Nagiza Faridovna Samatova

Predictive models with end user preference

Zhao, Y., Yang, X., Bolnykh, C., Harenberg, S., Korchiev, N., Yerramsetty, S. R., … Samatova, N. F. (2021, August 26). STATISTICAL ANALYSIS AND DATA MINING, Vol. 8.

Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates

COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION, 90.

The one-dimensional Green-Naghdi equations with a time dependent bottom topography and their conservation laws

PHYSICS OF FLUIDS, 32(12).

An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting

ADVANCES IN DATA MINING: APPLICATIONS AND THEORETICAL ASPECTS (ICDM 2018), Vol. 10933, pp. 104–118.

Leveraging External Knowledge for Phrase-Based Topic Modeling

Proceedings - 2017 Conference on Technologies and Applications of Artificial Intelligence, TAAI 2017, 29–32.

Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model

COMPUTATIONAL LINGUISTICS AND INTELLIGENT TEXT PROCESSING, CICLING 2017, PT II, Vol. 10762, pp. 195–210.

Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model

ICNC-FSKD 2017 - 13th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery, 1859–1866.

Sex Differences in Cognitive Decline in Subjects with High Likelihood of Mild Cognitive Impairment due to Alzheimer's disease

SCIENTIFIC REPORTS, 8.

A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery

In C. Cherifi, H. Cherifi, M. Karsai, & M. Musolesi (Eds.), Complex Networks & Their Applications VI. COMPLEX NETWORKS 2017 (pp. 253–264).

A Lifelong Learning Topic Model Structured Using Latent Embeddings

2017 11TH IEEE INTERNATIONAL CONFERENCE ON SEMANTIC COMPUTING (ICSC), pp. 260–261.

An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting

ADVANCED DATA MINING AND APPLICATIONS, ADMA 2017, Vol. 10604, pp. 595–607.

Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing

In C. Cherifi, H. Cherifi, M. Karsai, & M. Musolesi (Eds.), Complex Networks & Their Applications VI. COMPLEX NETWORKS 2017 (pp. 105–116).

Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph

In Financial Cryptography and Data Security (pp. 248–263).

Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data

IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 29(10), 2318–2331.

Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots

2017 THIRD IEEE INTERNATIONAL CONFERENCE ON BIG DATA COMPUTING SERVICE AND APPLICATIONS (IEEE BIGDATASERVICE 2017), pp. 17–22.

AMRZone: A Runtime AMR Data Sharing Framework For Scientific Applications

2016 16TH IEEE/ACM INTERNATIONAL SYMPOSIUM ON CLUSTER, CLOUD AND GRID COMPUTING (CCGRID), pp. 116–125.

Causality-Guided Feature Selection

In Advanced Data Mining and Applications (pp. 391–405).

Community Detection in Dynamic Attributed Graphs

In Advanced Data Mining and Applications (pp. 329–344).

Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications

2016 IEEE International Conference on Big Data (Big Data), 1359–1366.

In situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses

PROCEEDINGS 45TH INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING - ICPP 2016, pp. 406–415.

Knowledge-Guided Maximal Clique Enumeration

In Advanced Data Mining and Applications (pp. 604–618).

On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems

THEORETICAL COMPUTER SCIENCE, 609, 434–442.

Usage Pattern-Driven Dynamic Data Layout Reorganization

2016 16TH IEEE/ACM INTERNATIONAL SYMPOSIUM ON CLUSTER, CLOUD AND GRID COMPUTING (CCGRID), pp. 356–365.

An efficient algorithm for pairwise local alignment of protein interaction networks

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 13(2).

Anomaly detection in dynamic networks: a survey

[Review of ]. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS, 7(3), 223–247.

Exploring Memory Hierarchy to Improve Scientific Data Read Performance

2015 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING - CLUSTER 2015, pp. 66–69.

On the data-driven inference of modulatory networks in climate science: an application to West African rainfall

NONLINEAR PROCESSES IN GEOPHYSICS, 22(1), 33–46.

Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data

2015 15TH IEEE/ACM INTERNATIONAL SYMPOSIUM ON CLUSTER, CLOUD AND GRID COMPUTING, pp. 302–312.

Response-Guided Community Detection: Application to Climate Index Discovery

In Machine Learning and Knowledge Discovery in Databases (pp. 736–751).

The Hyperdyadic Index and Generalized Indexing and Query with PIQUE

PROCEEDINGS OF THE 27TH INTERNATIONAL CONFERENCE ON SCIENTIFIC AND STATISTICAL DATABASE MANAGEMENT.

