Marcelo Mollinari

Discovery of a major QTL for resistance to Fusarium wilt ( Fusarium oxysporum f. sp. batatas ) in the hexaploid Covington sweetpotato

Fraher, S., Kinczyk, J., Siqueira Gesteira, G., Heim, C., Williamson, S., Olukolu, B. A., … Yencho, G. C. (2026, January 1). Crop Science, Vol. 1.

Genetic linkage mapping in Megathyrsus maximus (Jacq.) with multiple dosage markers

Siqueira Gesteira, G., Ferreira, G. C., Mollinari, M., Santos, M. F., Jank, L., Mendonça Vilela, M., … Garcia, A. A. F. (2025, July 16). G3 Genes Genomes Genetics, Vol. 8.

Linkage map construction and QTL mapping for morphological traits in Ipomoea trifida , a diploid sweetpotato relative

Mata, A. P. A., Gemenet, D. C., Diaz, F., David, M., Mosquera, V., Rosa, J. R. B. F., … Silva Pereira, G. (2025, September 1). The Plant Genome, Vol. 18.

MAPpoly (v. 0.3.3) Construction of genetic maps in diploids and autopolyploids with even ploidy levels in full-sib families

Mollinari, M., Gesteira, G. de S., Taniguti, C., Lau, J., Riera-Lizarazu, O., Pereira, G., … Ihaka, R. (2025, January 1). Ag Data Commons.

Phased chromosome-level assembly provides insight into the genome architecture of hexaploid sweetpotato

Wu, S., Sun, H., Zhao, X., Hamilton, J. P., Mollinari, M., Gesteira, G. D. S., … Fei, Z. (2025, August 8). Nature Plants, Vol. 8.

Reliability and Usefulness of Seedling Plant Data in Cassava Breeding

Phumichai, C., Ceballos, H., Pleeprom, P., Chomsuk, T., Kongsil, P., Wannarat, W., … Rojanaridpiched, C. (2025, September 8). Plants.

SIMpoly (V. 0.0.0.9) - Simulation of genetic marker data of individuals in mixed ploidy pedigreed populations

Mollinari, M. (2025, January 1). Ag Data Commons.

VIEWpoly (V 0.4.1): A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Taniguti, C. H., Gesteira, G. D. S., Lau, J., Angelin-Bonnet, O., Thomson, S. J., Pereira, G. D. S., … Mollinari, M. (2025, April 5). https://agdatacommons.nal.usda.gov/articles/software/VIEWpoly_V_0_4_1_A_Shiny_App_to_Visualize_Genetic_Maps_and_QTL_Analysis_in_Polyploid_Species/28509194

mappoly2 (V.2.0.0): Construction of genetic maps in interconnected full-sib autopolyploid families including mixed ploidy levels

Mollinari, M., Gesteira, G. de S., Taniguti, C., Pereira, G., Garcia, A. A. F., Zeng, Z.-B., … Ihaka, R. (2025, January 1). Ag Data Commons.

A Public Mid-Density Genotyping Platform for Hexaploid Sweetpotato (Ipomoea batatas [L.] Lam)

Zhao, D., Sandercock, A. M., Mejia-Guerra, M. K., Mollinari, M., Heller-Uszynska, K., Wadl, P. A., … Sheehan, M. J. (2024, August 9). Genes, Vol. 15.

Discovery of a major QTL for resistance to the guava root-knot nematode (Meloidogyne enterolobii) in ‘Tanzania’, an African landrace sweetpotato (Ipomoea batatas)

Fraher, S., Schwarz, T., Heim, C., Gesteira, G. D. S., Mollinari, M., Pereira, G. D. S., … Yencho, G. C. (2024, September 26). Theoretical and Applied Genetics, Vol. 137.

Prediction of blueberry sensory texture attributes by integrating multiple instrumental measurements

Postharvest Biology and Technology, 218, 113160.

A public mid-density genotyping platform for alfalfa (Medicago sativa L.)

Genetic Resources, 4(8), 55–63.

Advances in genomic characterization of Urochloa humidicola : exploring polyploid inheritance and apomixis

Costa Lima Moraes, A., Mollinari, M., Ferreira, R. C. U., Aono, A., Castro Lara, L. A., Pessoa-Filho, M., … Vigna, B. B. Z. (2023, September 3). (Vol. 9). Vol. 9.

Advances in genomic characterization of Urochloa humidicola: exploring polyploid inheritance and apomixis

Theoretical and Applied Genetics, 136(11).

Advances in the Development of Chromosome-Scale Haplotype-Resolved Genome Assemblies of Hexaploid Sweetpotatoes

International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.

Genetic Mapping in Interconnected Hexaploid Sweetpotato Populations

International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.

Selecting the Best Bioinformatic Pipeline for Evaluating Diploid and Auto-Tetraploid Garden Rose Genotype-by-Sequencing Data

International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.

Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Lau, J., Siqueira Gesteira, G., Paula Oliveira, T., … Garcia, A. A. F. (2022, November 25). BioRxiv, Vol. 11.

Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps

GigaScience, 12.

Polyploid Goes to Genomics

21st Century Pathology, 2(2), 113.

VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis

Journal of Open Source Software, 7(74), 4242.

VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis in

International Plant & Animal Genome XXIX Conference. Poster presented at the International Plant & Animal Genome XXIX Conference.

Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas)

Theoretical and Applied Genetics, 134(7), 1945–1955.

Meiosis in Polyploids and Implications for Genetic Mapping: A Review

Genes, 12(10), 1517.

Quantitative Trait Locus Mapping for Common Scab Resistance in a Tetraploid Potato Full-Sib Population

Silva Pereira, G., Mollinari, M., Qu, X., Thill, C., Zeng, Z.-B., Haynes, K., & Yencho, G. C. (2021, March 17). Plant Disease.

The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population

Heredity, 126(5), 817–830.

Characterization of Sweetpotato Inheritance Using Ultradense Multilocus Genetic Map

International Plant & Animal Genome XXVIII Conference. Poster presented at the International Plant & Animal Genome XXVIII Conference.

Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population

Genetics, 215(3), 579–595.

Quantitative trait locus mapping for common scab resistance in a tetraploid potato full-sib population

Silva Pereira, G., Mollinari, M., Qu, X., Thill, C., Zeng, Z.-B., Haynes, K., & Yencho, G. C. (2020, October 25). BioRxiv.

Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops

Theoretical and Applied Genetics, 133(12), 3345–3363.

fullsibQTL: an R package for QTL mapping in biparental populations of outcrossing species

Gazaffi, R., Amadeu, R. R., Mollinari, M., Rosa, J. R. B. F., Taniguti, C. H., Margarido, G. R. A., & Garcia, A. A. F. (2020, December 7). BioRxiv.

Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models

G3: Genes|Genomes|Genetics, 9(10), 3297–3314.

Multiple QTL mapping in autopolyploids: a random-effect model approach with application in a hexaploid sweetpotato full-sib population

Progress in the Implementation of Genomic Selection and Marker-Assisted Breeding in Sweetpotato

International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.

Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]

Theoretical and Applied Genetics, 133(1), 23–36.

Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping

G3: Genes|Genomes|Genetics, 10(1), 281–292.

B.Construction of an Ultradense Genetic Map in Hexaploid Sweetpotato

International Plant & Animal Genome XXVI Conference. Poster presented at the International Plant & Animal Genome XXVI Conference.

Construction of Genetic Maps in Complex Autopolyploids

International Conference in Quantitative Genetics 5. Poster presented at the International Conference in Quantitative Genetics 5, Madison, WI, USA.

Evidence of Allopolyploidy in Urochloa humidicola Based on Cytological Analysis and Genetic Linkage Mapping

PLOS ONE, 11(4), e0153764.

QTL mapping including codominant SNP markers with ploidy level information in a sugarcane progeny

Euphytica, 211(1), 1–16.

A model for quantitative trait loci mapping, linkage phase, and segregation pattern estimation for a full-sib progeny

Tree Genetics & Genomes, 10(4), 791–801.

A new method to construct genetic maps in complex autopolyploids using quantitative SNP genotyping

Kansas State Conference on Applied Statistics in Agriculture. Poster presented at the Kansas State Conference on Applied Statistics in Agriculture, Manhattan, KS, USA.

Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms

In Methods in Molecular Biology (Vol. 1245, pp. 215–241).

SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids

Scientific Reports, 3(1).

A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers

BMC Genetics, 13(1).

A novel method to construct genetic linkage maps in high autopolyploid species using hidden Markov models, with applications in sugarcane

International Plant & Animal Genome XX Conference. Poster presented at the International Plant & Animal Genome XX Conference, San Diego, CA, USA.

Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids

PLoS ONE, 7(2), e30906.

Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences

Theoretical and Applied Genetics, 124(8), 1389–1402.

A mixed model QTL analysis for sugarcane multiple-harvest-location trial data

Theoretical and Applied Genetics, 124(5), 835–849.

Functional markers for gene mapping and genetic diversity studies in sugarcane

BMC Research Notes, 4(1).

Mendelian inheritance, linkage and linkage disequilibrium in microsatellite loci of Copaifera langsdorffii Desf.

Conservation Genetics Resources, 2(1), 201–204.

The Biotechnology Roadmap for Sugarcane Improvement

Tropical Plant Biology, 3(2), 75–87.

Characterization of new polymorphic functional markers for sugarcane

Genome, 52(2), 191–209.

Evaluation of algorithms used to order markers on genetic maps

Heredity, 103(6), 494–502.

Comparação dos algoritmos delineação rápida em cadeia e seriação, para a construção de mapas genéticos

Mollinari, M., Margarido, G. R. A., & Garcia, A. A. F. (2008, April 1). Pesquisa Agropecuária Brasileira, Vol. 43, pp. 505–512.