Marcelo Mollinari
Also known as: Marcelo
polyplod genetics; quantitative genetics
Works (47)
Updated: November 1st, 2024 05:06
2024 journal article
A Public Mid-Density Genotyping Platform for Hexaploid Sweetpotato (<i>Ipomoea batatas</i> [L.] Lam)
GENES, 15(8).
author keywords: sweetpotato; amplicon-sequencing; plant breeding; DArTag genotyping; microhaplotype
open access via doi.org (publisher)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 15, 2024
2024 journal article
Discovery of a major QTL for resistance to the guava root-knot nematode (<i>Meloidogyne enterolobii</i>) in 'Tanzania', an African landrace sweetpotato (<i>Ipomoea batatas</i>)
THEORETICAL AND APPLIED GENETICS, 137(10).
author keywords: Meloidogyne enterolobii; QTL; Root-knot nematodes; Marker-assisted breeding; QTL; Sweet potato; Root-knot nematodes; Marker-assisted breeding
Sources: Web Of Science, NC State University Libraries
Added: October 14, 2024
2024 journal article
Prediction of blueberry sensory texture attributes by integrating multiple instrumental measurements
POSTHARVEST BIOLOGY AND TECHNOLOGY, 218.
author keywords: Vaccinium spp.; Texture; Sensory; Fruit quality; Mechanical parameters; Predictive model
Sources: Web Of Science, NC State University Libraries
Added: September 23, 2024
2023 journal article
A public mid-density genotyping platform for alfalfa (Medicago sativa L.)
Genetic Resources, 4(8), 55–63.
TL;DR:
The creation of a DArTag panel of 3,000 loci distributed across the alfalfa (Medicago sativa L.) genome for use in molecular breeding and genomic insight is reported.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: January 28, 2024
2023 journal article
Advances in genomic characterization of Urochloa humidicola: exploring polyploid inheritance and apomixis
Theoretical and Applied Genetics, 136(11).
TL;DR:
The highest-density linkage map currently available for the hexaploid tropical forage grass U. humidicola is developed, providing new information regarding the genetic organization, mode of reproduction, and allopolyploid origin of U. humidicola, potential SNPs markers associated with apomixis for MAS and resources for research on polyploids and tropical forage grasses.
(via Semantic Scholar)
Sources: Crossref, NC State University Libraries
Added: February 2, 2024
2023 article
Advances in genomic characterization of<i>Urochloa humidicola</i>: exploring polyploid inheritance and apomixis
C. L. Moraes Aline, Mollinari, M., Ulbricht, R., Aono, A., Castro Lara, L. A., Pessoa-Filho, M., … Vigna, B. (2023, September 3). (Vol. 9). Vol. 9.
Source: ORCID
Added: January 28, 2024
2023 conference paper
Advances in the Development of Chromosome-Scale Haplotype-Resolved Genome Assemblies of Hexaploid Sweetpotatoes
International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.
Event: International Plant & Animal Genome 30 Conference
Source: NC State University Libraries
Added: February 15, 2024
2023 conference paper
Genetic Mapping in Interconnected Hexaploid Sweetpotato Populations
International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.
Event: International Plant & Animal Genome 30 Conference at San Diego, CA on January 12-16, 2019
Source: NC State University Libraries
Added: February 15, 2024
2023 conference paper
Selecting the Best Bioinformatic Pipeline for Evaluating Diploid and Auto-Tetraploid Garden Rose Genotype-by-Sequencing Data
International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.
Event: International Plant & Animal Genome 30 Conference
Source: NC State University Libraries
Added: February 15, 2024
2022 journal article
Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps
GigaScience, 12.
author keywords: genotyping error; haplotype; genetic maker; multiallelic
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Crossref, NC State University Libraries, Web Of Science
Added: February 2, 2024
2022 article
Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
BioRxiv, Vol. 11.
