Manuel Kleiner
https://orcid.org/0000-0001-6904-0287
Metaproteomics, Microbiome, Symbiosis, Metagenomics, Microbial Physiology, Carbon Fixation Pathways
Works (88)
Updated: September 7th, 2023 05:01
2023 journal article
De novo phytosterol synthesis in animals
SCIENCE, 380(6644), 520–526.
MeSH headings : Animals; Cholesterol / metabolism; Phylogeny; Plants / metabolism; Sitosterols / metabolism; Annelida / metabolism
doi.org (repository)
Sources: ORCID, Web Of Science
Added: May 5, 2023
2023 article
Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization
Parnell, J. J., Vintila, S., Tang, C., Wagner, M. R., & Kleiner, M. (2023, May 10).
Source: ORCID
Added: May 11, 2023
2023 article
Legacy effects of precipitation and land use impact maize growth and microbiome assembly under drought stress
Swift, J. F., Kolp, M. R., Carmichael, A., Ford, N. E., Hansen, P. M., Sikes, B. A., … Wagner, M. R. (2023, April 12).
Source: ORCID
Added: April 18, 2023
2023 article
Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels
Zvi-Kedem, T., Vintila, S., Kleiner, M., Tchernov, D., & Rubin-Blum, M. (2023, February 10).
Source: ORCID
Added: February 11, 2023
2023 journal article
Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels
ISME COMMUNICATIONS, 3(1).
Sources: Web Of Science, ORCID
Added: September 5, 2023
2023 article
Re-engineering a lost trait:IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss
Hornstein, E. D., Charles, M., Franklin, M., Edwards, B., Vintila, S., Kleiner, M., & Sederoff, H. (2023, March 7).
Source: ORCID
Added: March 8, 2023
2023 journal article
Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes
MICROBIOME, 11(1).
MeSH headings : Humans; Carbon Isotopes / analysis; Carbon Isotopes / metabolism; Chromatography, Liquid; Tandem Mass Spectrometry / methods; Microbiota; DNA Probes
Sources: Web Of Science, ORCID
Added: March 13, 2023
2022 journal article
Considerations for constructing a protein sequence database for metaproteomics
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952.
author keywords: Metaproteome; Metagenomics; Microbiome; Microbial community; Multi-omics; Microbiota; Microbial ecology
Sources: Web Of Science, ORCID
Added: April 25, 2022
2022 article
De novo phytosterol synthesis in animals
Michellod, D., Bien, T., Birgel, D., Jensen, M., Kleiner, M., Fearn, S., … Liebeke, M. (2022, April 22). (Vol. 4). Vol. 4.
Source: ORCID
Added: May 19, 2022
2022 review
Dietary protein and the intestinal microbiota: An understudied relationship
[Review of ]. ISCIENCE, 25(11).
Sources: Web Of Science, ORCID
Added: December 5, 2022
2022 journal article
Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities
FRONTIERS IN PLANT SCIENCE, 13.
author keywords: synthetic communities; plant microbiome; plant microbial interactions; metabolic modelling; flux balance analysis; elementary flux mode analysis
Sources: Web Of Science, ORCID
Added: December 5, 2022
2022 journal article
Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes
MOLECULAR PLANT-MICROBE INTERACTIONS, 35(11), 977–988.
author keywords: endosphere; metaproteomics; microbiome; microbiota; phytobiome; plant-microbe interactions; rhizoplane
MeSH headings : Arabidopsis; Microbiota; Chromatography, Liquid; Proteome; Mass Spectrometry; Plants
Sources: Web Of Science, ORCID
Added: November 1, 2022
2022 journal article
Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium
MICROBIOME, 10(1).
author keywords: Microbiome; Animal-bacterial symbiosis; Symbiont transmission; Phylosymbiosis; Intraspecific genetic variation
MeSH headings : Animals; Bacteria / genetics; Microbial Consortia; Phylogeny; Sulfates; Sulfur; Symbiosis; Annelida / microbiology
Sources: Web Of Science, ORCID
Added: November 7, 2022
2021 journal article
Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA
JOURNAL OF BACTERIOLOGY, 203(21).
author keywords: type VI secretion systems; Aliivibrio fischeri; microbial interactions; genomic island; symbiosis
MeSH headings : Aliivibrio fischeri / genetics; Aliivibrio fischeri / metabolism; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression Regulation, Bacterial / physiology; Genotype; Mutation; Promoter Regions, Genetic; Type VI Secretion Systems / genetics; Type VI Secretion Systems / metabolism
Sources: Web Of Science, ORCID
Added: November 1, 2021
2021 journal article
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
ELIFE, 10.
