@article{zhang_ho_buchler_gordan_2021, title={Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions}, volume={31}, DOI={10.1101/gr.275145.120}, number={7}, journal={GENOME RESEARCH}, publisher={Cold Spring Harbor Laboratory}, author={Zhang, Yuning and Ho, Tiffany D. and Buchler, Nicolas E. and Gordan, Raluca}, year={2021}, month={Jul}, pages={1216–1229} }
 @article{medina_buchler_2020, title={Chytrid fungi.}, volume={5}, DOI={10.1016/j.cub.2020.02.076}, journal={Current biology : CB}, author={Medina, EM and Buchler, NE}, year={2020}, month={May} }
 @article{medina_robinson_bellingham-johnstun_ianiri_laplante_fritz-laylin_buchler_2020, title={Genetic transformation of Spizellomyces punctatus, a resource for studying chytrid biology and evolutionary cell biology}, DOI={10.7554/eLife.52741}, journal={eLife}, author={Medina, Edgar M and Robinson, Kristyn A and Bellingham-Johnstun, Kimberly and Ianiri, Giuseppe and Laplante, Caroline and Fritz-Laylin, Lillian K and Buchler, Nicolas E}, year={2020}, month={May} }
 @article{chen_lin_gallegos_hazlett_gomez-schiavon_yang_kalmeta_zhou_holtzman_gersbach_et al._2019, title={Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes}, volume={26}, DOI={10.1016/j.celrep.2019.01.032}, number={5}, journal={CELL REPORTS}, author={Chen, Liang-Fu and Lin, Yen Ting and Gallegos, David A. and Hazlett, Mariah F. and Gomez-Schiavon, Mariana and Yang, Marty G. and Kalmeta, Breanna and Zhou, Allen S. and Holtzman, Liad and Gersbach, Charles A. and et al.}, year={2019}, pages={1174-} }
 @article{gomez-schiavon_buchler_2019, title={Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise}, volume={15}, ISBN={1553-7358}, DOI={10.1371/journal.pcbi.1007364}, number={10}, journal={PLOS COMPUTATIONAL BIOLOGY}, author={Gomez-Schiavon, Mariana and Buchler, Nicolas E.}, year={2019}, month={Oct} }
 @misc{medina_walsh_buchler_2019, title={Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain}, volume={58-59}, ISBN={1879-0380}, DOI={10.1016/j.gde.2019.08.004}, journal={CURRENT OPINION IN GENETICS & DEVELOPMENT}, author={Medina, Edgar M. and Walsh, Evan and Buchler, Nicolas E.}, year={2019}, month={Oct}, pages={103–110} }
 @article{lin_buchler_2019, title={Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts}, DOI={10.1063/1.5110503}, journal={The Journal of Chemical Physics}, author={Lin, Yen Ting and Buchler, Nicolas E.}, year={2019}, month={Jul} }
 @article{gowans_bridgers_zhang_dronamraju_burnetti_king_thiengmany_shinsky_bhanu_garcia_et al._2019, title={Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression}, volume={76}, ISBN={1097-4164}, DOI={10.1016/j.molcel.2019.09.029}, number={6}, journal={MOLECULAR CELL}, author={Gowans, Graeme J. and Bridgers, Joseph B. and Zhang, Jibo and Dronamraju, Raghuvar and Burnetti, Anthony and King, Devin A. and Thiengmany, Aline V and Shinsky, Stephen A. and Bhanu, Natarajan V and Garcia, Benjamin A. and et al.}, year={2019}, pages={909-+} }
 @article{mwimba_karapetyan_liu_marques_mcginnis_buchler_dong_2018, title={Daily humidity oscillation regulates the circadian clock to influence plant physiology}, volume={9}, DOI={10.1038/s41467-018-06692-2}, journal={NATURE COMMUNICATIONS}, author={Mwimba, Musoki and Karapetyan, Sargis and Liu, Lijing and Marques, Jorge and McGinnis, Erin M. and Buchler, Nicolas and Dong, Xinnian}, year={2018} }
