Spencer V Muse
Is this your profile?
Claim your Citation Index profile in order to display more information about you and gain access to Libraries services. Just create or connect your ORCID iD.
Create or connect your ORCID iD
Works (25)
Updated: April 11th, 2023 10:13
2020 journal article
Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability
PLOS ONE, 15(3).
journals.plos.org (publisher PDF)
Source: Web Of Science
Added: June 15, 2020
2020 journal article
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
MOLECULAR BIOLOGY AND EVOLUTION, 37(1), 295–299.
author keywords: evolutionary analysis; natural selection; hypothesis testing; statistical inference; software engineering
Source: Web Of Science
Added: March 10, 2020
2020 journal article
Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril
MOLECULAR BIOLOGY AND EVOLUTION, 37(8), 2430–2439.
author keywords: evolutionary model; synonymous rate variation; codon model; episodic selection
Source: Web Of Science
Added: October 19, 2020
2018 journal article
Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes
MOLECULAR BIOLOGY AND EVOLUTION, 35(3), 773–777.
author keywords: natural selection; statistical methods; web application; recombination; evolutionary inference
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Heterogeneous Rates of Molecular Evolution Among Cryptic Species of the Ciliate Morphospecies Chilodonella uncinata
JOURNAL OF MOLECULAR EVOLUTION, 73(5-6), 266–272.
author keywords: Cryptic species; Molecular evolution; Genome architecture; Ciliate
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Benchmarking multi-rate codon models
PLoS One, 5(7).
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Codontest: modeling amino acid substitution preferences in coding sequences
PLoS Computational Biology, 6(8).
Source: NC State University Libraries
Added: August 6, 2018
2010 journal article
Correcting the bias of empirical frequency parameter estimators in codon models
PLoS One, 5(7).
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Genomic analysis of closely related astroviruses
JOURNAL OF VIROLOGY, 82(10), 5099–5103.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2007 journal article
Evolutionary model selection with a genetic algorithm: A case study using stem RNA
MOLECULAR BIOLOGY AND EVOLUTION, 24(1), 159–170.
author keywords: RNA sequence evolution; secondary structure; model selection; genetic algorithms; multimodel inference
Source: Web Of Science
Added: August 6, 2018
2006 journal article
Genome architecture drives protein evolution in ciliates
MOLECULAR BIOLOGY AND EVOLUTION, 23(9), 1681–1687.
author keywords: genome evolution; genome architecture; protein evolution; ciliate evolution
Source: Web Of Science
Added: August 6, 2018
2005 journal article
HyPhy: hypothesis testing using phylogenies
BIOINFORMATICS, 21(5), 676–679.
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Positively selected sites in the Arabidopsis receptor-like kinase gene family
JOURNAL OF MOLECULAR EVOLUTION, 61(3), 325–332.
author keywords: receptor-like kinase; positive selection; gene family; leucine-rich repeat
Source: Web Of Science
Added: August 6, 2018
2005 journal article
PowerMarker: an integrated analysis environment for genetic marker analysis
BIOINFORMATICS, 21(9), 2128–2129.
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Site-to-site variation of synonymous substitution rates
MOLECULAR BIOLOGY AND EVOLUTION, 22(12), 2375–2385.
author keywords: synonymous substitution rate; positive selection; molecular evolution; codon model; model selection
Source: Web Of Science
Added: August 6, 2018
2004 book
A primer of genome science (2nd ed.)
Sunderland, MA: Sinauer Associates.
Source: NC State University Libraries
Added: August 6, 2018
2004 journal article
Column sorting: Rapid calculation of the phylogenetic likelihood function
SYSTEMATIC BIOLOGY, 53(5), 685–692.
author keywords: DNA sequence; graph theory; likelihood; phylogeny; traveling salesman problem
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes
Molecular Biology and Evolution, 21(3), 555–562.
Source: NC State University Libraries
Added: August 6, 2018
2003 article
Development of a maize molecular evolutionary genomic database
Du, C. G., Buckler, E., & Muse, S. (2003, April). COMPARATIVE AND FUNCTIONAL GENOMICS, Vol. 4, pp. 246–249.
author keywords: database; maize; genome; evolution; germplasm; phenotype; SSR; DNA sequence
Source: Web Of Science
Added: August 6, 2018
2003 journal article
Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
Genetics, 165(4), 2117–2128.
Source: NC State University Libraries
Added: August 6, 2018
2002 book
A primer of genome science
Sunderland, MA: Sinauer.
Source: NC State University Libraries
Added: August 6, 2018
2002 journal article
Evolution of duplicated alpha-tubulin genes in ciliates
Evolution, 56(6), 1110–1122.
Source: NC State University Libraries
Added: August 6, 2018
2002 journal article
Evolutionary genomics of maize
Maize Genetics Cooperation Newsletter, (76), 86.
Source: NC State University Libraries
Added: August 6, 2018
2000 journal article
Examining rates and patterns of nucleotide substitution in plants
PLANT MOLECULAR BIOLOGY, 42(1), 25–43.
author keywords: chloroplast genes; maximum likelihood; molecular clocks; nucleotide substitution models; rates of molecular evolution
Source: Web Of Science
Added: August 6, 2018
1994 journal article
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
Molecular Biology and Evolution, 11(5), 715.
Source: NC State University Libraries
Added: August 6, 2018
