@article{amses_simmons_longcore_mondo_seto_jeronimo_bonds_quandt_davis_chang_et al._2022, title={Diploid-dominant life cycles characterize the early evolution of Fungi}, volume={119}, ISSN={["1091-6490"]}, DOI={10.1073/pnas.2116841119}, number={36}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, author={Amses, Kevin R. and Simmons, D. Rabern and Longcore, Joyce E. and Mondo, Stephen J. and Seto, Kensuke and Jeronimo, Gustavo H. and Bonds, Anne E. and Quandt, C. Alisha and Davis, William J. and Chang, Ying and et al.}, year={2022}, month={Sep} }
 @article{lin_buchler_2022, title={Gene expression noise accelerates the evolution of a biological oscillator}, volume={3}, url={https://doi.org/10.1101/2022.03.21.485207}, DOI={10.1101/2022.03.21.485207}, publisher={Cold Spring Harbor Laboratory}, author={Lin, Yen Ting and Buchler, Nicolas E.}, year={2022}, month={Mar} }
 @article{zhang_ho_buchler_gordan_2021, title={Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions}, volume={31}, ISSN={["1549-5469"]}, url={https://doi.org/10.1101/gr.275145.120}, DOI={10.1101/gr.275145.120}, number={7}, journal={GENOME RESEARCH}, publisher={Cold Spring Harbor Laboratory}, author={Zhang, Yuning and Ho, Tiffany D. and Buchler, Nicolas E. and Gordan, Raluca}, year={2021}, month={Jul}, pages={1216-+} }
 @article{medina_buchler_2020, title={Chytrid fungi.}, volume={5}, url={http://europepmc.org/abstract/med/32428492}, DOI={10.1016/j.cub.2020.02.076}, journal={Current biology : CB}, author={Medina, EM and Buchler, NE}, year={2020}, month={May} }
 @article{medina_robinson_bellingham-johnstun_ianiri_laplante_fritz-laylin_buchler_2020, title={Genetic transformation of Spizellomyces punctatus, a resource for studying chytrid biology and evolutionary cell biology}, url={https://doi.org/10.7554/eLife.52741}, DOI={10.7554/eLife.52741}, journal={eLife}, author={Medina, Edgar M and Robinson, Kristyn A and Bellingham-Johnstun, Kimberly and Ianiri, Giuseppe and Laplante, Caroline and Fritz-Laylin, Lillian K and Buchler, Nicolas E}, year={2020}, month={May} }
 @article{chen_lin_gallegos_hazlett_gomez-schiavon_yang_kalmeta_zhou_holtzman_gersbach_et al._2019, title={Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes}, volume={26}, ISSN={["2211-1247"]}, url={https://publons.com/publon/9042681/}, DOI={10.1016/j.celrep.2019.01.032}, number={5}, journal={CELL REPORTS}, author={Chen, Liang-Fu and Lin, Yen Ting and Gallegos, David A. and Hazlett, Mariah F. and Gomez-Schiavon, Mariana and Yang, Marty G. and Kalmeta, Breanna and Zhou, Allen S. and Holtzman, Liad and Gersbach, Charles A. and et al.}, year={2019}, month={Jan}, pages={1174-+} }
 @article{gomez-schiavon_buchler_2019, title={Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise}, volume={15}, ISSN={["1553-7358"]}, url={https://publons.com/publon/27274058/}, DOI={10.1371/journal.pcbi.1007364}, number={10}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Gomez-Schiavon, Mariana and Buchler, Nicolas E.}, year={2019}, month={Oct} }
 @misc{medina_walsh_buchler_2019, title={Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain}, volume={58-59}, ISSN={["1879-0380"]}, url={https://publons.com/publon/34754702/}, DOI={10.1016/j.gde.2019.08.004}, journal={CURRENT OPINION IN GENETICS & DEVELOPMENT}, author={Medina, Edgar M. and Walsh, Evan and Buchler, Nicolas E.}, year={2019}, month={Oct}, pages={103–110} }
