Matt Koci

Parzygnat, J. L., Dunn, R. R., Koci, M. D., Crespo, R., Harden, L., & Thakur, S. (2024). Fluoroquinolone-resistant Campylobacter in backyard and commercial broiler production systems in the United States. JAC-ANTIMICROBIAL RESISTANCE, 6(4). https://doi.org/10.1093/jacamr/dlae102

Fu, Y., Wang, Q., Guo, Y., Koci, M., Lu, Z., Zeng, X., … Zhao, L. (2024). Pleurotus eryngii polysaccharides alleviate aflatoxin B 1-induced liver inflammation in ducks involving in remodeling gut microbiota and regulating SCFAs transport via the gut-liver axis. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 271. https://doi.org/10.1016/j.ijbiomac.2024.132371

Wang, Y., Wang, Q., Wang, G., Zhang, Q., Guo, Y., Su, X., … Zhao, L. (2024). Rutin, a natural flavonoid glycoside, ameliorates zearalenone induced liver inflammation via inhibiting lipopolysaccharide gut leakage and NF-κB signaling pathway in mice. FOOD AND CHEMICAL TOXICOLOGY, 191. https://doi.org/10.1016/j.fct.2024.114887

Parzygnat, J. L., Crespo, R., Koci, M. D., Dunn, R. R., Harden, L., Fosnaught, M., & Thakur, S. (2024). Widespread prevalence of plasmid-mediated <i>bla</i><sub>CTX-M</sub> type extended-spectrum beta-lactamase <i>Escherichia coli</i> in backyard broiler production systems in the United States. PLOS ONE, 19(6). https://doi.org/10.1371/journal.pone.0304599

Koci, M. (2023, August 4). Beyond Better Medicines. https://doi.org/10.52750/677629

Wang, Q., Liu, T., Koci, M., Wang, Y., Fu, Y., Ma, M., … Zhao, L. (2023). Chlorogenic Acid Alleviated AFB1-Induced Hepatotoxicity by Regulating Mitochondrial Function, Activating Nrf2/HO-1, and Inhibiting Noncanonical NF-κB Signaling Pathway. ANTIOXIDANTS, 12(12). https://doi.org/10.3390/antiox12122027

Zhang, L., Wei, X., Wang, Z., Liu, P., Hou, Y., Xu, Y., … Zhang, C. (2023). NF-KB activation enhances STING signaling by altering microtubule-mediated STING trafficking. CELL REPORTS, 42(3). https://doi.org/10.1016/j.celrep.2023.112185

Swords, C. M., Porter, J. S., Hawkins, A. J., Li, E., Rowland-Goldsmith, M., Koci, M. D., … Woitowich, N. C. (2023, July 17). Science Communication Training Imparts Confidence and Influences Public Engagement Activity (L. Brancaccio-Taras, Ed.). JOURNAL OF MICROBIOLOGY & BIOLOGY EDUCATION, Vol. 7. https://doi.org/10.1128/jmbe.00037-23

Koci, M. (2022, June 22). COVID-19: The Beginning of The Beginning. https://doi.org/10.52750/209905

Wei, X., Zhang, L., Yang, Y., Hou, Y., Xu, Y., Wang, Z., … Zhang, C. (2022). LL-37 transports immunoreactive cGAMP to activate STING signaling and enhance interferon-mediated host antiviral immunity. CELL REPORTS, 39(9). https://doi.org/10.1016/j.celrep.2022.110880

Koci, M. (2022, June 22). Viruses: The Most Abundant Thing You’ve Never Seen. https://doi.org/10.52750/205120

Zhang, L., Wei, X., Zhang, R., Koci, M., Si, D., Ahmad, B., … Hou, Y. (2021). C-Terminal Amination of a Cationic Anti-Inflammatory Peptide Improves Bioavailability and Inhibitory Activity Against LPS-Induced Inflammation. FRONTIERS IN IMMUNOLOGY, 11. https://doi.org/10.3389/fimmu.2020.618312

