@article{maurer_seminoff_reiskind_stapleton_2024, title={Diverse migratory strategies for a hawksbill sea turtle population}, volume={1}, ISSN={["1099-0755"]}, url={http://dx.doi.org/10.1002/aqc.4080}, DOI={10.1002/aqc.4080}, abstractNote={Abstract}, journal={AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS}, author={Maurer, Andrew S. and Seminoff, Jeffrey A. and Reiskind, Martha O. Burford and Stapleton, Seth P.}, year={2024}, month={Jan} }
 @article{dillon_thomas_mousseau_betz_kleiman_reiskind_breen_2023, title={Population dynamics and genome-wide selection scan for dogs in Chernobyl}, volume={10}, url={http://dx.doi.org/10.1186/s40575-023-00124-1}, DOI={10.1186/s40575-023-00124-1}, abstractNote={Abstract}, number={1}, journal={Canine Medicine and Genetics}, publisher={Springer Science and Business Media LLC}, author={Dillon, Megan and Thomas, Rachael and Mousseau, Timothy and Betz, Jennifer Anne and Kleiman, Norman and Reiskind, Martha Burford and Breen, Matthew}, year={2023}, month={Mar} }
 @article{reed_reiskind_reiskind_2022, title={Life-history stage and the population genetics of the tiger mosquito Aedes albopictus at a fine spatial scale}, volume={10}, ISSN={["1365-2915"]}, url={http://dx.doi.org/10.1111/mve.12618}, DOI={10.1111/mve.12618}, abstractNote={Abstract}, journal={MEDICAL AND VETERINARY ENTOMOLOGY}, publisher={Wiley}, author={Reed, Emily M. X. and Reiskind, Michael H. and Reiskind, Martha O. Burford}, year={2022}, month={Oct} }
 @article{wallace_reed_aguilar_reiskind_2022, title={Resolving the phylogenetic relationship among recently diverged members of the rockfish subgenus Sebastosomus}, volume={173}, ISSN={["1095-9513"]}, DOI={10.1016/j.ympev.2022.107515}, abstractNote={Rapid speciation is an important aspect of adaptive radiations, but can obfuscate phylogenetic relationships among taxa. For recent radiations, there are challenges to reconstructing the relationships among the species due to often shorter branch lengths. Resolution of these relationships is further confounded when studies only use a few genetic markers. Double digest restriction-site associated DNA sequencing (ddRADseq) is a method of next generation sequencing that identifies many single nucleotide polymorphisms (SNPs) throughout the genome. This increases statistical power to resolve close phylogenetic relationships like those found within an adaptive radiation. We used this approach to understand the evolutionary history of the rockfishes of the genus Sebastes, which experienced an adaptive radiation between 3 and 5 mya. Here, we reconstructed the phylogenetic relationships among six species of rockfish within the subgenus Sebastosomus using over 11,600 SNPs. This reconstruction includes the two recently diverged species, Sebastes mystinus and S. diaconus, that were first described genetically in 2008 using mtDNA control region sequence data and six microsatellite loci. We confirmed the relationship of these cryptic species as sister-taxa and found evidence that S. melanops and S. flavidus were also sister-taxa. The latter contradicts prior studies but is supported by our reconstruction using nuclear DNA and measures of genetic differentiation tests and a discriminant analysis of principal components. The relationships between the species of Sebastosomus are further supported by morphological, biological, and ecological justifications.}, journal={MOLECULAR PHYLOGENETICS AND EVOLUTION}, author={Wallace, E. N. and Reed, E. M. X. and Aguilar, A. and Reiskind, M. O. Burford}, year={2022}, month={Aug} }
 @misc{resolving the phylogenetic relationship among recently diverged members of the rockfish subgenus sebastosomus_2022, DOI={10.5061/dryad.6t1g1jx1n}, journal={Dryad}, year={2022}, month={Apr} }
 @article{gabor_kivlin_hua_bickford_reiskind_wright_2022, title={Understanding Organismal Capacity to Respond to Anthropogenic Change: Barriers and Solutions}, volume={61}, ISSN={["1557-7023"]}, url={http://dx.doi.org/10.1093/icb/icab162}, DOI={10.1093/icb/icab162}, abstractNote={Synopsis}, number={6}, journal={INTEGRATIVE AND COMPARATIVE BIOLOGY}, publisher={Oxford University Press (OUP)}, author={Gabor, Caitlin R. and Kivlin, Stephanie N. and Hua, Jessica and Bickford, Nate and Reiskind, Martha O. Burford and Wright, Timothy F.}, year={2022}, month={Feb}, pages={2132–2144} }
 @article{reiskind_moody_bolnick_hanifin_farrior_2021, title={Nothing in Evolution Makes Sense Except in the Light of Biology}, volume={71}, ISSN={["1525-3244"]}, DOI={10.1093/biosci/biaa170}, abstractNote={Abstract}, number={4}, journal={BIOSCIENCE}, author={Reiskind, Martha O. Burford and Moody, Michael L. and Bolnick, Daniel I and Hanifin, Charles T. and Farrior, Caroline E.}, year={2021}, month={Apr}, pages={370–382} }