 @article{lin_buchler_2019, title={Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts}, url={https://doi.org/10.1063/1.5110503}, DOI={10.1063/1.5110503}, journal={The Journal of Chemical Physics}, author={Lin, Yen Ting and Buchler, Nicolas E.}, year={2019}, month={Jul} }
 @article{gowans_bridgers_zhang_dronamraju_burnetti_king_thiengmany_shinsky_bhanu_garcia_et al._2019, title={Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression}, volume={76}, ISSN={["1097-4164"]}, url={https://publons.com/publon/34754701/}, DOI={10.1016/j.molcel.2019.09.029}, number={6}, journal={MOLECULAR CELL}, author={Gowans, Graeme J. and Bridgers, Joseph B. and Zhang, Jibo and Dronamraju, Raghuvar and Burnetti, Anthony and King, Devin A. and Thiengmany, Aline V and Shinsky, Stephen A. and Bhanu, Natarajan V and Garcia, Benjamin A. and et al.}, year={2019}, month={Dec}, pages={909-+} }
 @article{mwimba_karapetyan_liu_marques_mcginnis_buchler_dong_2018, title={Daily humidity oscillation regulates the circadian clock to influence plant physiology}, volume={9}, ISSN={["2041-1723"]}, url={https://publons.com/publon/34754703/}, DOI={10.1038/s41467-018-06692-2}, journal={NATURE COMMUNICATIONS}, author={Mwimba, Musoki and Karapetyan, Sargis and Liu, Lijing and Marques, Jorge and McGinnis, Erin M. and Buchler, Nicolas E. and Dong, Xinnian}, year={2018}, month={Oct} }
 @article{lin_buchler_2018, title={Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes}, volume={15}, url={https://doi.org/10.1098/rsif.2017.0804}, DOI={10.1098/rsif.2017.0804}, number={138}, journal={Journal of The Royal Society Interface}, publisher={The Royal Society}, author={Lin, Yen Ting and Buchler, Nicolas E.}, year={2018}, month={Jan}, pages={20170804} }
 @article{hendler_medina_buchler_bruin_aharoni_2018, title={The evolution of a G1/S transcriptional network in yeasts}, volume={64}, url={https://publons.com/publon/2047243/}, DOI={10.1007/S00294-017-0726-3}, number={1}, journal={Current Genetics}, publisher={Springer Nature}, author={Hendler, Adi and Medina, Edgar M. and Buchler, Nicolas E. and Bruin, Robertus A. M. and Aharoni, Amir}, year={2018}, pages={81–86} }
 @article{gómez-schiavon_chen_west_buchler_2017, title={BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells}, volume={18}, url={https://doi.org/10.1186/s13059-017-1297-9}, DOI={10.1186/s13059-017-1297-9}, number={1}, journal={Genome Biology}, publisher={Springer Science and Business Media LLC}, author={Gómez-Schiavon, Mariana and Chen, Liang-Fu and West, Anne E. and Buchler, Nicolas E.}, year={2017}, month={Dec} }
 @article{liban_medina_tripathi_sengupta_henry_buchler_rubin_2017, title={Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family}, volume={114}, url={https://doi.org/10.1073/pnas.1619170114}, DOI={10.1073/pnas.1619170114}, number={19}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Liban, Tyler J. and Medina, Edgar M. and Tripathi, Sarvind and Sengupta, Satyaki and Henry, R. William and Buchler, Nicolas E. and Rubin, Seth M.}, year={2017}, month={May}, pages={4942–4947} }
 @article{hendler_medina_kishkevich_abu-qarn_klier_buchler_bruin_aharoni_2017, title={Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness}, volume={13}, url={https://publons.com/publon/2047240/}, DOI={10.1371/journal.pgen.1006778}, number={5}, journal={PLOS Genetics}, publisher={Public Library of Science (PLoS)}, author={Hendler, Adi and Medina, Edgar M. and Kishkevich, Anastasiya and Abu-Qarn, Mehtap and Klier, Steffi and Buchler, Nicolas E. and Bruin, Robertus A. M. and Aharoni, Amir}, editor={Snyder, MichaelEditor}, year={2017}, month={May}, pages={e1006778} }