Wei, X., Zhang, L., Zhang, R., Koci, M., Si, D., Ahmad, B., … Zhang, M. (2020). A Novel Cecropin-LL37 Hybrid Peptide Protects Mice Against EHEC Infection-Mediated Changes in Gut Microbiota, Intestinal Inflammation, and Impairment of Mucosal Barrier Functions. FRONTIERS IN IMMUNOLOGY, 11. https://doi.org/10.3389/fimmu.2020.01361

Troxell, B., Mendoza, M., Ali, R., Koci, M., & Hassan, H. (2020). Attenuated Salmonella enterica Serovar Typhimurium, Strain NC983, Is Immunogenic, and Protective against Virulent Typhimurium Challenges in Mice. VACCINES, 8(4). https://doi.org/10.3390/vaccines8040646

Hassan, H. M., Mendoza, M., Rezvani, M., Koci, M. D., Dickey, A. N., & Scholl, E. H. (2020). Complete Genome Sequences of Lactobacillus Strains C25 and P38, Isolated from Chicken Cecum. Microbiology Resource Announcements, 9(39). https://doi.org/10.1128/MRA.00501-20

Koci, M., Ballou, A., Wei, X., Zhang, L., Liew, Z., & Ali, R. (2020, April). Connecting the microbiome to host metabolites: understanding how the microbiome controls immune activity in birds. FASEB JOURNAL, Vol. 34. https://doi.org/10.1096/fasebj.2020.34.s1.00747

Zhang, L., Wei, X., Zhang, R., Koci, M., Si, D., Ahmad, B., … Wang, J. (2019). Development of a Highly Efficient Hybrid Peptide That Increases Immunomodulatory Activity Via the TLR4-Mediated Nuclear Factor-κB Signaling Pathway. International Journal of Molecular Sciences. https://doi.org/10.3390/ijms20246161

Allali, I., Arnold, J. W., Roach, J., Cadenas, M. B., Butz, N., Hassan, H. M., … Azcarate-Peril, M. A. (2017). A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome. BMC MICROBIOLOGY, 17. https://doi.org/10.1186/s12866-017-1101-8

Azcarate-Peril, M. A., Butz, N., Cadenas, M. B., Koci, M., Ballou, A., Mendoza, M., … Hassan, H. (2017). An Attenuated
                    Salmonella enterica
                    Serovar Typhimurium Strain and Galacto-Oligosaccharides Accelerate Clearance of
                    Salmonella
                    Infections in Poultry through Modifications to the Gut Microbiome. Applied and Environmental Microbiology, 84(5). https://doi.org/10.1128/aem.02526-17

Astrovirus. (2017). In Food Microbiology Series: Laboratory Models for Foodborne Infections.

Efficacy of Feed Additives to Reduce the Effect of Naturally Occurring Mycotoxins Fed to Turkey Hen Poults Reared to 6 Weeks of Age. (2017). Poult. Sci. https://doi.org/10.3382/ps/pex214

Hughes, R.-A., Ali, R. A., Mendoza, M. A., Hassan, H. M., & Koci, M. D. (2017). Impact of Dietary Galacto-Oligosaccharide (GOS) on Chicken’s Gut Microbiota, Mucosal Gene Expression, and Salmonella Colonization. Frontiers in Veterinary Science, 4. https://doi.org/10.3389/fvets.2017.00192

Ballou, A. L., Ali, R. A., Mendoza, M. A., Ellis, J. C., Hassan, H. M., Croom, W. J., & Koci, M. D. (2016). Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity. Frontiers in Veterinary Science, 3. https://doi.org/10.3389/fvets.2016.00002

Rezvani, M., Mendoza, M., Koci, M. D., Daron, C., Levy, J., & Hassan, H. M. (2016). Draft Genome Sequence of Lactobacillus crispatus C25 Isolated from Chicken Cecum. Genome Announcements, 4(6). https://doi.org/10.1128/genomeA.01223-16

Rezvani, M., Mendoza, M., Koci, M. D., Daron, C., Levy, J., & Hassan, H. M. (2016). Draft Genome Sequences of Lactobacillus animalis Strain P38 and Lactobacillus reuteri Strain P43 Isolated from Chicken Cecum. Genome Announcements, 4(6). https://doi.org/10.1128/genomeA.01229-16

