Works (21)

Updated: November 12th, 2023 05:00

2023 journal article

Draft genome sequence of Paenibacillus sp. strain RC67, an isolate from a long-term forest soil warming experiment in Petersham, Massachusetts

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10.

By: W. Tran*, B. Sullivan*, C. Kitzmiller*, M. Choudoir n, R. Simoes*, N. Dayarathne*, K. Deangelis*

co-author countries: United States of America 🇺🇸
author keywords: soil microbiology; microbial ecology; bioinformatics
Sources: Web Of Science, ORCID
Added: November 6, 2023

2023 journal article

High-quality genomes of Paenibacillus spp. RC334 and RC343, isolated from a long-term forest soil warming experiment

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 8.

By: C. Kitzmiller*, W. Tran*, B. Sullivan*, F. Cortez*, M. Choudoir n, R. Simoes*, N. Dayarathne*, K. Deangelis*

co-author countries: United States of America 🇺🇸
author keywords: soil microbiology; climate change
Sources: Web Of Science, ORCID
Added: September 11, 2023

2022 journal article

A framework for integrating microbial dispersal modes into soil ecosystem ecology

IScience, 25(3), 103887.

By: M. Choudoir* & K. DeAngelis*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: September 18, 2022

2022 article

Chitosan diet alters the microbiome of adult house flies

Schaal, H., Choudoir, M. J., Diwanji, V., Stoffolano, J., Jr., & DeAngelis, K. M. (2022, August 31).

By: H. Schaal*, M. Choudoir n, V. Diwanji*, J. Stoffolano* & K. DeAngelis*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: September 18, 2022

2022 journal article

Reciprocal Inclusion of Microbiomes and Environmental Justice Contributes Solutions to Global Environmental Health Challenges

MSystems, 7(3).

By: M. Choudoir* & E. Eggleston*

co-author countries: United States of America 🇺🇸

Contributors: M. Choudoir*

Ed(s): S. Ishaq

author keywords: microbiome; environmental microbes; environmental justice; social equity; global change; stewardship; research ethics; microbiome stewardship
MeSH headings : Humans; Environmental Justice; Environmental Health; Microbiota
Source: ORCID
Added: September 19, 2022

2022 journal article

Streptomyces apricus sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology, 72(1).

co-author countries: United States of America 🇺🇸
author keywords: Streptomyces; soil; species description; apricus
MeSH headings : Bacterial Typing Techniques; Base Composition; DNA, Bacterial / genetics; Fatty Acids / chemistry; Phospholipids / chemistry; Phylogeny; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA; Soil Microbiology; Streptomyces / classification; Streptomyces / isolation & purification; Wisconsin
Source: ORCID
Added: September 18, 2022

2021 article

A non-adaptive demographic mechanism for genome expansion in Streptomyces

Choudoir, M. J., Järvenpää, M. J., Marttinen, P., & Buckley, D. H. (2021, January 11). (Vol. 1). Vol. 1.

co-author countries: Finland 🇫🇮 United States of America 🇺🇸

Contributors: M. Choudoir*

Source: ORCID
Added: September 19, 2022

2021 journal article

Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice

MSystems, 6(4).

co-author countries: Antigua and Barbuda 🇦🇬 Canada 🇨🇦 Chile 🇨🇱 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Netherlands 🇳🇱 United States of America 🇺🇸

Ed(s): J. Gilbert

author keywords: biopolitics; health disparities; social determinants of health; structural determinants of health; integrated research; microbiomes
Source: ORCID
Added: September 18, 2022

2020 journal article

Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics

Ecology, 101(10).

co-author countries: United States of America 🇺🇸
author keywords: ammonium; carbon cycle; carbon sequestration; microbial biomass; microbial diversity; mineral associated organic matter; nitrate; particulate organic matter; stable isotope probing; target gene sequencing; VOC
MeSH headings : Carbon; Microbiota; Plant Leaves; Soil; Soil Microbiology; Volatile Organic Compounds
Source: ORCID
Added: September 18, 2022

2019 journal article

A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria

MSystems, 4(2).

By: M. Choudoir*, S. Rossabi*, M. Gebert*, D. Helmig* & N. Fierer*

co-author countries: United States of America 🇺🇸

Ed(s): K. Whiteson

author keywords: Actinobacteria; VOC; actinomycetes; microbial interactions; natural products; volatile organic compounds
Source: ORCID
Added: September 18, 2022

2018 journal article

Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces

Antibiotics, 7(1), 12.

