@article{aimone_hoyer_dye_deppong_duffy_carbone_hanley-bowdoin_2022, title={An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing}, volume={["300"]}, ISSN={["1879-0984"]}, DOI={10.1016/j.jviromet.2021.114405}, journal={JOURNAL OF VIROLOGICAL METHODS}, author={Aimone, Catherine D. and Hoyer, J. Steen and Dye, Anna E. and Deppong, David O. and Duffy, Siobain and Carbone, Ignazio and Hanley-Bowdoin, Linda}, year={2022}, month={Feb}, pages={[""]} }
 @article{peng_dallas_ascencio-ibanez_hoyer_legg_hanley-bowdoin_grieve_yin_2022, title={Early detection of plant virus infection using multispectral imaging and spatial-spectral machine learning}, volume={["12"]}, ISSN={["2045-2322"]}, DOI={10.1038/s41598-022-06372-8}, number={1}, journal={SCIENTIFIC REPORTS}, author={Peng, Yao and Dallas, Mary M. and Ascencio-Ibanez, Jose T. and Hoyer, J. Steen and Legg, James and Hanley-Bowdoin, Linda and Grieve, Bruce and Yin, Hujun}, year={2022}, month={Feb}, pages={[""]} }
 @article{aimone_de leon_dallas_ndunguru_ascencio-ibanez_hanley-bowdoin_2021, title={A New Type of Satellite Associated with Cassava Mosaic Begomoviruses}, volume={["95"]}, ISSN={["1098-5514"]}, DOI={10.1128/JVI.00432-21}, number={21}, journal={JOURNAL OF VIROLOGY}, author={Aimone, Catherine D. and De Leon, Leandro and Dallas, Mary M. and Ndunguru, Joseph and Ascencio-Ibanez, Jose T. and Hanley-Bowdoin, Linda}, year={2021}, month={Nov}, pages={[""]} }
 @article{wang_gong_wu_huang_ismayil_zhang_li_gu_ludman_fatyol_et al._2021, title={A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants}, volume={["29"]}, ISSN={["1934-6069"]}, DOI={10.1016/j.chom.2021.07.003}, number={9}, journal={CELL HOST & MICROBE}, author={Wang, Yunjing and Gong, Qian and Wu, Yuyao and Huang, Fan and Ismayil, Asigul and Zhang, Danfeng and Li, Huangai and Gu, Hanqing and Ludman, Marta and Fatyol, Karoly and et al.}, year={2021}, month={Sep}, pages={["1393-+"]} }
 @article{mickelson-young_wear_song_zynda_hanley-bowdoin_thompson_2021, title={A protocol for genome-wide analysis of DNA replication timing in intact root tips}, journal={Methods in Molecular Biology series}, author={Mickelson-Young, Leigh and Wear, Emily E. and Song, Jawon and Zynda, Gregory J. and Hanley-Bowdoin, Linda and Thompson, William F.}, year={2021} }
 @article{borges_donoghue_leblanc_wear_tanurdzic_berube_brooks_thompson_hanley-bowdoin_martienssen_2021, title={Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation}, volume={31}, ISBN={1879-0445}, url={https://doi.org/10.1016/j.cub.2020.10.098}, DOI={10.1016/j.cub.2020.10.098}, number={3}, journal={CURRENT BIOLOGY}, publisher={Elsevier BV}, author={Borges, Filipe and Donoghue, Mark T. A. and LeBlanc, Chantal and Wear, Emily E. and Tanurdzic, Milos and Berube, Benjamin and Brooks, Ashley and Thompson, William F. and Hanley-Bowdoin, Linda and Martienssen, Robert A.}, year={2021}, pages={591-+} }
 @article{aimone_lavington_hoyer_deppong_mickelson-young_jacobson_kennedy_carbone_hanley-bowdoin_duffy_2021, title={Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation}, volume={["102"]}, ISSN={["1465-2099"]}, DOI={10.1099/jgv.0.001622}, number={7}, journal={JOURNAL OF GENERAL VIROLOGY}, author={Aimone, Catherine D. and Lavington, Erik and Hoyer, J. Steen and Deppong, David O. and Mickelson-Young, Leigh and Jacobson, Alana and Kennedy, George G. and Carbone, Ignazio and Hanley-Bowdoin, Linda and Duffy, Siobain}, year={2021}, pages={[""]} }
 @article{shen_hanley-bowdoin_2021, title={SnRK1: a versatile plant protein kinase that limits geminivirus infection}, volume={47}, ISBN={1879-6265}, DOI={10.1016/j.coviro.2020.12.002}, journal={CURRENT OPINION IN VIROLOGY}, author={Shen, Wei and Hanley-Bowdoin, Linda}, year={2021}, month={Apr}, pages={18–24} }
 @article{he_wang_yin_fiallo-oliv_liu_hanley-bowdoin_wang_2020, title={A plant DNA virus replicates in the salivary glands of its insect vector via recruitment of host DNA synthesis machinery}, volume={117}, ISBN={0027-8424}, DOI={10.1073/pnas.1820132117}, number={29}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, author={He, Ya-Zhou and Wang, Yu-Meng and Yin, Tian-Yan and Fiallo-Oliv, Elvira and Liu, Yin-Quan and Hanley-Bowdoin, Linda and Wang, Xiao-Wei}, year={2020}, pages={16928–16937} }
 @article{wheeler_brooks_concia_vera_wear_leblanc_ramu_vaughn_bass_martienssen_et al._2020, title={Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN])}, volume={183}, ISBN={1532-2548}, DOI={10.1104/pp.19.01520}, number={1}, journal={PLANT PHYSIOLOGY}, author={Wheeler, Emily and Brooks, Ashley M. and Concia, Lorenzo and Vera, Daniel L. and Wear, Emily E. and LeBlanc, Chantal and Ramu, Umamaheswari and Vaughn, Matthew W. and Bass, Hank W. and Martienssen, Robert A. and et al.}, year={2020}, month={May}, pages={206–220} }
 @article{wear_song_zynda_mickelson-young_leblanc_lee_deppong_allen_martienssen_vaughn_et al._2020, title={Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots}, volume={16}, ISBN={1553-7404}, DOI={10.1371/journal.pgen.1008623}, number={10}, journal={PLOS GENETICS}, author={Wear, Emily E. and Song, Jawon and Zynda, Gregory J. and Mickelson-Young, Leigh and LeBlanc, Chantal and Lee, Tae-Jin and Deppong, David O. and Allen, George C. and Martienssen, Robert A. and Vaughn, Matthew W. and et al.}, year={2020}, month={Oct} }
 @article{ismayil_yang_haxim_wang_li_han_wang_zheng_wei_nagalakshmi_et al._2020, title={Cotton leaf curl Multan virus beta C1 Protein Induces Autophagy by Disrupting the Interaction of Autophagy-Related Protein 3 with Glyceraldehyde-3-Phosphate Dehydrogenases([OPEN])}, volume={32}, ISBN={1532-298X}, DOI={10.1105/tpc.19.00759}, number={4}, journal={PLANT CELL}, author={Ismayil, Asigul and Yang, Meng and Haxim, Yakupjan and Wang, Yunjing and Li, Jinlin and Han, Lu and Wang, Yan and Zheng, Xiyin and Wei, Xiang and Nagalakshmi, Ugrappa and et al.}, year={2020}, month={Apr}, pages={1124–1135} }
