Lori Rachel Shapiro

Works (8)

Updated: July 11th, 2023 21:16

2023 article

Herbarium specimens reveal herbivory patterns across the genus Cucurbita

Jenny, L. A., Shapiro, L. R., Davis, C. C., Davies, T. J., Pierce, N. E., & Meineke, E. (2023, January 12). American Journal of Botany.

By: L. Jenny *, L. Shapiro n, C. Davis *, T. Davies *, N. Pierce * & E. Meineke *

author keywords: Acalymma; coevolution; cucumber beetle; Cucurbita; Erwinia tracheiphila; herbarium; herbivory; plant-herbivore interactions; pumpkin; squash
MeSH headings : Humans; Animals; Cucurbita; Herbivory; Insecta; Ecosystem; Biological Evolution; Plants
topics (OpenAlex): Plant and animal studies; Insect behavior and control techniques; Plant Parasitism and Resistance
TL;DR: This study suggests that long-term evolutionary changes in habitat from xeric to mesic climates and wild to human-managed habitats may mediate the levels of herbivory pressure from co-evolved herbivores. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
Source: Web Of Science
Added: March 6, 2023

2021 journal article

The diversity and function of sourdough starter microbiomes

ELife, 10, 1–24.

By: E. Landis *, A. Oliverio *, E. McKenney n , L. Nichols n , N. Kfoury *, M. Biango-Daniels *, L. Shell n, A. Madden n ...

Contributors: E. Landis *, A. Oliverio *, E. McKenney n , L. Nichols n , N. Kfoury *, M. Biango-Daniels *, L. Shell n, A. Madden n ...

MeSH headings : Acetic Acid / metabolism; Bacteria / metabolism; Bread / microbiology; Food Microbiology; Microbiota
topics (OpenAlex): Food composition and properties; Probiotics and Fermented Foods; Gut microbiota and health
TL;DR: The extent of microbial diversity in an ancient fermented food across diverse cultural and geographic backgrounds is revealed and strong co-occurrence patterns observed in situ and recreated in vitro demonstrate that microbial interactions shape sourdough community structure. (via Semantic Scholar)
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Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: January 26, 2021

2020 article

Global cellulose biomass, horizontal gene transfers and domain fusions drive microbial expansin evolution

Chase, W. R., Zhaxybayeva, O., Rocha, J., Cosgrove, D. J., & Shapiro, L. R. (2020, January 13). New Phytologist.

By: W. Chase*, O. Zhaxybayeva *, J. Rocha *, D. Cosgrove * & L. Shapiro*

author keywords: carbohydrate binding module; cell wall; cellulose; domain fusion; expansin; glycoside hydrolase; horizontal gene transfer; plant-microbe interactions
MeSH headings : Biomass; Cell Wall; Cellulose; Gene Transfer, Horizontal; Phylogeny; Plant Proteins / genetics
topics (OpenAlex): Biofuel production and bioconversion; Plant-Microbe Interactions and Immunity; Polysaccharides and Plant Cell Walls
TL;DR: Overall, expansins are unexpectedly widespread in bacteria and eukaryotes, and the contribution of these genes to microbial ecological interactions with plants and algae has likely been underappreciated. (via Semantic Scholar)
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14. Life Below Water (OpenAlex)
Source: Web Of Science
Added: March 10, 2020

2018 article

An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila

Shapiro, L. R., Paulson, J. N., Arnold, B. J., Scully, E. D., Zhaxybayeva, O., Pierce, N. E., … Kolter, R. (2018, October 1). MBio.

By: L. Shapiro n, J. Paulson, B. Arnold *, E. Scully *, O. Zhaxybayeva *, N. Pierce *, J. Rocha *, V. Klepac-Ceraj *, K. Holton *, R. Kolter *

author keywords: Erwinia; agriculture; cucurbit; disease ecology; host jump; monoculture; pathogen emergence
MeSH headings : Cluster Analysis; Cucumis sativus / microbiology; Erwinia / classification; Erwinia / genetics; Erwinia / isolation & purification; Genetic Variation; Genome, Bacterial; Host Specificity; North America; Phylogeography; Plant Diseases / microbiology; Sequence Analysis, DNA; Type III Secretion Systems / genetics; Virulence Factors / genetics; Whole Genome Sequencing
topics (OpenAlex): Plant Pathogenic Bacteria Studies; Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases
TL;DR: Cucumber (Cucumis sativus), which was introduced to North America by early Spanish conquistadors, is the most susceptible host plant species and the only species susceptible to isolates from all three lineages. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
Source: Web Of Science
Added: November 26, 2018

2018 article

Complete Genome Sequence of EtG, the First Phage Sequenced from Erwinia tracheiphila

Andrade-Domínguez, A., Kolter, R., & Shapiro, L. R. (2018, February 21). Genome Announcements.

