Nagiza Samatova

Works (66)

2018 article

An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting

ADVANCES IN DATA MINING: APPLICATIONS AND THEORETICAL ASPECTS (ICDM 2018).

By: R. Yang, J. He, M. Xu, H. Ni, P. Jones & N. Samatova

Source: Web Of Science
Added: June 17, 2019

2018 conference paper

Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model

In COMPUTATIONAL LINGUISTICS AND INTELLIGENT TEXT PROCESSING, CICLING 2017, PT II (Vol. 10762, pp. 195–210).

By: M. Xu, R. Yang, P. Jones & N. Samatova

Source: NC State University Libraries
Added: January 28, 2019

2018 journal article

Sex differences in cognitive decline in subjects with high likelihood of mild cognitive impairment due to Alzheimer's disease

Scientific Reports, 8.

By: D. Sohn, K. Shpanskaya, J. Lucas, J. Petrella, A. Saykin, R. Tanzi, N. Samatova, P. Doraiswamy

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

A A lifelong learning topic model structured using latent embeddings

In 2017 11th ieee international conference on semantic computing (icsc) (pp. 260–261).

By: M. Xu, R. Yang, S. Harenberg & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting

In ADVANCED DATA MINING AND APPLICATIONS, ADMA 2017 (Vol. 10604, pp. 595–607).

By: R. Yang, M. Xu, J. He, S. Ranshous & N. Samatova

Source: NC State University Libraries
Added: November 26, 2018

2017 conference paper

Leveraging External Knowledge for Phrase-based Topic Modeling

In 2017 conference on technologies and applications of artificial intelligence (taai) (pp. 29–32).

By: M. Xu, R. Yang, S. Ranshous, S. Li & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

Real time utility-based recommendation for revenue optimization via an adaptive online top-K high utility itemsets mining model

In 2017 13th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD).

By: R. Yang, M. Xu, P. Jones & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Theory-guided data science: A new paradigm for scientific discovery from data

IEEE Transactions on Knowledge and Data Engineering, 29(10), 2318–2331.

By: A. Karpatne, G. Atluri, J. Faghmous, M. Steinbach, A. Banerjee, A. Ganguly, S. Shekhar, N. Samatova, V. Kumar

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

Towards automatic linkage of knowledge worker's claims with associated evidence from screenshots

In 2017 Third IEEE International Conference on Big Data Computing Service and Applications (IEEE BigDataService 2017) (pp. 17–22).

By: P. Jones, D. Medd, S. Ramakrishnan, R. Shah, J. Keyton & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

AMRZone: A runtime AMR data sharing framework for scientific applications

In 2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid) (pp. 116–125).

By: W. Zhang, H. Tang, S. Harenberg, S. Byna, X. Zou, D. Devendran, D. Martin, K. Wu ...

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications

In 2016 IEEE International Conference on Big Data (Big Data) (pp. 1359–1366).

By: W. Zhang, H. Tang, S. Ranshous, S. Byna, D. Martin, K. Wu, B. Dong, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

In situ storage layout optimization for AMR spatio-temporal read accesses

In Proceedings 45th international conference on parallel processing - icpp 2016 (pp. 406–415).

By: H. Tang, S. Byna, S. Harenberg, W. Zhang, X. Zou, D. Martin, B. Dong, D. Devendran ...

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems

Theoretical Computer Science, 609, 434–442.

By: W. Chen, N. Samatova, M. Stallmann, W. Hendrix & W. Ying

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

Usage pattern-driven dynamic data layout reorganization

In 2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid) (pp. 356–365).

By: H. Tang, S. Byna, S. Harenberg, X. Zou, W. Zhang, K. Wu, B. Dong, O. Rubel ...

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

An An efficient algorithm for pairwise local alignment of protein interaction networks

Journal of Bioinformatics and Computational Biology, 13(2).

By: W. Chen, M. Schmidt, W. Tian, N. Samatova & S. Zhang

Source: NC State University Libraries
Added: August 6, 2018

2015 review

Anomaly detection in dynamic networks: A survey

Wiley Interdisciplinary Reviews: Computational Statistics.

By: S. Ranshous, S. Shen, D. Koutra, S. Harenberg, C. Faloutsos & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

Exploring memory hierarchy to improve scientific data read performance

In 2015 ieee international conference on cluster computing - cluster 2015 (pp. 66–69).