 @article{maurer_seminoff_layman_stapleton_godfrey_reiskind_2021, title={Population Viability of Sea Turtles in the Context of Global Warming}, volume={71}, ISSN={["1525-3244"]}, DOI={10.1093/biosci/biab028}, abstractNote={Abstract}, number={8}, journal={BIOSCIENCE}, author={Maurer, Andrew S. and Seminoff, Jeffrey A. and Layman, Craig A. and Stapleton, Seth P. and Godfrey, Matthew H. and Reiskind, Martha O. Burford}, year={2021}, month={Aug}, pages={790–804} }
 @article{population viability of sea turtles in the context of global warming_2021, DOI={doi:10.1093/biosci/biab028}, abstractNote={Abstract}, journal={BioScience}, year={2021} }
 @article{maurer_stapleton_layman_reiskind_2021, title={The Atlantic Sargassum invasion impedes beach access for nesting sea turtles}, volume={2}, url={http://dx.doi.org/10.1016/j.ecochg.2021.100034}, DOI={10.1016/j.ecochg.2021.100034}, abstractNote={One characteristic of global change is an increase in the frequency and magnitude of algae blooms. Although a large body of work has documented severe ecological impacts, such as mortality due to toxins or hypoxia, less research has described sublethal effects that may still affect population dynamics. Here, we focus on blooming Sargassum macroalgae in the North Atlantic and describe effects on nesting sea turtles. Since 2011, large masses of the algae have been inundating Atlantic nesting habitats. We documented the accumulation of Sargassum at Long Island, Antigua, and quantified effects on a rookery of hawksbill sea turtles (Eretmochelys imbricata). Using monitoring data from 2010 to 2019, we analyzed population- and individual-level patterns in nesting. Our results suggest that sea turtles respond to Sargassum at nesting beaches by shifting space use away from heavily impacted areas. We also tested for an effect on nesting success, but found no change in the years and areas most impacted by Sargassum. The algae may not increase the energetic costs of nesting after a turtle has emerged onto the beach, but we speculate that costs are imposed in algae-filled waters as turtles initially seek to emerge. As the Sargassum “invasion” continues, sea turtles at impacted sites will need to exhibit plasticity when choosing nesting sites, and nest densities may increase in areas with less Sargassum present. Individuals may also be required to expend more energy per nesting season. More broadly, this work demonstrates that algae blooms can have sublethal effects on fauna that affect population dynamics.}, journal={Climate Change Ecology}, publisher={Elsevier BV}, author={Maurer, Andrew S. and Stapleton, Seth P. and Layman, Craig A. and Reiskind, Martha O. Burford}, year={2021}, month={Dec}, pages={100034} }
 @article{gridlock and beltways: the genetic context of urban invasions_2020, url={http://dx.doi.org/10.1007/s00442-020-04614-y}, DOI={10.1007/s00442-020-04614-y}, abstractNote={The rapid expansion of urban land across the globe presents new and numerous opportunities for invasive species to spread and flourish. Ecologists historically rejected urban ecosystems as important environments for ecology and evolution research but are beginning to recognize the importance of these systems in shaping the biology of invasion. Urbanization can aid the introduction, establishment, and spread of invaders, and these processes have substantial consequences on native species and ecosystems. Therefore, it is valuable to understand how urban areas influence populations at all stages in the invasion process. Population genetic tools are essential to explore the driving forces of invasive species dispersal, connectivity, and adaptation within cities. In this review, we synthesize current research about the influence of urban landscapes on invasion genetics dynamics. We conclude that urban areas are not only points of entry for many invasive species, they also facilitate population establishment, are pools for genetic diversity, and provide corridors for further spread both within and out of cities. We recommend the continued use of genetic studies to inform invasive species management and to understand the underlying ecological and evolutionary processes governing successful invasion.}, journal={Oecologia}, year={2020}, month={Mar} }
 @article{identification of candidate loci for adaptive phenotypic plasticity in natural populations of spadefoot toads_2020, url={http://dx.doi.org/10.1002/ece3.6602}, DOI={10.1002/ece3.6602}, abstractNote={Abstract}, journal={Ecology and Evolution}, year={2020}, month={Jul} }
