Nagiza Samatova

Works (94)

2018 article

An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting

ADVANCES IN DATA MINING: APPLICATIONS AND THEORETICAL ASPECTS (ICDM 2018), pp. 104–118.

By: R. Yang, J. He, M. Xu, H. Ni, P. Jones & N. Samatova

Source: Web Of Science
Added: June 17, 2019

2018 conference paper

Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model

COMPUTATIONAL LINGUISTICS AND INTELLIGENT TEXT PROCESSING, CICLING 2017, PT II, 10762, 195–210.

By: M. Xu, R. Yang, P. Jones & N. Samatova

Source: NC State University Libraries
Added: January 28, 2019

2018 journal article

Sex differences in cognitive decline in subjects with high likelihood of mild cognitive impairment due to Alzheimer's disease

Scientific Reports, 8.

By: D. Sohn, K. Shpanskaya, J. Lucas, J. Petrella, A. Saykin, R. Tanzi, N. Samatova, P. Doraiswamy

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

A lifelong learning topic model structured using latent embeddings

2017 11th ieee international conference on semantic computing (icsc), 260–261.

By: M. Xu, R. Yang, S. Harenberg & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting

ADVANCED DATA MINING AND APPLICATIONS, ADMA 2017, 10604, 595–607.

By: R. Yang, M. Xu, J. He, S. Ranshous & N. Samatova

Source: NC State University Libraries
Added: November 26, 2018

2017 chapter

Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph

In Financial Cryptography and Data Security (pp. 248–263).

By: S. Ranshous, C. Joslyn, S. Kreyling, K. Nowak, N. Samatova, C. West, S. Winters

Source: Crossref
Added: February 24, 2020

2017 conference paper

Leveraging External Knowledge for Phrase-based Topic Modeling

2017 conference on technologies and applications of artificial intelligence (taai), 29–32.

By: M. Xu, R. Yang, S. Ranshous, S. Li & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

Real time utility-based recommendation for revenue optimization via an adaptive online top-K high utility itemsets mining model

2017 13th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD).

By: R. Yang, M. Xu, P. Jones & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Theory-guided data science: A new paradigm for scientific discovery from data

IEEE Transactions on Knowledge and Data Engineering, 29(10), 2318–2331.

By: A. Karpatne, G. Atluri, J. Faghmous, M. Steinbach, A. Banerjee, A. Ganguly, S. Shekhar, N. Samatova, V. Kumar

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

Towards automatic linkage of knowledge worker's claims with associated evidence from screenshots

2017 Third IEEE International Conference on Big Data Computing Service and Applications (IEEE BigDataService 2017), 17–22.

By: P. Jones, D. Medd, S. Ramakrishnan, R. Shah, J. Keyton & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

AMRZone: A runtime AMR data sharing framework for scientific applications

2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid), 116–125.

By: W. Zhang, H. Tang, S. Harenberg, S. Byna, X. Zou, D. Devendran, D. Martin, K. Wu ...

Source: NC State University Libraries
Added: August 6, 2018

2016 chapter

Causality-Guided Feature Selection

In Advanced Data Mining and Applications (pp. 391–405).

By: M. Chaudhary, D. Gonzalez, G. Bello, M. Angus, D. Desai, S. Harenberg, P. Doraiswamy, F. Semazzi, V. Kumar, N. Samatova

Source: Crossref
Added: February 24, 2020

2016 chapter

Community Detection in Dynamic Attributed Graphs

In Advanced Data Mining and Applications (pp. 329–344).

By: G. Bello, S. Harenberg, A. Agrawal & N. Samatova

Source: Crossref
Added: February 24, 2020

2016 conference paper

Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications

2016 IEEE International Conference on Big Data (Big Data), 1359–1366.

By: W. Zhang, H. Tang, S. Ranshous, S. Byna, D. Martin, K. Wu, B. Dong, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

In situ storage layout optimization for AMR spatio-temporal read accesses

Proceedings 45th international conference on parallel processing - icpp 2016, 406–415.

By: H. Tang, S. Byna, S. Harenberg, W. Zhang, X. Zou, D. Martin, B. Dong, D. Devendran ...

Source: NC State University Libraries
Added: August 6, 2018

2016 chapter

Knowledge-Guided Maximal Clique Enumeration

In Advanced Data Mining and Applications (pp. 604–618).