By: W. Zhang, H. Tang, X. Zou, S. Harenberg, Q. Liu, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

On the data-driven inference of modulatory networks in climate science: an application to West African rainfall

Nonlinear Processes in Geophysics, 22(1), 33–46.

By: D. Gonzalez, M. Angus, I. Tetteh, G. Bello, K. Padmanabhan, S. Pendse, S. Srinivas, J. Yu ...

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

Parallel in situ detection of connected components in adaptive mesh refinement data

In 2015 15th ieee/acm international symposium on cluster, cloud and grid computing (pp. 302–312).

By: X. Zou, K. Wu, D. Boyuka, D. Martin, S. Byna, H. Tang, K. Bansal, T. Ligocki, H. Johansen, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

The The hyperdyadic index and generalized indexing and query with PIQUE

In Proceedings of the 27th International Conference on Scientific and Statistical Database Management.

By: D. Boyuka, H. Tang, K. Bansal, X. Zou, S. Klasky & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance

Cluster Computing-The Journal of Networks Software Tools and Applications, 17(4), 1101–1119.

By: S. Lakshminarasimhan, X. Zou, D. Boyuka, S. Pendse, J. Jenkins, V. Vishwanath, M. Papka, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Different modes of variability over the Tasman Sea: Implications for regional climate

Journal of Climate, 27(22), 8466–8486.

By: S. Liess, A. Kumar, P. Snyder, J. Kawale, K. Steinhaeuser, F. Semazzi, A. Ganguly, N. Samatova, V. Kumar

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks

Concurrency and Computation-Practice & Experience, 26(7), 1453–1473.

By: Q. Liu, J. Logan, Y. Tian, H. Abbasi, N. Podhorszki, J. Choi, S. Klasky, R. Tchoua ...

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Processing MPI derived datatypes on noncontiguous GPU-resident data

IEEE Transactions on Parallel and Distributed Systems, 25(10), 2627–2637.

By: J. Jenkins, J. Dinan, P. Balaji, T. Peterka, N. Samatova & R. Thakur

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Solving the maximum duo-preservation string mapping problem with linear programming

Theoretical Computer Science, 530, 1–11.

By: W. Chen, Z. Chen, N. Samatova, L. Peng, J. Wang & M. Tang

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Theory-guided data science for climate change

Computer, 47(11), 74–78.

By: J. Faghmous, A. Banerjee, S. Shekhar, M. Steinbach, V. Kumar, A. Ganguly, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 conference paper

Transparent in situ data transformations in ADIOS

In 2014 14th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid) (pp. 256–266).

By: D. Boyuka, S. Lakshminarasimhan, X. Zou, Z. Gong, J. Jenkins, E. Schendel, N. Podhorszki, Q. Liu, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 conference paper

A A generic high-performance method for deinterleaving scientific data

In Euro-par 2013 parallel processing (Vol. 8097, pp. 571–582).

By: E. Schendel, S. Harenberg, H. Tang, V. Vishwanath, M. Papka & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 conference paper

Coupled heterogeneous association rule mining (CHARM): Application toward inference of modulatory climate relationships

In 2013 ieee 13th international conference on data mining (icdm) (pp. 1055–1060).

By: D. Gonzalez, S. Pendse, K. Padmanabhan, M. Angus, I. Tetteh, S. Srinivas, A. Villanes, F. Semazzi, V. Kumar, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Discovery of extreme events-related communities in contrasting groups of physical system networks

Data Mining and Knowledge Discovery, 27(2), 225–258.

By: Z. Chen, W. Hendrix, H. Guan, I. Tetteh, A. Choudhary, F. Semazzi, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Global alignment of pairwise protein interaction networks for maximal common conserved patterns

International Journal of Genomics.

By: W. Tian & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

ISABELA for effective in situ compression of scientific data

Concurrency and Computation-Practice & Experience, 25(4), 524–540.

By: S. Lakshminarasimhan, N. Shah, S. Ethier, S. Ku, C. Chang, S. Klasky, R. Latham, R. Ross, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 conference paper

PARLO: Parallel run-time layout optimization for scientific data explorations with heterogeneous access patterns

In Proceedings of the 2013 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID 2013) (pp. 343–351).