Meliopoulos, V. A., Marvin, S. A., Freiden, P., Moser, L. A., Nighot, P., Ali, R., … Schultz-Cherry, S. (2016). Oral Administration of Astrovirus Capsid Protein Is Sufficient To Induce Acute Diarrhea
                    In Vivo. MBio, 7(6). https://doi.org/10.1128/mBio.01494-16

Troxell, B., Petri, N., Daron, C., Pereira, R., Mendoza, M., Hassan, H. M., & Koci, M. D. (2015). Poultry Body Temperature Contributes to Invasion Control through Reduced Expression of Salmonella Pathogenicity Island 1 Genes in Salmonella enterica Serovars Typhimurium and Enteritidis. Applied and Environmental Microbiology, 81(23), 8192–8201. https://doi.org/10.1128/aem.02622-15

Fulton, J. E., Arango, J., Ali, R. A., Bohorquez, E. B., Lund, A. R., Ashwell, C. M., … Koci, M. D. (2014). Genetic Variation within the Mx Gene of Commercially Selected Chicken Lines Reveals Multiple Haplotypes, Recombination and a Protein under Selection Pressure. PLoS ONE, 9(9), e108054. https://doi.org/10.1371/journal.pone.0108054

Sample, C. J., Hudak, K. E., Barefoot, B. E., Koci, M. D., Wanyonyi, M. S., Abraham, S., … Ramsburg, E. A. (2013). A mastoparan-derived peptide has broad-spectrum antiviral activity against enveloped viruses. PEPTIDES, 48, 96–105. https://doi.org/10.1016/j.peptides.2013.07.014

Oviedo-Rondon, E. O., Leandro, N. M., Ali, R., Koci, M., Moraes, V., & Brake, J. (2013). Broiler breeder feeding programs and trace minerals on maternal antibody transfer and broiler humoral immune response1. The Journal of Applied Poultry Research, 22(3), 499–510. https://doi.org/10.3382/japr.2012-00708

Krishna, N. K., Koci, M. D., & Guix, S. (2013). Astrovirus Immunity. In Astrovirus Research: Essential Ideas, Everyday Impacts, Future Directions (Vol. 9781461447351, pp. 79–95). https://doi.org/10.1007/978-1-4614-4735-1_5

Pantin-Jackwood, M., Todd, D., & Koci, M. D. (2013). Avian Astroviruses. In Astrovirus Research: Essential Ideas, Everyday Impacts, Future Directions (Vol. 9781461447351, pp. 151–180). https://doi.org/10.1007/978-1-4614-4735-1_9

Meyerhoff, R. R., Ali, R. A., Liu, K., Huang, G.-Q., & Koci, M. D. (2012). Comprehensive analysis of commercially available mouse antichicken monoclonal antibodies for cross-reactivity with peripheral blood leukocytes from commercial turkeys. POULTRY SCIENCE, 91(2), 383–392. https://doi.org/10.3382/ps.2011-01846

Meyerhoff, R. R., Ali, R. A., Liu, K., Huang, G.-Q., & Koci, M. D. (2012, April 1). Comprehensive analysis of commercially available mouse antichicken monoclonal antibodies for cross-reactivity with peripheral blood leukocytes from commercial turkeys (vol 91, pg 383, 2012). POULTRY SCIENCE, Vol. 91, pp. 1043–1043. https://doi.org/10.3382/ps.2012-91-4-1043

Qiu, R., Croom, J., Ali, R. A., Ballou, A. L., Smith, C. D., Ashwell, C. M., … Koci, M. D. (2012). Direct fed microbial supplementation repartitions host energy to the immune system. JOURNAL OF ANIMAL SCIENCE, 90(8), 2639–2651. https://doi.org/10.2527/jas.2011-4611

Schultz-Cherry, S. L., & Koci, M. (2011). Avastrovirus, Astroviridae. In The Springer Index of Viruses. 2nd Edition (pp. 89–95). https://doi.org/10.1007/978-0-387-95919-1_10

Meyerhoff, R. R., Nighot, P. K., Ali, R. A., Blikslager, A. T., & Koci, M. D. (2012). Characterization of turkey inducible nitric oxide synthase and identification of its expression in the intestinal epithelium following astrovirus infection. Comparative Immunology, Microbiology and Infectious Diseases, 35(1), 63–69. https://doi.org/10.1016/j.cimid.2011.10.002

