Marcelo Mollinari

Zhao, D., Mejia-Guerra, K. M., Mollinari, M., Samac, D., Irish, B., Heller-Uszynska, K., … Sheehan, M. J. (2023). A public mid-density genotyping platform for alfalfa (Medicago sativa L.). Genetic Resources, 4(8), 55–63. https://doi.org/10.46265/genresj.emor6509

da Costa Lima Moraes, A., Mollinari, M., Ferreira, R. C. U., Aono, A., de Castro Lara, L. A., Pessoa-Filho, M., … Vigna, B. B. Z. (2023). Advances in genomic characterization of Urochloa humidicola: exploring polyploid inheritance and apomixis. Theoretical and Applied Genetics, 136(11). https://doi.org/10.1007/s00122-023-04485-w

C. L. Moraes Aline, Mollinari, M., Ulbricht, R., Aono, A., Castro Lara, L. A., Pessoa-Filho, M., … Vigna, B. (2023, September 3). Advances in genomic characterization of<i>Urochloa humidicola</i>: exploring polyploid inheritance and apomixis (Vol. 9). Vol. 9. https://doi.org/10.1101/2023.08.31.555743

Wu, S., Sun, H., Kitavi, M., Hamilton, J. P., Gesteira, G. S., Mollinari, M., … Fei, Z. (2023). Advances in the Development of Chromosome-Scale Haplotype-Resolved Genome Assemblies of Hexaploid Sweetpotatoes. International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.

Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Lau, J., Gesteira, G. de S., Oliveira, T. de P., … Garcia, A. A. F. (2023). Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps. GigaScience, 12. https://doi.org/10.1093/gigascience/giad092

Gesteira, G. S., Mollinari, M., Pereira, G. da S., Olukolu, B. A., Oloka, B. M., Yencho, C., & Zeng, Z.-B. (2023). Genetic Mapping in Interconnected Hexaploid Sweetpotato Populations. International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.

Taniguti, C. H., Taniguti, L. M., Lau, J., Garcia, A. A. F., Mollinari, M., Byrne, D., & Riera-Lizarazu, O. (2023). Selecting the Best Bioinformatic Pipeline for Evaluating Diploid and Auto-Tetraploid Garden Rose Genotype-by-Sequencing Data. International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference.

Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Lau, J., Gesteira, G. D. S., Paula Oliveira, T., … Garcia, A. A. F. (2022). Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks. BioRxiv, Vol. 11. https://doi.org/10.1101/2022.11.24.517847

Zeng, Z.-B., Mollinari, M., da Silva Pereira, G., Olukolu, B. A., & Yencho, G. C. (2022). Polyploid Goes to Genomics. 21st Century Pathology, 2(2), 113.

Taniguti, C. H., de Siqueira Gesteira, G., Lau, J., da Silva Pereira, G., Zeng, Z.-B., Byrne, D., … Mollinari, M. (2022). VIEWpoly: a visualization tool to integrate and explore
results of polyploid genetic analysis. Journal of Open Source Software, 7(74), 4242. https://doi.org/10.21105/joss.04242

Taniguti, C. H., Gesteira, G. de S., Lau, J., Pereira, G. da S., Zeng, Z.-B., Byrne, D. H., … Mollinari, M. (2022). VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis in. International Plant & Animal Genome XXIX Conference. Poster presented at the International Plant & Animal Genome XXIX Conference.

Oloka, B. M., da Silva Pereira, G., Amankwaah, V. A., Mollinari, M., Pecota, K. V., Yada, B., … Yencho, G. C. (2021). Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas). Theoretical and Applied Genetics, 134(7), 1945–1955. https://doi.org/10.1007/s00122-021-03797-z

Soares, N. R., Mollinari, M., Oliveira, G. K., Pereira, G. S., & Vieira, M. L. C. (2021). Meiosis in Polyploids and Implications for Genetic Mapping: A Review. Genes, 12(10), 1517. https://doi.org/10.3390/genes12101517

da Silva Pereira, G., Mollinari, M., Qu, X., Thill, C., Zeng, Z.-B., Haynes, K., & Yencho, G. C. (2021). Quantitative Trait Locus Mapping for Common Scab Resistance in a Tetraploid Potato Full-Sib Population. Plant Disease, 105(10), 3048–3054. https://doi.org/10.1094/PDIS-10-20-2270-RE

da Silva Pereira, G., Mollinari, M., Schumann, M. J., Clough, M. E., Zeng, Z.-B., & Yencho, G. C. (2021). The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population. Heredity, 126(5), 817–830. https://doi.org/10.1038/s41437-021-00416-x

