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Works (62)
Updated: April 5th, 2024 08:53
2024 journal article
Exploring shelf-life predictability of appearance traits and fruit texture in blueberry
POSTHARVEST BIOLOGY AND TECHNOLOGY, 208.
author keywords: Blueberry; Shelf-life; Prediction; Weight loss; Fruit quality; Mechanical texture
Source: Web Of Science
Added: December 18, 2023
2024 article
Genotype and ripening method affect carotenoid content and bio-accessibility in banana
Munoz, B., Hayes, M., Perkins-Veazie, P., Gillitt, N., Munoz, M., Kay, C. D., … Iorizzo, M. (2024, March 4). FOOD & FUNCTION, Vol. 3.
pubs.rsc.org (publisher PDF)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: March 8, 2024
2024 article
Would consumers accept CRISPR fruit crops if the benefit has health implications? An application to cranberry products
Ma, X., Gallardo, R. K., Canales, E., Atucha, A., Zalapa, J., & Iorizzo, M. (2024, January 8). AGRICULTURAL AND RESOURCE ECONOMICS REVIEW.
author keywords: CRISPR; processed fruits; consumer acceptance; health and nutrition; Q13; Q16
Source: Web Of Science
Added: January 29, 2024
2023 journal article
A Survey of Key Methods, Traits, Parameters, and Conditions for Measuring Texture in Cranberry (Vaccinium macrocarpon Ait.)
HORTICULTURAE, 9(4).
author keywords: cranberry; fruit quality; texture analysis; fruit phenotyping
Source: Web Of Science
Added: May 15, 2023
2023 journal article
Blueberry Cell Wall Polysaccharide Composition of Three Distinct Fruit Firmness Phenotypes
ACS FOOD SCIENCE & TECHNOLOGY, 3(11), 1920–1930.
author keywords: Vaccinium corymbosum; peel; pulp; cell wall; neutral sugar; linkage assembly; polysaccharide
Source: Web Of Science
Added: January 22, 2024
2023 journal article
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
HORTICULTURE RESEARCH, 10(11).
TL;DR:
The construction and analysis of the first pangenome for both blueberry and cranberry revealed both crops exhibit great genetic diversity, and the discovery of thousands of genes, not present in the previous reference genomes, will serve as the basis of future research and as potential targets for future breeding efforts.
(via Semantic Scholar)
Source: Web Of Science
Added: February 19, 2024
2023 journal article
Characterization of Purple Carrot Germplasm for Antioxidant Capacity and Root Concentration of Anthocyanins, Phenolics, and Carotenoids
PLANTS-BASEL, 12(9).
author keywords: Daucus carota; anthocyanins; phenolic compounds; carotenoids; antioxidant capacity
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: June 26, 2023
2023 journal article
Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple
SCIENTIFIC REPORTS, 13(1).
Sources: Web Of Science, NC State University Libraries
Added: February 26, 2024
2023 journal article
Functional characterization of DcMYB11, an R2R3 MYB associated with the purple pigmentation of carrot petiole
PLANTA, 258(3).
author keywords: Anthocyanins; Carrot petiole; Daucus carota; Regulatory sequences; Transcription factor
TL;DR:
This study provides novel insight into the molecular mechanisms controlling anthocyanin accumulation in carrot and expanded the knowledge on the cis-regulatory sequences in plants by identifying three different alleles which may explain differences in petiole pigmentation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 14, 2023
2023 journal article
Identification of bromelain subfamily proteases encoded in the pineapple genome
SCIENTIFIC REPORTS, 13(1).
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 21, 2023
2023 article
Interdisciplinary approaches to improve quality of soft fruit berries, volume II
Farneti, B., Giongo, L., Emanuelli, F., Toivonen, P., Folta, K., & Iorizzo, M. (2023, December 7). FRONTIERS IN PLANT SCIENCE, Vol. 14.
author keywords: quality; breeding; omics analyses; Vaccinium spp.; Rubus spp.; postharvest; nutraceutical
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: Web Of Science
Added: January 8, 2024
2023 article
Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots
Coe, K., Bostan, H., Rolling, W., Turner-Hissong, S., Macko-Podgorni, A., Senalik, D., … Iorizzo, M. (2023, September 28). NATURE PLANTS, Vol. 9.