MeSH headings : Animals; Bacteria / isolation & purification; Bacterial Physiological Phenomena; Hydrothermal Vents / microbiology; Polychaeta / microbiology; Symbiosis
Sources: ORCID, Web Of Science
Added: January 18, 2021
2021 journal article
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
NATURE COMMUNICATIONS, 12(1).
MeSH headings : Adult; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Feces / microbiology; Female; Gastrointestinal Microbiome; Humans; Intestines / microbiology; Laboratories; Mass Spectrometry; Peptides / chemistry; Proteomics / methods; Workflow
Sources: Web Of Science, ORCID
Added: January 3, 2022
2021 journal article
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses
MICROBIOLOGY SPECTRUM, 9(2).
Ed(s): J. Gralnick
author keywords: mass spectrometry; 1D-LC-MS/MS; microbial communities; preservation methods; microbiome; field sampling; environmental microbiology
MeSH headings : Animals; Annelida / microbiology; Annelida / physiology; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Physiological Phenomena; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Phylogeny; Preservation, Biological / methods; Proteomics; Symbiosis
Sources: ORCID, Web Of Science
Added: October 28, 2021
2021 article
Evaluation of RNAlater™ as a field-compatible preservation method for metaproteomic analyses of bacteria-animal symbioses
Jensen, M., Wippler, J., & Kleiner, M. (2021, June 17). (Vol. 6). Vol. 6.
Source: ORCID
Added: August 9, 2021
2021 journal article
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes
MICROBIOLOGY SPECTRUM, 9(3).
Ed(s): C. Khursigara
author keywords: gut microbes; intestinal microbiome; LC-MS/MS; metaproteomics; microbiota; sample preservation; storage
MeSH headings : Animals; Bacteria / chemistry; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Chromatography, Liquid; Feces / chemistry; Feces / microbiology; Female; Gastrointestinal Microbiome; Male; Mice; Mice, Inbred C57BL; Peptides / chemistry; Preservation, Biological / methods; Proteomics / methods; Tandem Mass Spectrometry
Sources: ORCID, Web Of Science
Added: December 16, 2021
2021 article
Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium
Sato, Y., Wippler, J., Wentrup, C., Ansorge, R., Sadowski, M., Gruber-Vodicka, H., … Kleiner, M. (2021, January 30). (Vol. 1). Vol. 1.
Source: ORCID
Added: August 9, 2021
2021 review
Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes
(D. A. Hogan, Ed.) [Review of ]. PLOS PATHOGENS, 17(2).
Ed(s): D. Hogan
MeSH headings : Bacteria / classification; Bacteria / isolation & purification; Bacteria / metabolism; Computational Biology; Host Microbial Interactions; Humans; Microbiota; Proteome / analysis; Proteome / metabolism; Proteomics / methods
Sources: Web Of Science, ORCID
Added: February 26, 2021
2021 article
Highly variable fidelity drives symbiont community composition in an obligate symbiosis
Mankowski, A., Kleiner, M., Erséus, C., Leisch, N., Sato, Y., Volland, J.-M., … Gruber-Vodicka, H. (2021, April 28). (Vol. 4). Vol. 4.
Source: ORCID
Added: August 9, 2021
2021 article
Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses
ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718.
author keywords: chemosymbiosis; host-microbe associations; nutritional interactions; adaptations to symbiosis; metabolism; thiotroph; methanotroph
MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Ecosystem; Hydrothermal Vents; Phylogeny; Symbiosis / physiology
Sources: Web Of Science, ORCID
Added: November 15, 2021
2021 journal article
Microbe-dependent heterosis in maize
Proceedings of the National Academy of Sciences, 118(30).
author keywords: hybrid vigor; microbiome; maize; endophytes; rhizosphere
MeSH headings : Bacteria / metabolism; Fungi / physiology; Hybrid Vigor; Seedlings / growth & development; Seedlings / microbiology; Soil Microbiology; Zea mays / growth & development; Zea mays / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: July 21, 2021
2021 journal article
Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology
ISCIENCE, 24(12).