Source: ORCID
Added: January 28, 2024
2022 journal article
Polyploid Goes to Genomics
21st Century Pathology, 2(2), 113.
Source: NC State University Libraries
Added: February 15, 2024
2022 journal article
VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis
Journal of Open Source Software, 7(74), 4242.
Sources: ORCID, Crossref, NC State University Libraries
Added: January 28, 2024
2022 conference paper
VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis in
International Plant & Animal Genome XXIX Conference. Poster presented at the International Plant & Animal Genome XXIX Conference.
Event: International Plant & Animal Genome XXIX Conference
Source: NC State University Libraries
Added: February 15, 2024
2021 journal article
Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas)
Theoretical and Applied Genetics, 134(7), 1945–1955.
Contributors: B. Oloka n , G. Silva Pereira *, V. Amankwaah n, n , K. Pecota n , B. Yada *, B. Olukolu*, Z. Zeng n, G. Craig Yencho n
MeSH headings : Animals; Chromosome Mapping; Disease Resistance / genetics; Genetic Linkage; Genotype; Ipomoea batatas / genetics; Ipomoea batatas / parasitology; Plant Diseases / genetics; Plant Diseases / parasitology; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Tylenchoidea / pathogenicity
TL;DR:
A major dominant QTL for root-knot nematode (RKN) resistance is discovered using a high-density integrated genetic linkage map of hexaploid sweetpotato, which represents a significant step forward in understanding of the genetic architecture of RKN resistance and sets the stage for future utilization of genomics-assisted breeding inSweetpotato breeding programs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: April 4, 2021
2021 journal article
Meiosis in Polyploids and Implications for Genetic Mapping: A Review
Genes, 12(10), 1517.
Contributors: N. Soares *, n , G. Oliveira *, G. Pereira * & M. Vieira *
author keywords: auto- and allopolyploids; meiosis; early meiosis; genetic control; homoeologous recombination; genetic maps; allelic dosage; multilocus linkage
MeSH headings : Brassica napus / genetics; Chromosomes, Plant; Crossing Over, Genetic; Meiosis / genetics; Plant Breeding; Polyploidy; Triticum / genetics
TL;DR:
This review describes in detail the meiotic process in auto- and allopolyploids from the onset of prophase I through pairing, recombination, and bivalent formation, highlighting recent findings on the genetic control and mode of action of specific proteins that lead to diploid-like meiosis behavior in polyploid species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: November 15, 2021
2021 journal article
Quantitative Trait Locus Mapping for Common Scab Resistance in a Tetraploid Potato Full-Sib Population
Plant Disease, 105(10), 3048–3054.
Contributors: G. Da Pereira, n , X. Qu *, C. Thill*, Z. Zeng n, K. Haynes *, G. Yencho n
author keywords: disease resistance; polyploid QTL model; single-nucleotide polymorphism; Solanum tuberosum; Streptomyces spp
MeSH headings : Chromosome Mapping; Plant Tubers / genetics; Quantitative Trait Loci / genetics; Solanum tuberosum / genetics; Tetraploidy
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: January 18, 2022
2021 journal article
The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population
Heredity, 126(5), 817–830.
Contributors: G. Silva Pereira n, n , M. Schumann n, M. Clough n, Z. Zeng n & G. Yencho n
MeSH headings : Phenotype; Plant Breeding; Plant Tubers; Quantitative Trait Loci; Recombination, Genetic; Solanum tuberosum / genetics
TL;DR:
Genetic analyses of an F1 population derived from a cross involving ‘Atlantic’, a widely grown chipping variety in the USA, find those on chromosome 5 that have been previously implicated in maturity (StCDF1) and tuber formation (POTH1).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: March 29, 2021
2020 conference paper
Characterization of Sweetpotato Inheritance Using Ultradense Multilocus Genetic Map
International Plant & Animal Genome XXVIII Conference. Poster presented at the International Plant & Animal Genome XXVIII Conference.
