Sharon R Lubkin

Physical models of notochord cell packing reveal how tension ratios determine morphometry

CELLS & DEVELOPMENT, 173.

Bubble packing, eccentricity, and notochord development

CELLS & DEVELOPMENT, 169.

Does viral load alter behavior of the bee parasite Varroa destructor?

PLOS ONE, 14(6).

Tissue geometry may govern lung branching mode selection

JOURNAL OF THEORETICAL BIOLOGY, 442, 22–30.

Tissue self-organization underlies morphogenesis of the notochord

Automated assay and differential model of western honey bee (Apis mellifera) autogrooming using digital image processing

COMPUTERS AND ELECTRONICS IN AGRICULTURE, 135, 338–344.

A note on how to develop interdisciplinary collaborations between experimentalists and theoreticians

Madzvamuse, A., & Lubkin, S. R. (2016, October 6). INTERFACE FOCUS, Vol. 6.

Quantifying cellular and subcellular stretches in embryonic lung epithelia under peristalsis: where to look for mechanosensing

INTERFACE FOCUS, 6(5).

Diffusion coefficients (mum2/s) of various molecules in various fluids.

Figshare.

Morphogenetic Implications of Peristalsis-Driven Fluid Flow in the Embryonic Lung

Figshare. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=DRCI_CEL&KeyUT=DRCI:DATA2016074008585305&KeyUID=DRCI:DATA2016074008585305

Morphogenetic Implications of Peristalsis-Driven Fluid Flow in the Embryonic Lung

Plos One, 10(7).

Morphogenetic implications of peristaltic fluid-tissue dynamics in the embryonic lung

JOURNAL OF THEORETICAL BIOLOGY, 382, 378–385.

Parameters and variables used in estimates and computational model.

Figshare.

Quantifying stretch and secretion in the embryonic lung: Implications for morphogenesis

MECHANISMS OF DEVELOPMENT, 138, 356–363.

S1_File.rar

Figshare.

S1_Video.avi

Figshare.

S2_Video.avi

Figshare.

S3_Video.avi

Figshare.

S4_Video.avi

Figshare.

A Robin-Robin Domain Decomposition Method for a Stokes-Darcy Structure Interaction with a Locally Modified Mesh

Numerical Mathematics-Theory Methods and Applications, 7(4), 435–446.

AN AUGMENTED IMMERSED INTERFACE METHOD FOR MOVING STRUCTURES WITH MASS

DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS-SERIES B, 17(4), 1175–1184.

Embryonic Airway Peristalsis: the Mechanical Framework.

Molecular Biology of the Cell, 23. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000209348605105&KeyUID=WOS:000209348605105

Mechanical control of spheroid growth: Distinct morphogenetic regimes

JOURNAL OF BIOMECHANICS, 45(2), 319–325.

Mechanical Control of Epithelial Growth: Distinct Morphogenetic Regimes

Biophysical Journal, 100(3), 444a.

Regulation of hepatic stem/progenitor phenotype by microenvironment stiffness in hydrogel models of the human liver stem cell niche

BIOMATERIALS, 32(30), 7389–7402.

LUNG ORGANOGENESIS

(P. Koopman, Ed.). ORGANOGENESIS IN DEVELOPMENT, Vol. 90, pp. 73–158.

Analysis and Computation for a Fluid Mixture Model

Communications in Computational Physics, 5(2-4), 620–634. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000263563600023&KeyUID=WOS:000263563600023

Analysis and computation for a fluid mixture model

Communications in Computational Physics, 5(2-4), 620–634.

Convergent extension by intercalation without mediolaterally fixed cell motion

JOURNAL OF THEORETICAL BIOLOGY, 256(2), 180–186.

Branched organs: Mechanics of morphogenesis by multiple mechanisms

(S. Schnell, P. K. Maini, S. A. Newman, & T. J. Newman, Eds.) [Review of ]. MULTISCALE MODELING OF DEVELOPMENTAL SYSTEMS, 81, 249-+.

Mechanics of mesenchymal contribution to clefting force in branching morphogenesis

BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 7(5), 417–426.

An augmented approach for the pressure boundary condition in a Stokes flow

Communications in Computational Physics, 1(5), 874–885. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000241516600006&KeyUID=WOS:000241516600006

Developmental biology: Branching morphogenesis

In Complex Systems Science in BioMedicine (pp. 357–374). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=BCI&KeyUT=BCI:BCI200700025770&KeyUID=BCI:BCI200700025770

Optimizing detection of tissue anisotropy by fluorescence recovery after photobleaching

BULLETIN OF MATHEMATICAL BIOLOGY, 68(8), 1873–1891.

Quantifying the significance of phage attack on starter cultures: a mechanistic model for population dynamics of phage and their hosts isolated from fermenting sauerkraut

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(6), 3908–3915.

Semi-mechanistic partial buffer approach to modeling pH, the buffer properties, and the distribution of ionic species in complex solutions

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 54(16), 6021–6029.

Quantifying Vasculature: New Measures Applied to Arterial Trees in the Quail Chorioallantoic Membrane

Journal of Theoretical Medicine, 6(3), 173–180.

Enhanced growth of tumors in SPARC null mice is associated with changes the ECM

JOURNAL OF CLINICAL INVESTIGATION, 111(4), 487–495.

Enhanced growth of tumors in SPARC null mice is associated with changes the ECM

Journal of Clinical Investigation, 111(4), 487–495.

Energy-based dynamic model for variable temperature batch fermentation by Lactococcus lactis

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(5), 2468–2478.