By: Z. Gong, D. Boyuka, X. Zou, Q. Liu, N. Podhorszki, S. Klasky, X. Ma, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

Byte-precision level of detail processing for variable precision analytics

In International conference for high performance computing networking.

By: J. Jenkins, E. Schendel, S. Lakshminarasimhan, D. Boyuka, T. Rogers, S. Ethier, R. Ross, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Community-based anomaly detection in evolutionary networks

Journal of Intelligent Information Systems, 39(1), 59–85.

By: Z. Chen, W. Hendrix & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Functional annotation of hierarchical modularity

PLoS One, 7(4).

By: K. Padmanabhan, K. Wang & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Group analysis of the thin film dewetting equation

International Journal of Non-Linear Mechanics, 47(1), 9–13.

By: S. Meleshko, N. Samatova & A. Melechko

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

Hierarchical classifier-regression ensemble for multi-phase non-linear dynamic system response prediction: Application to climate analysis

In 12th IEEE International Conference on Data Mining Workshops (ICDMW 2012) (pp. 781–788).

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

ISOBAR preconditioner for effective and high-throughput lossless data compression

In 2012 ieee 28th international conference on data engineering (icde) (pp. 138–149).

By: E. Schendel, Y. Jin, N. Shah, J. Chen, C. Chang, S. Ku, S. Ethier, S. Klasky ...

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

In-silico identification of phenotype-biased functional modules

Proteome Science, 10.

By: K. Padmanabhan, K. Wilson, A. Rocha, K. Wang, J. Mihelcic & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

Multi-level layout optimization for efficient spatio-temporal queries on ISABELA-compressed data

In 2012 ieee 26th international parallel and distributed processing symposium (ipdps) (pp. 873–884).

By: Z. Gong, S. Lakshminarasimhan, J. Jenkins, H. Kolla, S. Ethier, J. Chen, R. Ross, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

PLoS Computational Biology, 8(5).

By: M. Schmidt, A. Rocha, K. Padmanabhan, Y. Shpanskaya, J. Banfield, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions

In 2012 International Green Computing Conference (IGCC).

By: S. Lakshminarasimhan, P. Kumar, W. Liao, A. Choudhary, V. Kumar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Coordinating computation and I/O in massively parallel sequence search

IEEE Transactions on Parallel and Distributed Systems, 22(4), 529–543.

By: H. Lin, X. Ma, W. Feng & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

BMC Systems Biology, 5.

By: W. Hendrix, A. Rocha, K. Padmanabhan, A. Choudhary, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Efficient alpha, beta-motif finder for identification of phenotype-related functional modules

BMC Bioinformatics, 12.

By: M. Schmidt, A. Rocha, K. Padmanabhan, Z. Chen, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

On the parameterized complexity of the Multi-MCT and Multi-MCST problems

Journal of Combinatorial Optimization, 21(2), 151–158.

By: W. Chen, M. Schmidt & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Transparent runtime parallelization of the R scripting language

Journal of Parallel and Distributed Computing, 71(2), 157–168.

By: J. Li, X. Ma, S. Yoginath, G. Kora & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

BMC Bioinformatics, 11.

By: C. Pan, B. Park, W. McDonald, P. Carey, J. Banfield, N. VerBerkmoes, R. Hettich, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 conference paper

Detecting and Tracking Community Dynamics in Evolutionary Networks

In The 10th IEEE International Conference on Data Mining Workshops (pp. 318–327). Los Alamitos, Calif. : IEEE Computer Society.

By: Z. Chen, K. Wilson, Y. Jin & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Theoretical underpinnings for maximal clique enumeration on perturbed graphs

Theoretical Computer Science, 411(26-28), 2520–2536.

By: W. Hendrix, M. Schmidt, P. Breimyer & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

A A scalable, parallel algorithm for maximal clique enumeration

Journal of Parallel and Distributed Computing, 69(4), 417–428.

By: M. Schmidt, N. Samatova, K. Thomas & B. Park

Source: NC State University Libraries
Added: August 6, 2018

2009 conference paper

BioDEAL: community generation of biological annotations

In BMC Medical Informatics and Decision Making (Vol. 9).

By: P. Breimyer, N. Green, V. Kumar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 conference paper

Compressed ion temperature gradient turbulence in diverted tokamak edge

In Physics of Plasmas (Vol. 16).

