellular functions of plant cells with 3D bioprinting

Science Advances.

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Bioprinting; Cell Survival; Plant Cells; Printing, Three-Dimensional; Tissue Engineering / methods; Tissue Scaffolds
Source: ORCID
Added: October 21, 2022

2022 article

Functional annotation of proteins for signaling network inference in non-model species

Broeck, L. V., Bhosale, D., Song, K., Lima, C. F., Ashley, M., Zhu, T., … Sozzani, R. (2022, November 11).

By: L. Broeck n, D. Bhosale n, K. Song n, C. Lima, M. Ashley n, T. Zhu, S. Zhu, B. Cotte ...

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸
Source: ORCID
Added: January 25, 2024

2022 journal article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

PLANT CELL, 34(1), 535–556.

co-author countries: United States of America 🇺🇸
MeSH headings : Capsicum / genetics; Capsicum / physiology; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks; Homeodomain Proteins / genetics; Homeodomain Proteins / metabolism; Solanum lycopersicum / genetics; Solanum lycopersicum / physiology; Plant Proteins / genetics; Plant Proteins / metabolism
Sources: ORCID, Web Of Science
Added: February 7, 2022

2021 journal article

A hybrid model connecting regulatory interactions with stem cell divisions in the root

Quantitative Plant Biology, 2.

By: L. Broeck n, R. Spurney n, A. Fisher n, M. Schwartz n, N. Clark*, T. Nguyen n, I. Madison n, M. Gobble n, T. Long n, R. Sozzani n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: April 13, 2021

2021 journal article

Analysis of the transcriptomic, metabolomic, and gene regulatory responses to Puccinia sorghi in maize

Molecular Plant Pathology, 22(4), 465–479.

By: S. Kim n, L. Van den Broeck n, S. Karre n, H. Choi*, S. Christensen*, G. Wang n, Y. Jo*, W. Cho*, P. Balint‐Kurti n

co-author countries: China 🇨🇳 Korea (Republic of) 🇰🇷 United States of America 🇺🇸
author keywords: common rust; gene regulatory network; maize; Puccinia sorghi; RNA‐ Seq
MeSH headings : Gene Expression Profiling; Host-Pathogen Interactions; Metabolome; Metabolomics; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Proteins / metabolism; Puccinia / physiology; Transcriptome; Zea mays / genetics; Zea mays / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: March 1, 2021

2021 review

Divide and Conquer: The Initiation and Proliferation of Meristems

[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 147–156.

By: M. Schwartz n, R. Peters n, A. Hunt n, A. Abdul-Matin n, L. Broeck n & R. Sozzani n

co-author countries: United States of America 🇺🇸

Contributors: L. Broeck n

author keywords: Founder cells; meristem initiation; meristem maintenance; procambium; root apical meristem; shoot apical meristem
Sources: ORCID, Web Of Science
Added: May 10, 2021

2021 article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27). (Vol. 2). Vol. 2.

By: H. Thomas*, L. Broeck n, R. Spurney n, R. Sozzani n & M. Frank*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: October 21, 2022

2021 article

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Franchini, E., Beretta, V. M., Din, I. U., Lacchini, E., Broeck, L. V., Sozzani, R., … Kater, M. M. (2021, May 3). (Vol. 5). Vol. 5.

By: E. Franchini*, V. Beretta*, I. Din*, E. Lacchini*, L. Broeck n, R. Sozzani n, G. Orozco-Arroyo*, H. Adam* ...

co-author countries: Czechia 🇨🇿 France 🇫🇷 Italy 🇮🇹 United States of America 🇺🇸
Source: ORCID
Added: October 21, 2022

2021 journal article

Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals

BioDesign Research.

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: April 8, 2022

2020 journal article

Accessing Legacy Phosphorus in Soils

Soil Systems, 4(4), 74.

By: S. Doydora n, L. Gatiboni n, K. Grieger n, D. Hesterberg n, J. Jones n, E. McLamore*, R. Peters n, R. Sozzani n, L. Van den Broeck n, O. Duckworth n

co-author countries: United States of America 🇺🇸
author keywords: legacy phosphorus; speciation; transformation; accessibility
Sources: ORCID, Crossref
Added: December 23, 2020

2020 journal article

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

By: L. Van den Broeck n, M. Gordon n, D. Inzé*, C. Williams n & R. Sozzani n

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸
author keywords: gene regulatory network; network properties; network inference; machine learning; experimental methodologies
Sources: ORCID, Web Of Science, Crossref
Added: July 13, 2020

2020 journal article

Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big

Annual Review of Plant Biology, 71(1), 789–816.

By: N. Clark n, L. Van den Broeck n, M. Guichard*, A. Stager*, H. Tanner*, I. Blilou*, G. Grossmann*, A. Iyer-Pascuzzi* ...

co-author countries: Germany 🇩🇪 Saudi Arabia 🇸🇦 United States of America 🇺🇸
author keywords: Forster resonance energy transfer; scanning fluorescent correlation spectroscopy; microfluid devices; light sheet microscopy; imaging of macroscopic traits; multiscale imaging techniques
MeSH headings : Biology; Plant Development; Plants
Sources: Web Of Science, ORCID, Crossref
Added: September 14, 2020

2020 journal article

Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division

Proceedings of the National Academy of Sciences, 117(26), 15332–15342.