 @article{hoyer_fondong_dallas_aimone_deppong_duffy_hanley-bowdoin_2020, title={Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon}, volume={9}, ISBN={2576-098X}, DOI={10.1128/MRA.00802-20}, number={46}, journal={MICROBIOLOGY RESOURCE ANNOUNCEMENTS}, author={Hoyer, J. Steen and Fondong, Vincent N. and Dallas, Mary M. and Aimone, Catherine Doyle and Deppong, David O. and Duffy, Siobain and Hanley-Bowdoin, Linda}, year={2020}, month={Nov} }
 @article{wang_wu_gong_ismayil_yuan_lian_jia_han_deng_hong_et al._2019, title={Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4}, volume={93}, ISBN={1098-5514}, DOI={10.1128/JVI.01675-18}, number={6}, journal={JOURNAL OF VIROLOGY}, author={Wang, Yunjing and Wu, Yuyao and Gong, Qian and Ismayil, Asigul and Yuan, Yuxiang and Lian, Bi and Jia, Qi and Han, Meng and Deng, Haiteng and Hong, Yiguo and et al.}, year={2019}, month={Mar} }
 @inbook{mbewe_hanley-bowdoin_ndunguru_duffy_2018, place={St. Paul, MN}, title={Cassava viruses – host jumps, virus recombination, spread in plant material}, booktitle={Emerging Plant Diseases and Global Food Security}, publisher={APS Press}, author={Mbewe, W. and Hanley-Bowdoin, L. and Ndunguru, J. and Duffy, S.}, editor={Records, A. and Ristaino, J.Editors}, year={2018} }
 @article{turpin_vera_savadel_lung_wear_mickelson-young_thompson_hanley-bowdoin_dennis_zhang_et al._2018, title={Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)}, volume={20}, DOI={10.1016/j.dib.2018.08.015}, journal={DATA IN BRIEF}, author={Turpin, Zachary M. and Vera, Daniel L. and Savadel, Savannah D. and Lung, Pei-Yau and Wear, Emily E. and Mickelson-Young, Leigh and Thompson, William and Hanley-Bowdoin, Linda and Dennis, Jonathan H. and Zhang, Jinfeng and et al.}, year={2018}, pages={358–363} }
 @article{ismayil_haxim_wang_li_qian_han_chen_jia_yihao liu_zhu_et al._2018, title={Cotton Leaf Curl Multan virus C4 protein suppresses both transcriptional and post-transcriptional gene silencing by interacting with SAM synthetase}, volume={14}, ISSN={1553-7374}, url={http://dx.doi.org/10.1371/journal.ppat.1007282}, DOI={10.1371/journal.ppat.1007282}, number={8}, journal={PLOS Pathogens}, publisher={Public Library of Science (PLoS)}, author={Ismayil, Asigul and Haxim, Yakupjan and Wang, Yunjing and Li, Huangai and Qian, Lichao and Han, Ting and Chen, Tianyuan and Jia, Qi and Yihao Liu, Alexander and Zhu, Songbiao and et al.}, editor={Dinesh-Kumar, Savithramma P.Editor}, year={2018}, month={Aug}, pages={e1007282} }
 @article{caldo_shen_xu_hanley-bowdoin_chen_weselake_lemieux_2018, title={Diacylglycerol acyltransferase 1 is activated by phosphatidate and inhibited by SnRK1-catalyzed phosphorylation}, volume={96}, DOI={10.1111/tpj.14029}, number={2}, journal={PLANT JOURNAL}, author={Caldo, Kristian Mark P. and Shen, Wei and Xu, Yang and Hanley-Bowdoin, Linda and Chen, Guanqun and Weselake, Randall J. and Lemieux, M. Joanne}, year={2018}, pages={287–299} }
 @article{concia_brooks_wheeler_zynda_wear_leblanc_song_lee_pascuzzi_martienssen_et al._2018, title={Genome-wide analysis of the arabidopsis replication timing program}, volume={176}, url={http://europepmc.org/abstract/med/29301956}, DOI={10.1104/pp.17.01537}, number={3}, journal={Plant Physiology}, author={Concia, L. and Brooks, A. M. and Wheeler, E. and Zynda, G. J. and Wear, E. E. and LeBlanc, C. and Song, J. and Lee, T. J. and Pascuzzi, P. E. and Martienssen, R. A. and et al.}, year={2018}, pages={2166–2185} }
 @article{rajabu_kennedy_ndunguru_ateka_tairo_hanley-bowdoin_ascencio-ibanez_2018, title={Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses}, volume={256}, DOI={10.1016/j.jviromet.2018.03.002}, journal={Journal of Virological Methods}, author={Rajabu, C. A. and Kennedy, G. G. and Ndunguru, J. and Ateka, E. M. and Tairo, F. and Hanley-Bowdoin, Linda and Ascencio-Ibanez, J. T.}, year={2018}, pages={89–99} }
 @article{shen_bobay_greeley_reyes_rajabu_blackburn_dallas_goshe_ascencio-ibanez_hanley-bowdoin_2018, title={Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection}, volume={178}, DOI={10.1104/pp.18.00268}, number={1}, journal={PLANT PHYSIOLOGY}, author={Shen, Wei and Bobay, Benjamin G. and Greeley, Laura A. and Reyes, Maria I. and Rajabu, Cyprian A. and Blackburn, R. Kevin and Dallas, Mary Beth and Goshe, Michael B. and Ascencio-Ibanez, Jose T. and Hanley-Bowdoin, Linda}, year={2018}, pages={372–389} }
 @article{reyes_flores-vergara_guerra-peraza_rajabu_desai_hiromoto-ruiz_ndunguru_hanley-bowdoin_kjemtrup_ascencio-ibanez_et al._2017, title={A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae}, volume={92}, DOI={10.1111/tpj.13716}, number={5}, journal={Plant Journal}, author={Reyes, M. I. and Flores-Vergara, M. A. and Guerra-Peraza, O. and Rajabu, C. and Desai, J. and Hiromoto-Ruiz, Y. H. and Ndunguru, J. and Hanley-Bowdoin, Linda and Kjemtrup, S. and Ascencio-Ibanez, J. T. and et al.}, year={2017}, pages={796–807} }
 @article{michelmore_coaker_bart_beattie_bent_bruce_cameron_dangl_dinesh-kumar_edwards_et al._2017, title={Foundational and Translational Research Opportunities to Improve Plant Health}, volume={30}, ISSN={0894-0282}, url={http://dx.doi.org/10.1094/mpmi-01-17-0010-cr}, DOI={10.1094/mpmi-01-17-0010-cr}, number={7}, journal={Molecular Plant-Microbe Interactions}, publisher={Scientific Societies}, author={Michelmore, Richard and Coaker, Gitta and Bart, Rebecca and Beattie, Gwyn and Bent, Andrew and Bruce, Toby and Cameron, Duncan and Dangl, Jeffery and Dinesh-Kumar, Savithramma and Edwards, Rob and et al.}, year={2017}, month={Jul}, pages={515–516} }
