@article{zhao_yang_bolnykh_harenberg_korchiev_yerramsetty_vellanki_kodumagulla_samatova_2021, title={Predictive models with end user preference}, DOI={10.1002/sam.11545}, journal={STATISTICAL ANALYSIS AND DATA MINING}, author={Zhao, Yifan and Yang, Xian and Bolnykh, Carolina and Harenberg, Steve and Korchiev, Nodirbek and Yerramsetty, Saavan Raj and Vellanki, Bhanu Prasad and Kodumagulla, Ramakanth and Samatova, Nagiza F.}, year={2021}, month={Aug} }
 @article{meleshko_samatova_2020, title={Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates}, volume={90}, ISBN={1878-7274}, DOI={10.1016/j.cnsns.2020.105337}, journal={COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION}, author={Meleshko, S. and Samatova, N. F.}, year={2020}, month={Nov} }
 @article{kaptsov_meleshko_samatova_2020, title={The one-dimensional Green-Naghdi equations with a time dependent bottom topography and their conservation laws}, volume={32}, ISBN={1089-7666}, DOI={10.1063/5.0031238}, number={12}, journal={PHYSICS OF FLUIDS}, author={Kaptsov, E. and Meleshko, S. and Samatova, N. F.}, year={2020} }
 @article{yang_he_xu_ni_jones_samatova_2018, series={Lecture Notes in Artificial Intelligence}, title={An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting}, volume={10933}, ISBN={1611-3349}, DOI={10.1007/978-3-319-95786-9_8}, journal={ADVANCES IN DATA MINING: APPLICATIONS AND THEORETICAL ASPECTS (ICDM 2018)}, author={Yang, Ruixin and He, Junyi and Xu, Mingyang and Ni, Haoqi and Jones, Paul and Samatova, Nagiza}, year={2018}, pages={104–118}, collection={Lecture Notes in Artificial Intelligence} }
 @inproceedings{xu_yang_jones_samatova_2018, title={Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model}, volume={10762}, ISBN={0}, DOI={10.1007/978-3-319-77116-8_15}, booktitle={COMPUTATIONAL LINGUISTICS AND INTELLIGENT TEXT PROCESSING, CICLING 2017, PT II}, author={Xu, Mingyang and Yang, Ruixin and Jones, Paul and Samatova, Nagiza F.}, year={2018}, pages={195–210} }
 @article{sohn_shpanskaya_lucas_petrella_saykin_tanzi_samatova_doraiswamy_2018, title={Sex differences in cognitive decline in subjects with high likelihood of mild cognitive impairment due to Alzheimer's disease}, volume={8}, DOI={10.1038/s41598-018-25377-w}, journal={Scientific Reports}, author={Sohn, D. and Shpanskaya, K. and Lucas, J. E. and Petrella, J. R. and Saykin, A. J. and Tanzi, R. E. and Samatova, N. F. and Doraiswamy, P. M.}, year={2018} }
 @inbook{chaudhary_ranshous_samatova_2017, place={Cham, Switzerland}, series={Studies in Computational Intelligence}, title={A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery}, ISBN={9783319721491 9783319721507}, ISSN={1860-949X 1860-9503}, url={http://dx.doi.org/10.1007/978-3-319-72150-7_21}, DOI={10.1007/978-3-319-72150-7_21}, booktitle={Complex Networks & Their Applications VI. COMPLEX NETWORKS 2017}, publisher={Springer International Publishing}, author={Chaudhary, Mandar S. and Ranshous, Stephen and Samatova, Nagiza F.}, editor={Cherifi, C. and Cherifi, H. and Karsai, M. and Musolesi, M.Editors}, year={2017}, month={Nov}, pages={253–264}, collection={Studies in Computational Intelligence} }
 @inproceedings{xu_yang_harenberg_samatova_2017, title={A lifelong learning topic model structured using latent embeddings}, DOI={10.1109/icsc.2017.15}, booktitle={2017 11th ieee international conference on semantic computing (icsc)}, author={Xu, M. Y. and Yang, R. X. and Harenberg, S. and Samatova, N. F.}, year={2017}, pages={260–261} }