TL;DR:
It is demonstrated that carrot was domesticated during the Early Middle Ages in the region spanning western Asia to central Asia, and orange carrot was selected during the Renaissance period, probably in western Europe, through the selection of three recessive genes that increased the provitamin A carotenoid (α- and β-carotene) content.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: October 16, 2023
2023 journal article
Trait Mapping of Phenolic Acids in an Interspecific (Vaccinium corymbosum var. caesariense x V. darrowii) Diploid Blueberry Population
PLANTS-BASEL, 12(6).
author keywords: blueberry; trait mapping; chlorogenic acids; candidate genes; fruit quality; nutrition
TL;DR:
Blueberries (Vaccinium sect. Cyanococcus) are a dietary source of phenolic acids, including chlorogenic acid (CGA) and related compounds such as acetylated caffeoylquinic acid (ACQA) and caffeoylarbutin (CA), and loci for the compounds clustered on the proximal arm of Vc02, suggesting that a single gene or several closely associated genes are responsible for the biosynthesis of all four tested compounds.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: April 17, 2023
2023 article
Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit
Albert, N. W., Iorizzo, M., Mengist, M. F., Montanari, S., Zalapa, J., Maule, A., … Espley, R. V. (2023, May 2). PLANT PHYSIOLOGY.
TL;DR:
The recent progress in understanding flavonoid regulation in fruit crops is considered, using Vaccinium as an example and highlighting the significant gains in both genomic tools and functional analysis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: June 5, 2023
2022 article
Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum)
Mengist, M. F., Bostan, H., De Paola, D., Teresi, S. J., Platts, A. E., Cremona, G., … Iorizzo, M. (2022, September 3). NEW PHYTOLOGIST, Vol. 9.
author keywords: autopolyploid; blueberry (Vaccinium corymbosum L; ); centromeric repeat; chromosomal translocation; chromosome structure; phased genome; polyploid genetic behavior
MeSH headings : Tetraploidy; Blueberry Plants / genetics; Inheritance Patterns; Polyploidy; Chromosomes
TL;DR:
A new high‐quality, phased, chromosome‐scale genome of a diploid blueberry, clone W85 is described, which will facilitate new genetic and comparative genomic studies in Vaccinium and the development of genomic assisted selection strategy for this crop.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: September 4, 2022
2022 article
Bioaccessibility and intestinal cell uptake of carotenoids and chlorophylls differ in powdered spinach by the ingredient form as measured using in vitro gastrointestinal digestion and anaerobic fecal fermentation models
Hayes, M., Mohamedshah, Z., Chadwick-Corbin, S., Hoskin, R., Iorizzo, M., Lila, M. A., … Ferruzzi, M. G. (2022, March 8). FOOD & FUNCTION, Vol. 13.
MeSH headings : Anaerobiosis; Caco-2 Cells; Carotenoids / metabolism; Chlorophyll; Digestion; Fermentation; Health Promotion; Humans; Powders; Spinacia oleracea / metabolism
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: March 31, 2022
2022 article
Boosting the Bioaccessibility of Dietary Bioactives by Delivery as Protein-Polyphenol Aggregate Particles
Lila, M. A., Hoskin, R. T., Grace, M. H., Xiong, J., Strauch, R., Ferruzzi, M., … Kay, C. (2022, April 8). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, Vol. 4.
author keywords: bioavailability; digestion; absorption; circulation; uptake; matrix
MeSH headings : Humans; Polyphenols / analysis; Fruit / chemistry; Protein Aggregates; Dietary Proteins; Biological Availability; Food Ingredients
TL;DR:
Evidence to date suggests that complexation of phy toactive polyphenolics effectively enhances their health-relevant impacts, specifically because the phytoactives are protected in the protein matrix during transit in the GIT, allowing intact, non-degraded molecules to reach the colon for catabolism at the gut microbiome level.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 14, 2022
2022 journal article
CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota)
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2022.
MeSH headings : Databases, Genetic; Daucus carota / genetics; Genome, Plant / genetics; Genomics; Plant Breeding
TL;DR:
CarrotOmics is a timely resource for the Apiaceae research community and for carrot geneticists developing improved cultivars with novel traits addressing challenges including an expanding acreage in tropical climates, an evolving consumer interested in sustainably grown vegetables and a dynamic environment due to climate change.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: September 19, 2022
2022 journal article
Comparative multi-parameters approach to dissect texture subcomponents of highbush blueberry cultivars at harvest and postharvest
POSTHARVEST BIOLOGY AND TECHNOLOGY, 183.
author keywords: Blueberry; Fruit quality; Post-harvest; Shelf life storage; Texture; Texture analysis; Texture profile analysis; Vaccinium
Source: Web Of Science
Added: October 26, 2021
2022 journal article
Dissecting the genetic basis of bioactive metabolites and fruit quality traits in blueberries (Vaccinium corymbosum L.)