Force and deformation on branching rudiments: cleaving between hypotheses

BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 1(1), 5–16.

Mechanistic modeling of pH and buffer capacity during the growth of Listeria monocytogenes and Lactococcus lactis in vegetable broth medium

Abstracts of the General Meeting of the American Society for Microbiology, 102, 263. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=BCI&KeyUT=BCI:BCI200200597258&KeyUID=BCI:BCI200200597258

Multiphase mechanics of capsule formation in tumors

JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 124(2), 237–243.

An energy-based approach for modeling the batch culture of Lactococcus lactis in vegetable broth

Abstracts of the General Meeting of the American Society for Microbiology, 101, 434–435. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=BCI&KeyUT=BCI:BCI200200212002&KeyUID=BCI:BCI200200212002

Biomathematics

Encyclopedia of Mathematics Education, 77–78.

Epithelial branching

Numerical analysis of interfacial two-dimensional Stokes flow with discontinuous viscosity and variable surface tension

INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, 37(5), 525–540.

A minimal mechanism for bacterial pattern formation

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 266(1416), 299–304.

Mathematical and experimental analysis of localization of anti-tumour antibody-enzyme conjugates

BRITISH JOURNAL OF CANCER, 80(11), 1747–1753.

Model and analysis of chemotactic bacterial patterns in a liquid medium

JOURNAL OF MATHEMATICAL BIOLOGY, 38(4), 359–375.

Theoretical analysis of conjugate localization in two-step cancer chemotherapy

JOURNAL OF MATHEMATICAL BIOLOGY, 39(4), 353–376.

A mechanical theory of in vitro vascular network formation

In Cardiovascular Molecular Morphogenesis Series; Vascular morphogenesis: In vivo, in vitro, in mente (pp. 173–188). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=BIOSIS&KeyUT=BIOSIS:PREV199900155952&KeyUID=BIOSIS:PREV199900155952

A mechanical theory of in vitro vascular network formation

In V. M. C. D. Little & E. H. Sage (Eds.), Vascular morphogenesis: in vivo, in vitro, in mente (pp. 173–188).

Spatial pattern formation in biology: I. Dermal wound healing. II. Bacterial patterns

JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS, 335B(2), 303–332.

Dynamics within tissues stresses, growth, and morphogenesis

In A. D. W. Alt & G. Dunn (Eds.), Dynamics of cell and tissue motion (pp. 211–284). Basel: Birkhauser Verlag.

Mechanisms for Branching Morphogenesis of the Lung

(A. D. W. Alt & G. Dunn, Eds.). Dynamics of Cell and Tissue Motion, pp. 229–234.

Mechanisms for branching morphogenesis of the lung

In W. Alt, A. Deutsch, & G. Dunn (Eds.), Dynamics of Cell and Tissue Motion (pp. 229–234). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000071666700027&KeyUID=WOS:000071666700027

On pattern formation in reptilian dentition

JOURNAL OF THEORETICAL BIOLOGY, 186(2), 145–157.

Use of an epidemiologic model to evaluate feline leukemia virus control measures

Feline Practice, 25(4), 6–11. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:A1997XU72500002&KeyUID=WOS:A1997XU72500002

A mechanical model for the formation of vascular networks in vitro

Acta Biotheoretica, 44(3-4), 271–282. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:A1996VW59000008&KeyUID=WOS:A1996VW59000008

Evaluation of feline leukemia virus control measures

Journal of Theoretical Biology, 178(1), 53–60.

Modelling the spatial patterning of teeth primordia in the alligator

Acta Biotheoretica, 44(2), 153–164.

On a model mechanism for the spatial patterning of teeth primordia in alligator

Journal of Theoretical Biology, 180(4), 287–296.

Simple versus sophisticated models of breath alcohol exhalation profiles

Alcohol and Alcoholism, 31(1), 61–67. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:A1996UF38500008&KeyUID=WOS:A1996UF38500008

A MECHANISM FOR EARLY BRANCHING IN LUNG MORPHOGENESIS

Journal of Mathematical Biology, 34(1), 77–94.

A pair formation approach to modeling inheritance of social traits

In V. Lakshmikantham (Ed.), World Congress of Nonlinear Analysis '92, Vols 1-4 (pp. 3227–3234). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:A1995BF46J00295&KeyUID=WOS:A1995BF46J00295

Modelling the spatial patterning of the teeth primordia in the lower jaw of Alligator mississippiensis

Journal of Biological Systems, Vol 3, Nos 1-4, 1995: Special Issue: 2nd Ecmbm-Lyon, Pts 1-4, 975–985. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:A1995BF06V00086&KeyUID=WOS:A1995BF06V00086

OSCILLATORY REACTION-DIFFUSION EQUATIONS ON RINGS

Journal of Mathematical Biology, 32(6), 617–632.

UNIDIRECTIONAL WAVES ON RINGS - MODELS FOR CHIRAL PREFERENCE OF CIRCUMNUTATING PLANTS

Bulletin of Mathematical Biology, 56(5), 795–810.

A thin-shell model of the cornea and its application to corneal surgery.

Refractive &Amp; Corneal Surgery, 8(2), 183–186. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:1591214&KeyUID=MEDLINE:1591214

ANALYTICAL MODEL OF CORNEAL SURGERY

Journal of Biomechanical Engineering-Transactions of the Asme, 113(2), 239–241.

ANALYTICAL MODEL OF CORNEAL SURGERY

Investigative Ophthalmology and Visual Science, 31(4 ABSTR. ISSUE), 481. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=BCI&KeyUT=BCI:BCI199039098517&KeyUID=BCI:BCI199039098517