 @inproceedings{yang_xu_he_ranshous_samatova_2017, title={An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting}, volume={10604}, ISBN={0}, DOI={10.1007/978-3-319-69179-4_42}, booktitle={ADVANCED DATA MINING AND APPLICATIONS, ADMA 2017}, author={Yang, Ruixin and Xu, Mingyang and He, Junyi and Ranshous, Stephen and Samatova, Nagiza F.}, year={2017}, pages={595–607} }
 @inbook{ranshous_chaudhary_samatova_2017, place={Cham, Switzerland}, series={Studies in Computational Intelligence}, title={Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing}, ISBN={9783319721491 9783319721507}, ISSN={1860-949X 1860-9503}, url={http://dx.doi.org/10.1007/978-3-319-72150-7_9}, DOI={10.1007/978-3-319-72150-7_9}, booktitle={Complex Networks & Their Applications VI. COMPLEX NETWORKS 2017}, publisher={Springer International Publishing}, author={Ranshous, Stephen and Chaudhary, Mandar and Samatova, Nagiza F.}, editor={Cherifi, C. and Cherifi, H. and Karsai, M. and Musolesi, M.Editors}, year={2017}, month={Nov}, pages={105–116}, collection={Studies in Computational Intelligence} }
 @inbook{ranshous_joslyn_kreyling_nowak_samatova_west_winters_2017, title={Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph}, ISBN={9783319702773 9783319702780}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-70278-0_16}, DOI={10.1007/978-3-319-70278-0_16}, booktitle={Financial Cryptography and Data Security}, publisher={Springer International Publishing}, author={Ranshous, Stephen and Joslyn, Cliff A. and Kreyling, Sean and Nowak, Kathleen and Samatova, Nagiza F. and West, Curtis L. and Winters, Samuel}, year={2017}, pages={248–263} }
 @inproceedings{xu_yang_ranshous_li_samatova_2017, title={Leveraging External Knowledge for Phrase-based Topic Modeling}, DOI={10.1109/taai.2017.25}, booktitle={2017 conference on technologies and applications of artificial intelligence (taai)}, author={Xu, M. Y. and Yang, R. X. and Ranshous, S. and Li, S. J. and Samatova, N. F.}, year={2017}, pages={29–32} }
 @inproceedings{yang_xu_jones_samatova_2017, title={Real time utility-based recommendation for revenue optimization via an adaptive online top-K high utility itemsets mining model}, DOI={10.1109/fskd.2017.8393050}, booktitle={2017 13th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD)}, author={Yang, R. X. and Xu, M. Y. and Jones, P. and Samatova, N.}, year={2017} }
 @article{karpatne_atluri_faghmous_steinbach_banerjee_ganguly_shekhar_samatova_kumar_2017, title={Theory-guided data science: A new paradigm for scientific discovery from data}, volume={29}, DOI={10.1109/tkde.2017.2720168}, number={10}, journal={IEEE Transactions on Knowledge and Data Engineering}, author={Karpatne, A. and Atluri, G. and Faghmous, J. H. and Steinbach, M. and Banerjee, A. and Ganguly, A. and Shekhar, S. and Samatova, N. and Kumar, V.}, year={2017}, pages={2318–2331} }
 @inproceedings{jones_medd_ramakrishnan_shah_keyton_samatova_2017, title={Towards automatic linkage of knowledge worker's claims with associated evidence from screenshots}, DOI={10.1109/bigdataservice.2017.21}, booktitle={2017 Third IEEE International Conference on Big Data Computing Service and Applications (IEEE BigDataService 2017)}, author={Jones, P. and Medd, D. and Ramakrishnan, S. and Shah, R. and Keyton, J. and Samatova, N.}, year={2017}, pages={17–22} }
 @inproceedings{zhang_tang_harenberg_byna_zou_devendran_martin_wu_dong_klasky_et al._2016, title={AMRZone: A runtime AMR data sharing framework for scientific applications}, DOI={10.1109/ccgrid.2016.62}, booktitle={2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid)}, author={Zhang, W. Z. and Tang, H. J. and Harenberg, S. and Byna, S. and Zou, X. C. and Devendran, D. and Martin, D. F. and Wu, K. S. and Dong, B. and Klasky, S. and et al.}, year={2016}, pages={116–125} }