 @article{maintaining historic disturbance regimes increases species' resilience to catastrophic hurricanes_2019, url={http://dx.doi.org/10.1111/gcb.14932}, DOI={10.1111/gcb.14932}, abstractNote={Abstract}, journal={Global Change Biology}, year={2019}, month={Dec} }
 @article{patterns of genetic divergence among populations of aedes aegypti l. (diptera: culicidae) in the southeastern usa_2019, url={http://dx.doi.org/10.1186/s13071-019-3769-0}, DOI={10.1186/s13071-019-3769-0}, abstractNote={Abstract}, journal={Parasites & Vectors}, year={2019}, month={Dec} }
 @article{reiskind_reed_elias_giacomini_mcnear_nieuwsma_parker_roberts_rossi_stephenson_et al._2019, title={The genomics of invasion: characterization of red lionfish (Pterois volitans) populations from the native and introduced ranges}, volume={21}, ISSN={["1573-1464"]}, url={http://dx.doi.org/10.1007/s10530-019-01992-0}, DOI={10.1007/s10530-019-01992-0}, number={7}, journal={BIOLOGICAL INVASIONS}, author={Reiskind, M. O. Burford and Reed, E. M. X. and Elias, A. and Giacomini, J. J. and McNear, A. F. and Nieuwsma, J. and Parker, G. A. and Roberts, R. B. and Rossi, R. E. and Stephenson, C. N. and et al.}, year={2019}, month={Jul}, pages={2471–2483} }
 @article{reiskind_reed_elias_giacomini_mcnear_nieuwsma_parker_roberts_rossi_stephenson_et al._2019, title={The genomics of invasion: characterization of red lionfish (Pterois volitans) populations from the native and introduced ranges (vol 21, pg 2471, 2019)}, volume={21}, ISSN={["1573-1464"]}, DOI={10.1007/s10530-019-01999-7}, abstractNote={In the original publication of this article, Figs. 2 and 3 were published incorrectly.}, number={7}, journal={BIOLOGICAL INVASIONS}, author={Reiskind, M. O. Burford and Reed, E. M. X. and Elias, A. and Giacomini, J. J. and McNear, A. F. and Nieuwsma, J. and Parker, G. A. and Roberts, R. B. and Rossi, R. E. and Stephenson, C. N. and et al.}, year={2019}, month={Jul}, pages={2485–2487} }
 @article{burford reiskind_labadie_bargielowski_lounibos_reiskind_2018, title={Rapid evolution and the genomic consequences of selection against interspecific mating}, volume={27}, ISSN={0962-1083}, url={http://dx.doi.org/10.1111/mec.14821}, DOI={10.1111/mec.14821}, abstractNote={Abstract}, number={18}, journal={Molecular Ecology}, publisher={Wiley}, author={Burford Reiskind, Martha O. and Labadie, Paul and Bargielowski, Irka and Lounibos, L. Philip and Reiskind, Michael H.}, year={2018}, month={Aug}, pages={3641–3654} }
 @article{reiskind_coyle_daniels_labadie_reiskind_roberts_roberts_schaff_vargo_2016, title={Application of a modified double digest RAD sequencing approach to non-model, ecologically important taxa}, volume={16}, journal={Mol Ecol Resources}, author={Reiskind, Burford and Coyle, K. and Daniels, H.V. and Labadie, P. and Reiskind, M.H. and Roberts, N.B. and Roberts, R.B. and Schaff, J.L. and Vargo, E.L.}, year={2016}, pages={1303–1314} }
 @article{burford reiskind_coyle_daniels_labadie_reiskind_roberts_roberts_schaff_vargo_2016, title={Development of a universal double-digest RAD sequencing approach for a group of nonmodel, ecologically and economically important insect and fish taxa}, volume={16}, ISSN={1755-098X}, url={http://dx.doi.org/10.1111/1755-0998.12527}, DOI={10.1111/1755-0998.12527}, abstractNote={Abstract}, number={6}, journal={Molecular Ecology Resources}, publisher={Wiley}, author={Burford Reiskind, M. O. and Coyle, K. and Daniels, H. V. and Labadie, P. and Reiskind, M. H. and Roberts, N. B. and Roberts, R. B. and Schaff, J. and Vargo, E. L.}, year={2016}, month={May}, pages={1303–1314} }
 @article{burford_scarpa_cook_hare_2014, title={Local adaptation of a marine invertebrate with a high dispersal potential: evidence from a reciprocal transplant experiment of the eastern oyster Crassostrea virginica}, volume={505}, DOI={10.3354/meps10796}, abstractNote={We examined the role of local adaptation in structuring the stable genetic step-cline of the eastern oyster Crassostrea virginica along an environmental gradient in the lagoon system of eastern Florida, USA. Reciprocally transplanted progeny, produced by a 10 × 10 genetic cross of wild brood stock from northern and southern genetic lineages yielded significant evidence of local adaptation (interaction of genes and environment) in variables related to fitness, including survival, wet meat weight, and reproductive maturation. The strength of local adaptation was asymmetric, with greater effects on the northern compared to the southern genetic lineage. To a lesser extent, we found evidence of both the role of environment (in particular, adverse effects on both genetic crosses in the southern region), and the role of genetic differences between the 2 crosses