 @article{wear_song_zynda_leblanc_lee_mickelson-young_concia_mulvaney_szymanski_allen_et al._2017, title={Genomic analysis of the DNA replication timing program during mitotic S phase in maize (Zea mays) root tips}, volume={29}, url={http://europepmc.org/abstract/med/28842533}, DOI={10.1105/tpc.17.00037}, number={9}, journal={Plant Cell}, author={Wear, E. E. and Song, J. W. and Zynda, G. J. and LeBlanc, C. and Lee, T. J. and Mickelson-Young, L. and Concia, L. and Mulvaney, P. and Szymanski, E. S. and Allen, G. C. and et al.}, year={2017}, pages={2126–2149} }
 @article{zynda_song_concia_wear_hanley-bowdoin_thompson_vaughn_2017, title={Repliscan: A tool for classifying replication timing regions}, volume={18}, url={http://europepmc.org/abstract/med/28784090}, DOI={10.1186/s12859-017-1774-x}, journal={BMC Bioinformatics}, author={Zynda, G. J. and Song, J. W. and Concia, L. and Wear, E. E. and Hanley-Bowdoin, Linda and Thompson, William and Vaughn, M. W.}, year={2017}, pages={1–14} }
 @article{mickelson-young_wear_mulvaney_lee_szymanski_allen_hanley-bowdoin_thompson_2016, title={A flow cytometric method for estimating S-phase duration in plants}, volume={67}, url={http://europepmc.org/abstract/med/27697785}, DOI={10.1093/jxb/erw367}, number={21}, journal={Journal of Experimental Botany}, author={Mickelson-Young, L. and Wear, E. and Mulvaney, P. and Lee, T. J. and Szymanski, E. S. and Allen, G. and Hanley-Bowdoin, Linda and Thompson, William}, year={2016}, pages={6077–6087} }
 @inbook{wear_concia_brooks_markham_lee_allen_thompson_hanley-bowdoin_2016, title={Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry}, ISBN={9781493931415 9781493931422}, ISSN={1064-3745 1940-6029}, url={http://dx.doi.org/10.1007/978-1-4939-3142-2_6}, DOI={10.1007/978-1-4939-3142-2_6}, booktitle={Methods in Molecular Biology}, publisher={Springer New York}, author={Wear, Emily E. and Concia, Lorenzo and Brooks, Ashley M. and Markham, Emily A. and Lee, Tae-Jin and Allen, George C. and Thompson, William F. and Hanley-Bowdoin, Linda}, year={2016}, pages={69–86} }
 @article{ndunguru_leon_doyle_sseruwagi_plata_legg_thompson_tohme_aveling_ascencio-ibanez_et al._2016, title={Two novel DNAs that enhance symptoms and overcome CMD2 resistance to cassava mosaic disease}, volume={90}, DOI={10.1128/jvi.02834-15}, number={8}, journal={Journal of Virology}, author={Ndunguru, J. and Leon, L. De and Doyle, C. D. and Sseruwagi, P. and Plata, G. and Legg, J. P. and Thompson, G. and Tohme, J. and Aveling, T. and Ascencio-Ibanez, J. T. and et al.}, year={2016}, pages={4160–4173} }
 @article{bass_hoffman_lee_wear_joseph_allen_hanley-bowdoin_thompson_2015, title={Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei}, volume={89}, DOI={10.1007/s11103-015-0364-4}, number={4-5}, journal={Plant Molecular Biology}, author={Bass, H. W. and Hoffman, G. G. and Lee, T. J. and Wear, E. E. and Joseph, S. R. and Allen, G. C. and Hanley-Bowdoin, Linda and Thompson, William}, year={2015}, pages={339–351} }
 @article{bass_wear_lee_hoffman_gumber_allen_thompson_hanley-bowdoin_2014, title={A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development}, volume={65}, DOI={10.1093/jxb/ert470}, number={10}, journal={Journal of Experimental Botany}, author={Bass, H. W. and Wear, E. E. and Lee, T. J. and Hoffman, G. G. and Gumber, H. K. and Allen, G. C. and Thompson, William and Hanley-Bowdoin, Linda}, year={2014}, pages={2747–2756} }
 @article{pascuzzi_flores-vergara_lee_sosinski_vaughn_hanley-bowdoin_thompson_allen_2014, title={In vivo mapping of Arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly(dA:dT) tracts}, volume={26}, DOI={10.1105/tpc.113.121194}, number={1}, journal={Plant Cell}, author={Pascuzzi, P. E. and Flores-Vergara, M. A. and Lee, T. J. and Sosinski, B. and Vaughn, M. W. and Hanley-Bowdoin, Linda and Thompson, William and Allen, G. C.}, year={2014}, pages={102–120} }
 @article{shen_dallas_goshe_hanley-bowdoin_2014, title={SnRK1 phosphorylation of AL2 delays cabbage leaf curl virus infection in arabidopsis}, volume={88}, DOI={10.1128/jvi.00761-14}, number={18}, journal={Journal of Virology}, author={Shen, W. and Dallas, M. B. and Goshe, M. B. and Hanley-Bowdoin, Linda}, year={2014}, pages={10598–10612} }
 @article{hanley-bowdoin_bejarano_robertson_mansoor_2013, title={Geminiviruses: Masters at redirecting and reprogramming plant processes}, volume={11}, DOI={10.1038/nrmicro3117}, number={11}, journal={Nature Reviews. Microbiology}, author={Hanley-Bowdoin, Linda and Bejarano, E. R. and Robertson, D. and Mansoor, S.}, year={2013}, pages={777–788} }
 @article{reyes_nash_dallas_ascencio-ibanez_hanley-bowdoin_2013, title={Peptide aptamers that bind to geminivirus replication proteins confer a resistance phenotype to tomato yellow leaf curl virus and tomato mottle virus infection in tomato}, volume={87}, DOI={10.1128/jvi.01095-13}, number={17}, journal={Journal of Virology}, author={Reyes, M. I. and Nash, T. E. and Dallas, M. M. and Ascencio-Ibanez, J. T. and Hanley-Bowdoin, Linda}, year={2013}, pages={9691–9706} }
 @article{nash_dallas_reyes_buhrman_ascencio-ibanez_hanley-bowdoin_2011, title={Functional analysis of a novel motif conserved across geminivirus rep proteins}, volume={85}, DOI={10.1128/jvi.02143-10}, number={3}, journal={Journal of Virology}, author={Nash, T. E. and Dallas, M. B. and Reyes, M. I. and Buhrman, G. K. and Ascencio-Ibanez, J. T. and Hanley-Bowdoin, Linda}, year={2011}, pages={1182–1192} }
 @article{sanchez-duran_dallas_ascencio-ibanez_reyes_arroyo-mateos_ruiz-albert_hanley-bowdoin_bejarano_2011, title={Interaction between Geminivirus replication protein and the SUMO-conjugating enzyme is required for viral infection}, volume={85}, DOI={10.1128/jvi.02566-10}, number={19}, journal={Journal of Virology}, author={Sanchez-Duran, M. A. and Dallas, M. B. and Ascencio-Ibanez, J. T. and Reyes, M. I. and Arroyo-Mateos, M. and Ruiz-Albert, J. and Hanley-Bowdoin, Linda and Bejarano, E. R.}, year={2011}, pages={9789–9800} }
