Works (24)

2020 journal article

Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability

PLOS ONE, 15(3).

By: F. Mannino, S. Wisotsky, S. Pond & S. Muse

Source: Web Of Science
Added: June 15, 2020

2020 journal article

HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies

MOLECULAR BIOLOGY AND EVOLUTION, 37(1), 295–299.

By: S. Pond, A. Poon, R. Velazquez, S. Weaver, N. Hepler, B. Murrell, S. Shank, B. Magalis ...

Source: Web Of Science
Added: March 10, 2020

2018 journal article

Datamonkey 2.0: A modern web application for characterizing selective and other evolutionary processes

Molecular Biology and Evolution, 35(3), 773–777.

By: S. Weaver, S. Shank, S. Spielman, M. Li, S. Muse & S. Pond

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata

Journal of Molecular Evolution, 73(5-6), 266–272.

By: L. Katz, J. DeBerardinis, M. Hall, A. Kovner, M. Dunthorn & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Benchmarking multi-rate codon models

PLoS One, 5(7).

By: W. Delport, K. Scheffler, M. Gravenor, S. Muse & S. Pond

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Codontest: modeling amino acid substitution preferences in coding sequences

PLoS Computational Biology, 6(8).

By: W. Delport, K. Scheffler, G. Botha, M. Gravenor, S. Muse & S. Pond

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Correcting the bias of empirical frequency parameter estimators in codon models

PLoS One, 5(7).

By: S. Pond, W. Delport, S. Muse & K. Scheffler

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Genomic analysis of closely related astroviruses

Journal of Virology, 82(10), 5099–5103.

By: E. Strain, L. Kelley, S. Schultz-Cherry, S. Muse & M. Koci

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Evolutionary model selection with a genetic algorithm: A case study using stem RNA

Molecular Biology and Evolution, 24(1), 159–170.

By: S. Pond, F. Mannino, M. Gravenor, S. Muse & S. Frost

Source: NC State University Libraries
Added: August 6, 2018

2006 journal article

Genome architecture drives protein evolution in ciliates

Molecular Biology and Evolution, 23(9), 1681–1687.

By: R. Zufall, C. McGrath, S. Muse & L. Katz

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

HyPhy: hypothesis testing using phylogenies

Bioinformatics, 21(5), 676–679.

By: S. Pond, S. Frost & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Positively selected sites in the Arabidopsis receptor-like kinase gene family

Journal of Molecular Evolution, 61(3), 325–332.

By: E. Strain & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

PowerMarker: an integrated analysis environment for genetic marker analysis

Bioinformatics, 21(9), 2128–2129.

By: K. Liu & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Site-to-site variation of synonymous substitution rates

Molecular Biology and Evolution, 22(12), 2375–2385.

By: S. Pond & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2004 book

A primer of genome science (2nd ed.)

Sunderland, MA: Sinauer Associates.

By: G. Gibson & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Column sorting: Rapid calculation of the phylogenetic likelihood function

Systematic Biology, 53(5), 685–692.

By: S. Pond & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes

Molecular Biology and Evolution, 21(3), 555–562.

By: L. Katz, J. Bornstein, E. Lasek-Nesselquist & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

Development of a maize molecular evolutionary genomic database

Comparative and Functional Genomics, 4(2), 246–249.

By: C. Du, E. Buckler & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites

Genetics, 165(4), 2117–2128.

By: K. Liu, M. Goodman, S. Muse, J. Smith, E. Buckler & J. Doebley

Source: NC State University Libraries
Added: August 6, 2018

2002 book

A primer of genome science

Sunderland, MA: Sinauer.

By: G. Gibson & S. Muse

Source: NC State University Libraries
Added: August 6, 2018

2002 journal article

Evolution of duplicated alpha-tubulin genes in ciliates

Evolution, 56(6), 1110–1122.

By: R. Israel, S. Pond, S. Muse & L. Katz

Source: NC State University Libraries
Added: August 6, 2018

2002 journal article

Evolutionary genomics of maize

Maize Genetics Cooperation Newsletter, (76), 86.

By: E. Buckler, J. Doebley, B. Gaut, M. Goodman, S. Kresovich, S. Muse, B. Weir

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Examining rates and patterns of nucleotide substitution in plants

Plant Molecular Biology, 42(1), 25–43.

By: S. Muse

Source: NC State University Libraries
Added: August 6, 2018

1994 journal article

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

Molecular Biology and Evolution, 11(5), 715.

By: S. Muse & B. Gaut

Source: NC State University Libraries
Added: August 6, 2018