 @inbook{chaudhary_gonzalez_bello_angus_desai_harenberg_doraiswamy_semazzi_kumar_samatova_2016, title={Causality-Guided Feature Selection}, ISBN={9783319495859 9783319495866}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-49586-6_26}, DOI={10.1007/978-3-319-49586-6_26}, booktitle={Advanced Data Mining and Applications}, publisher={Springer International Publishing}, author={Chaudhary, Mandar S. and Gonzalez, Doel L. and Bello, Gonzalo A. and Angus, Michael P. and Desai, Dhara and Harenberg, Steve and Doraiswamy, P. Murali and Semazzi, Fredrick H. M. and Kumar, Vipin and Samatova, Nagiza F.}, year={2016}, pages={391–405} }
 @inbook{bello_harenberg_agrawal_samatova_2016, title={Community Detection in Dynamic Attributed Graphs}, ISBN={9783319495859 9783319495866}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-49586-6_22}, DOI={10.1007/978-3-319-49586-6_22}, booktitle={Advanced Data Mining and Applications}, publisher={Springer International Publishing}, author={Bello, Gonzalo A. and Harenberg, Steve and Agrawal, Abhishek and Samatova, Nagiza F.}, year={2016}, pages={329–344} }
 @inproceedings{zhang_tang_ranshous_byna_martin_wu_dong_klasky_samatova_2016, title={Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications}, DOI={10.1109/bigdata.2016.7840743}, booktitle={2016 IEEE International Conference on Big Data (Big Data)}, author={Zhang, W. Z. and Tang, H. J. and Ranshous, S. and Byna, S. and Martin, D. F. and Wu, K. S. and Dong, B. and Klasky, S. and Samatova, N. F.}, year={2016}, pages={1359–1366} }
 @inproceedings{tang_byna_harenberg_zhang_zou_martin_dong_devendran_wu_trebotich_et al._2016, title={In situ storage layout optimization for AMR spatio-temporal read accesses}, DOI={10.1109/icpp.2016.53}, booktitle={Proceedings 45th international conference on parallel processing - icpp 2016}, author={Tang, H. J. and Byna, S. and Harenberg, S. and Zhang, W. Z. and Zou, X. C. and Martin, D. F. and Dong, B. and Devendran, D. and Wu, K. S. and Trebotich, D. and et al.}, year={2016}, pages={406–415} }
 @inbook{harenberg_seay_bello_chirkova_doraiswamy_samatova_2016, title={Knowledge-Guided Maximal Clique Enumeration}, ISBN={9783319495859 9783319495866}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-49586-6_43}, DOI={10.1007/978-3-319-49586-6_43}, booktitle={Advanced Data Mining and Applications}, publisher={Springer International Publishing}, author={Harenberg, Steve and Seay, Ramona G. and Bello, Gonzalo A. and Chirkova, Rada Y. and Doraiswamy, P. Murali and Samatova, Nagiza F.}, year={2016}, pages={604–618} }
 @article{chen_samatova_stallmann_hendrix_ying_2016, title={On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems}, volume={609}, DOI={10.1016/j.tcs.2015.10.031}, journal={Theoretical Computer Science}, author={Chen, W. B. and Samatova, N. F. and Stallmann, M. F. and Hendrix, W. and Ying, W. Q.}, year={2016}, pages={434–442} }
 @inproceedings{tang_byna_harenberg_zou_zhang_wu_dong_rubel_bouchard_klasky_et al._2016, title={Usage pattern-driven dynamic data layout reorganization}, DOI={10.1109/ccgrid.2016.15}, booktitle={2016 16th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid)}, author={Tang, H. J. and Byna, S. and Harenberg, S. and Zou, X. C. and Zhang, W. Z. and Wu, K. S. and Dong, B. and Rubel, O. and Bouchard, K. and Klasky, S. and et al.}, year={2016}, pages={356–365} }
