Matthew K. Thompson

Works (12)

Updated: July 5th, 2023 15:49
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2013 journal article

Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics - application of the vibrational Stark effect to understand enzyme kinetics

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 430(3), 1011–1015.

By: G. Schkolnik, T. Utesch, J. Zhao*, S. Jiang*, M. Thompson*, M. Mroginski, P. Hildebrandt, S. Franzen* 

author keywords: Vibrational Stark effect; Hemoglobin; 4-mercaptobenzonitrile; Enzyme kinetics; Electric field
MeSH headings : Animals; Catalysis; Kinetics; Mutation; Peroxidase / chemistry; Peroxidase / genetics; Peroxidases / chemistry; Peroxidases / genetics; Polychaeta / enzymology; Protein Conformation; Spectroscopy, Fourier Transform Infrared; Static Electricity; Vibration
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

The Role of the Distal Histidine in H2O2 Activation and Heme Protection in both Peroxidase and Globin Functions

The Journal of Physical Chemistry B, 116(40), 12065–12077.

By: J. Zhao n, V. de Serrano n, R. Dumarieh n, M. Thompson n, R. Ghiladi n  & S. Franzen n 

co-author countries: United States of America 🇺🇸

Contributors: J. Zhao n, V. De Serrano n, R. Dumarieh n, M. Thompson n, R. Ghiladi n  & S. Franzen n 

MeSH headings : Biocatalysis; Chlorophenols / chemistry; Chlorophenols / metabolism; Heme / chemistry; Heme / metabolism; Hemoglobin A / chemistry; Hemoglobin A / metabolism; Histidine / chemistry; Histidine / genetics; Histidine / metabolism; Hydrogen Peroxide / chemistry; Hydrogen Peroxide / metabolism; Models, Molecular; Molecular Structure; Mutation; Oxidation-Reduction; Peroxidases / chemistry; Peroxidases / metabolism; Quinones / chemistry; Quinones / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

The dehaloperoxidase paradox

Biochimica Et Biophysica Acta (BBA) - Proteins and Proteomics, 1824(4), 578–588.

By: S. Franzen n , M. Thompson n & R. Ghiladi n 

co-author countries: United States of America 🇺🇸

Contributors: S. Franzen n , M. Thompson n & R. Ghiladi n 

author keywords: Peroxidase; Competitive inhibition; Hemoglobin; Phenol; Marine; Enzyme
MeSH headings : Amino Acid Motifs; Amino Acid Substitution; Animals; Enzyme Inhibitors / chemistry; Free Radicals / chemistry; Heme / chemistry; Hemoglobins / antagonists & inhibitors; Hemoglobins / chemistry; Hemoglobins / genetics; Humans; Hydrogen-Ion Concentration; Isoenzymes / antagonists & inhibitors; Isoenzymes / chemistry; Isoenzymes / genetics; Kinetics; Models, Molecular; Oxidation-Reduction; Peroxidases / antagonists & inhibitors; Peroxidases / chemistry; Peroxidases / genetics; Phenols / chemistry; Protein Binding
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 journal article

Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 16(4), 611–619.

By: F. Nicoletti *, M. Thompson n, S. Franzen n  & G. Smulevich *

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
author keywords: Sulfide; Dehaloperoxidase-hemoglobin; Resonance Raman; Detoxification; Oxygen
MeSH headings : Animals; Binding Sites; Biocatalysis; Hemoglobins / metabolism; Models, Molecular; Oxidation-Reduction; Peroxidase / metabolism; Polychaeta / chemistry; Polychaeta / enzymology; Sulfides / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Dehaloperoxidase-Hemoglobin from Amphitrite ornata Is Primarily a Monomer in Solution

JOURNAL OF PHYSICAL CHEMISTRY B, 115(14), 4266–4272.

By: M. Thompson n, S. Franzen n , M. Davis n, R. Oliver* & J. Krueger*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Crystallography, X-Ray; Dimerization; Hemoglobins / chemistry; Peroxidases / chemistry; Polychaeta / enzymology; Polychaeta / metabolism; Protein Conformation; Scattering, Small Angle; Solutions / chemistry; X-Ray Diffraction
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin

Biochemistry, 50(44), 9664–9680.

By: E. D’Antonio  n, J. D’Antonio n, V. de Serrano n, H. Gracz n, M. Thompson n, R. Ghiladi n , E. Bowden n , S. Franzen n 

co-author countries: United States of America 🇺🇸

Contributors: E. Dantonio  n, J. Dantonio n, V. De Serrano n, H. Gracz n, M. Thompson n, R. Ghiladi n , E. Bowden n , S. Franzen n 

MeSH headings : Animals; Aspartic Acid / chemistry; Aspartic Acid / genetics; Catalytic Domain / genetics; Crystallography, X-Ray; Electrochemistry; Globins / chemistry; Globins / genetics; Helminth Proteins / chemistry; Helminth Proteins / genetics; Histidine / chemistry; Histidine / genetics; Magnetic Resonance Spectroscopy; Mutagenesis, Site-Directed; Polychaeta / enzymology; Polychaeta / genetics; Spectrophotometry, Ultraviolet; Spectrum Analysis, Raman
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 journal article

Oxidative dechlorination of halogenated phenols catalyzed by two distinct enzymes: Horseradish peroxidase and dehaloperoxidase

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 505(1), 22–32.