independent of environment, with higher initial growth of the southern genetic lineage and higher condition of the northern lineage. These differences suggest that maintenance of the genetic step-cline involves natural selection. We discuss the potential role of temperature and phytoplankton community composition between the northern and southern regions. Our study is the first to determine the genetic basis for fitness-related phenotypes, and to relate this to local adaptation of the eastern oyster. Understanding the role of the environment in structuring the eastern oyster throughout its range is critical for effective management, and the results of this study also suggest that small environmental changes may have significant effects on conservation of the eastern oyster, particularly in the northern genetic lineage.}, journal={Marine Ecology Progress Series}, publisher={Inter-Research Science Center}, author={Burford, MO and Scarpa, J and Cook, BJ and Hare, MP}, year={2014}, month={May}, pages={161–175} }
 @article{burford_carr_bernardi_2011, title={Age-structured genetic analysis reveals temporal and geographic variation within and between two cryptic rockfish species}, volume={442}, DOI={10.3354/meps09329}, abstractNote={The spatial patterns of genetic structure among juveniles of long-lived species can reveal the extent of interannual and geographic variation in realized larval dispersal as well as the processes that determine ecologically relevant patterns of population connectivity. However, few studies examine this temporal and spatial variation over large portions of a species' geographic range or between cryptic species that overlap in their range. Despite the potential for long-dis- tance dispersal in blue rockfish Sebastes mystinus, a previous study of adults revealed two geo- graphically distinct, cryptic species. To determine year-to-year variation in the patterns of spatial connectivity and to elucidate the potential ecological mechanisms involved in shaping new year- classes and maintaining cryptic species, we sampled juveniles within California, USA, where both cryptic species coexist. Using microsatellite markers, we found geographic and temporal variation in the number of individuals from these distinct cryptic species within 2 new year-classes of juve- nile S. mystinus. We also found differences in the geographic patterns of genetic structure of the 2 cryptic species. Whereas one species exhibited little or no spatial genetic structure across the study region, the other exhibited a complex geographic pattern of genetic structure, with little or no genetic structure among regions, but small-scale structure within a region. The results of this study demonstrate that the spatial scales and patterns of realized dispersal of pelagic larvae vary geographically, interannually, and between closely related species with similar life-history strate- gies. Therefore, estimates of dispersal based on larval duration and patterns of adult structure need to be interpreted cautiously.}, journal={Marine Ecology Progress Series}, publisher={Inter-Research Science Center}, author={Burford, MO and Carr, MH and Bernardi, G}, year={2011}, pages={201–215} }
 @article{burford_bernardi_carr_2011, title={Analysis of individual year-classes of a marine fish reveals little evidence of first-generation hybrids between cryptic species in sympatric regions}, volume={158}, ISSN={0025-3162 1432-1793}, url={http://dx.doi.org/10.1007/s00227-011-1694-7}, DOI={10.1007/s00227-011-1694-7}, number={8}, journal={Marine Biology}, publisher={Springer Science and Business Media LLC}, author={Burford, Martha O. and Bernardi, Giacomo and Carr, Mark H.}, year={2011}, month={Apr}, pages={1815–1827} }
 @article{hare_nunney_schwartz_ruzzante_burford_waples_ruegg_palstra_2011, title={Understanding and Estimating Effective Population Size for Practical Application in Marine Species Management}, volume={25}, DOI={10.1111/j.1523-1739.2010.01637.x}, abstractNote={Abstract:  Effective population size (Ne) determines the strength of genetic drift in a population and has long been recognized as an important parameter for evaluating conservation status and threats to genetic health of populations. Specifically, an estimate of Ne is crucial to management because it integrates genetic effects with the life history of the species, allowing for predictions of a population's current and future viability. Nevertheless, compared with ecological and demographic parameters, Ne has had limited influence on species management, beyond its application in very small populations. Recent developments have substantially improved Ne estimation; however, some