Community detection in large-scale networks: a survey and empirical evaluation

Wiley Interdisciplinary Reviews: Computational Statistics, 6(6), 426–439.

DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance

CLUSTER COMPUTING-THE JOURNAL OF NETWORKS SOFTWARE TOOLS AND APPLICATIONS, 17(4), 1101–1119.

Different Modes of Variability over the Tasman Sea: Implications for Regional Climate

JOURNAL OF CLIMATE, 27(22), 8466–8486.

Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes

In Lecture Notes in Computer Science (pp. 668–679).

Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks

CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 26(7), 1453–1473.

Improving Read Performance with Online Access Pattern Analysis and Prefetching

In Lecture Notes in Computer Science (pp. 246–257).

Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 25(10), 2627–2637.

RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication

In Lecture Notes in Computer Science (pp. 296–313).

Solving the maximum duo-preservation string mapping problem with linear programming

THEORETICAL COMPUTER SCIENCE, 530, 1–11.

Theory-Guided Data Science for Climate Change

COMPUTER, 47(11), 74–78.

Transparent In Situ Data Transformations in ADIOS

2014 14TH IEEE/ACM INTERNATIONAL SYMPOSIUM ON CLUSTER, CLOUD AND GRID COMPUTING (CCGRID), pp. 256–266.

A generic high-performance method for deinterleaving scientific data

Euro-par 2013 parallel processing, 8097, 571–582.

A graph-based approach to find teleconnections in climate data

Statistical Analysis and Data Mining, 6(3), 158–179.

ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying

In Transactions on Large-Scale Data- and Knowledge-Centered Systems X (pp. 95–114).

Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack

NeuroImage: Clinical, 3, 123–131.

Coupled Heterogeneous Association Rule Mining (CHARM): Application toward Inference of Modulatory Climate Relationships

2013 IEEE 13TH INTERNATIONAL CONFERENCE ON DATA MINING (ICDM), pp. 1055–1060.

Discovery of extreme events-related communities in contrasting groups of physical system networks

DATA MINING AND KNOWLEDGE DISCOVERY, 27(2), 225–258.

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns

INTERNATIONAL JOURNAL OF GENOMICS, 2013.

ISABELA for effective in situ compression of scientific data

CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 25(4), 524–540.

PARLO: PArallel Run-time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns

PROCEEDINGS OF THE 2013 13TH IEEE/ACM INTERNATIONAL SYMPOSIUM ON CLUSTER, CLOUD AND GRID COMPUTING (CCGRID 2013), pp. 343–351.

Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying

In Lecture Notes in Computer Science (pp. 16–30).

Byte-precision level of detail processing for variable precision analytics

International conference for high performance computing networking.

Community-based anomaly detection in evolutionary networks

Journal of Intelligent Information Systems, 39(1), 59–85.

Functional Annotation of Hierarchical Modularity

PLOS ONE, 7(4).

Group analysis of the thin film dewetting equation

INTERNATIONAL JOURNAL OF NON-LINEAR MECHANICS, 47(1), 9–13.

Hierarchical Classifier-Regression Ensemble for Multi-Phase Non-Linear Dynamic System Response Prediction: Application to Climate Analysis

12TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING WORKSHOPS (ICDMW 2012), pp. 781–788.

ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression

2012 IEEE 28TH INTERNATIONAL CONFERENCE ON DATA ENGINEERING (ICDE), pp. 138–149.

In-silico identification of phenotype-biased functional modules

PROTEOME SCIENCE, 10.

Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data

2012 IEEE 26TH INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING SYMPOSIUM (IPDPS), pp. 873–884.

NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems

PLOS COMPUTATIONAL BIOLOGY, 8(5).

On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions

2012 International Green Computing Conference (IGCC).

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data

In Euro-Par 2011 Parallel Processing (pp. 366–379).

Coordinating Computation and I/O in Massively Parallel Sequence Search

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 22(4), 529–543.

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

BMC SYSTEMS BIOLOGY, 5.

Efficient alpha, beta-motif finder for identification of phenotype-related functional modules

BMC BIOINFORMATICS, 12.

Lessons Learned from Exploring the Backtracking Paradigm on the GPU

In Euro-Par 2011 Parallel Processing (pp. 425–437).

On the parameterized complexity of the Multi-MCT and Multi-MCST problems

JOURNAL OF COMBINATORIAL OPTIMIZATION, 21(2), 151–158.

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

The ISME Journal, 5(7), 1152–1161.