 @article{shen_liu_song_xie_hanley-bowdoin_zhou_2011, title={Tomato SlSnRK1 protein interacts with and phosphorylates beta C1, a pathogenesis protein encoded by a geminivirus beta-satellite}, volume={157}, DOI={10.1104/pp.111.184648}, number={3}, journal={Plant Physiology}, author={Shen, Q. T. and Liu, Z. and Song, F. M. and Xie, Q. and Hanley-Bowdoin, Linda and Zhou, X. P.}, year={2011}, pages={1394–1406} }
 @article{lee_pascuzzi_settlage_shultz_tanurdzic_rabinowicz_menges_zheng_main_murray_et al._2010, title={Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State}, volume={6}, ISSN={1553-7404}, url={http://dx.doi.org/10.1371/journal.pgen.1000982}, DOI={10.1371/journal.pgen.1000982}, number={6}, journal={PLoS Genetics}, publisher={Public Library of Science (PLoS)}, author={Lee, Tae-Jin and Pascuzzi, Pete E. and Settlage, Sharon B. and Shultz, Randall W. and Tanurdzic, Milos and Rabinowicz, Pablo D. and Menges, Margit and Zheng, Ping and Main, Dorrie and Murray, James A. H. and et al.}, editor={Copenhaver, Gregory P.Editor}, year={2010}, month={Jun}, pages={e1000982} }
 @article{sozzani_maggio_giordo_umana_ascencio-ibañez_hanley-bowdoin_bergounioux_cella_albani_2010, title={The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis}, volume={72}, ISSN={1573-5028}, DOI={10.1007/s11103-009-9577-8}, abstractNote={An emerging view of plant cell cycle regulators, including the E2F transcription factors, implicates them in the integration of cell proliferation and development. Arabidopsis encodes six E2F proteins that can act as activators or repressors of E2F-responsive genes. E2FA, E2FB and E2FC interact with the retinoblastoma-like RBR protein and bind to DNA together with their DP partners. In contrast, E2FD, E2FE and E2FF (also known as DEL2, DEL1 and DEL3) are atypical E2Fs that possess duplicated DNA binding regions, lack trans-activating and RBR-binding domains and are believed to act as transcriptional inhibitors/repressors. E2FE/DEL1 has been shown to inhibit the endocycle and E2FF/DEL3 appears to control cell expansion but the role of E2FD/DEL2 has not been reported so far. In this study, we investigated the expression of E2FD/DEL2 and analysed the accumulation of its product. These studies revealed that E2FD/DEL2 accumulation is subject to negative post-translational regulation mediated by the plant hormone auxin. Moreover, the analysis of mutant and transgenic plants characterized by altered expression of E2FD/DEL2 has revealed that this atypical E2F can affect plant growth by promoting cell proliferation and repressing cell elongation. Overexpression of E2FD/DEL2 increased the expression of E2FA, E2FB and E2FE/DEL1 whereas its inactivation led to the up-regulation of genes encoding repressors of cell division. These results suggest that E2FD/DEL2 is part of a regulatory network that controls the balance between cell proliferation and development in Arabidopsis.}, number={4-5}, journal={Plant Molecular Biology}, author={Sozzani, Rosangela and Maggio, Caterina and Giordo, Roberta and Umana, Elisabetta and Ascencio-Ibañez, Jose Trinidad and Hanley-Bowdoin, Linda and Bergounioux, Catherine and Cella, Rino and Albani, Diego}, year={2010}, month={Mar}, pages={381–395} }
 @article{shen_reyes_hanley-bowdoin_2009, title={Arabidopsis protein kinases GRIK1 and GRIK2 specifically activate SnRK1 by phosphorylating its activation loop}, volume={150}, DOI={10.1104/pp.108.132787}, number={2}, journal={Plant Physiology}, author={Shen, W. and Reyes, M. I. and Hanley-Bowdoin, Linda}, year={2009}, pages={996–1005} }
 @article{shultz_lee_allen_thompson_hanley-bowdoin_2009, title={Dynamic localization of the DNA replication proteins MCM5 and MCM7 in plants}, volume={150}, DOI={10.1104/pp.109.136614}, number={2}, journal={Plant Physiology}, author={Shultz, R. W. and Lee, T. J. and Allen, G. C. and Thompson, William and Hanley-Bowdoin, Linda}, year={2009}, pages={658–669} }
 @inbook{lopez-ochoa_nash_ramirez-prado_hanley-bowdoin_2009, title={Isolation of Peptide Aptamers to Target Protein Function}, ISBN={9781934115893 9781597455572}, ISSN={1064-3745 1940-6029}, url={http://dx.doi.org/10.1007/978-1-59745-557-2_19}, DOI={10.1007/978-1-59745-557-2_19}, booktitle={Methods in Molecular Biology}, publisher={Humana Press}, author={Lopez-Ochoa, Luisa and Nash, Tara E. and Ramirez-Prado, Jorge and Hanley-Bowdoin, Linda}, year={2009}, pages={333–360} }
 @misc{ascencio-ibanez_sozzani_lee_chu_wolfinger_cella_hanley-bowdoin_2008, title={Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection}, volume={148}, number={1}, journal={Plant Physiology}, author={Ascencio-Ibanez, J. T. and Sozzani, R. and Lee, T. J. and Chu, T. M. and Wolfinger, R. D. and Cella, R. and Hanley-Bowdoin, L.}, year={2008}, pages={436–454} }
 @article{jordan_shen_hanley-bowdoin_robertson_2007, title={Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development}, volume={65}, DOI={10.1007/s11103-007-9206-3}, number={1-2}, journal={Plant Molecular Biology}, author={Jordan, C. V. and Shen, W. and Hanley-Bowdoin, Linda and Robertson, D.}, year={2007}, pages={163–175} }
 @misc{shultz_tatineni_hanley-bowdoin_thompson_2007, title={Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])}, volume={144}, number={4}, journal={Plant Physiology}, author={Shultz, R. W. and Tatineni, V. M. and Hanley-Bowdoin, L. and Thompson, W. F.}, year={2007}, pages={1697–1714} }
 @article{arguello-astorga_ascencio-ibanez_dallas_orozco_hanley-bowdoin_2007, title={High-frequency reversion of geminivirus replication protein mutants during infection}, volume={81}, DOI={10.1128/JVI.00925-07}, number={20}, journal={Journal of Virology}, author={Arguello-Astorga, G. and Ascencio-Ibanez, J. T. and Dallas, M. B. and Orozco, B. M. and Hanley-Bowdoin, Linda}, year={2007}, pages={11005–11015} }