FRONTIERS IN PLANT SCIENCE, 13.
author keywords: blueberry; anthocyanin; acylation; glycosylation; QTL mapping; candidate genes; fruit quality; chlorogenic acid
TL;DR:
The study provides the first insights into the genetic basis controlling anthocyanins accumulation and composition, chlorogenic acid and fruit quality traits, and establishes a framework to advance genetic studies and molecular breeding for anthcyanins in blueberry.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: September 26, 2022
2022 journal article
Improved High-Quality Genome Assembly and Annotation of Pineapple (Ananas comosus) Cultivar MD2 Revealed Extensive Haplotype Diversity and Diversified FRS/FRF Gene Family
GENES, 13(1).
author keywords: pineapple MD2; Ananas comosus; improved assembly; haplotype diversity; FHY3; FAR1 genes; FRS; FRF genes
MeSH headings : Ananas / genetics; Ananas / growth & development; Chromosome Mapping; Chromosomes, Plant / genetics; Gene Expression Regulation, Plant; Genetic Variation; Genome, Plant; Genomics; Haplotypes; Molecular Sequence Annotation / methods; Plant Proteins / genetics; Sequence Analysis, DNA
TL;DR:
The new MD2 assembly will serve as a new reference for genetic and genomic studies in pineapple, and over 48% of the predicted genes harbored potential deleterious mutations, indicating that the high level of heterozygosity in this species contributes to maintaining functional alleles.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: December 27, 2021
2022 journal article
Physicochemical properties, degradation kinetics, and antioxidant capacity of aqueous anthocyanin-based extracts from purple carrots compared to synthetic and natural food colorants
FOOD CHEMISTRY, 387.
author keywords: Natural pigments; Anthocyanins; Physical -chemical stability; Degradation kinetics; pH; Temperature
MeSH headings : Anthocyanins / chemistry; Antioxidants / metabolism; Color; Daucus carota / chemistry; Food Coloring Agents / chemistry; Kinetics; Phenols / metabolism; Plant Extracts / chemistry
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: May 31, 2022
2022 journal article
Spray-dried and freeze-dried protein-spinach particles; effect of drying technique and protein type on the bioaccessibility of carotenoids, chlorophylls, and phenolics
FOOD CHEMISTRY, 388.
author keywords: Spinach phytochemicals; Whey protein; Soy protein; Drying; In vitro digestion; Dried ingredients
MeSH headings : Carotenoids / metabolism; Chlorophyll / metabolism; Digestion; Excipients / metabolism; Flavonoids / metabolism; Freeze Drying; Phenols / metabolism; Spinacia oleracea / metabolism
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 13, 2022
2022 journal article
There and back again; historical perspective and future directions for Vaccinium breeding and research studies
HORTICULTURE RESEARCH, 9.
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 1, 2022
2021 journal article
Admixture Analysis Using Genotyping-by-Sequencing Reveals Genetic Relatedness and Parental Lineage Distribution in Highbush Blueberry Genotypes and Cross Derivatives
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(1).
author keywords: Vaccinium; admixture analysis; genotyping-by-sequencing; genetic relatedness
MeSH headings : Blueberry Plants / classification; Blueberry Plants / genetics; Blueberry Plants / growth & development; Cell Lineage; Gene Expression Regulation, Plant; Genetic Markers; Genotype; Haplotypes; Plant Breeding; Plant Proteins / genetics; Polymorphism, Single Nucleotide; Species Specificity; Transcriptome
TL;DR:
This study demonstrated the effectiveness of GBS-derived single-nucleotide polymorphism markers in genetic and admixture analyses to reveal genetic relatedness and to examine parental lineages in blueberry, which may be useful for future breeding plans.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: February 1, 2021
2021 article
An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids
Hulse-Kemp, A. M., Bostan, H., Chen, S., Ashrafi, H., Stoffel, K., Sanseverino, W., … Van Deynze, A. (2021, June 10). PLANT GENOME, Vol. 6.