Sources: ORCID, Web Of Science
Added: November 7, 2021
2021 article
Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes
Kleiner, M., Kouris, A., Jensen, M., Grace, D. A., Liu, Y., Korenek, A., … Strous, M. (2021, March 30). (Vol. 3). Vol. 3.
Source: ORCID
Added: August 9, 2021
2020 journal article
Comparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions
The ISME Journal, 14(2), 649–656.
MeSH headings : Amino Acids / genetics; Amino Acids / metabolism; Animals; Bacteria / genetics; Bacteria / metabolism; Carbonic Anhydrases / metabolism; Chemoautotrophic Growth; Genome, Bacterial / genetics; Gills / metabolism; Host Microbial Interactions; Mytilidae / metabolism; Mytilidae / microbiology; Proteomics; Symbiosis / genetics; Symbiosis / physiology
Source: ORCID
Added: January 30, 2020
2020 journal article
Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition
MBIO, 11(1).
author keywords: Aliivibrio fischeri; aggregation; competition; proteomics; type VI secretion
MeSH headings : Aliivibrio fischeri / genetics; Aliivibrio fischeri / physiology; Animals; Decapodiformes / microbiology; Ecosystem; Gene Expression Regulation, Bacterial; Genotype; Proteomics; Seawater; Symbiosis; Type VI Secretion Systems / genetics; Type VI Secretion Systems / metabolism; Viscosity
Sources: Web Of Science, ORCID
Added: April 6, 2020
2020 journal article
High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(16).
Sources: Web Of Science, ORCID
Added: May 8, 2020
2020 journal article
High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(31).
Sources: Web Of Science, ORCID
Added: October 5, 2020
2020 journal article
High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(31).
Ed(s): F. Stewart
Sources: Web Of Science, ORCID
Added: June 14, 2021
2020 journal article
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
ISME JOURNAL, 14(1), 104–122.
MeSH headings : Animals; Bivalvia / microbiology; Carbon Cycle; Citric Acid Cycle; Epsilonproteobacteria / classification; Epsilonproteobacteria / genetics; Epsilonproteobacteria / metabolism; Gammaproteobacteria / genetics; Photosynthesis; Phylogeny; Symbiosis
Sources: Web Of Science, ORCID
Added: January 6, 2020
2020 article
Metabolic differences between symbiont subpopulations in the deep-sea tubeworm Riftia pachyptila
Hinzke, T., Kleiner, M., Meister, M., Schlüter, R., Hentschker, C., Pané-Farré, J., … Markert, S. (2020, April 9). (Vol. 4). Vol. 4.
Source: ORCID
Added: August 9, 2021
2020 article
Microbe-dependent heterosis in maize
Wagner, M. R., Tang, C., Salvato, F., Clouse, K. M., Bartlett, A., Sermons, S., … Kleiner, M. (2020, May 7). (Vol. 5). Vol. 5.
Source: ORCID
Added: May 8, 2020
2020 article
Microbial DNA on the move: sequencing based detection and analysis of transduced DNA in pure cultures and microbial communities
Kleiner, M., Bushnell, B., Sanderson, K. E., Hooper, L. V., & Duerkop, B. A. (2020, January 16). (Vol. 1). Vol. 1.
Source: ORCID
Added: August 9, 2021
2020 journal article
Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
MICROBIOME, 8(1).
MeSH headings : Animals; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Gastrointestinal Microbiome / genetics; Gene Transfer, Horizontal / genetics; Genomics; Male; Mice; Mice, Inbred C57BL; Microbiota / genetics; Reproducibility of Results; Transduction, Genetic
Sources: Web Of Science, ORCID
Added: December 21, 2020
2019 journal article
A shared core microbiome in soda lakes separated by large distances
NATURE COMMUNICATIONS, 10.
Sources: Web Of Science, ORCID
Added: October 7, 2019
2019 journal article
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(17), 8505–8514.
author keywords: endosymbiont; chemoautotrophic; ecophysiology; energy storage; host nutrition
MeSH headings : Animals; Chemoautotrophic Growth / genetics; Chemoautotrophic Growth / physiology; Genome, Bacterial / genetics; Metabolic Networks and Pathways; Platyhelminths / metabolism; Platyhelminths / microbiology; Platyhelminths / physiology; Rhodospirillaceae / genetics; Rhodospirillaceae / physiology; Symbiosis / genetics; Symbiosis / physiology
Sources: Web Of Science, ORCID
Added: May 6, 2019
2019 journal article
Genetic evidence for two carbon fixation pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in symbiotic and free-living bacteria
MSphere, 4(1), e00394–18.