By: S. Harenberg, R. Seay, G. Bello, R. Chirkova, P. Doraiswamy & N. Samatova

Source: Crossref
Added: February 24, 2020

2016 journal article

On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems

Theoretical Computer Science, 609, 434–442.

By: W. Chen, N. Samatova, M. Stallmann, W. Hendrix & W. Ying

Source: NC State University Libraries
Added: August 6, 2018

2016 conference paper

Usage pattern-driven dynamic data layout reorganization

2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid), 356–365.

By: H. Tang, S. Byna, S. Harenberg, X. Zou, W. Zhang, K. Wu, B. Dong, O. Rubel ...

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

An efficient algorithm for pairwise local alignment of protein interaction networks

Journal of Bioinformatics and Computational Biology, 13(2).

By: W. Chen, M. Schmidt, W. Tian, N. Samatova & S. Zhang

Source: NC State University Libraries
Added: August 6, 2018

2015 review

Anomaly detection in dynamic networks: A survey

[Review of ]. Wiley Interdisciplinary Reviews: Computational Statistics, 7(3), 223–247.

By: S. Ranshous, S. Shen, D. Koutra, S. Harenberg, C. Faloutsos & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

Exploring memory hierarchy to improve scientific data read performance

2015 ieee international conference on cluster computing - cluster 2015, 66–69.

By: W. Zhang, H. Tang, X. Zou, S. Harenberg, Q. Liu, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

On the data-driven inference of modulatory networks in climate science: an application to West African rainfall

Nonlinear Processes in Geophysics, 22(1), 33–46.

By: D. Gonzalez, M. Angus, I. Tetteh, G. Bello, K. Padmanabhan, S. Pendse, S. Srinivas, J. Yu ...

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

Parallel in situ detection of connected components in adaptive mesh refinement data

2015 15th ieee/acm international symposium on cluster, cloud and grid computing, 302–312.

By: X. Zou, K. Wu, D. Boyuka, D. Martin, S. Byna, H. Tang, K. Bansal, T. Ligocki, H. Johansen, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2015 chapter

Response-Guided Community Detection: Application to Climate Index Discovery

In Machine Learning and Knowledge Discovery in Databases (pp. 736–751).

By: G. Bello, M. Angus, N. Pedemane, J. Harlalka, F. Semazzi, V. Kumar, N. Samatova

Source: Crossref
Added: February 24, 2020

2015 conference paper

The hyperdyadic index and generalized indexing and query with PIQUE

Proceedings of the 27th International Conference on Scientific and Statistical Database Management.

By: D. Boyuka, H. Tang, K. Bansal, X. Zou, S. Klasky & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Community detection in large-scale networks: a survey and empirical evaluation

Wiley Interdisciplinary Reviews: Computational Statistics, 6(6), 426–439.

By: S. Harenberg, G. Bello, L. Gjeltema, S. Ranshous, J. Harlalka, R. Seay, K. Padmanabhan, N. Samatova

Source: Crossref
Added: August 28, 2020

2014 journal article

DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance

Cluster Computing-The Journal of Networks Software Tools and Applications, 17(4), 1101–1119.

By: S. Lakshminarasimhan, X. Zou, D. Boyuka, S. Pendse, J. Jenkins, V. Vishwanath, M. Papka, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Different modes of variability over the Tasman Sea: Implications for regional climate

Journal of Climate, 27(22), 8466–8486.

By: S. Liess, A. Kumar, P. Snyder, J. Kawale, K. Steinhaeuser, F. Semazzi, A. Ganguly, N. Samatova, V. Kumar

Source: NC State University Libraries
Added: August 6, 2018

2014 chapter

Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes

In Lecture Notes in Computer Science (pp. 668–679).

By: X. Zou, S. Lakshminarasimhan, D. Boyuka, S. Ranshous, H. Tang, S. Klasky, N. Samatova

Source: Crossref
Added: August 28, 2020

2014 journal article

Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks

Concurrency and Computation-Practice & Experience, 26(7), 1453–1473.

By: Q. Liu, J. Logan, Y. Tian, H. Abbasi, N. Podhorszki, J. Choi, S. Klasky, R. Tchoua ...

Source: NC State University Libraries
Added: August 6, 2018

2014 chapter

Improving Read Performance with Online Access Pattern Analysis and Prefetching

In Lecture Notes in Computer Science (pp. 246–257).