Event: International Plant & Animal Genome XXVIII Conference
Source: NC State University Libraries
Added: February 15, 2024
2020 journal article
Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population
Genetics, 215(3), 579–595.
Contributors: G. Da Silva Pereira n, D. Gemenet n, n , B. Olukolu *, J. Wood *, F. Diaz *, V. Mosquera *, W. Gruneberg *
author keywords: multiple interval mapping; polyploid QTL model; restricted maximum likelihood; variance components; yield components; heritability
MeSH headings : Chromosome Mapping / methods; Genome-Wide Association Study / methods; Ipomoea batatas / genetics; Plant Breeding / methods; Polyploidy; Quantitative Trait Loci
TL;DR:
The use of a random-effect model approach to map multiple QTL based on score statistics in a sweetpotato bi-parental population (‘Beauregard’ × ‘Tanzania’) with 315 full-sibs is reported, which will facilitate the use of genomic tools insweetpotato breeding as well as in other autopolyploids.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Crossref, NC State University Libraries
Added: June 16, 2020
2020 article
Quantitative trait locus mapping for common scab resistance in a tetraploid potato full-sib population
BioRxiv.
Contributors: G. Silva Pereira *, n , X. Qu *, C. Thill*, Z. Zeng n, K. Haynes *, G. Yencho n
TL;DR:
A mapping population derived from a cross between two tetraploid potatoes in three environments under natural common scab pressure is evaluated, identifying a single quantitative trait locus (QTL) for lesion index in PA11, ME12 and joint analyses on linkage group 3, explaining 22~30% of the total variation.
(via Semantic Scholar)
Source: ORCID
Added: October 26, 2020
2020 journal article
Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops
Theoretical and Applied Genetics, 133(12), 3345–3363.
Contributors: D. Gemenet *, H. Lindqvist-Kreuze *, B. De Boeck *, G. Silva Pereira n, n , Z. Zeng n, G. Craig Yencho n, H. Campos *
MeSH headings : Crops, Agricultural / genetics; Crops, Agricultural / growth & development; Genotype; Ipomoea batatas / genetics; Ipomoea batatas / growth & development; Phenotype; Plant Breeding; Polymorphism, Single Nucleotide; Polyploidy; Quantitative Trait Loci; Selection, Genetic; Sequence Analysis, DNA
TL;DR:
It is concluded that genomic selection can help accelerate the rate of genetic gains in potato and sweetpotato, however, application of genomic selection should be considered as part of optimizing the entire breeding program.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: September 21, 2020
2020 article
fullsibQTL: An R package for QTL mapping in biparental populations of outcrossing species
BioRxiv.
Contributors: R. Gazaffi *, R. Amadeu *, n , J. Rosa *, C. Taniguti *, G. Margarido *, A. Garcia *
Source: ORCID
Added: January 28, 2024
2019 journal article
Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models
G3: Genes|Genomes|Genetics, 9(10), 3297–3314.
Contributors: n & A. Garcia *
author keywords: Polyploidy; Recombination; Fraction; Bivalent Pairing; Multilocus; Analysis
MeSH headings : Algorithms; Chromosome Mapping; Genetic Linkage; Genetics, Population; Haplotypes; Markov Chains; Models, Genetic; Polyploidy; Recombination, Genetic
TL;DR:
A statistical method to estimate recombination fractions and infer linkage phases in full-sib populations of autopolyploid species with even ploidy levels for a set of SNP markers using hidden Markov models is presented.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: October 28, 2019
2019 content posted
Multiple QTL mapping in autopolyploids: a random-effect model approach with application in a hexaploid sweetpotato full-sib population
Contributors: G. Silva Pereira n, D. Gemenet *, n , B. Olukolu *, J. Wood *, F. Diaz *, V. Mosquera *, W. Gruneberg *
UN Sustainable Development Goal Categories
17. Partnerships for the Goals
(OpenAlex)
Sources: Crossref, NC State University Libraries, ORCID
Added: February 24, 2020
2019 conference paper
Progress in the Implementation of Genomic Selection and Marker-Assisted Breeding in Sweetpotato
International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.