MeSH headings : Chromosomes; Gene Rearrangement; Peronospora; Plant Breeding; Spinacia oleracea / genetics
TL;DR:
Diversity analysis of 75 lines indicate that variation in genes is ample for hypothesis‐driven, genomic‐assisted breeding enabled by this work, and Evolutionary analysis indicates that Spinacia is a paleohexaploid with a whole‐genome triplication followed by extensive gene rearrangements identified in this work.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 14, 2021
2021 journal article
Chromosome-Level Genome Assembly of the American Cranberry (Vaccinium macrocarpon Ait.) and Its Wild Relative Vaccinium microcarpum
FRONTIERS IN PLANT SCIENCE, 12.
author keywords: American cranberry; Vaccinium; genome duplication; genome evolution; anthocyanin biosynthesis
TL;DR:
The first chromosome-scale genome assembly of cranberry, cultivar Stevens, and a draft genome of its close wild relative species Vaccinium microcarpum is reported, revealing two polyploidization events, the ancient γ-triplication and a more recent whole genome duplication shared with other members of the Ericaeae, Theaceae and Actinidiaceae families approximately 61 Mya.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: March 15, 2021
2021 journal article
Genetic and Transcription Profile Analysis of Tissue-Specific Anthocyanin Pigmentation in Carrot Root Phloem
GENES, 12(10).
author keywords: Daucus carota; anthocyanin; phloem pigmentation; genetic mapping; RNA-Seq; candidate genes; RT-qPCR
MeSH headings : Anthocyanins / metabolism; Daucus carota / genetics; Daucus carota / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Phloem / metabolism; Pigments, Biological / metabolism; Plant Roots / metabolism; Real-Time Polymerase Chain Reaction
TL;DR:
The genetic control underlying tissue-specific anthocyanin pigmentation in the carrot root OP and IP tissues was investigated by means of linkage mapping and transcriptome and phylogenetic analyses; followed by gene expression evaluations in two genetic backgrounds, an F2 population (3242) and the inbred B7262.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: November 15, 2021
2021 journal article
High-Density Linkage Map Construction and QTL Identification in a Diploid Blueberry Mapping Population
FRONTIERS IN PLANT SCIENCE, 12.
author keywords: Vaccinium; genetic map; fruit quality; plant development; chilling requirement; cold hardiness
TL;DR:
The first high density bin map of a diploid blueberry mapping population is reported and several horticulturally important QTLs are identified for chilling requirement, cold hardiness, and fruit quality traits of color, scar size, and firmness.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: July 19, 2021
2021 journal article
High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry
HORTICULTURE RESEARCH, 8(1).
TL;DR:
The genetic basis of fruit quality traits in blueberry was dissected and an association between these fruit quality trait and metabolites detected by Proton nuclear magnetic resonance analysis was established.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 1, 2021
2020 review
Carrot Anthocyanins Genetics and Genomics: Status and Perspectives to Improve Its Application for the Food Colorant Industry
[Review of ]. GENES, 11(8).
author keywords: anthocyanins; carrots; natural colorant; genetics
MeSH headings : Anthocyanins / chemistry; Anthocyanins / metabolism; Biological Products / chemistry; Biological Products / metabolism; Chemical Phenomena; Daucus carota / classification; Daucus carota / genetics; Daucus carota / metabolism; Food Coloring Agents / chemistry; Food Coloring Agents / metabolism; Food Industry; Gene Expression Regulation, Plant; Genetic Association Studies; Genome, Plant; Genomics / methods; Pigmentation / genetics; Plant Proteins / genetics; Quantitative Trait, Heritable
TL;DR:
A view of the current knowledge gaps and advancement needs as regards developing and applying innovative molecular tools to improve the yield, product performance and stability of carrot anthocyanin for use as a natural food colorant is provided.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: November 2, 2020
2020 journal article
Development of a genetic framework to improve the efficiency of bioactive delivery from blueberry
SCIENTIFIC REPORTS, 10(1).
MeSH headings : Blueberry Plants / genetics; Blueberry Plants / metabolism; Digestion; Flavonoids / metabolism; Genotype; Hydroxybenzoates / metabolism; In Vitro Techniques
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: November 16, 2020
2020 article
Editorial: Interdisciplinary Approaches to Improve Quality of Soft Fruit Berries
Farneti, B., Emanuelli, F., Giongo, L., Toivonen, P., Iorizzo, M., Folta, K., & Finn, C. (2020, September 10). FRONTIERS IN PLANT SCIENCE, Vol. 11.
author keywords: quality; breeding; omics analyses; vaccinium; rubus; fragaria; postharvest; nutraceutical
TL;DR:
This paper presents a meta-analyses of the genome of Fruit Crop Department, Fondazione Edmund Mach, San Michele all’Adige, Italy, which shows clear patterns in the responses tonutrients and phytochemical excursions in fruit crops.