Ed(s): S. Hallam
author keywords: carbon dioxide assimilation; carbon metabolism; electron transport; lithoautotrophic metabolism; symbiosis
MeSH headings : Animals; Bacterial Proteins / metabolism; Carbon Cycle; Carbon Dioxide / metabolism; Chromatiaceae / physiology; Citric Acid Cycle; DNA, Bacterial; Photosynthesis; Phylogeny; Polychaeta / microbiology; Symbiosis
Sources: Web Of Science, ORCID
Added: February 7, 2019
2019 journal article
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.
MBio, 10(6).
Ed(s): D. Distel & E. Ruby
author keywords: host-microbe interactions; symbiosis; holobiont; chemosynthesis; hydrothermal vents; metaproteomics
MeSH headings : Adaptation, Biological; Animal Nutritional Physiological Phenomena; Animals; Aquatic Organisms; Energy Metabolism; Metabolic Networks and Pathways; Metabolome; Microbiota; Oxidation-Reduction; Polychaeta / metabolism; Polychaeta / microbiology; Polychaeta / ultrastructure; Proteome; Proteomics / methods; Seawater; Symbiosis
Source: ORCID
Added: January 30, 2020
2019 article
Host-microbe interactions in the chemosyntheticRiftia pachyptilasymbiosis
Hinzke, T., Kleiner, M., Breusing, C., Felbeck, H., Häsler, R., Sievert, S. M., … Markert, S. (2019, May 27). (Vol. 5). Vol. 5.
Source: ORCID
Added: August 9, 2021
2019 journal article
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
MSYSTEMS, 4(3).
author keywords: LC-MS; metagenomics; metaproteomics; metatranscriptomics; microbiome; microbiota; proteomics; symbiosis
Sources: Web Of Science, ORCID
Added: September 9, 2019
2019 journal article
More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics
FRONTIERS IN MICROBIOLOGY, 10.
author keywords: microbiota; microbiome; mock community; method evaluation; microbial ecology; Q Exactive; liquid chromatography; GeLC
Sources: Web Of Science, ORCID
Added: March 4, 2019
2019 journal article
Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation
MBIO, 10(3).
Ed(s): S. Giovannoni
author keywords: gammaproteobacteria; chemosynthesis; ectosymbiont; lithoheterotrophy; meiofauna; protist
MeSH headings : Aquatic Organisms / microbiology; Autotrophic Processes; Bacteria / genetics; Bacteria / metabolism; Carbon Cycle / genetics; Carbon Dioxide / metabolism; Ciliophora / microbiology; Gene Expression Profiling; Genomics; Italy; Oxidation-Reduction; RNA, Ribosomal, 16S / genetics; Sulfur / metabolism; Symbiosis
Sources: Web Of Science, ORCID
Added: July 22, 2019
2019 article
Sulfur-oxidizing symbionts without canonical genes for autotrophic CO2fixation
Seah, B. K. B., Antony, C. P., Huettel, B., Zarzycki, J., Borzyskowski, L. S., Erb, T. J., … Gruber-Vodicka, H. R. (2019, February 5). (Vol. 2). Vol. 2.
Source: ORCID
Added: August 9, 2021
2019 article
TheTrichoplaxmicrobiome: the simplest animal lives in an intimate symbiosis with two intracellular bacteria
Gruber-Vodicka, H. R., Leisch, N., Kleiner, M., Hinzke, T., Liebeke, M., McFall-Ngai, M., … Dubilier, N. (2019, March 5). (Vol. 3). Vol. 3.
Source: ORCID
Added: August 9, 2021
2019 journal article
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2
NATURE MICROBIOLOGY, 4(9), 1465–1474.