Event: International Plant & Animal Genome 30 Conference at San Diego, CA on January 12-16, 2019
Source: NC State University Libraries
Added: February 15, 2024
2019 journal article
Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]
Theoretical and Applied Genetics, 133(1), 23–36.
Contributors: D. Gemenet *, G. Silva Pereira n, B. De Boeck *, J. Wood *, n , B. Olukolu n, F. Diaz *, V. Mosquera *
MeSH headings : Alleles; Environment; Gene Expression Regulation, Plant; Genetic Association Studies; Ipomoea batatas / genetics; Phenotype; Plant Roots / genetics; Plant Roots / growth & development; Polyploidy; Quantitative Trait Loci / genetics; Quantitative Trait, Heritable; Starch / metabolism; beta Carotene / metabolism
TL;DR:
Two major quantitative trait loci on linkage group (LG) three (LG3) and twelve (LG12) affecting starch, β-carotene, and their correlated traits, dry matter and flesh color are identified and concluded that these two QTL regions act together in a cis and trans manner to inhibit starch biosynthesis in amyloplasts and enhance chromoplast biogenesis, carotenoid biosynthesis, and accumulation in orange-fleshed sweetpotato.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2019 journal article
Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping
G3: Genes|Genomes|Genetics, 10(1), 281–292.
Contributors: n , B. Olukolu *, G. Da Pereira, A. Khan *, D. Gemenet *, G. Craig Yencho n, Z. Zeng n
author keywords: Polyploidy; Genetic Linkage; Hexasomic Inheritance; Haplotyping; Preferential Pairing; Multivalent
MeSH headings : Chromosome Mapping / methods; Chromosome Pairing; Chromosomes, Plant / genetics; Genetic Linkage; Genetic Loci; Haplotypes; Ipomoea batatas / genetics; Polyploidy
TL;DR:
It is proposed that the hexasomic-bivalent inheritance promotes stability to the allelic transmission in sweetpotato.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Crossref, NC State University Libraries
Added: January 8, 2020
2018 conference paper
B.Construction of an Ultradense Genetic Map in Hexaploid Sweetpotato
International Plant & Animal Genome XXVI Conference. Poster presented at the International Plant & Animal Genome XXVI Conference.
Event: International Plant & Animal Genome XXVI Conference
Source: NC State University Libraries
Added: February 15, 2024
2016 conference paper
Construction of Genetic Maps in Complex Autopolyploids
International Conference in Quantitative Genetics 5. Poster presented at the International Conference in Quantitative Genetics 5, Madison, WI, USA.
Event: International Conference in Quantitative Genetics 5 at Madison, WI, USA
Source: NC State University Libraries
Added: February 15, 2024
2016 journal article
Evidence of Allopolyploidy in Urochloa humidicola Based on Cytological Analysis and Genetic Linkage Mapping
PLOS ONE, 11(4), e0153764.
Contributors: B. Vigna *, J. Santos*, L. Jungmann*, C. Valle *, * , M. Pastina *, M. Pagliarini*, A. Garcia *, A. Souza *
Ed(s): T. Yin
MeSH headings : Genetic Linkage; Meiosis; Microsatellite Repeats / genetics; Poaceae / genetics; Polyploidy
TL;DR:
The linkage map and the meiocyte analyses confirm previous reports of hybridization and suggest an allopolyploid origin of the hexaploid U. humidicola and confirm the need for additional studies to search for a co-segregating marker.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2016 journal article
QTL mapping including codominant SNP markers with ploidy level information in a sugarcane progeny
Euphytica, 211(1), 1–16.