 @article{shen_hanley-bowdoin_2006, title={Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1-and mammalian AMPK-activating kinases}, volume={142}, DOI={10.1104/pp.106.088476}, number={4}, journal={Plant Physiology}, author={Shen, W. and Hanley-Bowdoin, Linda}, year={2006}, pages={1642–1655} }
 @article{lopez-ochoa_ramirez-prado_hanley-bowdoin_2006, title={Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells}, volume={80}, DOI={10.1128/JVI.02698-05}, number={12}, journal={Journal of Virology}, author={Lopez-Ochoa, L. and Ramirez-Prado, J. and Hanley-Bowdoin, Linda}, year={2006}, pages={5841–5853} }
 @article{shultz_settlage_hanley-bowdoin_thompson_2005, title={A  trichloroacetic acid-acetone method greatly reduces infrared autofluorescence of protein extracts from plant tissue}, volume={23}, DOI={10.1007/BF02788888}, number={4}, journal={Plant Molecular Biology Reporter}, author={Shultz, R. W. and Settlage, S. B. and Hanley-Bowdoin, Linda and Thompson, William}, year={2005}, pages={405–409} }
 @article{settlage_see_hanley-bowdoin_2005, title={Geminivirus C3 protein: Replication enhancement and protein interactions}, volume={79}, DOI={10.1128/jvi.79.15.9885-9895.2005}, number={15}, journal={Journal of Virology}, author={Settlage, S. B. and See, R. G. and Hanley-Bowdoin, Linda}, year={2005}, pages={9885–9895} }
 @article{arguello-astorga_lopez-ochoa_kong_orozco_settlage_hanley-bowdoin_2004, title={A  novel motif in geminivirus replication proteins interacts with the plant retinoblastoma-related protein}, volume={78}, DOI={10.1128/JVI.78.9.4817-4826.2004}, number={9}, journal={Journal of Virology}, author={Arguello-Astorga, G. and Lopez-Ochoa, L. and Kong, L. J. and Orozco, B. M. and Settlage, S. B. and Hanley-Bowdoin, Linda}, year={2004}, pages={4817–4826} }
 @article{lee_shultz_hanley-bowdoin_thompson_2004, title={Establishment of rapidly proliferating rice cell suspension culture and its characterization by fluorescence-activated cell sorting analysis}, volume={22}, DOI={10.1007/BF02773136}, number={3}, journal={Plant Molecular Biology Reporter}, author={Lee, T. J. and Shultz, R. W. and Hanley-Bowdoin, Linda and Thompson, William}, year={2004}, pages={259–267} }
 @misc{hanley-bowdoin_orozco_kong_gruissem_2004, title={Geminivirus resistant transgenic plants}, volume={6,800,793}, number={2004 Oct. 5}, publisher={Washington, DC: U.S. Patent and Trademark Office}, author={Hanley-Bowdoin, L. and Orozco, B. M. and Kong, L. J. and Gruissem, W.}, year={2004} }
 @misc{hanley-bowdoin_settlage_2004, title={Geminivirus resistant transgenic plants expressing a mutant geminivirus AL3/C3 coding sequence}, volume={6,747,188}, number={2004 June 8}, publisher={Washington, DC: U.S. Patent and Trademark Office}, author={Hanley-Bowdoin, L. and Settlage, S.}, year={2004} }
 @article{castillo_kong_hanley-bowdoin_bejarano_2004, title={Interaction between a geminivirus replication protein and the plant sumoylation system}, volume={78}, DOI={10.1128/JVI.78.6.2758-2769.2004}, number={6}, journal={Journal of Virology}, author={Castillo, A. G. and Kong, L. J. and Hanley-Bowdoin, Linda and Bejarano, E. R.}, year={2004}, pages={2758–2769} }
 @article{hanley-bowdoin_settlage_robertson_2004, title={Reprogramming plant gene expression: A prerequisite to geminivirus DNA replication}, volume={5}, DOI={10.1111/J.1364-3703.2004.00214.X}, number={2}, journal={Molecular Plant Pathology}, author={Hanley-Bowdoin, Linda and Settlage, S. B. and Robertson, D.}, year={2004}, pages={149–156} }
 @article{kong_hanley-bowdoin_2002, title={A geminivirus replication protein interacts with a protein kinase and a motor protein that display different expression patterns during plant development and infection}, volume={14}, ISBN={1040-4651}, DOI={10.1105/tpc.003681}, number={8}, journal={Plant Cell}, author={Kong, L. J. and Hanley-Bowdoin, Linda}, year={2002}, pages={1817–1832} }
 @article{nagar_hanley-bowdoin_robertson_2002, title={Host DNA replication is induced by geminivirus infection of differentiated plant cells}, volume={14}, DOI={10.1105/tpc.005777}, number={12}, journal={Plant Cell}, author={Nagar, S. and Hanley-Bowdoin, Linda and Robertson, D.}, year={2002}, pages={2995–3007} }
 @article{egelkrout_mariconti_settlage_cella_robertson_hanley-bowdoin_2002, title={Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development}, volume={14}, DOI={10.1105/tpc.006403}, number={12}, journal={Plant Cell}, author={Egelkrout, E. M. and Mariconti, L. and Settlage, S. B. and Cella, R. and Robertson, D. and Hanley-Bowdoin, Linda}, year={2002}, pages={3225–3236} }
 @article{settlage_miller_gruissem_hanley-bowdoin_2001, title={Dual interaction of a geminivirus replication accessory factor with a viral replication protein and a plant cell cycle regulator}, volume={279}, DOI={10.1006/viro.2000.0719}, number={2}, journal={Virology}, author={Settlage, S. B. and Miller, A. B. and Gruissem, W. and Hanley-Bowdoin, Linda}, year={2001}, pages={570–576} }
 @article{egelkrout_robertson_hanley-bowdoin_2001, title={Proliferating cell nuclear antigen transcription is repressed through an E2F consensus element and activated by geminivirus infection in mature leaves}, volume={13}, DOI={10.1105/tpc.13.6.1437}, number={6}, journal={Plant Cell}, author={Egelkrout, E. M. and Robertson, D. and Hanley-Bowdoin, Linda}, year={2001}, pages={1437–1452} }
 @article{peele_jordan_muangsan_turnage_egelkrout_eagle_hanley-bowdoin_robertson_2001, title={Silencing of a meristematic gene using geminivirus-derived vectors}, volume={27}, DOI={10.1046/j.1365-313x.2001.01080.x}, number={4}, journal={Plant Journal}, author={Peele, C. and Jordan, C. V. and Muangsan, N. and Turnage, M. and Egelkrout, E. and Eagle, P. and Hanley-Bowdoin, Linda and Robertson, D.}, year={2001}, pages={357–366} }