Leandro, N. M., Ali, R., Koci, M., Moraes, V., Malheiros, R. D., Wineland, M. J., & Oviedo-Rondon, E. O. (2011). Effects of broiler breeder genetic, diet type, and feeding program on maternal antibody transfer and development of lymphoid tissues in chicken progeny. The Journal of Applied Poultry Research, 20(4), 474–484. https://doi.org/10.3382/japr.2010-00268

Leandro, N. M., Ali, R., Koci, M., Moraes, V., Eusebio-Balcazar, P. E., Jornigan, J., … Oviedo-Rondón, E. O. (2011). Maternal antibody transfer to broiler progeny varies among strains and is affected by grain source and cage density. Poultry Science, 90(12), 2730–2739. https://doi.org/10.3382/ps.2011-01573

Nighot, P. K., Moeser, A., Ali, R. A., Blikslager, A. T., & Koci, M. D. (2010). Astrovirus infection induces sodium malabsorption and redistributes sodium hydrogen exchanger expression. Virology, 401(2), 146–154. https://doi.org/10.1016/j.virol.2010.02.004

Grimes, J. L., Koci, M. D., Stark, C. R., Smith, D. P., Nighot, P. K., & Middleton, T. (2010). Biological Effect of Naturally Occurring Mycotoxins Fed to Poults Reared to 21 Days of Age. International J. of Poultry Science, 9(9), 871–874. https://doi.org/10.3923/ijps.2010.871.874

Croom, J., Chichlowski, M., Froetschel, M., McBride, B. W., Qui, R., & Koci, M. D. (2009). The effects of direct-fed microbial, primalac®, or salinomycin supplementation on intestinal lactate isomers and cecal volatile fatty acid concentrations in broilers. International Journal of Poultry Science, 8(2), 128–132. https://doi.org/10.3923/ijps.2009.128.132

Oviedo-Rondon, E. O., Small, J., Wineland, M. J., Christensen, V. L., Mozdziak, P. S., Koci, M. D., … Mann, K. M. (2008). Broiler embryo bone development is influenced by incubator temperature, oxygen concentration and eggshell conductance at the plateau stage in oxygen consumption. BRITISH POULTRY SCIENCE, 49(6), 666–676. https://doi.org/10.1080/00071660802433149

Chichlowski, M., Croom, J., Qui, R., McBride, B. W., & Koci, M. D. (2008). Direct fed microbial, Primalac®, supplementation and jejunal glucose and proline transport in broiler chickens. International Journal of Poultry Science, 7(12), 1163–1166. https://doi.org/10.3923/ijps.2008.1163.1166

Strain, E., Kelley, L. A., Schultz-Cherry, S., Muse, S. V., & Koci, M. D. (2008). Genomic analysis of closely related astroviruses. JOURNAL OF VIROLOGY, 82(10), 5099–5103. https://doi.org/10.1128/JVI.01993-07

Nighot, P. K., Koci, M. D., Moeser, A. J., Ali, R., & Blikslager, A. T. (2008). W1268 Mechanism of Astrovirus Induced Diarrhea. Gastroenterology, 134(4), A-668. https://doi.org/10.1016/s0016-5085(08)63119-4

Chichlowski, M., Croom, J., McBride, B. W., Daniel, L., Davis, G., & Koci, M. D. (2007). Direct-fed microbial PrimaLac and salinomycin modulate whole-body and intestinal oxygen consumption and intestinal mucosal cytokine production in the broiler chick. POULTRY SCIENCE, 86(6), 1100–1106. https://doi.org/10.1093/ps/86.6.1100

Chichlowski, M., Croom, J., McBride, B. W., Havenstein, G. B., & Koci, M. D. (2007). Metabolic and physiological impact of probiotics or direct-fed-microbials on poultry: A brief review of current knowledge. International Journal of Poultry Science, 6(10), 694–704. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-36048940317&partnerID=MN8TOARS