Contributors: E. Costa *, C. Anoni*, M. Mancini *, F. Santos, T. Marconi *, R. Gazaffi *, M. Pastina *, D. Perecin *
author keywords: Integrated map; Linkage analysis; Multiple dosage; Polyploidy
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2014 journal article
A model for quantitative trait loci mapping, linkage phase, and segregation pattern estimation for a full-sib progeny
Tree Genetics & Genomes, 10(4), 791–801.
Contributors: R. Gazaffi *, G. Margarido *, M. Pastina *, * & A. Garcia *
author keywords: Genetic architecture; Full-sib progeny; Composite interval mapping; Mixture models; F-1 population; Outbred species
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2014 conference paper
A new method to construct genetic maps in complex autopolyploids using quantitative SNP genotyping
Kansas State Conference on Applied Statistics in Agriculture. Poster presented at the Kansas State Conference on Applied Statistics in Agriculture, Manhattan, KS, USA.
Event: Kansas State Conference on Applied Statistics in Agriculture at Manhattan, KS, USA
Source: NC State University Libraries
Added: February 15, 2024
2014 chapter
Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms
In Methods in Molecular Biology (Vol. 1245, pp. 215–241).
Contributors: * & O. Serang *
author keywords: Polyploids; MassARRAY; SNP; Quantitative genotyping
MeSH headings : Alleles; Crosses, Genetic; Genetic Loci / genetics; Genotype; Genotyping Techniques / methods; Polymorphism, Single Nucleotide / genetics; Polyploidy; Saccharum / genetics; Software; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Statistics as Topic
TL;DR:
The experimental methods for collecting relative allele intensities and the practical concerns for inferring genotypes using Bayesian inference via the software package SuperMASSA are described and demonstrated.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2013 journal article
SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids
Scientific Reports, 3(1).
Contributors: A. Garcia *, * , T. Marconi *, O. Serang *, R. Silva*, M. Vieira *, R. Vicentini *, E. Costa*
MeSH headings : Alleles; Genome, Plant / genetics; Genotype; Polymorphism, Single Nucleotide / genetics; Polyploidy; Saccharum / genetics
TL;DR:
This study demonstrates for the first time a successful genetic analysis in a highly polyploid genome (sugarcane) by the quantitative analysis of single-nucleotide polymorphism (SNP) allelic dosage and the application of a new data analysis framework.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2012 journal article
A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers
BMC Genetics, 13(1).
Contributors: A. Palhares*, T. Rodrigues-Morais*, M. Van Sluys *, D. Domingues *, W. Maccheroni Jr, H. Jordão Jr, A. Souza *, T. Marconi *
author keywords: Saccharum spp; AFLP; EST-SSR; Retrotransposon-based markers; Single-dose markers; Integrated genetic map; Marker distribution
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Chromosome Mapping / methods; DNA, Plant / genetics; Expressed Sequence Tags; Genetic Linkage; Genetic Markers; Multigene Family; Retroelements; Saccharum / genetics
TL;DR:
Results indicated the use of a NBS-profiling technique was efficient to develop retrotransposon-based markers in sugarcane, and the simultaneous maximum-likelihood estimates of linkage and linkage phase based strategies confirmed the suitability of its approach to estimate linkage, and construct the linkage map.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2012 conference paper
A novel method to construct genetic linkage maps in high autopolyploid species using hidden Markov models, with applications in sugarcane
International Plant & Animal Genome XX Conference. Poster presented at the International Plant & Animal Genome XX Conference, San Diego, CA, USA.
Event: International Plant & Animal Genome XX Conference at San Diego, CA, USA
Source: NC State University Libraries
Added: February 15, 2024
2012 journal article
Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids
PLoS ONE, 7(2), e30906.