 @article{kong_orozco_roe_nagar_ou_feiler_durfee_miller_gruissem_robertson_et al._2000, title={A geminivirus replication protein interacts with the retinoblastoma protein through a novel domain to determine symptoms and tissue specificity of infection in plants}, volume={19}, DOI={10.1093/emboj/19.13.3485}, number={13}, journal={EMBO Journal}, author={Kong, L. J. and Orozco, B. M. and Roe, J. L. and Nagar, S. and Ou, S. and Feiler, H. S. and Durfee, T. and Miller, A. B. and Gruissem, W. and Robertson, D. and et al.}, year={2000}, pages={3485–3495} }
 @article{bass_nagar_hanley-bowdoin_robertson_2000, title={Chromosome condensation induced by geminivirus infection of mature plant cells}, volume={113}, number={7}, journal={Journal of Cell Science}, author={Bass, H. W. and Nagar, S. and Hanley-Bowdoin, L. and Robertson, D.}, year={2000}, pages={1149–1160} }
 @article{hanley-bowdoin_settlage_orozco_nagar_robertson_2000, title={Geminiviruses - Models for plant DNA replication, transcription and cell cycle regulation ([correction to] vol 35, pg 105, 2000)}, volume={35}, number={4}, journal={Critical Reviews in Biochemistry and Molecular Biology}, author={Hanley-Bowdoin, L. and Settlage, S. B. and Orozco, B. M. and Nagar, S. and Robertson, D.}, year={2000}, pages={U4} }
 @article{hanley-bowdoin_settlage_orozco_nagar_robertson_2000, title={Geminiviruses: Models for plant DNA replication, transcription, and cell cycle regulation}, volume={35}, number={2}, journal={Critical Reviews in Biochemistry and Molecular Biology}, author={Hanley-Bowdoin, L. and Settlage, S. B. and Orozco, B. M. and Nagar, S. and Robertson, D.}, year={2000}, pages={105–140} }
 @article{orozco_kong_batts_elledge_hanley-bowdoin_2000, title={The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties}, volume={275}, DOI={10.1074/jbc.275.9.6114}, number={9}, journal={Journal of Biological Chemistry}, author={Orozco, B. M. and Kong, L. J. and Batts, L. A. and Elledge, S. and Hanley-Bowdoin, Linda}, year={2000}, pages={6114–6122} }
 @article{hanley-bowdoin_settlage_orozco_nagar_robertson_1999, title={Geminiviruses: Models for plant DNA replication, transcription, and cell cycle regulation {review}}, volume={18}, DOI={10.1080/07352689991309162}, number={1}, journal={Critical Reviews in Plant Sciences}, author={Hanley-Bowdoin, L. and Settlage, S. B. and Orozco, B. M. and Nagar, S. and Robertson, D.}, year={1999}, pages={71–106} }
 @article{orozco_hanley-bowdoin_1998, title={Conserved sequence and structural motifs contribute to the DNA binding and cleavage activities of a geminivirus replication protein}, volume={273}, DOI={10.1074/jbc.273.38.24448}, number={38}, journal={Journal of Biological Chemistry}, author={Orozco, B. M. and Hanley-Bowdoin, Linda}, year={1998}, pages={24448–24456} }
 @article{orozco_gladfelter_settlage_eagle_gentry_hanley-bowdoin_1998, title={Multiple cis elements contribute to geminivirus origin function}, volume={242}, DOI={10.1006/viro.1997.9013}, number={2}, journal={Virology}, author={Orozco, B. M and Gladfelter, H. J. and Settlage, S. B. and Eagle, P. A. and Gentry, R. N. and Hanley-Bowdoin, Linda}, year={1998}, pages={346–356} }
 @article{eagle_hanley-bowdoin_1997, title={CIS elements that contribute to geminivirus transcriptional regulation and the efficiency of DNA replication}, volume={71}, number={9}, journal={Journal of Virology}, author={Eagle, P. A. and Hanley-Bowdoin, L. K.}, year={1997}, pages={6947–6955} }
 @article{orozco_miller_settlage_hanley-bowdoin_1997, title={Functional domains of a geminivirus replication protein}, volume={272}, DOI={10.1074/jbc.272.15.9840}, number={15}, journal={Journal of Biological Chemistry}, author={Orozco, B. M. and Miller, A. B. and Settlage, S. B. and Hanley-Bowdoin, Linda}, year={1997}, pages={9840–9846} }
 @article{ach_durfee_miller_taranto_hanley-bowdoin_zambryski_gruissem_1997, title={RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein}, volume={17}, DOI={10.1128/MCB.17.9.5077}, number={9}, journal={Molecular and Cellular Biology}, author={Ach, R. A. and Durfee, T. and Miller, A. B. and Taranto, P. and Hanley-Bowdoin, Linda and Zambryski, P. C. and Gruissem, W.}, year={1997}, pages={5077–5086} }
 @article{gladfelter_eagle_fontes_batts_hanley-bowdoin_1997, title={Two domains of the AL1 protein mediate geminivirus origin recognition}, volume={239}, DOI={10.1006/viro.1997.8869}, number={1}, journal={Virology}, author={Gladfelter, H. J. and Eagle, P. A. and Fontes, E. P. B. and Batts, L. and Hanley-Bowdoin, Linda}, year={1997}, pages={186–197} }
 @article{orozco_hanley-bowdoin_1996, title={A DNA structure is required for geminivirus replication origin function.}, volume={70}, ISSN={0022-538X}, url={http://dx.doi.org/10.1128/jvi.70.1.148-158.1996}, DOI={10.1128/jvi.70.1.148-158.1996}, number={1}, journal={Journal of virology}, publisher={American Society for Microbiology}, author={Orozco, B M and Hanley-Bowdoin, L}, year={1996}, pages={148–158} }
 @inbook{hanley-bowdoin_eagle_orozco_robertson_settlage_1996, place={St. Paul, MN}, title={Geminivirus Replication}, booktitle={Biology of Plant-Microbe Interactions}, publisher={International Society of Molecular Plant-Microbe Interactions}, author={Hanley-Bowdoin, L. and Eagle, P.A. and Orozco, B.M. and Robertson, D. and Settlage, S.B.}, editor={Stacey, G. and Mullin, B. and Gresshoff, P.M.Editors}, year={1996}, pages={287–292} }
 @article{settlage_miller_hanley-bowdoin_1996, title={Interactions between geminivirus replication proteins.}, volume={70}, ISSN={0022-538X}, url={http://dx.doi.org/10.1128/jvi.70.10.6790-6795.1996}, DOI={10.1128/jvi.70.10.6790-6795.1996}, number={10}, journal={Journal of virology}, publisher={American Society for Microbiology}, author={Settlage, S B and Miller, A B and Hanley-Bowdoin, L}, year={1996}, pages={6790–6795} }