MeSH headings : Animals; Bacteria / classification; Bacteria / genetics; Bacteria / metabolism; Biosynthetic Pathways; Endoplasmic Reticulum, Rough / microbiology; Genome, Bacterial / genetics; Microbiota / genetics; Phylogeny; Placozoa / cytology; Placozoa / microbiology; Species Specificity; Symbiosis; Vacuoles / microbiology; Water Microbiology
Sources: Web Of Science, ORCID
Added: September 9, 2019
2018 article
A metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
Kleiner, M., Dong, X., Hinzke, T., Wippler, J., Thorson, E., Mayer, B., & Strous, M. (2018, January 9). (Vol. 1). Vol. 1.
Source: ORCID
Added: August 9, 2021
2018 journal article
Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation
Nature Microbiology, 3(8), 961–961.
Sources: Crossref, ORCID
Added: January 25, 2020
2018 journal article
Centrifugation-based enrichment of bacterial cell populations for metaproteomic studies on bacteria-invertebrate symbioses
Springer, 1841, 319–334.
Ed(s): D. Becher
author keywords: Bacteria-invertebrate symbiosis; Metaproteome; Differential pelleting; Rate-zonal density gradient centrifugation; Isopycnic density gradient centrifugation; Percoll (R); HistoDenz (TM)
MeSH headings : Animals; Bacteria / metabolism; Centrifugation / methods; Centrifugation, Density Gradient; Invertebrates / microbiology; Proteome; Proteomics / methods; Symbiosis
Sources: Web Of Science, ORCID
Added: February 7, 2019
2018 journal article
Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria.
Frontiers in Microbiology.
author keywords: nitrification; Nitrosomonas europaea; Nitrosomonas ureae; Nitrosospira multiformis; Calvin-Benson-Bassham cycle; Q Exactive Plus; proteomics; ammonia-oxidizing bacteria (AOB)
Source: ORCID
Added: February 3, 2019
2018 article
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
Assié, A., Leisch, N., Meier, D. V., Gruber-Vodicka, H., Tegetmeyer, H. E., Meyerdirks, A., … Petersen, J. M. (2018, October 8). (Vol. 10). Vol. 10.
Source: ORCID
Added: August 9, 2021
2018 journal article
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(24), E5576–E5584.
author keywords: Protein-SIP; metaproteome; microbial ecology; microbiome; Q Exactive
MeSH headings : Animals; Carbon / metabolism; Carbon Isotopes / metabolism; Environmental Microbiology; Isotope Labeling / methods; Metabolic Networks and Pathways / physiology; Microbiota / physiology; Proteome / metabolism; Proteomics / methods; Software; Symbiosis / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
Murine colitis reveals a disease-associated bacteriophage community
NATURE MICROBIOLOGY, 3(9), 1023–1031.
MeSH headings : Animals; Bacteriophages / genetics; Bacteriophages / isolation & purification; Cells, Cultured; Colitis / pathology; Colitis / virology; Disease Models, Animal; Dysbiosis / virology; Gastrointestinal Microbiome / physiology; Genome, Viral / genetics; Humans; Intestinal Mucosa / virology; Male; Mice; Mice, Inbred C57BL; Mice, Knockout
Sources: Web Of Science, ORCID
Added: October 19, 2018
2018 journal article
Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors
FRONTIERS IN MICROBIOLOGY, 9.
author keywords: souring control; biocide; sulfate reduction; hydrogen sulfide; sodium nitroprusside
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Assessing species biomass contributions in microbial communities via metaproteomics
NATURE COMMUNICATIONS, 8.
MeSH headings : Archaea / classification; Archaea / genetics; Archaea / metabolism; Bacteria / classification; Bacteria / genetics; Bacteria / metabolism; Bacteriophages / classification; Bacteriophages / genetics; Bacteriophages / metabolism; Biomass; Genomics / methods; Humans; Lakes / microbiology; Microbiota / genetics; Microbiota / physiology; Proteome / metabolism; Proteomics / methods; RNA, Ribosomal, 16S / genetics; Saliva / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 article
Assessing species biomass contributions in microbial communities via metaproteomics
Kleiner, M., Thorson, E., Sharp, C. E., Dong, X., Liu, D., Li, C., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
Source: ORCID
Added: February 3, 2019
2017 journal article
Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp
Frontiers in Microbiology, 8.
author keywords: metagenomics; amplicon sequencing; bioinformatics; microbial ecology; microbiome
Source: ORCID
Added: February 3, 2019
2017 article
Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp
Dong, X., Kleiner, M., Sharp, C. E., Thorson, E., Li, C., Liu, D., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
Source: ORCID
Added: February 3, 2019
2017 journal article
Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.