Contributors: O. Serang *, * & A. Garcia *
Ed(s): F. Rapallo
MeSH headings : Algorithms; Bayes Theorem; Computational Biology / methods; Databases, Genetic; Genetic Loci / genetics; Genotyping Techniques / methods; Polymorphism, Single Nucleotide / genetics; Polyploidy; Saccharum / genetics; Software; Solanum tuberosum / genetics; Time Factors
TL;DR:
A graphical Bayesian model for SNP genotyping data is introduced that can infer genotypes even when the ploidy of the population is unknown and can be trivially adapted to use models that utilize prior information about any platform or species.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2012 journal article
Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences
Theoretical and Applied Genetics, 124(8), 1389–1402.
Contributors: P. Sabadin*, M. Malosetti *, M. Boer *, F. Tardin *, F. Santos *, C. Guimarães *, R. Gomide*, C. Andrade*
MeSH headings : Chromosome Mapping; Droughts; Environment; Flowers; Genetic Linkage; Genetic Markers / genetics; Genome; Geography; Models, Statistical; Phenotype; Plant Physiological Phenomena; Quantitative Trait Loci; Sorghum / genetics; Sorghum / growth & development; Water / chemistry
TL;DR:
The physical positions for markers in QTL regions projected on the sorghum genome suggest that the previously detected plant height QTL, Sb-HT9-1, and Dw2, in addition to the maturity gene, Ma5, had a major confounding impact on the expression of yield and stay green QTL.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2011 journal article
A mixed model QTL analysis for sugarcane multiple-harvest-location trial data
Theoretical and Applied Genetics, 124(5), 835–849.
Contributors: M. Pastina *, M. Malosetti *, R. Gazaffi *, * , G. Margarido *, K. Oliveira*, L. Pinto, A. Souza *, F. Eeuwijk *, A. Garcia *
author keywords: Polyploids; Outcrossing species; Integrated linkage map; QTL x E
MeSH headings : Brazil; Breeding / methods; Chromosome Mapping; Crosses, Genetic; Models, Genetic; Phenotype; Quantitative Trait Loci / genetics; Saccharum / chemistry; Saccharum / genetics; Saccharum / growth & development; Sucrose / analysis; Time Factors
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2011 journal article
Functional markers for gene mapping and genetic diversity studies in sugarcane
BMC Research Notes, 4(1).
Contributors: T. Marconi *, E. Costa*, H. Miranda*, M. Mancini *, C. Cardoso-Silva *, K. Oliveira*, L. Pinto, * , A. Garcia *, A. Souza *
TL;DR:
These EST-SSR markers presented in this work can be efficiently used for genetic mapping studies of segregating sugarcane populations and facilitate the QTL identification and marker-assisted selection due the association with functional regions of the genome.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2010 journal article
Mendelian inheritance, linkage and linkage disequilibrium in microsatellite loci of Copaifera langsdorffii Desf.
Conservation Genetics Resources, 2(1), 201–204.
Contributors: R. Tarazi *, A. Sebbenn *, * & R. Vencovsky*
author keywords: Tropical-tree; Microsatellite; Inheritance; Conservation
TL;DR:
Through the analysis of 28 open-pollinated (OP) progenies, the SSR loci revealed Mendelian inheritance and independent assortment in Copaifera langsdorffii, showing clear evidence that the eight microsatellite loci can be used without restriction in genetic diversity, mating system and parentage analysis.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2010 journal article
The Biotechnology Roadmap for Sugarcane Improvement
Tropical Plant Biology, 3(2), 75–87.
Contributors: C. Hotta *, C. Lembke *, D. Domingues *, E. Ochoa*, G. Cruz*, D. Melotto-Passarin*, T. Marconi *, M. Santos *
TL;DR:
The workshop explored present and future challenges for sugarcane improvement and its use as a sustainable bioenergy and biomaterial feedstock and summarizes the roadmap for the improvement of Sugarcane.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2009 journal article
Characterization of new polymorphic functional markers for sugarcane
Genome, 52(2), 191–209.