(via Semantic Scholar)
Source: Web Of Science
Added: October 19, 2020
2020 journal article
Identification of an SCPL Gene Controlling Anthocyanin Acylation in Carrot (Daucus carota L.) Root
FRONTIERS IN PLANT SCIENCE, 10.
author keywords: Daucus carota L; anthocyanins; acyltransferase; fine mapping; transcriptome; candidate genes
TL;DR:
Strong linkage-mapping and functional evidences are provided for the candidacy of DcSCPL1 as a primary regulator of anthocyanin acylation in carrot storage root.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 10, 2020
2019 journal article
A Cluster of MYB Transcription Factors Regulates Anthocyanin Biosynthesis in Carrot (Daucus carota L.) Root and Petiole
FRONTIERS IN PLANT SCIENCE, 9.
author keywords: Daucus carota L.; anthocyanin accumulation; root and petiole; regulation; fine mapping; transcriptome; candidate genes
TL;DR:
Fine mapping and functional evidence for the candidacy of six MYB transcription factors associated with the regulation of carrot anthocyanin biosynthesis are provided, suggesting DcMYB11 is a candidate gene for petiole pigmentation in all the purple carrot sources in this study.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: January 28, 2019
2019 article
Carrot Anthocyanin Diversity, Genetics, and Genomics
CARROT GENOME, pp. 261–277.
TL;DR:
Recent advances in high-throughput sequencing and bioinformatic analyses have facilitated the discovery of candidate regulatory genes for root and petiole pigmentation associated with the P3 region in chromosome 3, as well as structural genes involved in anthocyanin glycosylation and acylation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: October 28, 2019
2019 article
Carrot Carotenoid Genetics and Genomics
CARROT GENOME, pp. 247–260.
TL;DR:
The discovery of genes outside the carotenoid biosynthetic pathway that contributes to carOTenoid colors of carrots is but one exciting consequence of sequencing the carrot genome.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: October 28, 2019
2019 article
Carrot Genetics, Omics and Breeding Toolboxes
CARROT GENOME, pp. 225–245.
TL;DR:
This chapter summarizes the available omics, genetics and breeding resources for carrot and other Daucus species in different public and private databases and discusses the challenges for collecting, integrating and interpreting this data with a focus on the lack of dedicated, centralized and user-friendly bioinformatics platforms, breeding toolboxes and infrastructures for the carrot genome.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: October 28, 2019
2019 article
Carrot Molecular Genetics and Mapping
CARROT GENOME, pp. 101–117.
TL;DR:
Combined, these tools will advance the breeding process for carrot by enabling a targeted approach to improving traits by utilizing marker-assisted selection (MAS) strategies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: October 28, 2019
2019 article
Carrot Organelle Genomes: Organization, Diversity, and Inheritance
CARROT GENOME, pp. 205–223.
TL;DR:
This chapter summarizes organellar (plastids and mitochondria) structure, function, mutational rates, and inter-organelle DNA transfer in the Apiaceae and inheritance in the genus Daucus and places these data in the context of other studies in the angiosperms.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: October 28, 2019
2019 journal article
Dissecting the genetic control of root and leaf tissue-specific anthocyanin pigmentation in carrot (Daucus carota L.)
THEORETICAL AND APPLIED GENETICS, 132(9), 2485–2507.
MeSH headings : Anthocyanins / genetics; Anthocyanins / metabolism; Chromosomes, Plant; Color; Daucus carota / genetics; Daucus carota / growth & development; Daucus carota / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant; Phylogeny; Pigmentation / genetics; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptome
TL;DR:
Candidate genes conditioning pigmentation in the phloem, the main tissue influencing total anthocyanin levels in the root, are identified, contributing to the understanding of anthOCyanin regulation in the carrot root at a tissue-specific level and maybe instrumental for improving carrot nutritional value.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: September 30, 2019
2019 journal article
High-throughput genotyping in onion reveals structure of genetic diversity and informative SNPs useful for molecular breeding
Molecular Breeding, 39(1).
author keywords: Allium sp; KASP; SNPs; Population structure
TL;DR:
The data generated in this study allowed the survey of genetic variability in a heterogeneous and scantily examined germplasm, with repercussions on its exploitation in breeding programs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, Crossref
Added: April 20, 2020
2019 article
The Carrot Nuclear Genome and Comparative Analysis
CARROT GENOME, pp. 187–204.
