Works (23)

Updated: September 10th, 2023 05:01

2023 journal article

Functional annotation of proteins for signaling network inference in non-model species

NATURE COMMUNICATIONS, 14(1).

By: L. Broeck n, D. Bhosale n, K. Song n, C. Lima*, M. Ashley n, T. Zhu*, S. Zhu*, B. Cotte* ...

Sources: Web Of Science, ORCID
Added: September 5, 2023

2023 article

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Beretta, V. M., Franchini, E., Din, I. U., Lacchini, E., Broeck, L., Sozzani, R., … Kater, M. M. (2023, April 21). PLANT JOURNAL, Vol. 4.

By: V. Beretta*, E. Franchini*, I. Din*, E. Lacchini*, L. Broeck n, R. Sozzani n, G. Orozco-Arroyo*, E. Caporali* ...

author keywords: Oryza sativa; transcription factor; inflorescence architecture; meristem identity; transcriptome analysis; CRISPR mutants; gene regulatory network; ALOG
Sources: Web Of Science, ORCID
Added: May 9, 2023

2022 article

Establishing a reproducible approach for the controllable deposition and maintenance of plants cells with 3D bioprinting

Broeck, L. V., Schwartz, M. F., Krishnamoorthy, S., Spurney, R. J., Tahir, M. A., Melvin, C., … Sozzani, R. (2022, March 27). (Vol. 3). Vol. 3.

Source: ORCID
Added: October 21, 2022

2022 journal article

Establishing a reproducible approach to study cellular functions of plant cells with 3D bioprinting

Science Advances.

MeSH headings : Arabidopsis / genetics; Bioprinting; Cell Survival; Plant Cells; Printing, Three-Dimensional; Tissue Engineering / methods; Tissue Scaffolds
Source: ORCID
Added: October 21, 2022

2022 journal article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

PLANT CELL, 34(1), 535–556.

MeSH headings : Capsicum / genetics; Capsicum / physiology; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks; Homeodomain Proteins / genetics; Homeodomain Proteins / metabolism; Solanum lycopersicum / genetics; Solanum lycopersicum / physiology; Plant Proteins / genetics; Plant Proteins / metabolism
Sources: ORCID, Web Of Science
Added: February 7, 2022

2021 journal article

A hybrid model connecting regulatory interactions with stem cell divisions in the root

Quantitative Plant Biology, 2.

By: L. Broeck n, R. Spurney n, A. Fisher n, M. Schwartz n, N. Clark*, T. Nguyen n, I. Madison n, M. Gobble n, T. Long n, R. Sozzani n

Source: ORCID
Added: April 13, 2021

2021 journal article

Analysis of the transcriptomic, metabolomic, and gene regulatory responses to Puccinia sorghi in maize

Molecular Plant Pathology, 22(4), 465–479.

By: S. Kim n, L. Van den Broeck n, S. Karre n, H. Choi*, S. Christensen*, G. Wang n, Y. Jo*, W. Cho*, P. Balint‐Kurti n

author keywords: common rust; gene regulatory network; maize; Puccinia sorghi; RNA‐ Seq
MeSH headings : Gene Expression Profiling; Host-Pathogen Interactions; Metabolome; Metabolomics; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Proteins / metabolism; Puccinia / physiology; Transcriptome; Zea mays / genetics; Zea mays / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: March 1, 2021

2021 article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27). (Vol. 2). Vol. 2.

By: H. Thomas*, L. Broeck n, R. Spurney n, R. Sozzani n & M. Frank*

Source: ORCID
Added: October 21, 2022

2021 article

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Franchini, E., Beretta, V. M., Din, I. U., Lacchini, E., Broeck, L. V., Sozzani, R., … Kater, M. M. (2021, May 3). (Vol. 5). Vol. 5.

By: E. Franchini*, V. Beretta*, I. Din*, E. Lacchini*, L. Broeck n, R. Sozzani n, G. Orozco-Arroyo*, H. Adam* ...

Source: ORCID
Added: October 21, 2022

2021 journal article

Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals

BioDesign Research.

Source: ORCID
Added: April 8, 2022

2020 journal article

Accessing Legacy Phosphorus in Soils

Soil Systems, 4(4), 74.

By: S. Doydora n, L. Gatiboni n, K. Grieger n, D. Hesterberg n, J. Jones n, E. McLamore*, R. Peters n, R. Sozzani n, L. Van den Broeck n, O. Duckworth n

author keywords: legacy phosphorus; speciation; transformation; accessibility
Sources: ORCID, Crossref
Added: December 23, 2020

2020 journal article

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

By: L. Van den Broeck n, M. Gordon n, D. Inzé*, C. Williams n & R. Sozzani n

author keywords: gene regulatory network; network properties; network inference; machine learning; experimental methodologies
Sources: ORCID, Web Of Science, Crossref
Added: July 13, 2020

2020 journal article

Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big

Annual Review of Plant Biology, 71(1), 789–816.