 @article{chen_schmidt_tian_samatova_zhang_2015, title={An efficient algorithm for pairwise local alignment of protein interaction networks}, volume={13}, DOI={10.1142/s0219720015500031}, number={2}, journal={Journal of Bioinformatics and Computational Biology}, author={Chen, W. B. and Schmidt, M. and Tian, W. H. and Samatova, N. F. and Zhang, S. H.}, year={2015} }
 @misc{ranshous_shen_koutra_harenberg_faloutsos_samatova_2015, title={Anomaly detection in dynamic networks: A survey}, volume={7}, DOI={10.1002/wics.1347}, number={3}, journal={Wiley Interdisciplinary Reviews: Computational Statistics}, author={Ranshous, S. and Shen, S. T. and Koutra, D. and Harenberg, S. and Faloutsos, C. and Samatova, N. F.}, year={2015}, pages={223–247} }
 @inproceedings{zhang_tang_zou_harenberg_liu_klasky_samatova_2015, title={Exploring memory hierarchy to improve scientific data read performance}, DOI={10.1109/cluster.2015.18}, booktitle={2015 ieee international conference on cluster computing - cluster 2015}, author={Zhang, W. Z. and Tang, H. J. and Zou, X. C. and Harenberg, S. and Liu, Q. and Klasky, S. and Samatova, N. F.}, year={2015}, pages={66–69} }
 @article{gonzalez_angus_tetteh_bello_padmanabhan_pendse_srinivas_yu_semazzi_kumar_et al._2015, title={On the data-driven inference of modulatory networks in climate science: an application to West African rainfall}, volume={22}, DOI={10.5194/npg-22-33-2015}, number={1}, journal={Nonlinear Processes in Geophysics}, author={Gonzalez, D. L. and Angus, M. P. and Tetteh, I. K. and Bello, G. A. and Padmanabhan, K. and Pendse, S. V. and Srinivas, S. and Yu, J. and Semazzi, F. and Kumar, V. and et al.}, year={2015}, pages={33–46} }
 @inproceedings{zou_wu_boyuka_martin_byna_tang_bansal_ligocki_johansen_samatova_2015, title={Parallel in situ detection of connected components in adaptive mesh refinement data}, DOI={10.1109/ccgrid.2015.154}, booktitle={2015 15th ieee/acm international symposium on cluster, cloud and grid computing}, author={Zou, X. C. and Wu, K. S. and Boyuka, D. A. and Martin, D. F. and Byna, S. and Tang, H. J. and Bansal, K. and Ligocki, T. J. and Johansen, H. and Samatova, N. F.}, year={2015}, pages={302–312} }
 @inbook{bello_angus_pedemane_harlalka_semazzi_kumar_samatova_2015, title={Response-Guided Community Detection: Application to Climate Index Discovery}, ISBN={9783319235240 9783319235257}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-23525-7_45}, DOI={10.1007/978-3-319-23525-7_45}, booktitle={Machine Learning and Knowledge Discovery in Databases}, publisher={Springer International Publishing}, author={Bello, Gonzalo A. and Angus, Michael and Pedemane, Navya and Harlalka, Jitendra K. and Semazzi, Fredrick H. M. and Kumar, Vipin and Samatova, Nagiza F.}, year={2015}, pages={736–751} }
 @inproceedings{boyuka_tang_bansal_zou_klasky_samatova_2015, title={The hyperdyadic index and generalized indexing and query with PIQUE}, DOI={10.1145/2791347.2791374}, booktitle={Proceedings of the 27th International Conference on Scientific and Statistical Database Management}, author={Boyuka, D. A. and Tang, H. J. and Bansal, K. and Zou, X. C. and Klasky, S. and Samatova, N. F.}, year={2015} }
 @article{harenberg_bello_gjeltema_ranshous_harlalka_seay_padmanabhan_samatova_2014, title={Community detection in large-scale networks: a survey and empirical evaluation}, volume={6}, ISSN={1939-5108}, url={http://dx.doi.org/10.1002/WICS.1319}, DOI={10.1002/WICS.1319}, number={6}, journal={Wiley Interdisciplinary Reviews: Computational Statistics}, publisher={Wiley}, author={Harenberg, Steve and Bello, Gonzalo and Gjeltema, L. and Ranshous, Stephen and Harlalka, Jitendra and Seay, Ramona and Padmanabhan, Kanchana and Samatova, Nagiza}, year={2014}, month={Jul}, pages={426–439} }