TL;DR:
A description of the history of efforts made to characterize the carrot genome in the pre- and post-genomic era and the partners involved in the development of the high-quality carrot genome assembly are described.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: October 28, 2019
2019 journal article
Variation in anthocyanin profiles of 27 genotypes of red cabbage over two growing seasons
FOOD CHEMISTRY, 301.
author keywords: Red cabbage; Acylated anthocyanin; Breeding population; HPLC-DAD-MSE
MeSH headings : Acylation; Anthocyanins / analysis; Anthocyanins / chemistry; Brassica / chemistry; Brassica / genetics; Brassica / metabolism; Chromatography, High Pressure Liquid; Genotype; Mass Spectrometry; Plant Breeding; Polymorphism, Genetic; Seasons
TL;DR:
PCA analysis identified anthocyanin accumulation traits and genotypes with high diversity which can be utilized in future investigations into the genetic and molecular basis for anthochenin production, acylation, and diversity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: September 23, 2019
2017 journal article
Characterization of a Genomic Region under Selection in Cultivated Carrot (Daucus carota subsp sativus) Reveals a Candidate Domestication Gene
FRONTIERS IN PLANT SCIENCE, 8.
author keywords: AT-hook motif nuclear localized (AHL); domestication syndrome; genotyping-by-sequencing; linkage disequilibrium; single nucleotide polymorphism; storage root
TL;DR:
It is proposed that the ‘cultivated’ variant of DcAHLc1 has been selected from wild Central Asian carrot populations upon domestication and it is highly predominant in the western cultivated carrot gene pool.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Construction of a High-Density American Cranberry (Vaccinium macrocarpon Ait.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage Mapping
G3-GENES GENOMES GENETICS, 7(4), 1177–1189.
author keywords: centromere region; genetic map; simple sequence repeat; single nucleotide polymorphism; Vaccinium
MeSH headings : Centromere / genetics; Chromosome Mapping / methods; Chromosome Segregation / genetics; Genome, Plant; Genotype; Genotyping Techniques / methods; Microsatellite Repeats / genetics; Pedigree; Polymorphism, Single Nucleotide / genetics; Recombination, Genetic / genetics; Sequence Analysis, DNA; Statistics, Nonparametric; Vaccinium macrocarpon / genetics
TL;DR:
To increase the availability of cranberry genomic resources, genotyping-by-sequencing was used to discover and genotype thousands of single nucleotide polymorphisms (SNPs) within three interrelated cranberry full-sib populations, and higher rates of recombination were observed in maternal than paternal gametes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid(1)
AMERICAN JOURNAL OF BOTANY, 104(2), 296–312.
author keywords: Apiaceae; carrot; Daucus; DcMP; germplasm; mitochondria; next-generation sequencing; nuclear-to-plastid DNA transfer; plastid phylogeny
MeSH headings : Cell Nucleus / genetics; DNA, Chloroplast / genetics; DNA, Mitochondrial / genetics; DNA, Plant / chemistry; DNA, Plant / classification; DNA, Plant / genetics; Daucus carota / classification; Daucus carota / genetics; Genes, Plant / genetics; Genome, Mitochondrial / genetics; Genome, Plant / genetics; Genome, Plastid / genetics; Mutagenesis, Insertional; Phylogeny; Plant Proteins / genetics; Plastids / genetics; Sequence Analysis, DNA; Species Specificity
TL;DR:
A well-resolved plastid phylogeny of Daucus is produced and the first instance in flowering plants of a sequence of potential nuclear genome origin inserted into the plastID genome is identified.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Fine Mapping, Transcriptome Analysis, and Marker Development for Y-2, the Gene That Conditions beta-Carotene Accumulation in Carrot (Daucus carota L.)