Chichlowski, M., Croom, W. J., Edens, F. W., McBride, B. W., Qiu, R., Chiang, C. C., … Koci, M. D. (2007). Microarchitecture and spatial relationship between bacteria and ileal, cecal, and colonic epithelium in chicks fed a direct-fed microbial, PrimaLac, and salinomycin. POULTRY SCIENCE, 86(6), 1121–1132. https://doi.org/10.1093/ps/86.6.1121

Effect of genotype on whole-body and intestinal metabolic response to monensin in mice. (2006). Asian-Australasian Journal of Animal Sciences, 19(4), 554–562. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33645764643&partnerID=MN8TOARS

Koci, M. D. (2005). [Review of Immunity and resistance to astrovirus infection]. VIRAL IMMUNOLOGY, 18(1), 11–16. https://doi.org/10.1089/vim.2005.18.11

Koci, M. D., Kelley, L. A., Larsen, D., & Schultz-Cherry, S. (2004). Astrovirus-Induced Synthesis of Nitric Oxide Contributes to Virus Control during Infection. Journal of Virology, 78(3), 1564–1574. https://doi.org/10.1128/JVI.78.3.1564-1574.2004

Sellers, H. S., Koci, M. D., Linnemann, E., Kelley, L. A., & Schultz-Cherry, S. (2004). Development of a Multiplex Reverse Transcription–Polymerase Chain Reaction Diagnostic Test Specific for Turkey Astrovirus and Coronavirus. Avian Diseases, 48(3), 531–538. https://doi.org/10.1637/7128

Koci, M. D., Moser, L. A., Kelley, L. A., Larsen, D., Brown, C. C., & Schultz-Cherry, S. (2003). Astrovirus Induces Diarrhea in the Absence of Inflammation and Cell Death. Journal of Virology, 77(21), 11798–11808. https://doi.org/10.1128/JVI.77.21.11798-11808.2003

Schultz-Cherry, S., Koci, M., Thompson, E., & Tumpey, T. M. (2003). Examining the cellular pathways involved in influenza virus induced apoptosis. Avian Diseases, 47(SPEC. ISS.), 968–971. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-0141677673&partnerID=MN8TOARS

Koci, M. D., & Schultz-Cherry, S. (2002). Avian astroviruses. Avian Pathology, 31(3), 213–227. https://doi.org/10.1080/03079450220136521

Behling-Kelly, E., Schultz-Cherry, S., Koci, M., Kelley, L., Larsen, D., & Brown, C. (2002). Localization of astrovirus in experimentally infected turkeys as determined by in situ hybridization. Veterinary Pathology, 39(5), 595–598. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-0036728382&partnerID=MN8TOARS

Schultz-Cherry, S., King, D. J., & Koci, M. D. (2001). Inactivation of an Astrovirus Associated with Poult Enteritis Mortality Syndrome. Avian Diseases, 45(1), 76. https://doi.org/10.2307/1593014

Koci, M. D., Seal, B. S., & Schultz-Cherry, S. (2000). Development of an RT-PCR diagnostic test for an avian astrovirus. Journal of Virological Methods, 90(1), 79–83. https://doi.org/10.1016/s0166-0934(00)00228-7

Schultz-Cherry, S., Kapczynski, D. R., Simmons, V. M., Koci, M. D., Brown, C., & Barnes, H. J. (2000). Identifying agent(s) associated. with poult enteritis mortality syndrome: Importance of the thymus. AVIAN DISEASES, 44(2), 256–265. https://doi.org/10.2307/1592538

Koci, M. D., Seal, B. S., & Schultz-Cherry, S. (2000). Molecular characterization of an avian astrovirus. Journal of Virology, 74(13), 6173–6177. https://doi.org/10.1128/JVI.74.13.6173-6177.2000

Mullins, D. W., Koci, M. D., Burger, C. J., & Elgert, K. D. (1998). Interleukin-12 Overcomes Paclitaxel-Mediated Suppression of T-Cell Proliferation. Immunopharmacology and Immunotoxicology, 20(4), 473–492. https://doi.org/10.3109/08923979809031511

Salmonella-attenuated strain and galacto-oligosaccharides accelerate clearance of Salmonella infections in poultry through modifications to the gut microbiome. . Retrieved from https://www.ncbi.nlm.nih.gov/pubmed/29269490