Transparent runtime parallelization of the R scripting language

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, 71(2), 157–168.

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

BMC Bioinformatics, 11.

Detecting and Tracking Community Dynamics in Evolutionary Networks

The 10th IEEE International Conference on Data Mining Workshops, 318–327.

Theoretical underpinnings for maximal clique enumeration on perturbed graphs

THEORETICAL COMPUTER SCIENCE, 411(26-28), 2520–2536.

A scalable, parallel algorithm for maximal clique enumeration

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, 69(4), 417–428.

BioDEAL: community generation of biological annotations

BMC Medical Informatics and Decision Making, 9.

Compressed ion temperature gradient turbulence in diverted tokamak edge

Chang, C. S., Ku, S., Diamond, P. H., Lin, Z., Parker, S., Hahm, T. S., & Samatova, N. (2009, May). PHYSICS OF PLASMAS, Vol. 16.

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

The ISME Journal, 4(4), 520–530.

Fast matching for all pairs similarity search

2009 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol 1, 295–300.

Improved genome annotation for Zymomonas mobilis

Nature Biotechnology, 27(10), 893–894.

On parameterized complexity of the Multi-MCS problem

THEORETICAL COMPUTER SCIENCE, 410(21-23), 2024–2032.

Adaptive Request Scheduling for Parallel Scientific Web Services

In Lecture Notes in Computer Science (pp. 276–294).

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

MOLECULAR & CELLULAR PROTEOMICS, 7(5), 938–948.

From pull-down data to protein interaction networks and complexes with biological relevance

BIOINFORMATICS, 24(7), 979–986.

The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms

In Parallel Processing and Applied Mathematics (pp. 170–179).

Sampling streaming data with replacement

Computational Statistics & Data Analysis, 52(2), 750–762.

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Journal of Proteome Research, 5(11), 2909–2918.

Gene network shaping of inherent noise spectra

Nature, 439(7076), 608–611.

ProRata:  A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation

Analytical Chemistry, 78(20), 7121–7131.

Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics

Analytical Chemistry, 78(20), 7110–7120.

The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

Computational Biology and Chemistry, 30(1), 39–49.

A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem

In Lecture Notes in Computer Science (pp. 717–727).

In silico Discovery of Enzyme–Substrate Specificity-determining Residue Clusters

Journal of Molecular Biology, 352(5), 1105–1117.

ALACRITY: Analytics-driven lossless data compression for rapid in-situ indexing, storing, and querying

Jenkins, J., Arkatkar, I., Lakshminarasimhan, S., Boyuka, D. A., Schendel, E. R., Shah, N., … Samatova, N. F. Transactions on large-scale data- and knowledge- centered systems x: special issue on database- and expert-systems applications, 8220, 95–114.

Anomaly detection in dynamic networks: A survey

Ranshous, S., Shen, S., Koutra, D., Faloutsos, C., & Samatova, N. F. In Technical Report- Not held in TRLN member libraries.

Characterizing gene and protein crosstalks in subjects at risk of developing Alzheimer's disease: A new computational approach

Padmanabhan, K., Nudelman, K., Harenberg, S., Bello, G., Sohn, D., Shpanskaya, K., … Samatova, N. F. Processes, 5(3).

Community detection in large-scale networks: A Survey and empirical evaluation

Harenberg, S., Bello, G. A., Gjeltema, L., Ranshous, S., Harlalka, J., Seay, R., … Samatova, N. In Technical Report- Not held in TRLN member libraries (p. 2014).

Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-Temporal Data

Lakshminarasimhan, S., Shah, N., Ethier, S. J., Klasky, S., Latham, R., Ross, R., & N.F., S. In Technical Report- Not held in TRLN member libraries.

Coupling graph perturbation theory with scalable parallel algorithms for large-scale enumeration of maximal cliques in biological graphs - art. no. 012053

Samatova, N. F., Schmidt, M. C., Hendrix, W., Breimyer, P., Thomas, K., & Park, B. H. Scidac 2008: Scientific discovery through advanced computing, 125, 12053–12053.

Forecaster: Forecast Oriented Feature Elimination-based Classification of Adverse Spatio-Temporal Extremes

Chen, Z., Pansombut, T., Hendrix, W., Gonzalez, D., Semazzi, F., Choudhary, A., … Samatova, N. F.

Parallel data layout optimization of scientific data through access-driven replication

Jenkins, J. P., Zou, X., Tang, H., Kimpe, D., Ross, R., & Samatova, N. F. In Technical Report- Not held in TRLN member libraries.