 @article{lakshminarasimhan_zou_boyuka_pendse_jenkins_vishwanath_papka_klasky_samatova_2014, title={DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance}, volume={17}, DOI={10.1007/s10586-014-0358-z}, number={4}, journal={Cluster Computing-The Journal of Networks Software Tools and Applications}, author={Lakshminarasimhan, S. and Zou, X. C. and Boyuka, D. A. and Pendse, S. V. and Jenkins, J. and Vishwanath, V. and Papka, M. E. and Klasky, S. and Samatova, N. F.}, year={2014}, pages={1101–1119} }
 @article{liess_kumar_snyder_kawale_steinhaeuser_semazzi_ganguly_samatova_kumar_2014, title={Different modes of variability over the Tasman Sea: Implications for regional climate}, volume={27}, DOI={10.1175/jcli-d-13-00713.1}, number={22}, journal={Journal of Climate}, author={Liess, S. and Kumar, A. and Snyder, P. K. and Kawale, J. and Steinhaeuser, K. and Semazzi, F. H. M. and Ganguly, A. R. and Samatova, N. F. and Kumar, V.}, year={2014}, pages={8466–8486} }
 @inbook{zou_lakshminarasimhan_boyuka_ranshous_tang_klasky_samatova_2014, title={Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes}, ISBN={9783319098722 9783319098739}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-09873-9_56}, DOI={10.1007/978-3-319-09873-9_56}, booktitle={Lecture Notes in Computer Science}, publisher={Springer International Publishing}, author={Zou, Xiaocheng and Lakshminarasimhan, Sriram and Boyuka, David A., II and Ranshous, Stephen and Tang, Houjun and Klasky, Scott and Samatova, Nagiza F.}, year={2014}, pages={668–679} }
 @article{liu_logan_tian_abbasi_podhorszki_choi_klasky_tchoua_lofstead_oldfield_et al._2014, title={Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks}, volume={26}, DOI={10.1002/cpe.3125}, number={7}, journal={Concurrency and Computation-Practice & Experience}, author={Liu, Q. and Logan, J. and Tian, Y. and Abbasi, H. and Podhorszki, N. and Choi, J. Y. and Klasky, S. and Tchoua, R. and Lofstead, J. and Oldfield, R. and et al.}, year={2014}, pages={1453–1473} }
 @inbook{tang_zou_jenkins_boyuka_ranshous_kimpe_klasky_samatova_2014, title={Improving Read Performance with Online Access Pattern Analysis and Prefetching}, ISBN={9783319098722 9783319098739}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-09873-9_21}, DOI={10.1007/978-3-319-09873-9_21}, booktitle={Lecture Notes in Computer Science}, publisher={Springer International Publishing}, author={Tang, Houjun and Zou, Xiaocheng and Jenkins, John and Boyuka, David A., II and Ranshous, Stephen and Kimpe, Dries and Klasky, Scott and Samatova, Nagiza F.}, year={2014}, pages={246–257} }
 @article{jenkins_dinan_balaji_peterka_samatova_thakur_2014, title={Processing MPI derived datatypes on noncontiguous GPU-resident data}, volume={25}, DOI={10.1109/tpds.2013.234}, number={10}, journal={IEEE Transactions on Parallel and Distributed Systems}, author={Jenkins, J. and Dinan, J. and Balaji, P. and Peterka, T. and Samatova, N. F. and Thakur, R.}, year={2014}, pages={2627–2637} }
 @inbook{jenkins_zou_tang_kimpe_ross_samatova_2014, title={RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication}, ISBN={9783319075174 9783319075181}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-07518-1_19}, DOI={10.1007/978-3-319-07518-1_19}, booktitle={Lecture Notes in Computer Science}, publisher={Springer International Publishing}, author={Jenkins, John and Zou, Xiaocheng and Tang, Houjun and Kimpe, Dries and Ross, Robert and Samatova, Nagiza F.}, year={2014}, pages={296–313} }
