Manuel Kleiner

Hornstein, E. D., Charles, M., Franklin, M., Edwards, B., Vintila, S., Kleiner, M., & Sederoff, H. (2024). <i>IPD3</i>, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host <i>Arabidopsis</i> when restored long after its evolutionary loss. PLANT MOLECULAR BIOLOGY, 114(2). https://doi.org/10.1007/s11103-024-01422-3

Ratinskaia, L., Malavin, S., Zvi-Kedem, T., Vintila, S., Kleiner, M., & Rubin-Blum, M. (2024, April 5). Metabolically-versatileCa.Thiodiazotropha symbionts of the deep-sea lucinid clamLucinoma kazanihave the genetic potential to fix nitrogen. https://doi.org/10.1101/2024.04.05.588213

Petrone, B. L., Bartlett, A., Jiang, S., Korenek, A., Vintila, S., Tenekjian, C., … Kleiner, M. (2024, April 10). Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans. https://doi.org/10.1101/2024.04.09.588275

Michellod, D., Bien, T., Birgel, D., Violette, M., Kleiner, M., Fearn, S., … Liebeke, M. (2023). De novo phytosterol synthesis in animals. SCIENCE, 380(6644), 520–526. https://doi.org/10.1126/science.add7830

Parnell, J. J., Pal, G., Awan, A., Vintila, S., Houdinet, G., Hawkes, C. V., … Kleiner, M. (2023, December 15). Effective seed sterilization methods require optimization across maize genotypes. https://doi.org/10.1101/2023.12.14.571779

Swift, J. F., Kolp, M. R., Carmichael, A., Ford, N. E., Hansen, P. M., Sikes, B. A., … Wagner, M. R. (2023, April 12). Environmental legacy effects impact maize growth and microbiome assembly under drought stress. https://doi.org/10.1101/2023.04.11.536405

Parnell, J. J., Vintila, S., Tang, C., Wagner, M. R., & Kleiner, M. (2023, December 12). Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization (K. L. Hockett, Ed.). MICROBIOLOGY SPECTRUM, Vol. 12. https://doi.org/10.1128/spectrum.02401-23

Parnell, J. J., Vintila, S., Tang, C., Wagner, M. R., & Kleiner, M. (2023, May 10). Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization. https://doi.org/10.1101/2023.05.10.540175

Bartlett, A., Blakeley-Ruiz, J. A., Richie, T., Theriot, C. M., & Kleiner, M. (2023, December 7). Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies. https://doi.org/10.1101/2023.12.07.570621

Kleiner, M., Polerecky, L., Lott, C., Bergin, C., Häusler, S., Liebeke, M., … Dubilier, N. (2023, November 26). Mechanism of high energy efficiency of carbon fixation by sulfur-oxidizing symbionts revealed by single-cell analyses and metabolic modeling. https://doi.org/10.1101/2023.11.25.568684

Zvi-Kedem, T., Vintila, S., Kleiner, M., Tchernov, D., & Rubin-Blum, M. (2023, February 10). Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels. https://doi.org/10.1101/2023.02.09.527947

Zvi-Kedem, T., Vintila, S., Kleiner, M., Tchernov, D., & Rubin-Blum, M. (2023). Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels. ISME COMMUNICATIONS, 3(1). https://doi.org/10.1038/s43705-023-00254-4

Hornstein, E. D., Charles, M., Franklin, M., Edwards, B., Vintila, S., Kleiner, M., & Sederoff, H. (2023, March 7). Re-engineering a lost trait:IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. https://doi.org/10.1101/2023.03.06.531368

Kleiner, M., Kouris, A., Violette, M., D'Angelo, G., Liu, Y., Korenek, A., … Strous, M. (2023). Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes. MICROBIOME, 11(1). https://doi.org/10.1186/s40168-022-01454-1

Blakeley-Ruiz, J. A., & Kleiner, M. (2022). Considerations for constructing a protein sequence database for metaproteomics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952. https://doi.org/10.1016/j.csbj.2022.01.018

Michellod, D., Bien, T., Birgel, D., Jensen, M., Kleiner, M., Fearn, S., … Liebeke, M. (2022, April 22). De novo phytosterol synthesis in animals (Vol. 4). Vol. 4. https://doi.org/10.1101/2022.04.22.489198

Bartlett, A., & Kleiner, M. (2022). [Review of Dietary protein and the intestinal microbiota: An understudied relationship]. ISCIENCE, 25(11). https://doi.org/10.1016/j.isci.2022.105313

Beck, A. E., Kleiner, M., & Garrell, A.-K. (2022). Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.910377