Mollinari, M., Bode, A. O., Pereira, G. S., Gemenet, D. C., Khan, A., Yencho, G., & Zeng, Z. B. (2020). Characterization of Sweetpotato Inheritance Using Ultradense Multilocus Genetic Map. International Plant & Animal Genome XXVIII Conference. Poster presented at the International Plant & Animal Genome XXVIII Conference.

da Silva Pereira, G., Gemenet, D. C., Mollinari, M., Olukolu, B. A., Wood, J. C., Diaz, F., … Zeng, Z.-B. (2020). Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population. Genetics, 215(3), 579–595. https://doi.org/10.1534/genetics.120.303080

Silva Pereira, G., Mollinari, M., Qu, X., Thill, C., Zeng, Z.-B., Haynes, K., & Yencho, G. C. (2020). Quantitative trait locus mapping for common scab resistance in a tetraploid potato full-sib population. BioRxiv, Vol. 10. https://doi.org/10.1101/2020.10.24.353557

Gemenet, D. C., Lindqvist-Kreuze, H., De Boeck, B., da Silva Pereira, G., Mollinari, M., Zeng, Z.-B., … Campos, H. (2020). Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops. Theoretical and Applied Genetics, 133(12), 3345–3363. https://doi.org/10.1007/s00122-020-03673-2

Gazaffi, R., Amadeu, R. R., Mollinari, M., Rosa, J. R. B. F., Taniguti, C. H., Margarido, G. R. A., & Garcia, A. A. F. (2020). fullsibQTL: An R package for QTL mapping in biparental populations of outcrossing species. BioRxiv. https://doi.org/10.1101/2020.12.04.412262

Mollinari, M., & Garcia, A. A. F. (2019). Linkage Analysis and Haplotype Phasing in Experimental Autopolyploid Populations with High Ploidy Level Using Hidden Markov Models. G3&#58; Genes|Genomes|Genetics, 9(10), 3297–3314. https://doi.org/10.1534/g3.119.400378

Silva Pereira, G. da, Gemenet, D. C., Mollinari, M., Olukolu, B. A., Wood, J. C., Diaz, F., … Zeng, Z.-B. (2019). Multiple QTL mapping in autopolyploids: a random-effect model approach with application in a hexaploid sweetpotato full-sib population. https://doi.org/10.1101/622951

Oloka, B. M., Pereira, G. da S., Mollinari, M., Gesteira, G. S., Fraher, S., Pecota, K., … Yencho, C. (2019). Progress in the Implementation of Genomic Selection and Marker-Assisted Breeding in Sweetpotato. International Plant & Animal Genome 30 Conference. Poster presented at the International Plant & Animal Genome 30 Conference, San Diego, CA.

Gemenet, D. C., da Silva Pereira, G., De Boeck, B., Wood, J. C., Mollinari, M., Olukolu, B. A., … Buell, C. R. (2019). Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]. Theoretical and Applied Genetics, 133(1), 23–36. https://doi.org/10.1007/s00122-019-03437-7

Mollinari, M., Olukolu, B. A., Pereira, G. da S., Khan, A., Gemenet, D., Yencho, G. C., & Zeng, Z.-B. (2019). Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping. G3&#58; Genes|Genomes|Genetics, 10(1), 281–292. https://doi.org/10.1534/g3.119.400620

Mollinari, M., Bode, A., Pereira, G. S., Gemenet, D. C., Khan, A., Kitavi, M. N., … Zeng, Z. (2018). B.Construction of an Ultradense Genetic Map in Hexaploid Sweetpotato. International Plant & Animal Genome XXVI Conference. Poster presented at the International Plant & Animal Genome XXVI Conference.

Mollinari, M., Pereira, G. S., Shumann, M., Yencho, C., Zeng, Z.-B., & Garcia, A. A. F. (2016). Construction of Genetic Maps in Complex Autopolyploids. International Conference in Quantitative Genetics 5. Poster presented at the International Conference in Quantitative Genetics 5, Madison, WI, USA.

Vigna, B. B. Z., Santos, J. C. S., Jungmann, L., do Valle, C. B., Mollinari, M., Pastina, M. M., … Souza, A. P. (2016). Evidence of Allopolyploidy in Urochloa humidicola Based on Cytological Analysis and Genetic Linkage Mapping. PLOS ONE, 11(4), e0153764. https://doi.org/10.1371/journal.pone.0153764

Costa, E. A., Anoni, C. O., Mancini, M. C., Santos, F. R. C., Marconi, T. G., Gazaffi, R., … Garcia, A. A. F. (2016). QTL mapping including codominant SNP markers with ploidy level information in a sugarcane progeny. Euphytica, 211(1), 1–16. https://doi.org/10.1007/s10681-016-1746-7