 @article{chen_chen_samatova_peng_wang_tang_2014, title={Solving the maximum duo-preservation string mapping problem with linear programming}, volume={530}, DOI={10.1016/j.tcs.2014.02.017}, journal={Theoretical Computer Science}, author={Chen, W. B. and Chen, Z. Z. and Samatova, N. F. and Peng, L. X. and Wang, J. X. and Tang, M. B.}, year={2014}, pages={1–11} }
 @article{faghmous_banerjee_shekhar_steinbach_kumar_ganguly_samatova_2014, title={Theory-guided data science for climate change}, volume={47}, DOI={10.1109/mc.2014.335}, number={11}, journal={Computer}, author={Faghmous, J. H. and Banerjee, A. and Shekhar, S. and Steinbach, M. and Kumar, V. and Ganguly, A. R. and Samatova, N.}, year={2014}, pages={74–78} }
 @inproceedings{boyuka_lakshminarasimhan_zou_gong_jenkins_schendel_podhorszki_liu_klasky_samatova_2014, title={Transparent in situ data transformations in ADIOS}, DOI={10.1109/ccgrid.2014.73}, booktitle={2014 14th ieee/acm international symposium on cluster, cloud and grid computing (ccgrid)}, author={Boyuka, D. A. and Lakshminarasimhan, S. and Zou, X. C. and Gong, Z. H. and Jenkins, J. and Schendel, E. R. and Podhorszki, N. and Liu, Q. and Klasky, S. and Samatova, N. F.}, year={2014}, pages={256–266} }
 @inproceedings{schendel_harenberg_tang_vishwanath_papka_samatova_2013, title={A generic high-performance method for deinterleaving scientific data}, volume={8097}, DOI={10.1007/978-3-642-40047-6_58}, booktitle={Euro-par 2013 parallel processing}, author={Schendel, E. R. and Harenberg, S. and Tang, H. J. and Vishwanath, V. and Papka, M. E. and Samatova, N. F.}, year={2013}, pages={571–582} }
 @article{kawale_liess_kumar_steinbach_snyder_kumar_ganguly_samatova_semazzi_2013, title={A graph-based approach to find teleconnections in climate data}, volume={6}, ISSN={1932-1864}, url={http://dx.doi.org/10.1002/SAM.11181}, DOI={10.1002/SAM.11181}, number={3}, journal={Statistical Analysis and Data Mining}, publisher={Wiley}, author={Kawale, Jaya and Liess, Stefan and Kumar, Arjun and Steinbach, Michael and Snyder, Peter and Kumar, Vipin and Ganguly, Auroop R. and Samatova, Nagiza F. and Semazzi, Fredrick}, year={2013}, month={Apr}, pages={158–179} }
 @inbook{jenkins_arkatkar_lakshminarasimhan_boyuka_schendel_shah_ethier_chang_chen_kolla_et al._2013, title={ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying}, ISBN={9783642412202 9783642412219}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-41221-9_4}, DOI={10.1007/978-3-642-41221-9_4}, booktitle={Transactions on Large-Scale Data- and Knowledge-Centered Systems X}, publisher={Springer Berlin Heidelberg}, author={Jenkins, John and Arkatkar, Isha and Lakshminarasimhan, Sriram and Boyuka, David A., II and Schendel, Eric R. and Shah, Neil and Ethier, Stephane and Chang, Choong-Seock and Chen, Jackie and Kolla, Hemanth and et al.}, year={2013}, pages={95–114} }
 @article{atluri_padmanabhan_fang_steinbach_petrella_lim_macdonald_samatova_doraiswamy_kumar_2013, title={Complex biomarker discovery in neuroimaging data: Finding a needle in a haystack}, volume={3}, ISSN={2213-1582}, url={http://dx.doi.org/10.1016/J.NICL.2013.07.004}, DOI={10.1016/J.NICL.2013.07.004}, journal={NeuroImage: Clinical}, publisher={Elsevier BV}, author={Atluri, Gowtham and Padmanabhan, Kanchana and Fang, Gang and Steinbach, Michael and Petrella, Jeffrey R. and Lim, Kelvin and MacDonald, Angus, III and Samatova, Nagiza F. and Doraiswamy, P. Murali and Kumar, Vipin}, year={2013}, pages={123–131} }