 @article{tanouchi_pai_park_huang_buchler_you_2017, title={Long-term growth data of Escherichia coli at a single-cell level}, url={https://doi.org/10.1038/sdata.2017.36}, DOI={10.1038/sdata.2017.36}, journal={Scientific Data}, author={Tanouchi, Yu and Pai, Anand and Park, Heungwon and Huang, Shuqiang and Buchler, Nicolas E. and You, Lingchong}, year={2017}, month={Mar} }
 @article{burnetti_aydin_buchler_2016, title={Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates.}, volume={27}, url={http://europepmc.org/abstract/med/26538026}, DOI={10.1091/mbc.e15-07-0454}, number={1}, journal={Molecular Biology of the Cell}, author={Burnetti, AJ and Aydin, M and Buchler, NE}, year={2016}, month={Jan}, pages={64–74,} }
 @article{medina_turner_gordân_skotheim_buchler_2016, title={Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi}, volume={5}, url={https://doi.org/10.7554/eLife.09492}, DOI={10.7554/eLife.09492}, journal={eLife}, publisher={eLife Sciences Organisation, Ltd.}, author={Medina, Edgar M and Turner, Jonathan J and Gordân, Raluca and Skotheim, Jan M and Buchler, Nicolas E}, year={2016}, month={May} }
 @article{schaap_barrantes_minx_sasaki_anderson_bénard_biggar_buchler_bundschuh_chen_et al._2016, title={The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling}, volume={8}, url={https://publons.com/publon/2047248/}, DOI={10.1093/GBE/EVV237}, number={1}, journal={Genome Biology and Evolution}, author={Schaap, P and Barrantes, I and Minx, P and Sasaki, N and Anderson, RW and Bénard, M and Biggar, KK and Buchler, NE and Bundschuh, R and Chen, X and et al.}, year={2016}, pages={109–125,} }
 @article{tanouchi_pai_park_huang_stamatov_buchler_you_2015, title={A noisy linear map underlies oscillations in cell size and gene expression in bacteria}, volume={523}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84937414579&partnerID=MN8TOARS}, DOI={10.1038/nature14562}, number={7560}, journal={Nature}, publisher={Nature Publishing Group}, author={Tanouchi, Yu and Pai, Anand and Park, Heungwon and Huang, Shuqiang and Stamatov, Rumen and Buchler, Nicolas E. and You, Lingchong}, year={2015}, month={Jun}, pages={357–360} }
 @article{rienzo_poveda-huertes_aydin_buchler_pascual-ahuir_proft_2015, title={Different mechanisms confer gradual control and memory at nutrient- and stress-regulated genes in yeast}, volume={35}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84944603437&partnerID=MN8TOARS}, DOI={10.1128/MCB.00729-15}, number={21}, journal={Molecular and Cellular Biology}, author={Rienzo, A. and Poveda-Huertes, D. and Aydin, S. and Buchler, N.E. and Pascual-Ahuir, A. and Proft, M.}, year={2015}, pages={3669–3683} }
 @article{zhou_wang_karapetyan_mwimba_marqués_buchler_dong_2015, title={Redox rhythm reinforces the circadian clock to gate immune response}, volume={523}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84936968103&partnerID=MN8TOARS}, DOI={10.1038/nature14449}, number={7561}, journal={Nature}, publisher={Nature Publishing Group}, author={Zhou, Mian and Wang, Wei and Karapetyan, Sargis and Mwimba, Musoki and Marqués, Jorge and Buchler, Nicolas E. and Dong, Xinnian}, year={2015}, month={Jun}, pages={472–476} }
 @article{karapetyan_buchler_e_2015, title={Role of DNA binding sites and slow unbinding kinetics in titration-based oscillators.}, volume={92}, url={http://europepmc.org/abstract/med/26764732}, DOI={10.1103/physreve.92.062712}, number={6}, journal={Physical Review E}, author={Karapetyan, S. and Buchler, N.E. and E, Physical}, year={2015}, month={Dec}, pages={062712,} }