Salvato, F., Vintila, S., Finkel, O. M., Dangl, J. L., & Kleiner, M. (2022). Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes. MOLECULAR PLANT-MICROBE INTERACTIONS, 35(11), 977–988. https://doi.org/10.1094/MPMI-05-22-0116-TA

Sato, Y., Wippler, J., Wentrup, C., Ansorge, R., Sadowski, M., Gruber-Vodicka, H., … Kleiner, M. (2022). Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. MICROBIOME, 10(1). https://doi.org/10.1186/s40168-022-01372-2

Smith, S., Salvato, F., Garikipati, A., Kleiner, M., & Septer, A. N. (2021). Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA. JOURNAL OF BACTERIOLOGY, 203(21). https://doi.org/10.1128/JB.00399-21

Hinzke, T., Kleiner, M., Meister, M., Schlueter, R., Hentschker, C., Pane-Farre, J., … Markert, S. (2021). Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis. ELIFE, 10. https://doi.org/10.7554/elife.58371

Bossche, T., Kunath, B. J., Schallert, K., Schaepe, S. S., Abraham, P. E., Armengaud, J., … Muth, T. (2021). Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. NATURE COMMUNICATIONS, 12(1). https://doi.org/10.1038/s41467-021-27542-8

Jensen, M., Wippler, J., & Kleiner, M. (2021). Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses. MICROBIOLOGY SPECTRUM, 9(2). https://doi.org/10.1128/Spectrum.01429-21

Jensen, M., Wippler, J., & Kleiner, M. (2021, June 17). Evaluation of RNAlater™ as a field-compatible preservation method for metaproteomic analyses of bacteria-animal symbioses (Vol. 6). Vol. 6. https://doi.org/10.1101/2021.06.16.448770

Mordant, A., & Kleiner, M. (2021). Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes. MICROBIOLOGY SPECTRUM, 9(3). https://doi.org/10.1128/Spectrum.01877-21

Sato, Y., Wippler, J., Wentrup, C., Ansorge, R., Sadowski, M., Gruber-Vodicka, H., … Kleiner, M. (2021, January 30). Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium (Vol. 1). Vol. 1. https://doi.org/10.1101/2021.01.30.428904

Salvato, F., Hettich, R. L., & Kleiner, M. (2021). (D. A. Hogan, Ed.) [Review of Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes]. PLOS PATHOGENS, 17(2). https://doi.org/10.1371/journal.ppat.1009245

Mankowski, A., Kleiner, M., Erséus, C., Leisch, N., Sato, Y., Volland, J.-M., … Gruber-Vodicka, H. (2021, April 28). Highly variable fidelity drives symbiont community composition in an obligate symbiosis (Vol. 4). Vol. 4. https://doi.org/10.1101/2021.04.28.441735

Maggie Sogin, E., Kleiner, M., Borowski, C., Gruber-Vodicka, H. R., & Dubilier, N. (2021). Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses. ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718. https://doi.org/10.1146/annurev-micro-051021-123130

Wagner, M. R., Tang, C., Salvato, F., Clouse, K. M., Bartlett, A., Vintila, S., … Kleiner, M. (2021). Microbe-dependent heterosis in maize. Proceedings of the National Academy of Sciences, 118(30). https://doi.org/10.1073/pnas.2021965118

Ataeian, M., Vadlamani, A., Haines, M., Mosier, D., Dong, X., Kleiner, M., … Hawley, A. K. (2021). Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology. ISCIENCE, 24(12). https://doi.org/10.1016/j.isci.2021.103405

Kleiner, M., Kouris, A., Jensen, M., Grace, D. A., Liu, Y., Korenek, A., … Strous, M. (2021, March 30). Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes (Vol. 3). Vol. 3. https://doi.org/10.1101/2021.03.29.437612

Ponnudurai, R., Heiden, S. E., Sayavedra, L., Hinzke, T., Kleiner, M., Hentschker, C., … Markert, S. (2020). Comparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions. The ISME Journal. https://doi.org/10.1038/s41396-019-0517-6

Speare, L., Smith, S., Salvato, F., Kleiner, M., & Septer, A. N. (2020). Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition. MBIO, 11(1). https://doi.org/10.1128/mBio.03060-19

Sato, Y., Wippler, J., Wentrup, C., Dubilier, N., & Kleiner, M. (2020). High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(16). https://doi.org/10.1128/MRA.00276-20

Sato, Y., Wippler, J., Wentrup, C., Woyke, T., Dubilier, N., & Kleiner, M. (2020). High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(31). https://doi.org/10.1128/MRA.00704-20.