 @inproceedings{gonzalez_pendse_padmanabhan_angus_tetteh_srinivas_villanes_semazzi_kumar_samatova_2013, title={Coupled heterogeneous association rule mining (CHARM): Application toward inference of modulatory climate relationships}, DOI={10.1109/icdm.2013.142}, booktitle={2013 ieee 13th international conference on data mining (icdm)}, author={Gonzalez, D. L. and Pendse, S. V. and Padmanabhan, K. and Angus, M. P. and Tetteh, I. K. and Srinivas, S. and Villanes, A. and Semazzi, F. and Kumar, V. and Samatova, N. F.}, year={2013}, pages={1055–1060} }
 @article{chen_hendrix_guan_tetteh_choudhary_semazzi_samatova_2013, title={Discovery of extreme events-related communities in contrasting groups of physical system networks}, volume={27}, DOI={10.1007/s10618-012-0289-3}, number={2}, journal={Data Mining and Knowledge Discovery}, author={Chen, Z. Z. and Hendrix, W. and Guan, H. and Tetteh, I. K. and Choudhary, A. and Semazzi, F. and Samatova, N. F.}, year={2013}, pages={225–258} }
 @article{tian_samatova_2013, title={Global alignment of pairwise protein interaction networks for maximal common conserved patterns}, DOI={10.1155/2013/670623}, journal={International Journal of Genomics}, author={Tian, W. H. and Samatova, N. F.}, year={2013} }
 @article{lakshminarasimhan_shah_ethier_ku_chang_klasky_latham_ross_samatova_2013, title={ISABELA for effective in situ compression of scientific data}, volume={25}, DOI={10.1002/cpe.2887}, number={4}, journal={Concurrency and Computation-Practice & Experience}, author={Lakshminarasimhan, S. and Shah, N. and Ethier, S. and Ku, S. H. and Chang, C. S. and Klasky, S. and Latham, R. and Ross, R. and Samatova, N. F.}, year={2013}, pages={524–540} }
 @inproceedings{gong_boyuka_zou_liu_podhorszki_klasky_ma_samatova_2013, title={PARLO: Parallel run-time layout optimization for scientific data explorations with heterogeneous access patterns}, DOI={10.1109/ccgrid.2013.58}, booktitle={Proceedings of the 2013 13th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID 2013)}, author={Gong, Z. H. and Boyuka, D. A. and Zou, X. C. and Liu, Q. and Podhorszki, N. and Klasky, S. and Ma, X. S. and Samatova, N. F.}, year={2013}, pages={343–351} }
 @inbook{jenkins_arkatkar_lakshminarasimhan_shah_schendel_ethier_chang_chen_kolla_klasky_et al._2012, title={Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying}, ISBN={9783642325960 9783642325977}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-32597-7_2}, DOI={10.1007/978-3-642-32597-7_2}, booktitle={Lecture Notes in Computer Science}, publisher={Springer Berlin Heidelberg}, author={Jenkins, John and Arkatkar, Isha and Lakshminarasimhan, Sriram and Shah, Neil and Schendel, Eric R. and Ethier, Stephane and Chang, Choong-Seock and Chen, Jacqueline H. and Kolla, Hemanth and Klasky, Scott and et al.}, year={2012}, pages={16–30} }
 @inproceedings{jenkins_schendel_lakshminarasimhan_boyuka_rogers_ethier_ross_klasky_samatova_2012, title={Byte-precision level of detail processing for variable precision analytics}, DOI={10.1109/sc.2012.26}, booktitle={International conference for high performance computing networking}, author={Jenkins, J. and Schendel, E. R. and Lakshminarasimhan, S. and Boyuka, D. A. and Rogers, T. and Ethier, S. and Ross, R. and Klasky, S. and Samatova, N. F.}, year={2012} }
 @article{chen_hendrix_samatova_2012, title={Community-based anomaly detection in evolutionary networks}, volume={39}, DOI={10.1007/s10844-011-0183-2}, number={1}, journal={Journal of Intelligent Information Systems}, author={Chen, Z. Z. and Hendrix, W. and Samatova, N. F.}, year={2012}, pages={59–85} }