By: L. Szatkowski, M. Thompson*, R. Kaminski, S. Franzen*  & A. Dybala-Defratyka

author keywords: Dehaloperoxidase; Horseradish peroxidase; Chlorine kinetic isotope effects; QM/MM; Halophenols; Oxidation
MeSH headings : Animals; Armoracia / enzymology; Halogenation; Halogens / metabolism; Horseradish Peroxidase / metabolism; Kinetics; Models, Molecular; Oxidation-Reduction; Peroxidases / metabolism; Phenols / metabolism; Polychaeta / enzymology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Compound ES of Dehaloperoxidase Decays via Two Alternative Pathways Depending on the Conformation of the Distal Histidine

Journal of the American Chemical Society, 132(49), 17501–17510.

By: M. Thompson n, S. Franzen n , R. Ghiladi n , B. Reeder  n & D. Svistunenko  n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸

Contributors: M. Thompson n, S. Franzen n , R. Ghiladi n , B. Reeder  n & D. Svistunenko  n

MeSH headings : Animals; Electron Spin Resonance Spectroscopy; Free Radicals / metabolism; Heme / chemistry; Heme / metabolism; Hemoglobins / chemistry; Hemoglobins / metabolism; Histidine / chemistry; Histidine / metabolism; Hydrogen Peroxide / metabolism; Kinetics; Models, Molecular; Molecular Conformation; Peroxidases / chemistry; Peroxidases / metabolism; Polychaeta / chemistry; Polychaeta / enzymology; Polychaeta / metabolism; Protein Conformation
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2010 journal article

Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function

BIOPHYSICAL JOURNAL, 99(5), 1586–1595.

By: M. Thompson n, M. Davis n, V. Serrano n, F. Nicoletti *, B. Howes*, G. Smulevich *, S. Franzen n 

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
MeSH headings : Animals; Catalytic Domain; Crystallography, X-Ray; Enzyme Inhibitors / chemistry; Enzyme Inhibitors / metabolism; Enzyme Inhibitors / pharmacology; Halogenation; Hemoglobins / chemistry; Hemoglobins / metabolism; Iodobenzenes / chemistry; Iodobenzenes / metabolism; Iodobenzenes / pharmacology; Kinetics; Models, Molecular; Peroxidases / antagonists & inhibitors; Peroxidases / chemistry; Peroxidases / metabolism; Polychaeta / enzymology; Spectrum Analysis, Raman
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Kinetic Analysis of a Naturally Occurring Bioremediation Enzyme: Dehaloperoxidase-Hemoglobin from Amphitrite ornata

JOURNAL OF PHYSICAL CHEMISTRY B, 114(43), 13823–13829.

By: H. Ma n, M. Thompson n, J. Gaff n & S. Franzen n 

co-author countries: China 🇨🇳 United States of America 🇺🇸
MeSH headings : Animals; Biodegradation, Environmental; Biological Products / chemistry; Biological Products / metabolism; Hemoglobins / chemistry; Hemoglobins / metabolism; Kinetics; Models, Molecular; Peroxidase / chemistry; Peroxidase / metabolism; Polychaeta / enzymology; Protein Conformation; Quantum Theory; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

New Insights into the Role of Distal Histidine Flexibility in Ligand Stabilization of Dehaloperoxidase-Hemoglobin from Amphitrite ornata

BIOCHEMISTRY, 49(9), 1903–1912.

By: F. Nicoletti *, M. Thompson n, B. Howes*, S. Franzen n  & G. Smulevich *

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
MeSH headings : Animals; Enzyme Stability; Ferric Compounds / chemistry; Hemoglobins / antagonists & inhibitors; Hemoglobins / chemistry; Hemoglobins / metabolism; Histidine / chemistry; Ligands; Magnetic Resonance Spectroscopy; Peroxidases / antagonists & inhibitors; Peroxidases / chemistry; Peroxidases / metabolism; Polychaeta / enzymology; Protein Binding; Protein Conformation; Spectrophotometry; Spectrum Analysis, Raman; Substrate Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Spectroscopic and Mechanistic Investigations of Dehaloperoxidase B fromAmphitrite ornata

Biochemistry, 49(31), 6600–6616.

By: J. D’Antonio n, E. D’Antonio  n, M. Thompson n, E. Bowden n , S. Franzen n , T. Smirnova n , R. Ghiladi n 

co-author countries: United States of America 🇺🇸

Contributors: . J. D'Antonio, . E.L. D'Antonio  n, M. Thompson n, E. Bowden n , S. Franzen n , T. Smirnova n , R. Ghiladi n 

MeSH headings : Animals; Cloning, Molecular; Halogenation; Hemoglobins; Iron; Kinetics; Oxidation-Reduction; Oxygen / metabolism; Peroxidases / genetics; Peroxidases / metabolism; Polychaeta / enzymology; Spectrum Analysis
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018