Standards in Genomic Sciences.
author keywords: Uncultured endosymbiont; Hydrothermal vents; Marine invertebrate symbiosis; Thiotrophy; Autotrophy
Source: ORCID
Added: February 3, 2019
2017 journal article
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis
The ISME Journal, 11(2), 463–477.
MeSH headings : Animals; Biosynthetic Pathways; Gammaproteobacteria / physiology; Gills / microbiology; Hydrothermal Vents; Methane / metabolism; Mytilidae / genetics; Mytilidae / microbiology; Oxidation-Reduction; Proteome; Species Specificity; Sulfur / metabolism; Symbiosis
Source: ORCID
Added: February 3, 2019
2017 dataset
Metaproteomics of phototrophic biomats from two soda lakes in the Canadian Rocky Mountains
http://www.ebi.ac.uk/pride/archive/projects/PXD006343
Source: ORCID
Added: February 3, 2019
2017 journal article
Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance
PeerJ Preprints, 5, e2846v1.
Sources: NC State University Libraries, ORCID
Added: February 7, 2019
2017 article
Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance
Kleiner, M. (2017, March 2). (Vol. 3). Vol. 3.
Source: ORCID
Added: August 9, 2021
2017 dataset
Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
http://www.ebi.ac.uk/pride/archive/projects/PXD006118
Source: ORCID
Added: February 3, 2019
2017 dataset
Re-analysis of an ultra-deep and quantitative saliva proteome
http://www.ebi.ac.uk/pride/archive/projects/PXD006366
Source: ORCID
Added: February 3, 2019
2017 journal article
Short-chain alkanes fuel mussels and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps
Nature Microbiology, 2, 17093.
MeSH headings : Alkanes / metabolism; Animals; Bivalvia / microbiology; Carbon / metabolism; Energy Metabolism; Gene Expression Profiling; Genomics; Gulf of Mexico; Piscirickettsiaceae / genetics; Piscirickettsiaceae / metabolism; Piscirickettsiaceae / physiology; Porifera / microbiology; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019
2016 dataset
Bathymodiolus azoricus host-symbiont proteomics
http://www.ebi.ac.uk/pride/archive/projects/PXD004061
Source: ORCID
Added: February 3, 2019
2016 journal article
Chemosynthetic sulphur-oxidizing symbionts of marine invertebrate animals are capable of nitrogen fixation
Nature Microbiology, 2, 16195.
MeSH headings : Animals; Aquatic Organisms / microbiology; Bacteria / enzymology; Bacteria / genetics; Bivalvia / microbiology; Chromadorea / microbiology; Gene Expression Profiling; Nitrogen Fixation; Nitrogenase / genetics; Proteome / analysis; Sequence Analysis, DNA; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019
2016 journal article
Closely coupled evolutionary history of ecto- and endosymbionts from two distantly-related animal phyla
Molecular Ecology, 25(13), 3203–3223.
author keywords: cospeciation; gutless oligochaetes; nematodes; Phallodrilinae; Stilbonematinae; Thiosymbion
MeSH headings : Animals; Annelida / microbiology; Biological Evolution; DNA, Bacterial / genetics; Gammaproteobacteria / genetics; Genetic Markers; Nematoda / microbiology; Oceans and Seas; Phylogeny; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019
2016 dataset
Differential proteomics of Lenisia limosa (Breviatea) and its epibiotic Arcobacter symbiont
http://www.ebi.ac.uk/pride/archive/projects/PXD003275
Source: ORCID
Added: February 3, 2019
2016 journal article
Environmental Breviatea harbor mutualistic Arcobacter epibionts
Nature, 534(7606), 254–258.
MeSH headings : Arcobacter / genetics; Arcobacter / physiology; Eukaryota / enzymology; Eukaryota / genetics; Eukaryota / physiology; Genetic Fitness; Hydrogen / metabolism; Hydrogenase / genetics; Hydrogenase / metabolism; NADP / metabolism; Proteomics; Symbiosis / genetics; Transcriptome; Virulence / genetics; Virulence Factors / genetics; Virulence Factors / metabolism
Sources: ORCID, Web Of Science
Added: February 3, 2019
2016 journal article
MiL-FISH: Multi-labelled oligonucleotides for fluorescence in situ hybridisation improve visualization of bacterial cells
Applied and Environmental Microbiology, 82(1), 62–70.