 @article{nagar_pedersen_carrick_hanley-bowdoin_robertson_1995, title={A geminivirus induces expression of a host DNA synthesis protein in terminally differentiated plant cells.}, volume={7}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.7.6.705}, DOI={10.1105/tpc.7.6.705}, number={6}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Nagar, S and Pedersen, T J and Carrick, K M and Hanley-Bowdoin, L and Robertson, D}, year={1995}, month={Jun}, pages={705–719} }
 @article{eagle_orozco_hanley-bowdoin_1994, title={A DNA sequence required for geminivirus replication also mediates transcriptional regulation.}, volume={6}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.6.8.1157}, DOI={10.1105/tpc.6.8.1157}, number={8}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Eagle, P A and Orozco, B M and Hanley-Bowdoin, L}, year={1994}, month={Aug}, pages={1157–1170} }
 @article{fontes_gladfelter_schaffer_petty_hanley-bowdoin_1994, title={Geminivirus replication origins have a modular organization.}, volume={6}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.6.3.405}, DOI={10.1105/tpc.6.3.405}, number={3}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Fontes, E P and Gladfelter, H J and Schaffer, R L and Petty, I T and Hanley-Bowdoin, L}, year={1994}, month={Mar}, pages={405–416} }
 @article{fontes_eagle_sipe_luckow_hanley-bowdoin_1994, title={Interaction between a geminivirus replication protein and origin DNA is essential for viral replication}, volume={269}, journal={Journal of Biological Chemistry}, author={Fontes, E.P.B. and Eagle, P.A. and Sipe, P. and Luckow, V.A. and Hanley-Bowdoin, L.}, year={1994}, pages={8459–8465} }
 @article{pedersen_hanley-bowdoin_1994, title={Molecular Characterization of the AL3 Protein Encoded by a Bipartite Geminivirus}, volume={202}, ISSN={0042-6822}, url={http://dx.doi.org/10.1006/viro.1994.1442}, DOI={10.1006/viro.1994.1442}, number={2}, journal={Virology}, publisher={Elsevier BV}, author={Pedersen, Thomas J. and Hanley-Bowdoin, Linda}, year={1994}, month={Aug}, pages={1070–1075} }
 @article{fontes_luckow_hanley-bowdoin_1992, title={A geminivirus replication protein is a sequence-specific DNA binding protein.}, volume={4}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.4.5.597}, DOI={10.1105/tpc.4.5.597}, number={5}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Fontes, E P and Luckow, V A and Hanley-Bowdoin, L}, year={1992}, month={May}, pages={597–608} }
 @inbook{hanley bowdoin_hemenway_1992, title={Transgenic plants expressing viral genes}, booktitle={Genetic Engineering with Plant Viruses}, publisher={CRC Press, Inc}, author={Hanley Bowdoin, L. and Hemenway, C.}, editor={Wilson, T. Michael A. and Davies, Jeffrey W.Editors}, year={1992}, pages={251–295} }
 @article{hanley-bowdoin_elmer_rogers_1990, title={Expression of functional replication protein from tomato golden mosaic virus in transgenic tobacco plants.}, volume={87}, ISSN={0027-8424 1091-6490}, url={http://dx.doi.org/10.1073/pnas.87.4.1446}, DOI={10.1073/pnas.87.4.1446}, number={4}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Hanley-Bowdoin, L. and Elmer, J. S. and Rogers, S. G.}, year={1990}, month={Feb}, pages={1446–1450} }
 @article{hanley-bowdoin_elmer_rogers_1989, title={Functional expression of the leftward open reading frames of the A component of tomato golden mosaic virus in transgenic tobacco plants.}, volume={1}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.1.11.1057}, DOI={10.1105/tpc.1.11.1057}, number={11}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Hanley-Bowdoin, L and Elmer, J S and Rogers, S G}, year={1989}, month={Nov}, pages={1057–1067} }
 @article{hanley-bowdoin_chua_1989, title={Transcriptional interaction between the promoters of the maize chloroplast genes which encode the β subunit of ATP synthase and the large subunit of ribulose 1,5-bisphosphate carboxylase}, volume={215}, ISSN={0026-8925 1432-1874}, url={http://dx.doi.org/10.1007/bf00339720}, DOI={10.1007/bf00339720}, number={2}, journal={Molecular and General Genetics MGG}, publisher={Springer Science and Business Media LLC}, author={Hanley-Bowdoin, Linda and Chua, Nam-Hai}, year={1989}, month={Jan}, pages={217–224} }
 @article{lam_hanley bowdoin_chua_1988, title={Characterization of a chloroplast sequence-specific DNA binding factor}, volume={263}, journal={Journal of Biological Chemistry}, author={Lam, E. and Hanley Bowdoin, L. and Chua, N. H.}, year={1988}, pages={8288–8293} }
 @article{hanley-bowdoin_chua_1988, title={Transcription of the wheat chloroplast gene that encodes the 32 kd polypeptide}, volume={10}, ISSN={0167-4412 1573-5028}, url={http://dx.doi.org/10.1007/bf00029880}, DOI={10.1007/bf00029880}, number={4}, journal={Plant Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Hanley-Bowdoin, Linda and Chua, Nam-Hai}, year={1988}, pages={303–310} }
 @article{hanley-bowdoin_elmer_rogers_1988, title={Transient expression of heterologous RNAs using tomato golden mosaic virus}, volume={16}, ISSN={0305-1048 1362-4962}, url={http://dx.doi.org/10.1093/nar/16.22.10511}, DOI={10.1093/nar/16.22.10511}, number={22}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Hanley-Bowdoin, L. and Elmer, J. S. and Rogers, S. G.}, year={1988}, month={Nov}, pages={10511–10528} }
 @article{hanley-bowdoin_chua_1987, title={Chloroplast promoters}, volume={12}, ISSN={0968-0004}, url={http://dx.doi.org/10.1016/0968-0004(87)90033-8}, DOI={10.1016/0968-0004(87)90033-8}, journal={Trends in Biochemical Sciences}, publisher={Elsevier BV}, author={Hanley-Bowdoin, Linda and Chua, Nam-Hai}, year={1987}, month={Jan}, pages={67–70} }
 @inbook{orozco_mullet_hanley-bowdoin_chua_1986, title={In vitro transcription of chloroplast protein genes}, ISBN={9780121820183}, ISSN={0076-6879}, url={http://dx.doi.org/10.1016/0076-6879(86)18076-1}, DOI={10.1016/0076-6879(86)18076-1}, booktitle={Methods in Enzymology}, publisher={Elsevier}, author={Orozco, Emil M., Jr. and Mullet, John E. and Hanley-Bowdoin, Linda and Chua, Nam-Hai}, year={1986}, pages={232–253} }