By: A. Andrade-Domínguez *, R. Kolter * & L. Shapiro n

topics (OpenAlex): Genomics and Phylogenetic Studies; Bacteriophages and microbial interactions; Plant Pathogenic Bacteria Studies
TL;DR: The genome sequence of the temperate phage EtG, which was isolated from an E. tracheiphila-infected cucumber plant, has a linear 30,413-bp double-stranded DNA genome with cohesive ends and 45 predicted open reading frames. (via Semantic Scholar)
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15. Life on Land (Web of Science)
Source: Web Of Science
Added: December 31, 2018

2018 article

Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon (Cucumis melo)

Shapiro, L. R., Andrade, A., Scully, E. D., Rocha, J., Paulson, J. N., & Kolter, R. (2018, October 31). Microbiology Resource Announcements.

By: L. Shapiro*, A. Andrade *, E. Scully *, J. Rocha *, J. Paulson & R. Kolter *

topics (OpenAlex): Plant Pathogenic Bacteria Studies; Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases
TL;DR: The first reference genome of an infected muskmelon (Cucumis melo) is sequences, which assembles into a single chromosomal contig, three plasmid contigs, and one bacteriophage contig. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
Source: Web Of Science
Added: December 31, 2018

2018 article

Evolutionary Determinants of Host and Vector Manipulation by Plant Viruses

Mauck, K. E., Chesnais, Q., & Shapiro, L. R. (2018, January 1). Advances in Virus Research.

By: K. Mauck *, Q. Chesnais * & L. Shapiro n

MeSH headings : Adaptation, Physiological; Animals; Biological Evolution; Environment; Host-Pathogen Interactions; Insect Vectors / physiology; Insect Vectors / virology; Plant Diseases / virology; Plant Viruses / genetics; Plant Viruses / physiology; Plants / genetics; Plants / virology
topics (OpenAlex): Plant Virus Research Studies; Insect symbiosis and bacterial influences; Evolution and Genetic Dynamics
TL;DR: Available literature is synthesized to identify patterns in virus effects among pathogens with shared transmission mechanisms and the results are discussed in the context of molecular and environmental constraints on virus evolution, limitations of existing studies, and prospects for future research. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: December 31, 2018

2017 article

Rhizosphere‐associated Pseudomonas induce systemic resistance to herbivores at the cost of susceptibility to bacterial pathogens

Haney, C. H., Wiesmann, C. L., Shapiro, L. R., Melnyk, R. A., O'Sullivan, L. R., Khorasani, S., … Ausubel, F. M. (2017, October 31). Molecular Ecology.

By: C. Haney *, C. Wiesmann*, L. Shapiro n, R. Melnyk *, L. O'Sullivan *, S. Khorasani*, L. Xiao *, J. Han* ...

author keywords: Arabidopsis; Myzus persicae; Pseudomonas; rhizosphere; Trichoplusia ni
MeSH headings : Arabidopsis / genetics; Arabidopsis / microbiology; Brassicaceae / genetics; Brassicaceae / microbiology; Cyclopentanes / metabolism; Gene Expression Regulation, Plant; Herbivory / genetics; Solanum lycopersicum / genetics; Solanum lycopersicum / microbiology; Oxylipins / metabolism; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Growth Regulators / genetics; Plant Growth Regulators / metabolism; Plant Leaves / genetics; Plant Leaves / microbiology; Pseudomonas syringae / genetics; Pseudomonas syringae / pathogenicity; Rhizosphere; Salicylic Acid / metabolism
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Plant Parasitism and Resistance; Insect-Plant Interactions and Control
TL;DR: The work shows that pleiotropic effects of microbiome modulation of plant defences are important to consider when using microbes to modify plant traits in agriculture. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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