By: N. Clark n, L. Van den Broeck n, M. Guichard*, A. Stager*, H. Tanner*, I. Blilou*, G. Grossmann*, A. Iyer-Pascuzzi* ...

author keywords: Forster resonance energy transfer; scanning fluorescent correlation spectroscopy; microfluid devices; light sheet microscopy; imaging of macroscopic traits; multiscale imaging techniques
MeSH headings : Biology; Plant Development; Plants
Sources: Web Of Science, ORCID, Crossref
Added: September 14, 2020

2020 journal article

Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division

Proceedings of the National Academy of Sciences, 117(26), 15332–15342.

By: N. Clark n, A. Fisher n, B. Berckmans*, L. Van den Broeck n, E. Nelson n, T. Nguyen n, E. Bustillo-Avendaño*, S. Zebell* ...

author keywords: protein complex stoichiometry; intercellular protein movement; mathematical modeling; expression dynamics; transcription factor
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Biomarkers; Cell Differentiation; Gene Expression Regulation, Plant / physiology; Models, Biological; Mutation; Stem Cells / physiology; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: ORCID, Crossref
Added: September 14, 2020

2020 journal article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL, 101(3), 716–730.

author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Sources: ORCID, Web Of Science
Added: December 9, 2019

2018 journal article

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators.

Journal of Experimental Botany, 8.

By: N. N*, V. Broeck L, Z. S*, . Cotte B, D. M*, G. K*, I. D*, D. I*

author keywords: AHA2; Arabidopsis thaliana; CRRSP38; leaf growth; mild osmotic stress; phosphoproteome; signalling
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Mannitol / pharmacology; Phosphoproteins / metabolism; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / metabolism; Proteome / drug effects; Proteome / metabolism
Source: ORCID
Added: October 21, 2022

2018 journal article

The Pivotal Role of Ethylene in Plant Growth.

Trends in Plant Science, 4.

By: M. Dubois*, . Broeck L Van & D. Inzé*

MeSH headings : Ethylenes / metabolism; Plant Development; Plant Growth Regulators / physiology; Plant Leaves / growth & development
Source: ORCID
Added: October 21, 2022

2017 dataset

E-MTAB-6205 - The expression profiles of 31 transcription factors in wild-type Col-0 plants upon mild osmotic stress, including 10 time points and different leaf tissues

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6205

Source: ORCID
Added: October 21, 2022

2017 dataset

E-MTAB-6209 - The expression profiles of 30 transcription factors in 17 inducible gain-of-function lines after activation of overexpression, including 5 time points

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6209

Source: ORCID
Added: October 21, 2022

2017 journal article

From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress

Molecular Systems Biology, 13(12), 961.

author keywords: growth regulation; mild osmotic stress; short-term stress response; transcription factors; transcriptional network
MeSH headings : Adaptation, Physiological / drug effects; Adaptation, Physiological / genetics; Arabidopsis / drug effects; Arabidopsis / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / drug effects; Gene Regulatory Networks / drug effects; Genes, Plant; Gibberellins / biosynthesis; Gibberellins / metabolism; Mannitol / pharmacology; Osmotic Pressure / physiology; Phenotype; Plant Leaves / drug effects; Plant Leaves / genetics; Plant Leaves / growth & development; Plants, Genetically Modified; Stochastic Processes; Stress, Physiological / drug effects; Stress, Physiological / genetics; Transcription Factors / metabolism; Transcription, Genetic / drug effects
Source: ORCID
Added: October 21, 2022

2017 journal article

Time of day determines Arabidopsis transcriptome and growth dynamics under mild drought.

Plant, Cell & Environment, 2.

author keywords: leaf growth regulation; mild drought response; time-course transcriptomics
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Circadian Clocks / genetics; Droughts; Gene Expression Profiling; Gene Expression Regulation, Plant; Plant Leaves / genetics; Plant Leaves / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Real-Time Polymerase Chain Reaction; Sequence Analysis, RNA; Stress, Physiological / genetics; Time Factors; Transcriptome / genetics
Source: ORCID
Added: October 21, 2022

2016 journal article

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.

Journal of Experimental Botany, 8.

author keywords: Arabidopsis thaliana; ERF; GATA23; lateral root initiation; RAPID ALKALINIZATION FACTOR (RALF)
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Peptide Hormones / genetics; Peptide Hormones / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: October 21, 2022

2015 journal article

The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.

Plant Physiology, 9.

MeSH headings : Amino Acids, Cyclic / pharmacology; Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Dexamethasone / pharmacology; Ethylenes / metabolism; Gene Expression Regulation, Plant / drug effects; Mannitol / adverse effects; Plant Growth Regulators / metabolism; Plant Leaves / drug effects; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / physiology; Promoter Regions, Genetic / genetics; Repressor Proteins / genetics; Repressor Proteins / metabolism; Signal Transduction; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: October 21, 2022

Employment

Updated: May 6th, 2020 05:18

North Carolina State University Raleigh, North Carolina, US
Plant Microbial and Biology

2013 - 2018

VIB Gent, BE
PhD student PSB

Education

Updated: October 15th, 2019 16:01

2008 - 2013

Universiteit Gent Gent, BE
Master of Science in Biochemistry and Biotechnology