G3-GENES GENOMES GENETICS, 7(8), 2665–2675.
author keywords: carotenoids; Daucus carota L.; genotyping-by-sequencing; RNA-sequencing; QTL
MeSH headings : Amino Acid Sequence; Chromosomes, Plant / genetics; Daucus carota / genetics; Gene Expression Profiling; Genes, Plant; Genetic Markers; Inheritance Patterns / genetics; Nucleotides / genetics; Phenotype; Physical Chromosome Mapping; Plant Roots / genetics; Quantitative Trait Loci / genetics; Sequence Analysis, DNA; Sequence Homology, Amino Acid; beta Carotene / metabolism
TL;DR:
The results presented in this study provide a foundation to identify and characterize the gene underlying β-carotene accumulation in carrot and identify transcription factors and genes involved in light signaling and carotenoid flux.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2016 journal article
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
NATURE GENETICS, 48(6), 657-+.
MeSH headings : Biological Evolution; Carotenoids / metabolism; Daucus carota / classification; Daucus carota / genetics; Daucus carota / metabolism; Genes, Regulator; Genetic Linkage; Genetic Markers; Genome, Plant; Phylogeny; Plant Roots / metabolism
TL;DR:
A high-quality chromosome-scale assembly and analysis of the carrot genome is reported, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade, and a candidate gene, DCAR_032551, is identified that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2016 journal article
Combined Use of Molecular Markers and High-Resolution Melting (HRM) to Assess Chromosome Dosage in Potato Hybrids
JOURNAL OF HEREDITY, 107(2), 187–192.
author keywords: COSII; haplotype; SNPs; Solanum commersonii; Solanum tuberosum
MeSH headings : Breeding; Chromosomes, Plant; DNA, Plant / genetics; Gene Dosage; Genetic Markers; Genome, Plant; Ploidies; Polymerase Chain Reaction; Polymorphism, Single Nucleotide; Solanum tuberosum / genetics
TL;DR:
The development of a molecular assay that uses single-copy conserved ortholog set II (COSII)-based single nucleotide polymorphisms (SNPs) and the high-resolution melting (HRM) technique to assess the chromosome dosage of interspecific hybrids and the ability of this strategy to distinguish diverged genomes from each other, and to estimate chromosome dosage is described.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2016 journal article
Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping
BMC GENOMICS, 17.
author keywords: Genotyping by sequencing; Imputation; Vaccinium macrocarpon; Pseudo-testcross; Linkage disequilibrium; Segregation distortion; Synteny
MeSH headings : Chromosome Mapping; Cluster Analysis; Genetic Linkage; Genome, Plant; Genomics / methods; Genotype; Linkage Disequilibrium; Microsatellite Repeats; Polymorphism, Single Nucleotide; Synteny; Vaccinium macrocarpon / genetics
TL;DR:
Collinearity between the present saturated genetic map and previous cranberry SSR maps suggests that the SNP locations represent accurate marker order and chromosome structure of the cranberry genome.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2016 journal article
Patterns of Gene Flow between Crop and Wild Carrot, Daucus carota (Apiaceae) in the United States
PLOS ONE, 11(9).
MeSH headings : Crops, Agricultural / genetics; DNA, Chloroplast / genetics; Daucus carota / genetics; Gene Flow; Gene Frequency; Genetic Variation; Genetics, Population; Microsatellite Repeats / genetics; Plants, Genetically Modified; Seeds / genetics; United States
TL;DR:
Analysis of patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in two regions of the United States finds substantial gene flow for both nuclear and chloroplast markers demonstrate the efficiency of both pollen and seed to transfer genetic information amongst populations of carrot.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Development of a high-density cranberry SSR linkage map for comparative genetic analysis and trait detection
MOLECULAR BREEDING, 35(8).
author keywords: Vaccinium macrocarpon; Linkage Map; SSR; QTL
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Meloidogyne incognita nematode resistance QTL in carrot
Molecular Breeding, 35(5).
author keywords: Carrot; Root-knot nematodes; QTL; Disease resistance; Daucus carota L.
Source: Crossref
Added: February 24, 2020
2014 journal article
Biochemical features of native red wines and genetic diversity of the corresponding grape varieties from Campania region
Food Chemistry, 143, 506–513.
author keywords: Polyphenols; Microsatellites markers; Cabernet Sauvignon and Merlot; Grape authentication; Campania wines traceability
MeSH headings : Genetic Variation; Italy; Microsatellite Repeats; Phenols / analysis; Plant Extracts / analysis; Vitis / chemistry; Vitis / classification; Vitis / genetics; Wine / analysis
TL;DR:
Principal component analysis applied to 72 wines based on the 18 biochemical parameters, explained 77.6% of the total variance and highlighted important biological entities providing insightful patterns, and comparison of SSR-based data with phenylpropanoid molecules exhibited a statistically significant correlation.