By: M. Choudoir*, C. Pepe-Ranney* & D. Buckley*

co-author countries: United States of America 🇺🇸
author keywords: Streptomyces; biogeography; comparative genomics; diversification; secondary metabolite biosynthetic gene clusters; SMGC; natural products
Source: ORCID
Added: September 18, 2022

2018 journal article

Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa

The ISME Journal, 12(9), 2176–2186.

By: M. Choudoir* & D. Buckley*

co-author countries: United States of America 🇺🇸
MeSH headings : Climate; Gene Flow; Genome, Bacterial; Genomics; Phenotype; Phylogeny; Phylogeography; Streptomyces / classification; Streptomyces / genetics; Streptomyces / isolation & purification; Temperature
Source: ORCID
Added: September 18, 2022

2018 journal article

Variation in range size and dispersal capabilities of microbial taxa

ECOLOGY, 99(2), 322–334.

By: M. Choudoir*, A. Barberan*, H. Menninger n, R. Dunn n & N. Fierer*

co-author countries: United States of America 🇺🇸

Contributors: M. Choudoir*, A. Barberán*, H. Menninger n, R. Dunn n & N. Fierer*

author keywords: biogeography; dispersal; dust-associated microbes; geographic range size; microbial dispersal; microbiology
MeSH headings : Animals; Archaea; Bacteria / classification; Ecosystem; Plants
Sources: ORCID, Web Of Science
Added: August 6, 2018

2018 journal article

Volatile Organic Compound Emissions From Soil Following Wetting Events

Journal of Geophysical Research: Biogeosciences, 123(6), 1988–2001.

By: S. Rossabi*, M. Choudoir*, D. Helmig*, J. Hueber* & N. Fierer*

co-author countries: United States of America 🇺🇸
author keywords: volatile organic compounds; soil; rewetting pulse; carbon emission rates; carbon flux; carbon dynamics; birch effect
Source: ORCID
Added: September 18, 2022

2017 journal article

Genome Surfing As Driver of Microbial Genomic Diversity

Trends in Microbiology, 25(8), 624–636.

co-author countries: United States of America 🇺🇸
MeSH headings : Gene Transfer, Horizontal; Genetic Variation; Genome, Microbial; Genomics; Models, Genetic; Phylogeny; Streptomyces / genetics
Source: ORCID
Added: September 18, 2022

2016 journal article

A Latitudinal Diversity Gradient in Terrestrial Bacteria of the Genus Streptomyces

MBio, 7(2), e02200–15.

By: C. Andam, J. Doroghazi, A. Campbell, P. Kelly, M. Choudoir & D. Buckley

Source: ORCID
Added: September 18, 2022

2016 journal article

Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages

The ISME Journal.

By: C. Andam, M. Choudoir, A. Nguyen, H. Park & D. Buckley

Source: ORCID
Added: September 18, 2022

2016 journal article

Latitude delineates patterns of biogeography in terrestrial Streptomyces

Environmental Microbiology, 18, 4931–4945.

By: M. Choudoir*, B. Doroghazi* & D.H.

co-author countries: United States of America 🇺🇸
MeSH headings : Biodiversity; Biological Evolution; Ecosystem; Gene Flow / genetics; Genetics, Population; Genome, Bacterial / genetics; Multilocus Sequence Typing; Phylogeography; Soil; Streptomyces / classification; Streptomyces / genetics
Source: ORCID
Added: September 18, 2022

2012 journal article

Grappling with Proteus: population level approaches to understanding microbial diversity

Frontiers in Microbiology, 3, 336.

By: M. Choudoir, A. Campbell & D. Buckley

Source: ORCID
Added: September 18, 2022

2010 journal article

Sequence diversity of genes encoding botulinum neurotoxin type F

Applied and Environmental Microbiology, 76(14), 4805–4812.

By: B. Raphael, M. Choudoir, C. Lúquez, R. Fernández & S. Maslanka

Source: ORCID
Added: September 18, 2022

2009 journal article

Correlation between transcript abundance of the RB gene and the level of the RB-mediated late blight resistance in potato

Molecular Plant-Microbe Interactions, 22(4), 447–455.

By: L. Kramer, M. Choudoir, S. Wielgus, P. Bhaskar & J. Jiang

Source: ORCID
Added: September 18, 2022

Employment

Updated: September 18th, 2022 17:02

2022 - present

North Carolina State University Raleigh, Raleigh, US
Assistant Professor and Extension Specialist Plant and Microbial Biology

2020 - 2022

University of Massachusetts MA, MA, US
Department of Microbiology

2016 - 2018

University of Colorado Boulder Boulder, CO, US
CIRES