Gazaffi, R., Margarido, G. R. A., Pastina, M. M., Mollinari, M., & Garcia, A. A. F. (2014). A model for quantitative trait loci mapping, linkage phase, and segregation pattern estimation for a full-sib progeny. Tree Genetics & Genomes, 10(4), 791–801. https://doi.org/10.1007/s11295-013-0664-2

Mollinari, M., Garcia, A. A. F., Craig, B., & Doerge, R. W. (2014). A new method to construct genetic maps in complex autopolyploids using quantitative SNP genotyping. Kansas State Conference on Applied Statistics in Agriculture. Poster presented at the Kansas State Conference on Applied Statistics in Agriculture, Manhattan, KS, USA.

Mollinari, M., & Serang, O. (2014). Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms. In Methods in Molecular Biology (Vol. 1245, pp. 215–241). https://doi.org/10.1007/978-1-4939-1966-6_17

Garcia, A. A. F., Mollinari, M., Marconi, T. G., Serang, O. R., Silva, R. R., Vieira, M. L. C., … Souza, A. P. (2013). SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Scientific Reports, 3(1). https://doi.org/10.1038/srep03399

Palhares, A. C., Rodrigues-Morais, T. B., Van Sluys, M.-A., Domingues, D. S., Maccheroni, W., Jr, Jordão, H., Jr, … Vieira, M. L. C. (2012). A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics, 13(1). https://doi.org/10.1186/1471-2156-13-51

Mollinari, M., Marconi, T. G., Mancini, M. C., Costa, E. A., Pinto, L. R., Souza, A. P., & Garcia, A. A. F. (2012). A novel method to construct genetic linkage maps in high autopolyploid species using hidden Markov models, with applications in sugarcane. International Plant & Animal Genome XX Conference. Poster presented at the International Plant & Animal Genome XX Conference, San Diego, CA, USA.

Serang, O., Mollinari, M., & Garcia, A. A. F. (2012). Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids. PLoS ONE, 7(2), e30906. https://doi.org/10.1371/journal.pone.0030906

Sabadin, P. K., Malosetti, M., Boer, M. P., Tardin, F. D., Santos, F. G., Guimarães, C. T., … Magalhaes, J. V. (2012). Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences. Theoretical and Applied Genetics, 124(8), 1389–1402. https://doi.org/10.1007/s00122-012-1795-9

Pastina, M. M., Malosetti, M., Gazaffi, R., Mollinari, M., Margarido, G. R. A., Oliveira, K. M., … Garcia, A. A. F. (2011). A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theoretical and Applied Genetics, 124(5), 835–849. https://doi.org/10.1007/s00122-011-1748-8

Marconi, T. G., Costa, E. A., Miranda, H. R. C. A. N., Mancini, M. C., Cardoso-Silva, C. B., Oliveira, K. M., … Souza, A. P. (2011). Functional markers for gene mapping and genetic diversity studies in sugarcane. BMC Research Notes, 4(1). https://doi.org/10.1186/1756-0500-4-264

Tarazi, R., Sebbenn, A. M., Mollinari, M., & Vencovsky, R. (2010). Mendelian inheritance, linkage and linkage disequilibrium in microsatellite loci of Copaifera langsdorffii Desf. Conservation Genetics Resources, 2(1), 201–204. https://doi.org/10.1007/s12686-010-9230-5

Hotta, C. T., Lembke, C. G., Domingues, D. S., Ochoa, E. A., Cruz, G. M. Q., Melotto-Passarin, D. M., … Souza, G. M. (2010). The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology, 3(2), 75–87. https://doi.org/10.1007/s12042-010-9050-5

Oliveira, K. M., Pinto, L. R., Marconi, T. G., Mollinari, M., Ulian, E. C., Chabregas, S. M., … Souza, A. P. (2009). Characterization of new polymorphic functional markers for sugarcane. Genome, 52(2), 191–209. https://doi.org/10.1139/g08-105

Mollinari, M., Margarido, G. R. A., Vencovsky, R., & Garcia, A. A. F. (2009). Evaluation of algorithms used to order markers on genetic maps. Heredity, 103(6), 494–502. https://doi.org/10.1038/hdy.2009.96

Mollinari, M., Margarido, G. R. A., & Garcia, A. A. F. (2008). Comparison of algorithms rapid chain delineation and seriation, for the construction of genetic linkage maps,Comparação dos algoritmos delineação rápida em cadeia e seriação, para a construção de mapas genéticos. Pesquisa Agropecuaria Brasileira, 43(4), 505–512. https://doi.org/10.1590/S0100-204X2008000400009