Sato, Y., Wippler, J., Wentrup, C., Woyke, T., Dubilier, N., & Kleiner, M. (2020). High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(31). https://doi.org/10.1128/MRA.00704-20

Assie, A., Leisch, N., Meier, D. V., Gruber-Vodicka, H., Tegetmeyer, H. E., Meyerdierks, A., … Petersen, J. M. (2020). Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). ISME JOURNAL, 14(1), 104–122. https://doi.org/10.1038/s41396-019-0508-7

Hinzke, T., Kleiner, M., Meister, M., Schlüter, R., Hentschker, C., Pané-Farré, J., … Markert, S. (2020, April 9). Metabolic differences between symbiont subpopulations in the deep-sea tubeworm Riftia pachyptila (Vol. 4). Vol. 4. https://doi.org/10.1101/2020.04.08.032177

Wagner, M. R., Tang, C., Salvato, F., Clouse, K. M., Bartlett, A., Sermons, S., … Kleiner, M. (2020, May 7). Microbe-dependent heterosis in maize (Vol. 5). Vol. 5. https://doi.org/10.1101/2020.05.05.078766

Kleiner, M., Bushnell, B., Sanderson, K. E., Hooper, L. V., & Duerkop, B. A. (2020, January 16). Microbial DNA on the move: sequencing based detection and analysis of transduced DNA in pure cultures and microbial communities (Vol. 1). Vol. 1. https://doi.org/10.1101/2020.01.15.908442

Kleiner, M., Bushnell, B., Sanderson, K. E., Hooper, L. V., & Duerkop, B. A. (2020). Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. MICROBIOME, 8(1). https://doi.org/10.1186/s40168-020-00935-5

Zorz, J. K., Sharp, C., Kleiner, M., Gordon, P. M. K., Pon, R. T., Dong, X., & Strous, M. (2019). A shared core microbiome in soda lakes separated by large distances. NATURE COMMUNICATIONS, 10. https://doi.org/10.1038/s41467-019-12195-5

Jaeckle, O., Seah, B. K. B., Tietjen, M., Leisch, N., Liebeke, M., Kleiner, M., … Gruber-Vodicka, H. R. (2019). Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(17), 8505–8514. https://doi.org/10.1073/pnas.1818995116

Rubin-Blum, M., Dubilier, N., & Kleiner, M. (2019). Genetic evidence for two carbon fixation pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in symbiotic and free-living bacteria. MSphere, 4(1), e00394–18. https://doi.org/10.1128/msphere.00394-18

Hinzke, T., Kleiner, M., Breusing, C., Felbeck, H., Häsler, R., Sievert, S. M., … Markert, S. (2019). Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis. MBio, 10(6). https://doi.org/10.1128/mBio.02243-19

Hinzke, T., Kleiner, M., Breusing, C., Felbeck, H., Häsler, R., Sievert, S. M., … Markert, S. (2019, May 27). Host-microbe interactions in the chemosyntheticRiftia pachyptilasymbiosis (Vol. 5). Vol. 5. https://doi.org/10.1101/651323

Kleiner, M. (2019). Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities. MSYSTEMS, 4(3). https://doi.org/10.1128/mSystems.00115-19

Hinzke, T., Kouris, A., Hughes, R.-A., Strous, M., & Kleiner, M. (2019). More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics. FRONTIERS IN MICROBIOLOGY, 10. https://doi.org/10.3389/fmicb.2019.00238

Seah, B. K. B., Antony, C. P., Huettel, B., Zarzycki, J., Borzyskowski, L. S., Erb, T. J., … Gruber-Vodicka, H. R. (2019). Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation. MBIO, 10(3). https://doi.org/10.1128/mBio.01112-19

Seah, B. K. B., Antony, C. P., Huettel, B., Zarzycki, J., Borzyskowski, L. S., Erb, T. J., … Gruber-Vodicka, H. R. (2019, February 5). Sulfur-oxidizing symbionts without canonical genes for autotrophic CO2fixation (Vol. 2). Vol. 2. https://doi.org/10.1101/540435

Gruber-Vodicka, H. R., Leisch, N., Kleiner, M., Hinzke, T., Liebeke, M., McFall-Ngai, M., … Dubilier, N. (2019, March 5). TheTrichoplaxmicrobiome: the simplest animal lives in an intimate symbiosis with two intracellular bacteria (Vol. 3). Vol. 3. https://doi.org/10.1101/568287

Gruber-Vodicka, H. R., Leisch, N., Kleiner, M., Hinzke, T., Liebeke, M., McFall-Ngai, M., … Dubilier, N. (2019). Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. NATURE MICROBIOLOGY, 4(9), 1465–1474. https://doi.org/10.1038/s41564-019-0475-9