obstacles remain for the practical application of Ne estimates. For example, the need to define the spatial and temporal scale of measurement makes the concept complex and sometimes difficult to interpret. We reviewed approaches to estimation of Ne over both long‐term and contemporary time frames, clarifying their interpretations with respect to local populations and the global metapopulation. We describe multiple experimental factors affecting robustness of contemporary Ne estimates and suggest that different sampling designs can be combined to compare largely independent measures of Ne for improved confidence in the result. Large populations with moderate gene flow pose the greatest challenges to robust estimation of contemporary Ne and require careful consideration of sampling and analysis to minimize estimator bias. We emphasize the practical utility of estimating Ne by highlighting its relevance to the adaptive potential of a population and describing applications in management of marine populations, where the focus is not always on critically endangered populations. Two cases discussed include the mechanisms generating Ne estimates many orders of magnitude lower than census N in harvested marine fishes and the predicted reduction in Ne from hatchery‐based population supplementation.}, number={3}, journal={Conservation Biology}, publisher={Wiley}, author={HARE, MATTHEW P. and NUNNEY, LEONARD and SCHWARTZ, MICHAEL K. and RUZZANTE, DANIEL E. and BURFORD, MARTHA and WAPLES, ROBIN S. and RUEGG, KRISTEN and PALSTRA, FRISO}, year={2011}, month={Feb}, pages={438–449} }
 @article{burford_2009, title={Demographic history, geographical distribution and reproductive isolation of distinct lineages of blue rockfish (Sebastes mystinus), a marine fish with a high dispersal potential}, volume={22}, DOI={10.1111/j.1420-9101.2009.01760.x}, abstractNote={Abstract}, number={7}, journal={Journal of Evolutionary Biology}, publisher={Wiley}, author={BURFORD, M. O.}, year={2009}, month={Jul}, pages={1471–1486} }
 @article{vagelli_burford_bernardi_2008, title={Fine scale dispersal in Banggai Cardinalfish, Pterapogon kauderni, a coral reef species lacking a pelagic larval phase}, volume={1}, DOI={10.1016/j.margen.2009.01.001}, abstractNote={Dispersal in marine species results from complex interactions between biotic and abiotic factors. Importantly, the pelagic larval phase of most marine species adds a significant degree of complexity. Therefore, a growing body of work is focusing on those rare species that lack a pelagic larval phase (usually brooding species). For such species, large-scale gene flow has been shown to be very low, thus following the expectation of a relationship between realized dispersal and pelagic larval duration. Yet, little is known about the dispersal of those species at very small geographic scales. In this study, we focused on the Banggai Cardinalfish, Pterapogon kauderni, a mouthbrooding species that lacks a pelagic larval phase. Based on previously identified microsatellites, we scored 12 populations around the southern island of Bangkulu, in the Banggai Archipelago, Indonesia. While only 60 km in perimeter, we found that this island harbors very distinct populations of P. kauderni. Indeed, assignment tests self-assigned 10 out of those 12 populations. These results mirror the very high level of self-assignment at the level of the entire archipelago, where, out of 13 populations, 70% of the individuals were reassigned to their source population. Therefore, our data show consistency between small and large-scale dispersal. In addition, in light of the recent expansion in the harvesting of this species for the pet trade, our data have important conservation implications.}, number={3-4}, journal={Marine Genomics}, publisher={Elsevier BV}, author={Vagelli, Alejandro and Burford, Martha and Bernardi, Giacomo}, year={2008}, month={Sep}, pages={129–134} }
 @article{burford_bernardi_2008, title={Incipient speciation within a subgenus of rockfish (Sebastosomus) provides evidence of recent radiations within an ancient species flock}, volume={154}, DOI={10.1007/s00227-008-0963-6}, number={4}, journal={Marine Biology}, publisher={Springer Nature}, author={Burford, Martha O. and Bernardi, Giacomo}, year={2008}, month={Apr}, pages={701–717} }
 @article{burford_larson_2006, title={Genetic heterogeneity in a single year-class from a panmictic population of adult blue rockfish (Sebastes mystinus)}, volume={151}, DOI={10.1007/s00227-006-0475-1}, number={2}, journal={Marine Biology}, publisher={Springer Nature}, author={Burford, Martha O. and Larson, Ralph J.}, year={2006}, month={Oct}, pages={451–465} }