 @article{lin_buchler_2018, title={Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes}, volume={15}, DOI={10.1098/rsif.2017.0804}, number={138}, journal={Journal of The Royal Society Interface}, publisher={The Royal Society}, author={Lin, Yen Ting and Buchler, Nicolas E.}, year={2018}, month={Jan}, pages={20170804} }
 @article{gómez-schiavon_chen_west_buchler_2017, title={BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells}, volume={18}, DOI={10.1186/s13059-017-1297-9}, number={1}, journal={Genome Biology}, publisher={Springer Science and Business Media LLC}, author={Gómez-Schiavon, Mariana and Chen, Liang-Fu and West, Anne E. and Buchler, Nicolas E.}, year={2017}, month={Dec} }
 @article{liban_medina_tripathi_sengupta_henry_buchler_rubin_2017, title={Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family}, volume={114}, DOI={10.1073/pnas.1619170114}, number={19}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Liban, Tyler J. and Medina, Edgar M. and Tripathi, Sarvind and Sengupta, Satyaki and Henry, R. William and Buchler, Nicolas E. and Rubin, Seth M.}, year={2017}, month={May}, pages={4942–4947} }
 @article{hendler_medina_kishkevich_abu-qarn_klier_buchler_bruin_aharoni_2017, title={Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness}, volume={13}, DOI={10.1371/journal.pgen.1006778}, number={5}, journal={PLOS Genetics}, publisher={Public Library of Science (PLoS)}, author={Hendler, Adi and Medina, Edgar M. and Kishkevich, Anastasiya and Abu-Qarn, Mehtap and Klier, Steffi and Buchler, Nicolas E. and Bruin, Robertus A. M. and Aharoni, Amir}, editor={Snyder, MichaelEditor}, year={2017}, month={May}, pages={e1006778} }
 @article{tanouchi_pai_park_huang_buchler_you_2017, title={Long-term growth data of Escherichia coli at a single-cell level}, volume={4}, DOI={10.1038/sdata.2017.36}, number={1}, journal={Scientific Data}, publisher={Springer Science and Business Media LLC}, author={Tanouchi, Yu and Pai, Anand and Park, Heungwon and Huang, Shuqiang and Buchler, Nicolas E. and You, Lingchong}, year={2017}, month={Dec} }
 @article{hendler_medina_buchler_bruin_aharoni_2017, title={The evolution of a G1/S transcriptional network in yeasts}, volume={64}, DOI={10.1007/s00294-017-0726-3}, number={1}, journal={Current Genetics}, publisher={Springer Nature}, author={Hendler, Adi and Medina, Edgar M. and Buchler, Nicolas E. and Bruin, Robertus A. M. and Aharoni, Amir}, year={2017}, month={Jul}, pages={81–86} }
 @article{burnetti_aydin_buchler_2016, title={Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates.}, volume={27}, DOI={10.1091/mbc.e15-07-0454}, number={1}, author={Burnetti, AJ and Aydin, M and Buchler, NE}, year={2016}, month={Jan}, pages={64–74,} }
 @article{gómez-schiavon_buchler_2016, title={Epigenetic switching as a strategy for quick adaptation while constraining biochemical noise}, volume={8}, DOI={10.1101/072199}, publisher={Cold Spring Harbor Laboratory}, author={Gómez-Schiavon, Mariana and Buchler, Nicolas E}, year={2016}, month={Aug} }
 @article{medina_turner_gordân_skotheim_buchler_2016, title={Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi}, volume={5}, DOI={10.7554/eLife.09492}, journal={eLife}, publisher={eLife Sciences Organisation, Ltd.}, author={Medina, Edgar M and Turner, Jonathan J and Gordân, Raluca and Skotheim, Jan M and Buchler, Nicolas E}, year={2016}, month={May} }