 @article{mazo-vargas_park_aydin_buchler_2014, title={Measuring fast gene dynamics in single cells with time-lapse luminescence microscopy}, volume={25}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84908583872&partnerID=MN8TOARS}, DOI={10.1091/mbc.E14-07-1187}, number={22}, journal={Molecular Biology of the Cell}, author={Mazo-Vargas, A. and Park, H. and Aydin, M. and Buchler, N.E.}, year={2014}, pages={3699–3708} }
 @article{archambault_buchler_wilmes_jacobson_cross_2014, title={Two-Faced Cyclins with Eyes on the Targets}, volume={4}, url={https://publons.com/publon/2047264/}, DOI={10.4161/CC.4.1.1402}, number={1}, journal={Cell Cycle}, author={Archambault, V. and Buchler, N.E. and Wilmes, G.M. and Jacobson, M.D. and Cross, F.R.}, year={2014}, pages={125–130} }
 @article{tanouchi_pai_buchler_you_2012, title={Programming stress-induced altruistic death in engineered bacteria}, volume={8}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84870835870&partnerID=MN8TOARS}, DOI={10.1038/msb.2012.57}, journal={Molecular Systems Biology}, author={Tanouchi, Y. and Pai, A. and Buchler, N.E. and You, L.}, year={2012} }
 @article{buchler_bai_2011, title={Chromatin: Bind at your own RSC}, volume={21}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-79952802100&partnerID=MN8TOARS}, DOI={10.1016/j.cub.2011.01.060}, number={6}, journal={Current Biology}, author={Buchler, N.E. and Bai, L.}, year={2011} }
 @article{cross_buchler_skotheim_2011, title={Evolution of networks and sequences in eukaryotic cell cycle control}, volume={366}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-81055155486&partnerID=MN8TOARS}, DOI={10.1098/rstb.2011.0078}, number={1584}, journal={Philosophical Transactions of the Royal Society B: Biological Sciences}, author={Cross, F.R. and Buchler, N.E. and Skotheim, J.M.}, year={2011}, pages={3532–3544} }
 @article{buchler_cross_2009, title={Protein sequestration generates a flexible ultrasensitive response in a genetic network}, volume={5}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-67149138163&partnerID=MN8TOARS}, DOI={10.1038/msb.2009.30}, journal={Molecular Systems Biology}, author={Buchler, N.E. and Cross, F.R.}, year={2009} }
 @article{buchler_louis_2008, title={Molecular Titration and Ultrasensitivity in Regulatory Networks}, volume={384}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-56949098506&partnerID=MN8TOARS}, DOI={10.1016/j.jmb.2008.09.079}, number={5}, journal={Journal of Molecular Biology}, author={Buchler, N.E. and Louis, M.}, year={2008}, pages={1106–1119} }
 @article{fritz_buchler_hwa_gerland_2007, title={Designing sequential transcription logic: A simple genetic circuit for conditional memory}, volume={1}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-34548533820&partnerID=MN8TOARS}, DOI={10.1007/s11693-007-9006-8}, number={2}, journal={Systems and Synthetic Biology}, author={Fritz, G. and Buchler, N.E. and Hwa, T. and Gerland, U.}, year={2007}, pages={89–98} }
 @article{buchler_gerland_hwa_2005, title={Nonlinear protein degradation and the function of genetic circuits}, volume={102}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-22144443131&partnerID=MN8TOARS}, DOI={10.1073/pnas.0409553102}, number={27}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Buchler, N.E. and Gerland, U. and Hwa, T.}, year={2005}, pages={9559–9564} }