By: H. Tang, X. Zou, J. Jenkins, D. Boyuka, S. Ranshous, D. Kimpe, S. Klasky, N. Samatova

Source: Crossref
Added: August 28, 2020

2014 journal article

Processing MPI derived datatypes on noncontiguous GPU-resident data

IEEE Transactions on Parallel and Distributed Systems, 25(10), 2627–2637.

By: J. Jenkins, J. Dinan, P. Balaji, T. Peterka, N. Samatova & R. Thakur

Source: NC State University Libraries
Added: August 6, 2018

2014 chapter

RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication

In Lecture Notes in Computer Science (pp. 296–313).

By: J. Jenkins, X. Zou, H. Tang, D. Kimpe, R. Ross & N. Samatova

Source: Crossref
Added: August 28, 2020

2014 journal article

Solving the maximum duo-preservation string mapping problem with linear programming

Theoretical Computer Science, 530, 1–11.

By: W. Chen, Z. Chen, N. Samatova, L. Peng, J. Wang & M. Tang

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Theory-guided data science for climate change

Computer, 47(11), 74–78.

By: J. Faghmous, A. Banerjee, S. Shekhar, M. Steinbach, V. Kumar, A. Ganguly, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2014 conference paper

Transparent in situ data transformations in ADIOS

2014 14th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid), 256–266.

By: D. Boyuka, S. Lakshminarasimhan, X. Zou, Z. Gong, J. Jenkins, E. Schendel, N. Podhorszki, Q. Liu, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 conference paper

A generic high-performance method for deinterleaving scientific data

Euro-par 2013 parallel processing, 8097, 571–582.

By: E. Schendel, S. Harenberg, H. Tang, V. Vishwanath, M. Papka & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

A graph-based approach to find teleconnections in climate data

Statistical Analysis and Data Mining, 6(3), 158–179.

By: J. Kawale, S. Liess, A. Kumar, M. Steinbach, P. Snyder, V. Kumar, A. Ganguly, N. Samatova, F. Semazzi

Source: Crossref
Added: August 28, 2020

2013 chapter

ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying

In Transactions on Large-Scale Data- and Knowledge-Centered Systems X (pp. 95–114).

By: J. Jenkins, I. Arkatkar, S. Lakshminarasimhan, D. Boyuka, E. Schendel, N. Shah, S. Ethier, C. Chang ...

Source: Crossref
Added: August 28, 2020

2013 journal article

Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack

NeuroImage: Clinical, 3, 123–131.

By: G. Atluri, K. Padmanabhan, G. Fang, M. Steinbach, J. Petrella, K. Lim, A. MacDonald, N. Samatova, P. Doraiswamy, V. Kumar

Source: Crossref
Added: August 28, 2020

2013 conference paper

Coupled heterogeneous association rule mining (CHARM): Application toward inference of modulatory climate relationships

2013 ieee 13th international conference on data mining (icdm), 1055–1060.

By: D. Gonzalez, S. Pendse, K. Padmanabhan, M. Angus, I. Tetteh, S. Srinivas, A. Villanes, F. Semazzi, V. Kumar, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Discovery of extreme events-related communities in contrasting groups of physical system networks

Data Mining and Knowledge Discovery, 27(2), 225–258.

By: Z. Chen, W. Hendrix, H. Guan, I. Tetteh, A. Choudhary, F. Semazzi, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Global alignment of pairwise protein interaction networks for maximal common conserved patterns

International Journal of Genomics.

By: W. Tian & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

ISABELA for effective in situ compression of scientific data

Concurrency and Computation-Practice & Experience, 25(4), 524–540.

By: S. Lakshminarasimhan, N. Shah, S. Ethier, S. Ku, C. Chang, S. Klasky, R. Latham, R. Ross, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2013 conference paper

PARLO: Parallel run-time layout optimization for scientific data explorations with heterogeneous access patterns

Proceedings of the 2013 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID 2013), 343–351.

By: Z. Gong, D. Boyuka, X. Zou, Q. Liu, N. Podhorszki, S. Klasky, X. Ma, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 chapter

Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying

In Lecture Notes in Computer Science (pp. 16–30).