 @article{hanley-bowdoin_orozco_chua_1985, title={In vitro synthesis and processing of a maize chloroplast transcript encoded by the ribulose 1,5-bisphosphate carboxylase large subunit gene.}, volume={5}, ISSN={0270-7306 1098-5549}, url={http://dx.doi.org/10.1128/mcb.5.10.2733}, DOI={10.1128/mcb.5.10.2733}, abstractNote={The large subunit gene (rbcL) of ribulose 1,5-bisphosphate carboxylase was transcribed in vitro by using maize and pea chloroplast extracts and a cloned plastid DNA template containing 172 base pairs (bp) of the maize rbcL protein-coding region and 791 bp of upstream sequences. Three major in vitro RNA species were synthesized which correspond to in vivo maize rbcL RNAs with 5' termini positioned 300, 100 to 105, and 63 nucleotides upstream of the protein-coding region. A deletion of 109 bp, including the "-300" 5' end (the 5' end at position -300), depressed all rbcL transcription in vitro. A plasmid DNA containing this 109-bp fragment was sufficient to direct correct transcription initiation in vitro. A cloned template, containing 191 bp of plastid DNA which includes the -105 and -63 rbcL termini, did not support transcription in vitro. Exogenously added -300 RNA could be converted to the -63 transcript by maize chloroplast extract. These results established that the -300 RNA is the primary maize rbcL transcript, the -63 RNA is a processed form of the -300 transcript, and synthesis of the -105 RNA is dependent on the -300 region. The promoter for the maize rbcL gene is located within the 109 bp flanking the -300 site. Mutagenesis of the 109-bp chloroplast sequence 11 bp upstream of the -300 transcription initiation site reduced rbcL promoter activity in vitro.}, number={10}, journal={Molecular and Cellular Biology}, publisher={American Society for Microbiology}, author={Hanley-Bowdoin, L and Orozco, E M, Jr and Chua, N H}, year={1985}, month={Oct}, pages={2733–2745} }
 @inbook{hanley-bowdoin_orozco_chua_1985, title={Transcription of chloroplast genes by homo-logous and heterologous RNA polymerases}, booktitle={Molecular biology of the photosynthetic apparatus}, publisher={Cold Spring Harbor Press}, author={Hanley-Bowdoin, L. and Orozco, E.M. and Chua, N. H}, editor={Steinback, Katherine E. and Bonitz, Susan and Arntzen, Charles J. and Bogorad, LawrenceEditors}, year={1985}, pages={311–318} }
 @article{hanley-bowdoin_lane_1983, title={A novel protein programmed by the mRNA conserved in dry wheat embryos. The principal site of cysteine incorporation during early germination}, volume={135}, ISSN={0014-2956 1432-1033}, url={http://dx.doi.org/10.1111/j.1432-1033.1983.tb07611.x}, DOI={10.1111/j.1432-1033.1983.tb07611.x}, number={1}, journal={European Journal of Biochemistry}, publisher={Wiley}, author={Hanley-Bowdoin, Linda and Lane, Byron G.}, year={1983}, month={Sep}, pages={9–15} }
 @article{grzelczak_sattolo_hanley-bowdoin_kennedy_lane_1982, title={Synthesis and turnover of proteins and mRNA in germinating wheat embryos}, volume={60}, ISSN={0008-4018}, url={http://dx.doi.org/10.1139/o82-046}, DOI={10.1139/o82-046}, abstractNote={ The most prominent methionine-labeled protein made when cell-free systems are programmed with bulk mRNA from dry wheat embryos has been identified with what may be the most abundant protein in dry wheat embryos. The protein has been brought to purity and has a distinctive amino acid composition, Gly and Glx accounting for almost 40% of the total amino acids. Designated E because of its conspicuous association with early imbibition of dry wheat embryos, the protein and its mRNA are abundant during the "early" phase (0–1 h) of postimbibition development, and easily detected during "lag" phase (1–5 h), but they are almost totally degraded soon after entry into the "growth" phase of development, by about 10 h postimbibition.The most prominent methionine-labeled protein peculiar to the cell-free translational capacity of bulk mRNA from "growth" phase embryos is not detected as a product of in vivo synthesis. Its electrophoretic properties and its time course of emergence, after 5 h postimbibition development, suggest that this major product of cell-free synthesis may be an in vitro counterpart to a prominent methionine-labeled protein made only in vivo, by "growth" phase embryos. Designated G because of its conspicuous association with "growth" phase development, the cell-free product does not comigrate with any prominent dye-stained band in electrophoretic distributions of wheat proteins. The suspected cellular counterpart to G, also, does not comigrate with a prominent dye-stained wheat protein during electrophoresis, and although found in particulate as well as soluble fractions of wheat embryo homogenates it is not concentrated in either nuclei or mitochondria, as isolated. }, number={3}, journal={Canadian Journal of Biochemistry}, publisher={Canadian Science Publishing}, author={Grzelczak, Zbyszko F. and Sattolo, Mark H. and Hanley-Bowdoin, Linda K. and Kennedy, Theresa D. and Lane, Byron G.}, year={1982}, month={Mar}, pages={389–397} }
 @article{kennedy_hanley-bowdoin_lane_1981, title={Structural integrity of RNA and translational integrity of ribosomes in nuclease-treated cell-free protein synthesizing systems prepared from wheat germ and rabbit reticulocytes}, volume={256}, journal={Journal of Biological Chemistry}, author={Kennedy, T.D. and Hanley-Bowdoin, L. and Lane, B.G}, year={1981}, pages={5802–5809} }
 @article{bellvé_anderson_hanley-bowdoin_1975, title={Synthesis and amino acid composition of basic proteins in mammalian sperm nuclei}, volume={47}, ISSN={0012-1606}, url={http://dx.doi.org/10.1016/0012-1606(75)90289-4}, DOI={10.1016/0012-1606(75)90289-4}, number={2}, journal={Developmental Biology}, publisher={Elsevier BV}, author={Bellvé, Anthony R. and Anderson, Everett and Hanley-Bowdoin, Linda}, year={1975}, month={Dec}, pages={349–365} }