https://orcid.org/0000-0001-6904-0287
Metaproteomics, Microbiome, Symbiosis, Metagenomics, Microbial Physiology, Carbon Fixation Pathways
2021 journal article
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
ELIFE, 10.
2020 journal article
Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition
MBIO, 11(1).
2020 journal article
High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(16).
2020 journal article
High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(31).
2020 journal article
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)
ISME JOURNAL, 14(1), 104–122.
2020 journal article
Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
MICROBIOME, 8(1).
2019 journal article
A shared core microbiome in soda lakes separated by large distances
NATURE COMMUNICATIONS, 10.
2019 journal article
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(17), 8505–8514.
2019 journal article
Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.
The ISME Journal.
2019 journal article
Genetic evidence for two carbon fixation pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in symbiotic and free-living bacteria
MSphere, 4(1), e00394–18.
2019 journal article
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.
MBio.
2019 journal article
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
MSYSTEMS, 4(3).
2019 journal article
More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics
FRONTIERS IN MICROBIOLOGY, 10.
2019 journal article
Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation
MBIO, 10(3).
2019 journal article
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2
NATURE MICROBIOLOGY, 4(9), 1465–1474.
2018 journal article
Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation
Nature Microbiology, 3(8), 961–961.
2018 journal article
Centrifugation-based enrichment of bacterial cell populations for metaproteomic studies on bacteria-invertebrate symbioses
Springer, 1841, 319–334.
Ed(s): D. Becher
2018 journal article
Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria.
Frontiers in Microbiology.
2018 journal article
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.
Proceedings of the National Academy of Sciences of the United States of America, 6(24), E5576–5584.
2018 journal article
Murine colitis reveals a disease-associated bacteriophage community
NATURE MICROBIOLOGY, 3(9), 1023–1031.
2018 journal article
Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors.
Frontiers in Microbiology, 9.
2017 journal article
Assessing species biomass contributions in microbial communities via metaproteomics
Nature Communications, 4.
2017 article
Assessing species biomass contributions in microbial communities via metaproteomics
Kleiner, M., Thorson, E., Sharp, C. E., Dong, X., Liu, D., Li, C., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
2017 journal article
Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp
Frontiers in Microbiology, 8.
2017 article
Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp
Dong, X., Kleiner, M., Sharp, C. E., Thorson, E., Li, C., Liu, D., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
2017 journal article
Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.
Standards in Genomic Sciences.
2017 dataset
Metaproteomics of phototrophic biomats from two soda lakes in the Canadian Rocky Mountains
2017 journal article
Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance
PeerJ Preprints, 5, e2846v1.
2017 dataset
Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
2017 dataset
Re-analysis of an ultra-deep and quantitative saliva proteome
2017 journal article
Short-chain alkanes fuel mussels and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps
Nature Microbiology, 2, 17093.
2016 dataset
Bathymodiolus azoricus host-symbiont proteomics
2016 journal article
Chemosynthetic sulphur-oxidizing symbionts of marine invertebrate animals are capable of nitrogen fixation
Nature Microbiology, 2, 16195.
2016 journal article
Closely coupled evolutionary history of ecto- and endosymbionts from two distantly-related animal phyla
Molecular Ecology, 25(13), 3203–3223.
2016 dataset
Differential proteomics of Lenisia limosa (Breviatea) and its epibiotic Arcobacter symbiont
2016 journal article
Environmental Breviatea harbor mutualistic Arcobacter epibionts
Nature, 534(7606), 254–258.
2016 journal article
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis
The ISME Journal, 11(2), 463–477.
2016 journal article
MiL-FISH: Multi-labelled oligonucleotides for fluorescence in situ hybridisation improve visualization of bacterial cells
Applied and Environmental Microbiology, 82(1), 62–70.
2016 dataset
Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia
2016 dataset
Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico
2016 journal article
Spontaneous Reversions of an Evolutionary Trait Loss Reveal Regulators of a Small RNA That Controls Multicellular Development in Myxobacteria
Journal of Bacteriology, 198(23), 3142–3151.
Ed(s): C. Mullineaux
2016 journal article
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
BMC Genomics, 17(1).
2016 dataset
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
2015 journal article
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
ELife, 4, e07966.
2015 journal article
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
BMC Genomics, 16(7), 7.
2015 journal article
Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments
Environmental Microbiology, 17(12), 5023–5035.
2014 journal article
Identification and activity of acetate-assimilating bacteria in diffuse fluids venting from deep-sea hydrothermal systems
FEMS Microbiology Ecology, 90(3), 731–746.
2013 journal article
Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts
Mbio, 4(3).
2012 journal article
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Current Opinion in Microbiology, 15(5), 621–631.
2012 journal article
Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer
Current Opinion in Microbiology, 15(5), 621–631.
2012 journal article
Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use
Proceedings of the National Academy of Sciences of the United States of America, 109(19), E1173–E1182.
2011 journal article
Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont
Proteomics, 11(15), 3106–3117.
2011 article
The Olavius algarvensis Metagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm
Kleiner, M., Woyke, T., Ruehland, C., & Dubilier, N. (2011, November 10). Handbook of Molecular Microbial Ecology II, pp. 319–333.
2017 - present