MeSH headings : Bacteria / cytology; Bacteria / genetics; Flow Cytometry; In Situ Hybridization, Fluorescence / methods; Oligonucleotide Probes / chemistry; Oligonucleotide Probes / genetics; Staining and Labeling
Sources: ORCID, Web Of Science
Added: February 3, 2019
2016 dataset
Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia
http://www.ebi.ac.uk/pride/archive/projects/PXD004536
Source: ORCID
Added: February 3, 2019
2016 dataset
Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico
http://www.ebi.ac.uk/pride/archive/projects/PXD005351
Source: ORCID
Added: February 3, 2019
2016 journal article
Spontaneous Reversions of an Evolutionary Trait Loss Reveal Regulators of a Small RNA That Controls Multicellular Development in Myxobacteria
Journal of Bacteriology, 198(23), 3142–3151.
Ed(s): C. Mullineaux
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Biological Evolution; Gene Expression Regulation, Bacterial; Gene Expression Regulation, Developmental; Histidine Kinase / genetics; Histidine Kinase / metabolism; Mutation; Myxococcus xanthus / genetics; Myxococcus xanthus / growth & development; Myxococcus xanthus / metabolism; RNA, Bacterial / genetics; RNA, Bacterial / metabolism
Source: ORCID
Added: February 3, 2019
2016 journal article
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
BMC Genomics, 17(1).
author keywords: RNA-Seq; Annelida; Oligochaeta; Phallodrilinae; PGRP; FREP; SRCR; Respiratory pigment; Carbon monoxide; Immunology; Chemosynthetic symbiosis
MeSH headings : Adaptation, Biological / genetics; Adaptation, Biological / immunology; Amino Acid Sequence; Animals; Biomarkers; Computational Biology / methods; Gene Expression Profiling / methods; High-Throughput Nucleotide Sequencing; Immunity, Innate / genetics; Microbiota; Models, Biological; Oligochaeta / genetics; Oligochaeta / immunology; Oligochaeta / metabolism; Proteome; Proteomics / methods; Receptors, Pattern Recognition / metabolism; Symbiosis / genetics; Symbiosis / immunology; Transcriptome
Source: ORCID
Added: February 3, 2019
2016 dataset
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=77bbe652de0b4439b9a9e89016f99c93
Source: ORCID
Added: February 3, 2019
2015 journal article
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
ELife, 4, e07966.
MeSH headings : Animals; Aquatic Organisms / microbiology; Bacteria / genetics; Bacteria / growth & development; Bacterial Toxins / biosynthesis; Bacterial Toxins / genetics; Bivalvia / microbiology; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Gene Expression Profiling; Genome, Bacterial; Hydrothermal Vents; Molecular Sequence Data; Proteome / analysis; Seawater; Sequence Analysis, DNA; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019
2015 journal article
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
BMC Genomics, 16(7), 7.
author keywords: Virus metagenomics; Viral metagenomes; Virus-like particles; Microbiome; Bacteriophage; CsCl density gradient
MeSH headings : Animals; Bacteriophages / genetics; Bacteriophages / isolation & purification; Contig Mapping; DNA, Viral / analysis; DNA, Viral / isolation & purification; Feces / virology; Genetic Techniques / standards; Intestines / virology; Metagenome; Metagenomics / methods; Mice; Mice, Inbred C57BL; Reproducibility of Results; Sequence Analysis, DNA
Sources: ORCID, Web Of Science
Added: February 3, 2019
2015 journal article
Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments
Environmental Microbiology, 17(12), 5023–5035.