(via Semantic Scholar)
Source: Crossref
Added: August 28, 2020
2013 journal article
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers
Molecular Breeding, 33(3), 625–637.
author keywords: Carrot; DArT; Domestication; Diversity structure; Linkage mapping; Selection
TL;DR:
The results reported here provide background for further research on the history of carrot domestication and identify genomic regions potentially important for modern carrot breeding.
(via Semantic Scholar)
Source: Crossref
Added: January 5, 2021
2013 journal article
Expression and mapping of anthocyanin biosynthesis genes in carrot
Theoretical and Applied Genetics, 126(7), 1689–1702.
MeSH headings : Anthocyanins / biosynthesis; Anthocyanins / genetics; Biosynthetic Pathways / genetics; Chromosome Mapping; Color; Daucus carota / genetics; Gene Expression Profiling; Genes, Plant; Inbreeding; Phenotype; Phloem / metabolism; Pigments, Biological / chemistry; Plant Roots / genetics; Plant Roots / metabolism; Xylem / metabolism
TL;DR:
The gene expression and mapping data suggest a coordinated regulatory control of anthocyanin expression in carrot root and establish a framework for studying the anthcyanin pathway in carrots, and suggest that none of the genes evaluated is a candidate for P1.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: Crossref
Added: August 28, 2020
2012 journal article
Biological and geochemical markers of the geographical origin and genetic identity of potatoes
Journal of Geochemical Exploration, 121, 62–68.
author keywords: Traceability; DNA analysis; Trace elements; Strontium isotopic signature; Secondary metabolites; Discriminant analysis
Source: Crossref
Added: August 28, 2020
2012 journal article
Fertilization fitness and offspring ploidy in 3x × 2x matings in potato
Plant Biosystems - An International Journal Dealing with All Aspects of Plant Biology, 146(2), 317–321.
author keywords: Endosperm balance number; fertilization fitness; aneuploid; AFLP markers; potato
TL;DR:
Results indicated that fitness of gametes and chromosome number of progenies are influenced by the genome dosage of interspecific triploids, which may contribute to a better understanding of polyploid plant reproduction, evolution and breeding.
(via Semantic Scholar)
Source: Crossref
Added: August 28, 2020
2012 journal article
Molecular mapping of vernalization requirement and fertility restoration genes in carrot
Theoretical and Applied Genetics, 126(2), 415–423.
MeSH headings : Chromosome Mapping; Chromosomes, Plant; Daucus carota / genetics; Daucus carota / growth & development; Flowers / genetics; Flowers / growth & development; Genes, Plant; Genetic Linkage; Infertility / genetics; Infertility / prevention & control; Pollen / physiology; Random Amplified Polymorphic DNA Technique
TL;DR:
The objective of the present work was to develop the first linkage map of carrot locating the genomic regions that control vernalization response and fertility restoration, and to study traits important for carrot domestication and reproductive biology, as well as facilitating carrot breeding.
(via Semantic Scholar)
Source: Crossref
Added: January 5, 2021
2011 journal article
Disease resistance gene transcription in transgenic potato is unaltered by temperature extremes and plant physiological age
European Journal of Plant Pathology, 130(4), 469–476.
author keywords: Plant age; RB; R gene; Real time PCR; Transcript level
TL;DR:
This study analyzed the expression patterns of the Phytophthora infestans resistance gene RB in transgenic potato plants across a broad range of temperatures and key physiological stages to demonstrate that while temperature extremes have an obvious effect on plant morphology and development, RB is transcribed at all ages and temperatures in all genetic backgrounds.
(via Semantic Scholar)
Source: Crossref
Added: August 28, 2020
2009 journal article
Resistance to Ralstonia solanacearum of Sexual Hybrids Between Solanum commersonii and S. tuberosum
American Journal of Potato Research, 86(3), 196–202.
author keywords: Potato; Bacterial wilt; Resistance breeding; Gene introgression; AFLP analysis
TL;DR:
A molecular study with AFLP markers clustered hybrids into nine groups and provided evidence that resistant hybrids were slightly more similar to cultivated S. tuberosum than to the wild parent, important in view of the re-establishment of the cultivated genetic background through backcrosses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Source: Crossref
Added: August 28, 2020
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