By: J. Jenkins, I. Arkatkar, S. Lakshminarasimhan, N. Shah, E. Schendel, S. Ethier, C. Chang, J. Chen ...

Source: Crossref
Added: August 28, 2020

2012 conference paper

Byte-precision level of detail processing for variable precision analytics

International conference for high performance computing networking.

By: J. Jenkins, E. Schendel, S. Lakshminarasimhan, D. Boyuka, T. Rogers, S. Ethier, R. Ross, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Community-based anomaly detection in evolutionary networks

Journal of Intelligent Information Systems, 39(1), 59–85.

By: Z. Chen, W. Hendrix & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Functional annotation of hierarchical modularity

PLoS One, 7(4).

By: K. Padmanabhan, K. Wang & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

Group analysis of the thin film dewetting equation

International Journal of Non-Linear Mechanics, 47(1), 9–13.

By: S. Meleshko, N. Samatova & A. Melechko

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

Hierarchical classifier-regression ensemble for multi-phase non-linear dynamic system response prediction: Application to climate analysis

12th IEEE International Conference on Data Mining Workshops (ICDMW 2012), 781–788.

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

ISOBAR preconditioner for effective and high-throughput lossless data compression

2012 ieee 28th international conference on data engineering (icde), 138–149.

By: E. Schendel, Y. Jin, N. Shah, J. Chen, C. Chang, S. Ku, S. Ethier, S. Klasky ...

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

In-silico identification of phenotype-biased functional modules

Proteome Science, 10.

By: K. Padmanabhan, K. Wilson, A. Rocha, K. Wang, J. Mihelcic & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

Multi-level layout optimization for efficient spatio-temporal queries on ISABELA-compressed data

2012 ieee 26th international parallel and distributed processing symposium (ipdps), 873–884.

By: Z. Gong, S. Lakshminarasimhan, J. Jenkins, H. Kolla, S. Ethier, J. Chen, R. Ross, S. Klasky, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

PLoS Computational Biology, 8(5).

By: M. Schmidt, A. Rocha, K. Padmanabhan, Y. Shpanskaya, J. Banfield, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2012 conference paper

On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions

2012 International Green Computing Conference (IGCC).

By: S. Lakshminarasimhan, P. Kumar, W. Liao, A. Choudhary, V. Kumar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 chapter

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data

In Euro-Par 2011 Parallel Processing (pp. 366–379).

By: S. Lakshminarasimhan, N. Shah, S. Ethier, S. Klasky, R. Latham, R. Ross, N. Samatova

Source: Crossref
Added: August 28, 2020

2011 journal article

Coordinating computation and I/O in massively parallel sequence search

IEEE Transactions on Parallel and Distributed Systems, 22(4), 529–543.

By: H. Lin, X. Ma, W. Feng & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

BMC Systems Biology, 5.

By: W. Hendrix, A. Rocha, K. Padmanabhan, A. Choudhary, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Efficient alpha, beta-motif finder for identification of phenotype-related functional modules

BMC Bioinformatics, 12.

By: M. Schmidt, A. Rocha, K. Padmanabhan, Z. Chen, K. Scott, J. Mihelcic, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 chapter

Lessons Learned from Exploring the Backtracking Paradigm on the GPU

In Euro-Par 2011 Parallel Processing (pp. 425–437).

By: J. Jenkins, I. Arkatkar, J. Owens, A. Choudhary & N. Samatova

Source: Crossref
Added: August 28, 2020

2011 journal article

On the parameterized complexity of the Multi-MCT and Multi-MCST problems

Journal of Combinatorial Optimization, 21(2), 151–158.

By: W. Chen, M. Schmidt & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

The ISME Journal, 5(7), 1152–1161.

By: C. Belnap, C. Pan, V. Denef, N. Samatova, R. Hettich & J. Banfield

Source: Crossref
Added: August 28, 2020

2011 journal article

Transparent runtime parallelization of the R scripting language

Journal of Parallel and Distributed Computing, 71(2), 157–168.

By: J. Li, X. Ma, S. Yoginath, G. Kora & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

BMC Bioinformatics, 11.

By: C. Pan, B. Park, W. McDonald, P. Carey, J. Banfield, N. VerBerkmoes, R. Hettich, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 conference paper

Detecting and Tracking Community Dynamics in Evolutionary Networks

The 10th IEEE International Conference on Data Mining Workshops, 318–327.