MeSH headings : Animals; Bacteria / metabolism; Carbon Dioxide / metabolism; Carbon Monoxide / metabolism; Energy Metabolism; Geologic Sediments / microbiology; Hydrogen / metabolism; Mediterranean Region; Oligochaeta / microbiology; Oxidation-Reduction; Seawater / microbiology; Spectrometry, Mass, Secondary Ion; Sulfur Compounds / metabolism; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019
2014 journal article
Identification and activity of acetate-assimilating bacteria in diffuse fluids venting from deep-sea hydrothermal systems
FEMS Microbiology Ecology, 90(3), 731–746.
author keywords: Epsilonproteobacteria; Gammaproteobacteria; heterotrophy; 16S rRNA gene; nanoSIMS; stable isotopes
MeSH headings : Acetates / metabolism; Aquatic Organisms / genetics; Base Sequence; Epsilonproteobacteria / classification; Epsilonproteobacteria / genetics; Epsilonproteobacteria / metabolism; Gammaproteobacteria / classification; Gammaproteobacteria / genetics; Gammaproteobacteria / metabolism; Heterotrophic Processes; Hydrothermal Vents / microbiology; In Situ Hybridization, Fluorescence; Microbial Consortia / genetics; Molecular Sequence Data; Phylogeny; RNA, Ribosomal, 16S / genetics; Seawater / microbiology; Sequence Analysis, DNA
Sources: ORCID, Web Of Science
Added: February 3, 2019
2013 journal article
Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts
Mbio, 4(3).
MeSH headings : Animals; Bacteria / enzymology; Bacterial Physiological Phenomena; Bacterial Proteins / biosynthesis; Gene Expression; Metagenomics / methods; Oligochaeta / microbiology; Proteome / analysis; Proteomics / methods; Symbiosis; Transposases / biosynthesis
Source: ORCID
Added: February 3, 2019
2012 journal article
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Current Opinion in Microbiology, 15(5), 621–631.
Source: ORCID
Added: February 3, 2019
2012 journal article
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Current Opinion in Microbiology, 15(5), 621–631.
MeSH headings : Animals; Aquatic Organisms / microbiology; Aquatic Organisms / physiology; Bacteria / genetics; Bacteria / metabolism; Bacterial Physiological Phenomena; Evolution, Molecular; Gene Transfer, Horizontal; Genetic Variation; Genomics / methods; Invertebrates / microbiology; Invertebrates / physiology; Metabolic Networks and Pathways / genetics; Oxidation-Reduction; Phylogeny; RNA, Ribosomal, 16S / genetics; Sulfur Compounds / metabolism; Symbiosis
Sources: Crossref, ORCID
Added: September 12, 2020
2012 journal article
Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use
Proceedings of the National Academy of Sciences of the United States of America, 109(19), E1173–E1182.
author keywords: 3-hydroxypropionate bi-cycle; Calvin cycle; proton-translocating pyrophosphatase; pyrophosphate dependent phosphofructokinase; metagenomics
MeSH headings : Animals; Bacteria / growth & development; Bacteria / metabolism; Carbon / metabolism; Carbon Cycle; Chromatography, High Pressure Liquid; Ecosystem; Electrophoresis, Polyacrylamide Gel; Energy Metabolism; Host-Pathogen Interactions; Hydrogen / metabolism; Mass Spectrometry; Metabolic Networks and Pathways; Metabolomics / methods; Oligochaeta / metabolism; Oligochaeta / microbiology; Proteomics / methods; Seawater; Symbiosis
Source: ORCID
Added: February 3, 2019
2011 journal article
Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont
Proteomics, 11(15), 3106–3117.
author keywords: Carbon fixation; Endosymbionts; Metaproteome; Microbiology; Riftia pachyptila; Sulfide oxidation
MeSH headings : Animals; Bacteria / chemistry; Bacteria / metabolism; Bacterial Physiological Phenomena; Bacterial Proteins / analysis; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Carbon / metabolism; Carbon Cycle / physiology; Electrophoresis, Gel, Two-Dimensional; Membrane Proteins / analysis; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Membrane Transport Proteins / analysis; Membrane Transport Proteins / chemistry; Membrane Transport Proteins / metabolism; Metabolic Networks and Pathways; Nitrogen / metabolism; Polychaeta / microbiology; Polychaeta / physiology; Proteomics; Sulfur / metabolism; Symbiosis / physiology
Source: ORCID
Added: February 3, 2019
2011 article
The Olavius algarvensis Metagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm
Kleiner, M., Woyke, T., Ruehland, C., & Dubilier, N. (2011, November 10). Handbook of Molecular Microbial Ecology II, pp. 319–333.
Source: ORCID
Added: February 3, 2019
Employment
Updated: January 29th, 2020 06:21
2017 - present
North Carolina State University Raleigh, NC, US
Plant and Microbial Biology