 @article{bintu_buchler_garcia_gerland_hwa_kondev_kuhlman_phillips_2005, title={Transcriptional regulation by the numbers: Applications}, volume={15}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-15744387380&partnerID=MN8TOARS}, DOI={10.1016/j.gde.2005.02.006}, number={2}, journal={Current Opinion in Genetics and Development}, author={Bintu, L. and Buchler, N.E. and Garcia, H.G. and Gerland, U. and Hwa, T. and Kondev, J. and Kuhlman, T. and Phillips, R.}, year={2005}, pages={125–135} }
 @article{bintu_buchler_garcia_gerland_hwa_kondev_phillips_2005, title={Transcriptional regulation by the numbers: Models}, volume={15}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-15744394192&partnerID=MN8TOARS}, DOI={10.1016/j.gde.2005.02.007}, number={2}, journal={Current Opinion in Genetics and Development}, author={Bintu, L. and Buchler, N.E. and Garcia, H.G. and Gerland, U. and Hwa, T. and Kondev, J. and Phillips, R.}, year={2005}, pages={116–124} }
 @article{archambault_buchler_wilmes_jacobson_cross_2005, title={Two-faced cyclins with eyes on the targets}, volume={4}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-14844287697&partnerID=MN8TOARS}, number={1}, journal={Cell Cycle}, author={Archambault, V. and Buchler, N.E. and Wilmes, G.M. and Jacobson, M.D. and Cross, F.R.}, year={2005}, pages={125–130} }
 @article{buchler_gerland_hwa_2003, title={On schemes of combinatorial transcription logic}, volume={100}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-0037965981&partnerID=MN8TOARS}, DOI={10.1073/pnas.0930314100}, number={9}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Buchler, N.E. and Gerland, U. and Hwa, T.}, year={2003}, pages={5136–5141} }
 @article{publons_2000, title={Surveying determinants of protein structure designability across different energy models and amino-acid alphabets: A consensus}, url={https://publons.com/publon/2047266/}, DOI={10.1063/1.480893}, journal={The Journal of Chemical Physics}, author={Publons}, year={2000} }
 @article{buchler_goldstein_1999, title={Effect of alphabet size and foldability requirements on protein structure designability}, volume={34}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-0032939920&partnerID=MN8TOARS}, DOI={10.1002/(SICI)1097-0134(19990101)34:1<113::AID-PROT9>3.0.CO;2-J}, number={1}, journal={Proteins: Structure, Function and Genetics}, author={Buchler, N.E.G. and Goldstein, R.A.}, year={1999}, pages={113–124} }
 @article{publons_1999, title={Universal correlation between energy gap and foldability for the random energy model and lattice proteins}, url={https://publons.com/publon/2047267/}, DOI={10.1063/1.479951}, journal={The Journal of Chemical Physics}, author={Publons}, year={1999} }
 @article{buchler_zuiderweg_wang_goldstein_1997, title={Protein Heteronuclear NMR Assignments Using Mean-Field Simulated Annealing}, volume={125}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-0031083526&partnerID=MN8TOARS}, DOI={10.1006/JMRE.1997.1106}, number={1}, journal={Journal of Magnetic Resonance}, author={Buchler, N.E.G. and Zuiderweg, E.R.P. and Wang, H. and Goldstein, R.A.}, year={1997}, pages={34–42} }
 @article{publons_1997, title={Protein Heteronuclear NMR Assignments Using Mean-Field Simulated Annealing}, url={https://publons.com/publon/2047265/}, DOI={10.1006/JMRE.1997.1106}, journal={Journal of Magnetic Resonance}, author={Publons}, year={1997} }
 @article{publons_1994, title={BL HERCULIS MODEL PULSATIONS .3. LIVERMORE OPACITIES}, url={https://publons.com/publon/51431452/}, journal={Astronomy & Astrophysics}, author={Publons}, year={1994} }