By: Z. Chen, K. Wilson, Y. Jin & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Theoretical underpinnings for maximal clique enumeration on perturbed graphs

Theoretical Computer Science, 411(26-28), 2520–2536.

By: W. Hendrix, M. Schmidt, P. Breimyer & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

A scalable, parallel algorithm for maximal clique enumeration

Journal of Parallel and Distributed Computing, 69(4), 417–428.

By: M. Schmidt, N. Samatova, K. Thomas & B. Park

Source: NC State University Libraries
Added: August 6, 2018

2009 conference paper

BioDEAL: community generation of biological annotations

BMC Medical Informatics and Decision Making, 9.

By: P. Breimyer, N. Green, V. Kumar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 conference paper

Compressed ion temperature gradient turbulence in diverted tokamak edge

Physics of Plasmas, 16(5).

By: C. Chang, S. Ku, P. Diamond, Z. Lin, S. Parker, T. Hahm, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

The ISME Journal, 4(4), 520–530.

By: C. Belnap, C. Pan, N. VerBerkmoes, M. Power, N. Samatova, R. Carver, R. Hettich, J. Banfield

Source: Crossref
Added: August 28, 2020

2009 conference paper

Fast matching for all pairs similarity search

2009 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol 1, 295–300.

By: A. Awekar & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Improved genome annotation for Zymomonas mobilis

Nature Biotechnology, 27(10), 893–894.

By: S. Yang, K. Pappas, L. Hauser, M. Land, G. Chen, G. Hurst, C. Pan, V. Kouvelis ...

Source: Crossref
Added: August 28, 2020

2009 journal article

On parameterized complexity of the Multi-MCS problem

Theoretical Computer Science, 410(21-23), 2024–2032.

By: W. Chen, M. Schmidt & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2008 chapter

Adaptive Request Scheduling for Parallel Scientific Web Services

In Lecture Notes in Computer Science (pp. 276–294).

By: H. Lin, X. Ma, J. Li, T. Yu & N. Samatova

Source: Crossref
Added: August 28, 2020

2008 journal article

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

Molecular & Cellular Proteomics, 7(5), 938–948.

By: C. Pan, Y. Oda, P. Lankford, B. Zhang, N. Samatova, D. Pelletier, C. Harwood, R. Hettich

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

From pull-down data to protein interaction networks and complexes with biological relevance

Bioinformatics, 24(7), 979–986.

By: B. Zhang, B. Park, T. Karpinets & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

2008 chapter

The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms

In Parallel Processing and Applied Mathematics (pp. 170–179).

By: F. Abu-Khzam, M. Rizk, D. Abdallah & N. Samatova

Source: Crossref
Added: August 28, 2020

2007 journal article

Sampling streaming data with replacement

Computational Statistics & Data Analysis, 52(2), 750–762.

By: B. Park, G. Ostrouchov & N. Samatova

Source: Crossref
Added: August 28, 2020

2006 journal article

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Journal of Proteome Research, 5(11), 2909–2918.

By: B. Zhang, N. VerBerkmoes, M. Langston, E. Uberbacher, R. Hettich & N. Samatova

Source: Crossref
Added: August 28, 2020

2006 journal article

Gene network shaping of inherent noise spectra

Nature, 439(7076), 608–611.

By: D. Austin, M. Allen, J. McCollum, R. Dar, J. Wilgus, G. Sayler, N. Samatova, C. Cox, M. Simpson

Source: Crossref
Added: August 28, 2020

2006 journal article

ProRata:  A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation

Analytical Chemistry, 78(20), 7121–7131.

By: C. Pan, G. Kora, W. McDonald, D. Tabb, N. VerBerkmoes, G. Hurst, D. Pelletier, N. Samatova, R. Hettich

Source: Crossref
Added: August 28, 2020

2006 journal article

Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics

Analytical Chemistry, 78(20), 7110–7120.

By: C. Pan, G. Kora, D. Tabb, D. Pelletier, W. McDonald, G. Hurst, R. Hettich, N. Samatova

Source: Crossref
Added: August 28, 2020

2006 journal article

The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

Computational Biology and Chemistry, 30(1), 39–49.

By: J. McCollum, G. Peterson, C. Cox, M. Simpson & N. Samatova

Source: Crossref
Added: August 28, 2020

2005 chapter

A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem

In Lecture Notes in Computer Science (pp. 717–727).