Kleiner, M., Dong, X., Hinzke, T., Wippler, J., Thorson, E., Mayer, B., & Strous, M. (2018, January 9). A metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities (Vol. 1). Vol. 1. https://doi.org/10.1101/245290

Petersen, J. M., Kemper, A., Gruber-Vodicka, H., Cardini, U., van der Geest, M., Kleiner, M., … Weber, M. (2018). Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nature Microbiology, 3(8), 961–961. https://doi.org/10.1038/S41564-018-0196-5

Hinzke, T., Kleiner, M., & Markert, S. (2018). Centrifugation-based enrichment of bacterial cell populations for metaproteomic studies on bacteria-invertebrate symbioses. Springer, 1841, 319–334. https://doi.org/10.1007/978-1-4939-8695-8_22

Zorz, J. K., Kozlowski, J. A., Stein, L. Y., Strous, M., & Kleiner, M. (2018). Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2018.00938

Assié, A., Leisch, N., Meier, D. V., Gruber-Vodicka, H., Tegetmeyer, H. E., Meyerdirks, A., … Petersen, J. M. (2018, October 8). Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria) (Vol. 10). Vol. 10. https://doi.org/10.1101/437616

Kleiner, M., Dong, X., Hinzke, T., Wippler, J., Thorson, E., Mayer, B., & Strous, M. (2018). Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(24), E5576–E5584. https://doi.org/10.1073/pnas.1722325115

Duerkop, B. A., Kleiner, M., Paez-Espino, D., Zhu, W., Bushnell, B., Hassell, B., … Hooper, L. V. (2018). Murine colitis reveals a disease-associated bacteriophage community. NATURE MICROBIOLOGY, 3(9), 1023–1031. https://doi.org/10.1038/s41564-018-0210-y

Fida, T. T., Voordouw, J., Ataeian, M., Kleiner, M., Okpala, G., Mand, J., & Voordouw, G. (2018). Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors. FRONTIERS IN MICROBIOLOGY, 9. https://doi.org/10.3389/fmicb.2018.00981

Kleiner, M., Thorson, E., Sharp, C. E., Dong, X., Liu, D., Li, C., & Strous, M. (2017). Assessing species biomass contributions in microbial communities via metaproteomics. NATURE COMMUNICATIONS, 8. https://doi.org/10.1038/s41467-017-01544-x

Kleiner, M., Thorson, E., Sharp, C. E., Dong, X., Liu, D., Li, C., & Strous, M. (2017, April). Assessing species biomass contributions in microbial communities via metaproteomics (Vol. 4). Vol. 4. https://doi.org/10.1101/130575

Dong, X., Kleiner, M., Sharp, C. E., Thorson, E., Li, C., Liu, D., & Strous, M. (2017). Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.01461

Dong, X., Kleiner, M., Sharp, C. E., Thorson, E., Li, C., Liu, D., & Strous, M. (2017, April). Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp (Vol. 4). Vol. 4. https://doi.org/10.1101/131631

Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont. (2017). Standards in Genomic Sciences. https://doi.org/10.1186/s40793-017-0266-y

Ponnudurai, R., Kleiner, M., Sayavedra, L., Petersen, J. M., Moche, M., Otto, A., … Markert, S. (2017). Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. The ISME Journal, 11(2), 463–477. https://doi.org/10.1038/ismej.2016.124

Metaproteomics of phototrophic biomats from two soda lakes in the Canadian Rocky Mountains [Data set]. (2017). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD006343

Kleiner, M. (2017). Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance. PeerJ Preprints, 5, e2846v1. https://doi.org/10.7287/peerj.preprints.2846v1

Kleiner, M. (2017, March 2). Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance (Vol. 3). Vol. 3. https://doi.org/10.7287/peerj.preprints.2846

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics [Data set]. (2017). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD006118

Re-analysis of an ultra-deep and quantitative saliva proteome [Data set]. (2017). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD006366

Rubin-Blum, M., Antony, C. P., Borowski, C., Sayavedra, L., Pape, T., Sahling, H., … Dubilier, N. (2017). Short-chain alkanes fuel mussels and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. Nature Microbiology, 2, 17093. https://doi.org/10.1038/nmicrobiol.2017.93

Bathymodiolus azoricus host-symbiont proteomics [Data set]. (2016). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD004061

Petersen, J. M., Kemper, A., Gruber-Vodicka, H., Cardini, U., Geest, M., Kleiner, M., … Weber, M. (2016). Chemosynthetic sulphur-oxidizing symbionts of marine invertebrate animals are capable of nitrogen fixation. Nature Microbiology, 2, 16195. https://doi.org/10.1038/nmicrobiol.2016.195