 @article{tanouchi_pai_park_huang_stamatov_buchler_you_2015, title={A noisy linear map underlies oscillations in cell size and gene expression in bacteria}, volume={523}, DOI={10.1038/nature14562}, number={7560}, journal={Nature}, publisher={Nature Publishing Group}, author={Tanouchi, Yu and Pai, Anand and Park, Heungwon and Huang, Shuqiang and Stamatov, Rumen and Buchler, Nicolas E. and You, Lingchong}, year={2015}, month={Jun}, pages={357–360} }
 @article{rienzo_poveda-huertes_aydin_buchler_pascual-ahuir_proft_2015, title={Different mechanisms confer gradual control and memory at nutrient- and stress-regulated genes in yeast}, volume={35}, DOI={10.1128/MCB.00729-15}, number={21}, journal={Molecular and Cellular Biology}, author={Rienzo, A. and Poveda-Huertes, D. and Aydin, S. and Buchler, N.E. and Pascual-Ahuir, A. and Proft, M.}, year={2015}, pages={3669–3683} }
 @article{zhou_wang_karapetyan_mwimba_marqués_buchler_dong_2015, title={Redox rhythm reinforces the circadian clock to gate immune response}, volume={523}, DOI={10.1038/nature14449}, number={7561}, journal={Nature}, publisher={Nature Publishing Group}, author={Zhou, Mian and Wang, Wei and Karapetyan, Sargis and Mwimba, Musoki and Marqués, Jorge and Buchler, Nicolas E. and Dong, Xinnian}, year={2015}, month={Jun}, pages={472–476} }
 @article{karapetyan_buchler_e_2015, title={Role of DNA binding sites and slow unbinding kinetics in titration-based oscillators.}, volume={92}, DOI={10.1103/physreve.92.062712}, number={6}, author={Karapetyan, S. and Buchler, N.E. and E, Physical}, year={2015}, month={Dec}, pages={062712,} }
 @article{schaap_barrantes_minx_sasaki_anderson_bénard_biggar_buchler_bundschuh_chen_et al._2015, title={The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.}, volume={8}, DOI={10.1093/gbe/evv237}, number={1}, journal={Genome biology and evolution}, author={Schaap, P and Barrantes, I and Minx, P and Sasaki, N and Anderson, RW and Bénard, M and Biggar, KK and Buchler, NE and Bundschuh, R and Chen, X and et al.}, year={2015}, month={Nov}, pages={109–125,} }
 @article{mazo-vargas_park_aydin_buchler_2014, title={Measuring fast gene dynamics in single cells with time-lapse luminescence microscopy}, volume={25}, DOI={10.1091/mbc.E14-07-1187}, number={22}, journal={Molecular Biology of the Cell}, author={Mazo-Vargas, A. and Park, H. and Aydin, M. and Buchler, N.E.}, year={2014}, pages={3699–3708} }
 @article{tanouchi_pai_buchler_you_2012, title={Programming stress-induced altruistic death in engineered bacteria}, volume={8}, DOI={10.1038/msb.2012.57}, journal={Molecular Systems Biology}, author={Tanouchi, Y. and Pai, A. and Buchler, N.E. and You, L.}, year={2012} }
 @article{buchler_bai_2011, title={Chromatin: Bind at your own RSC}, volume={21}, DOI={10.1016/j.cub.2011.01.060}, number={6}, journal={Current Biology}, author={Buchler, N.E. and Bai, L.}, year={2011} }
 @article{cross_buchler_skotheim_2011, title={Evolution of networks and sequences in eukaryotic cell cycle control}, volume={366}, DOI={10.1098/rstb.2011.0078}, number={1584}, journal={Philosophical Transactions of the Royal Society B: Biological Sciences}, author={Cross, F.R. and Buchler, N.E. and Skotheim, J.M.}, year={2011}, pages={3532–3544} }
 @article{buchler_cross_2009, title={Protein sequestration generates a flexible ultrasensitive response in a genetic network}, volume={5}, DOI={10.1038/msb.2009.30}, journal={Molecular Systems Biology}, author={Buchler, N.E. and Cross, F.R.}, year={2009} }