By: W. Suters, F. Abu-Khzam, Y. Zhang, C. Symons, N. Samatova & M. Langston

Source: Crossref
Added: August 28, 2020

2005 journal article

In silico Discovery of Enzyme–Substrate Specificity-determining Residue Clusters

Journal of Molecular Biology, 352(5), 1105–1117.

By: G. Yu, B. Park, P. Chandramohan, R. Munavalli, A. Geist & N. Samatova

Source: Crossref
Added: August 28, 2020

conference paper

ALACRITY: Analytics-driven lossless data compression for rapid in-situ indexing, storing, and querying

Jenkins, J., Arkatkar, I., Lakshminarasimhan, S., Boyuka, D. A., Schendel, E. R., Shah, N., … Samatova, N. F. Transactions on large-scale data- and knowledge- centered systems x: special issue on database- and expert-systems applications, 8220, 95–114.

By: J. Jenkins, I. Arkatkar, S. Lakshminarasimhan, D. Boyuka, E. Schendel, N. Shah, S. Ethier, C. Chang ...

Source: NC State University Libraries
Added: August 6, 2018

report

Anomaly detection in dynamic networks: A survey

Ranshous, S., Shen, S., Koutra, D., Faloutsos, C., & Samatova, N. F. In Technical Report- Not held in TRLN member libraries.

By: S. Ranshous, S. Shen, D. Koutra, C. Faloutsos & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

journal article

Characterizing gene and protein crosstalks in subjects at risk of developing Alzheimer's disease: A new computational approach

Padmanabhan, K., Nudelman, K., Harenberg, S., Bello, G., Sohn, D., Shpanskaya, K., … Samatova, N. F. Processes, 5(3).

By: K. Padmanabhan, K. Nudelman, S. Harenberg, G. Bello, D. Sohn, K. Shpanskaya, P. Dikshit, P. Yerramsetty ...

Source: NC State University Libraries
Added: August 6, 2018

report

Community detection in large-scale networks: A Survey and empirical evaluation

Harenberg, S., Bello, G. A., Gjeltema, L., Ranshous, S., Harlalka, J., Seay, R., … Samatova, N. In Technical Report- Not held in TRLN member libraries (p. 2014).

By: S. Harenberg, G. Bello, L. Gjeltema, S. Ranshous, J. Harlalka, R. Seay, K. Padmanabhan, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

report

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-Temporal Data

Lakshminarasimhan, S., Shah, N., Ethier, S. J., Klasky, S., Latham, R., Ross, R., & N.F., S. In Technical Report- Not held in TRLN member libraries.

By: S. Lakshminarasimhan, N. Shah, S. Ethier, S. Klasky, R. Latham, R. Ross, S. N.F.

Source: NC State University Libraries
Added: August 6, 2018

conference paper

Coupling graph perturbation theory with scalable parallel algorithms for large-scale enumeration of maximal cliques in biological graphs - art. no. 012053

Samatova, N. F., Schmidt, M. C., Hendrix, W., Breimyer, P., Thomas, K., & Park, B. H. Scidac 2008: Scientific discovery through advanced computing, 125, 12053–12053.

By: N. Samatova, M. Schmidt, W. Hendrix, P. Breimyer, K. Thomas & B. Park

Source: NC State University Libraries
Added: August 6, 2018

report

Forecaster: Forecast Oriented Feature Elimination-based Classification of Adverse Spatio-Temporal Extremes

Chen, Z., Pansombut, T., Hendrix, W., Gonzalez, D., Semazzi, F., Choudhary, A., … Samatova, N. F.

By: Z. Chen, T. Pansombut, W. Hendrix, D. Gonzalez, F. Semazzi, A. Choudhary, V. Kumar, A. Melechko, N. Samatova

Source: NC State University Libraries
Added: August 6, 2018

report

Parallel data layout optimization of scientific data through access-driven replication

Jenkins, J. P., Zou, X., Tang, H., Kimpe, D., Ross, R., & Samatova, N. F. In Technical Report- Not held in TRLN member libraries.

By: J. Jenkins, X. Zou, H. Tang, D. Kimpe, R. Ross & N. Samatova

Source: NC State University Libraries
Added: August 6, 2018