By: N. Clark n, A. Fisher n, B. Berckmans*, L. Van den Broeck n, E. Nelson n, T. Nguyen n, E. Bustillo-Avendaño*, S. Zebell* ...

co-author countries: Germany 🇩🇪 Spain 🇪🇸 United States of America 🇺🇸
author keywords: protein complex stoichiometry; intercellular protein movement; mathematical modeling; expression dynamics; transcription factor
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Biomarkers; Cell Differentiation; Gene Expression Regulation, Plant / physiology; Models, Biological; Mutation; Stem Cells / physiology; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: ORCID, Crossref
Added: September 14, 2020

2020 journal article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL, 101(3), 716–730.

co-author countries: United States of America 🇺🇸
author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Sources: ORCID, Web Of Science
Added: December 9, 2019

2018 journal article

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators.

Journal of Experimental Botany, 8.

By: N. N*, V. Broeck L, Z. S*, . Cotte B, D. M*, G. K*, I. D*, D. I*

co-author countries: Belgium 🇧🇪
author keywords: AHA2; Arabidopsis thaliana; CRRSP38; leaf growth; mild osmotic stress; phosphoproteome; signalling
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Mannitol / pharmacology; Phosphoproteins / metabolism; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / metabolism; Proteome / drug effects; Proteome / metabolism
Source: ORCID
Added: October 21, 2022

2018 journal article

The Pivotal Role of Ethylene in Plant Growth.

Trends in Plant Science, 4.

By: M. Dubois*, . Broeck L Van & D. Inzé*

co-author countries: Belgium 🇧🇪 France 🇫🇷
MeSH headings : Ethylenes / metabolism; Plant Development; Plant Growth Regulators / physiology; Plant Leaves / growth & development
Source: ORCID
Added: October 21, 2022

2017 dataset

E-MTAB-6205 - The expression profiles of 31 transcription factors in wild-type Col-0 plants upon mild osmotic stress, including 10 time points and different leaf tissues

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6205

Lisa Van den Broeck

Source: ORCID
Added: October 21, 2022

2017 dataset

E-MTAB-6209 - The expression profiles of 30 transcription factors in 17 inducible gain-of-function lines after activation of overexpression, including 5 time points

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6209

Lisa Van den Broeck

Source: ORCID
Added: October 21, 2022

2017 journal article

From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress

Molecular Systems Biology, 13(12), 961.

co-author countries: Belgium 🇧🇪 Japan 🇯🇵
author keywords: growth regulation; mild osmotic stress; short-term stress response; transcription factors; transcriptional network
MeSH headings : Adaptation, Physiological / drug effects; Adaptation, Physiological / genetics; Arabidopsis / drug effects; Arabidopsis / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / drug effects; Gene Regulatory Networks / drug effects; Genes, Plant; Gibberellins / biosynthesis; Gibberellins / metabolism; Mannitol / pharmacology; Osmotic Pressure / physiology; Phenotype; Plant Leaves / drug effects; Plant Leaves / genetics; Plant Leaves / growth & development; Plants, Genetically Modified; Stochastic Processes; Stress, Physiological / drug effects; Stress, Physiological / genetics; Transcription Factors / metabolism; Transcription, Genetic / drug effects
Source: ORCID
Added: October 21, 2022

2017 journal article

Time of day determines Arabidopsis transcriptome and growth dynamics under mild drought.

Plant, Cell & Environment, 2.

Lisa Van den Broeck

author keywords: leaf growth regulation; mild drought response; time-course transcriptomics
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Circadian Clocks / genetics; Droughts; Gene Expression Profiling; Gene Expression Regulation, Plant; Plant Leaves / genetics; Plant Leaves / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Real-Time Polymerase Chain Reaction; Sequence Analysis, RNA; Stress, Physiological / genetics; Time Factors; Transcriptome / genetics
Source: ORCID
Added: October 21, 2022

2016 journal article

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.

Journal of Experimental Botany, 8.

Lisa Van den Broeck

author keywords: Arabidopsis thaliana; ERF; GATA23; lateral root initiation; RAPID ALKALINIZATION FACTOR (RALF)
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Peptide Hormones / genetics; Peptide Hormones / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: October 21, 2022

2015 journal article

The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.

Plant Physiology, 9.

Lisa Van den Broeck

MeSH headings : Amino Acids, Cyclic / pharmacology; Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Dexamethasone / pharmacology; Ethylenes / metabolism; Gene Expression Regulation, Plant / drug effects; Mannitol / adverse effects; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / physiology; Promoter Regions, Genetic / genetics; Repressor Proteins / genetics; Repressor Proteins / metabolism; Signal Transduction; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: October 21, 2022

Employment

Updated: May 6th, 2020 05:18

North Carolina State University Raleigh, North Carolina, US
Plant Microbial and Biology

2013 - 2018

VIB Gent, BE
PhD student PSB

Education

Updated: October 15th, 2019 16:01

2008 - 2013

Universiteit Gent Gent, BE
Master of Science in Biochemistry and Biotechnology

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.