Zimmermann, J., Wentrup, C., Sadowski, M., Blazejak, A., Gruber-Vodicka, H., Kleiner, M., … Dubilier, N. (2016). Closely coupled evolutionary history of ecto- and endosymbionts from two distantly-related animal phyla. Molecular Ecology, 25(13), 3203–3223. https://doi.org/10.1111/mec.13554

Differential proteomics of Lenisia limosa (Breviatea) and its epibiotic Arcobacter symbiont [Data set]. (2016). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD003275

Hamann, E., Gruber-Vodicka, H., Kleiner, M., Tegetmeyer, H. E., Riedel, D., Littmann, S., … Nature. (2016). Environmental Breviatea harbor mutualistic Arcobacter epibionts. Nature, 534(7606), 254–258. https://doi.org/10.1038/nature18297

Schimak, M. P., Kleiner, M., Wetzel, S., Liebeke, M., Dubilier, N., & Fuchs, B. (2016). MiL-FISH: Multi-labelled oligonucleotides for fluorescence in situ hybridisation improve visualization of bacterial cells. Applied and Environmental Microbiology, 82(1), 62–70. https://doi.org/10.1128/AEM.02776-15

Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia [Data set]. (2016). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD004536

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico [Data set]. (2016). Retrieved from http://www.ebi.ac.uk/pride/archive/projects/PXD005351

Yu, Y.-T. N., Kleiner, M., & Velicer, G. J. (2016). Spontaneous Reversions of an Evolutionary Trait Loss Reveal Regulators of a Small RNA That Controls Multicellular Development in Myxobacteria. Journal of Bacteriology, 198(23), 3142–3151. https://doi.org/10.1128/jb.00389-16

Wippler, J., Kleiner, M., Lott, C., Gruhl, A., Abraham, P. E., Giannone, R. J., … Dubilier, N. (2016). Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis. BMC Genomics, 17(1). https://doi.org/10.1186/s12864-016-3293-y

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis [Data set]. (2016). Retrieved from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=77bbe652de0b4439b9a9e89016f99c93

Sayavedra, L., Kleiner, M., Ponnudurai, R., Wetzel, S., Pelletier, E., Barbe, V., … eLife. (2015). Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels. ELife, 4, e07966. https://doi.org/10.7554/eLife.07966

Kleiner, M., Hooper, L. V., & Duerkop, B. A. (2015). Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes. BMC Genomics, 16(7), 7. https://doi.org/10.1186/s12864-014-1207-4

Kleiner, M., Wentrup, C., Holler, T., Lavik, G., Harder, J., Lott, C., … Dubilier, N. (2015). Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments. Environmental Microbiology, 17(12), 5023–5035. https://doi.org/10.1111/1462-2920.12912

Winkel, M., Pjevac, P., Kleiner, M., Littmann, S., Meyerdierks, A., Amann, R., & Mußmann, M. (2014). Identification and activity of acetate-assimilating bacteria in diffuse fluids venting from deep-sea hydrothermal systems. FEMS Microbiology Ecology, 90(3), 731–746. https://doi.org/10.1111/1574-6941.12429

Kleiner, M., Young, J. C., Shah, M., VerBerkmoes, N. C., & Dubilier, N. (2013). Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts. Mbio, 4(3). https://doi.org/10.1128/mBio.00223-13

Kleiner, M., Petersen, J. M., & Dubilier, N. (2012). Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer. Current Opinion in Microbiology, 15(5), 621–631. https://doi.org/10.1016/j.mlb.2012.09.003

Kleiner, M., Petersen, J. M., & Dubilier, N. (2012). Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer. Current Opinion in Microbiology, 15(5), 621–631. https://doi.org/10.1016/j.mib.2012.09.003

Kleiner, M., Wentrup, C., Lott, C., Teeling, H., Wetzel, S., Young, J., … Dubilier, N. (2012). Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use. Proceedings of the National Academy of Sciences of the United States of America, 109(19), E1173–E1182. https://doi.org/10.1073/pnas.1121198109

Markert, S., Gardebrecht, A., Felbeck, H., Sievert, S. M., Klose, J., Becher, D., … Schweder, T. (2011). Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont. Proteomics, 11(15), 3106–3117. https://doi.org/10.1002/pmic.201100059

Kleiner, M., Woyke, T., Ruehland, C., & Dubilier, N. (2011, November 10). The Olavius algarvensis Metagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm. Handbook of Molecular Microbial Ecology II, pp. 319–333. https://doi.org/10.1002/9781118010549.ch32