Contributors: K. Oliveira*, L. Pinto *, T. Marconi *, * , E. Ulian*, S. Chabregas*, M. Falco*, W. Burnquist*, A. Garcia *, A. Souza *
Ed(s): B. Golding
author keywords: sugarcane; simple sequence repeat (SSR); expressed sequence tag (EST); functional markers
MeSH headings : DNA, Plant / chemistry; Databases, Genetic; Expressed Sequence Tags; Microsatellite Repeats / genetics; Polymorphism, Genetic; Saccharum / genetics
TL;DR:
The development of new EST-SSR markers will have important implications for the genetic analysis and exploitation of the genetic resources of sugarcane and related species and will provide a more direct estimate of functional diversity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
10. Reduced Inequalities
(OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2009 journal article
Evaluation of algorithms used to order markers on genetic maps
Heredity, 103(6), 494–502.
Contributors: * , G. Margarido *, R. Vencovsky* & A. Garcia *
author keywords: multipoint estimates; seriation; rapid chain delineation; recombination counting and ordering; unidirectional growth
MeSH headings : Algorithms; Chromosome Mapping / methods; Computer Simulation; Genetic Linkage; Genetic Markers; Models, Genetic; Plants / genetics; Software
TL;DR:
Evaluating the efficiency of algorithms try (TRY), seriation (SER), rapid chain delineation (RCD), recombination counting and ordering (RECORD) and unidirectional growth (UG), as well as the criteria PARF, SARF and SALOD in the construction of genetic linkage maps shows that use of the algorithms TRY and SER associated to RIPPLE with criterion LHMC would provide better results.
(via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2020
2008 journal article
Comparison of algorithms rapid chain delineation and seriation, for the construction of genetic linkage maps,Comparação dos algoritmos delineação rápida em cadeia e seriação, para a construção de mapas genéticos
Pesquisa Agropecuaria Brasileira, 43(4), 505–512.
Source: ORCID
Added: January 28, 2024
Employment
Updated: January 29th, 2024 14:43
2021 - present
North Carolina State University Raleigh, North Carolina, US
Research Assistant Professor
Horticultural Science / Bioinfomatics Research Center
2018 - 2021
NC State University Raleigh, NC, US
Senior Research Scholar
Horticultural Science / Bioinfomatics Research Center
2016 - 2018
North Carolina State University Raleigh, NC, US
Postdoctoral Research Scholar
Horticultural Science
2012 - 2015
Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Departamento de Genética Piracicaba, SP, BR
Postdoctoral Research Scholar
Genetics
2014 - 2015
Purdue University West Lafayette, IN, US
Visit Research Scholar
Statistics
Education
Updated: August 30th, 2017 12:11
2008 - 2012
Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Departamento de Genética Piracicaba, SP, BR
PhD
Genetics
2006 - 2008
Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Departamento de Genética Piracicaba, SP, BR
Master
Genetics
2001 - 2006
Universidade de São Paulo Escola Superior de Agricultura Luiz de Queiroz Piracicaba, SP, BR
Agronomist
Genetics
Funding History
Funding history based on the linked ORCID record. Updated: October 24th, 2023 13:40
grant
August 1, 2023 - August 1, 2024
RTB Breeding: A Consolidated Investment
Bill & Melinda Gates Foundation
grant
January 1, 2022 - December 31, 2024
A genetics-based data analysis system for breeders in polyploid breeding programs
National Institute of Food and Agriculture
grant
October 1, 2019 - September 1, 2022
Sweetpotato Genetic Advance and Innovative Seed Systems
Bill and Melinda Gates Foundation
award
July 1, 2019 - June 1, 2020
Polyploid Genomic Tool Development
University Global Partnership Network (UGPN)
salary-award
January 1, 2016 - September 1, 2019
Genomic Tools for Sweetpotato Inprovement
Bill and Melinda Gates Foundation
grant
November 1, 2012 - November 1, 2015
QTL mapping in autopolyploids using SNPs, with applications in sugarcane
Fundação de Amparo à Pesquisa do Estado de São Paulo
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