 @article{buchler_louis_2008, title={Molecular Titration and Ultrasensitivity in Regulatory Networks}, volume={384}, DOI={10.1016/j.jmb.2008.09.079}, number={5}, journal={Journal of Molecular Biology}, author={Buchler, N.E. and Louis, M.}, year={2008}, pages={1106–1119} }
 @article{fritz_buchler_hwa_gerland_2007, title={Designing sequential transcription logic: A simple genetic circuit for conditional memory}, volume={1}, DOI={10.1007/s11693-007-9006-8}, number={2}, journal={Systems and Synthetic Biology}, author={Fritz, G. and Buchler, N.E. and Hwa, T. and Gerland, U.}, year={2007}, pages={89–98} }
 @article{buchler_gerland_hwa_2005, title={Nonlinear protein degradation and the function of genetic circuits}, volume={102}, DOI={10.1073/pnas.0409553102}, number={27}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Buchler, N.E. and Gerland, U. and Hwa, T.}, year={2005}, pages={9559–9564} }
 @article{bintu_buchler_garcia_gerland_hwa_kondev_kuhlman_phillips_2005, title={Transcriptional regulation by the numbers: Applications}, volume={15}, DOI={10.1016/j.gde.2005.02.006}, number={2}, journal={Current Opinion in Genetics and Development}, author={Bintu, L. and Buchler, N.E. and Garcia, H.G. and Gerland, U. and Hwa, T. and Kondev, J. and Kuhlman, T. and Phillips, R.}, year={2005}, pages={125–135} }
 @article{bintu_buchler_garcia_gerland_hwa_kondev_phillips_2005, title={Transcriptional regulation by the numbers: Models}, volume={15}, DOI={10.1016/j.gde.2005.02.007}, number={2}, journal={Current Opinion in Genetics and Development}, author={Bintu, L. and Buchler, N.E. and Garcia, H.G. and Gerland, U. and Hwa, T. and Kondev, J. and Phillips, R.}, year={2005}, pages={116–124} }
 @article{archambault_buchler_wilmes_jacobson_cross_2005, title={Two-faced cyclins with eyes on the targets}, volume={4}, number={1}, journal={Cell Cycle}, author={Archambault, V. and Buchler, N.E. and Wilmes, G.M. and Jacobson, M.D. and Cross, F.R.}, year={2005}, pages={125–130} }
 @article{buchler_gerland_hwa_2003, title={On schemes of combinatorial transcription logic}, volume={100}, DOI={10.1073/pnas.0930314100}, number={9}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Buchler, N.E. and Gerland, U. and Hwa, T.}, year={2003}, pages={5136–5141} }
 @article{buchler_goldstein_2000, title={Surveying determinants of protein structure designability across different energy models and amino-acid alphabets: A consensus}, volume={112}, number={5}, journal={Journal of Chemical Physics}, author={Buchler, N.E.G. and Goldstein, R.A.}, year={2000}, pages={2533–2547} }
 @article{buchler_goldstein_1999, title={Effect of alphabet size and foldability requirements on protein structure designability}, volume={34}, DOI={10.1002/(SICI)1097-0134(19990101)34:1<113::AID-PROT9>3.0.CO;2-J}, number={1}, journal={Proteins: Structure, Function and Genetics}, author={Buchler, N.E.G. and Goldstein, R.A.}, year={1999}, pages={113–124} }
 @article{buchler_goldstein_1999, title={Universal correlation between energy gap and foldability for the random energy model and lattice proteins}, volume={111}, number={14}, journal={Journal of Chemical Physics}, author={Buchler, N.E.G. and Goldstein, R.A.}, year={1999}, pages={6599–6609} }
 @article{buchler_zuiderweg_wang_goldstein_1997, title={Protein Heteronuclear NMR Assignments Using Mean-Field Simulated Annealing}, volume={125}, number={1}, journal={Journal of Magnetic Resonance}, author={Buchler, N.E.G. and Zuiderweg, E.R.P. and Wang, H. and Goldstein, R.A.}, year={1997}, pages={34–42} }