By: C. Chang, S. Ku, P. Diamond, Z. Lin, S. Parker, T. Hahm, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 conference paper

Fast matching for all pairs similarity search

In 2009 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol 1 (pp. 295–300).

By: A. Awekar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

On parameterized complexity of the Multi-MCS problem

Theoretical Computer Science, 410(21-23), 2024–2032.

By: W. Chen, M. Schmidt & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

Molecular & Cellular Proteomics, 7(5), 938–948.

By: C. Pan, Y. Oda, P. Lankford, B. Zhang, N. Samatova, D. Pelletier, C. Harwood, R. Hettich

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

From pull-down data to protein interaction networks and complexes with biological relevance

Bioinformatics, 24(7), 979–986.

By: B. Zhang, B. Park, T. Karpinets & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

conference paper

ALACRITY: Analytics-driven lossless data compression for rapid in-situ indexing, storing, and querying

Jenkins, J., Arkatkar, I., Lakshminarasimhan, S., Boyuka, D. A., Schendel, E. R., Shah, N., … Samatova, N. F. In Transactions on large-scale data- and knowledge- centered systems x: special issue on database- and expert-systems applications (Vol. 8220, pp. 95–114).

By: J. Jenkins, I. Arkatkar, S. Lakshminarasimhan, D. Boyuka, E. Schendel, N. Shah, S. Ethier, C. Chang ...

Source: NC State University Libraries
Added: August 6, 2018

report

Anomaly detection in dynamic networks: A survey

Ranshous, S., Shen, S., Koutra, D., Faloutsos, C., & Samatova, N. F. Technical Report- Not held in TRLN member libraries.

By: S. Ranshous, S. Shen, D. Koutra, C. Faloutsos & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

journal article

Characterizing gene and protein crosstalks in subjects at risk of developing Alzheimer's disease: A new computational approach

Padmanabhan, K., Nudelman, K., Harenberg, S., Bello, G., Sohn, D., Shpanskaya, K., … Samatova, N. F. Processes, 5(3).

By: K. Padmanabhan, K. Nudelman, S. Harenberg, G. Bello, D. Sohn, K. Shpanskaya, P. Dikshit, P. Yerramsetty ...

Source: NC State University Libraries
Added: August 6, 2018

report

Community detection in large-scale networks: A Survey and empirical evaluation

Harenberg, S., Bello, G. A., Gjeltema, L., Ranshous, S., Harlalka, J., Seay, R., … Samatova, N. Technical Report- Not held in TRLN member libraries (p. 2014).

By: S. Harenberg, G. Bello, L. Gjeltema, S. Ranshous, J. Harlalka, R. Seay, K. Padmanabhan, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

report

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-Temporal Data

Lakshminarasimhan, S., Shah, N., Ethier, S. J., Klasky, S., Latham, R., Ross, R., & N.F., S. Technical Report- Not held in TRLN member libraries.

By: S. Lakshminarasimhan, N. Shah, S. Ethier, S. Klasky, R. Latham, R. Ross, S. N.F.

Source: NC State University Libraries
Added: August 6, 2018

conference paper

Coupling graph perturbation theory with scalable parallel algorithms for large-scale enumeration of maximal cliques in biological graphs - art. no. 012053

Samatova, N. F., Schmidt, M. C., Hendrix, W., Breimyer, P., Thomas, K., & Park, B. H. In Scidac 2008: Scientific discovery through advanced computing (Vol. 125, pp. 12053–12053).

By: N. Samatova, M. Schmidt, W. Hendrix, P. Breimyer, K. Thomas & B. Park

Source: NC State University Libraries
Added: August 6, 2018

report

Forecaster: Forecast Oriented Feature Elimination-based Classification of Adverse Spatio-Temporal Extremes

Chen, Z., Pansombut, T., Hendrix, W., Gonzalez, D., Semazzi, F., Choudhary, A., … Samatova, N. F.

By: Z. Chen, T. Pansombut, W. Hendrix, D. Gonzalez, F. Semazzi, A. Choudhary, V. Kumar, A. Melechko, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

report

Parallel data layout optimization of scientific data through access-driven replication

Jenkins, J. P., Zou, X., Tang, H., Kimpe, D., Ross, R., & Samatova, N. F. Technical Report- Not held in TRLN member libraries.

By: J. Jenkins, X. Zou, H. Tang, D. Kimpe, R. Ross & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018