 @article{padmanabhan_wang_samatova_2012, title={Functional annotation of hierarchical modularity}, volume={7}, DOI={10.1371/journal.pone.0033744}, number={4}, journal={PLoS One}, author={Padmanabhan, K. and Wang, K. Y. and Samatova, N. F.}, year={2012} }
 @article{meleshko_samatova_melechko_2012, title={Group analysis of the thin film dewetting equation}, volume={47}, DOI={10.1016/j.ijnonlinmec.2011.08.005}, number={1}, journal={International Journal of Non-linear Mechanics}, author={Meleshko, S. V. and Samatova, N. F. and Melechko, A. V.}, year={2012}, pages={9–13} }
 @inproceedings{gonzalez_chen_tetteh_pansombut_semazzi_kumar_melechko_samatova_2012, title={Hierarchical classifier-regression ensemble for multi-phase non-linear dynamic system response prediction: Application to climate analysis}, DOI={10.1109/icdmw.2012.133}, booktitle={12th IEEE International Conference on Data Mining Workshops (ICDMW 2012)}, author={Gonzalez, D. L. and Chen, Z. Z. and Tetteh, I. K. and Pansombut, T. and Semazzi, F. and Kumar, V. and Melechko, A. and Samatova, N. F.}, year={2012}, pages={781–788} }
 @inproceedings{schendel_jin_shah_chen_chang_ku_ethier_klasky_latham_ross_et al._2012, title={ISOBAR preconditioner for effective and high-throughput lossless data compression}, DOI={10.1109/icde.2012.114}, booktitle={2012 ieee 28th international conference on data engineering (icde)}, author={Schendel, E. R. and Jin, Y. and Shah, N. and Chen, J. and Chang, C. S. and Ku, S. H. and Ethier, S. and Klasky, S. and Latham, R. and Ross, R. and et al.}, year={2012}, pages={138–149} }
 @article{padmanabhan_wilson_rocha_wang_mihelcic_samatova_2012, title={In-silico identification of phenotype-biased functional modules}, volume={10}, DOI={10.1186/1477-5956-10-s1-s2}, journal={Proteome Science}, author={Padmanabhan, K. and Wilson, K. and Rocha, A. M. and Wang, K. Y. and Mihelcic, J. R. and Samatova, N. F.}, year={2012} }
 @inproceedings{gong_lakshminarasimhan_jenkins_kolla_ethier_chen_ross_klasky_samatova_2012, title={Multi-level layout optimization for efficient spatio-temporal queries on ISABELA-compressed data}, DOI={10.1109/ipdps.2012.83}, booktitle={2012 ieee 26th international parallel and distributed processing symposium (ipdps)}, author={Gong, Z. H. and Lakshminarasimhan, S. and Jenkins, J. and Kolla, H. and Ethier, S. and Chen, J. and Ross, R. and Klasky, S. and Samatova, N. F.}, year={2012}, pages={873–884} }
 @article{schmidt_rocha_padmanabhan_shpanskaya_banfield_scott_mihelcic_samatova_2012, title={NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems}, volume={8}, DOI={10.1371/journal.pcbi.1002490}, number={5}, journal={PLoS Computational Biology}, author={Schmidt, M. C. and Rocha, A. M. and Padmanabhan, K. and Shpanskaya, Y. and Banfield, J. and Scott, K. and Mihelcic, J. R. and Samatova, N. F.}, year={2012} }
 @inproceedings{lakshminarasimhan_kumar_liao_choudhary_kumar_samatova_2012, title={On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions}, DOI={10.1109/igcc.2012.6322265}, booktitle={2012 International Green Computing Conference (IGCC)}, author={Lakshminarasimhan, S. and Kumar, P. and Liao, W. K. and Choudhary, A. and Kumar, V. and Samatova, N. F.}, year={2012} }
 @inbook{lakshminarasimhan_shah_ethier_klasky_latham_ross_samatova_2011, title={Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data}, ISBN={9783642233999 9783642234002}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-23400-2_34}, DOI={10.1007/978-3-642-23400-2_34}, booktitle={Euro-Par 2011 Parallel Processing}, publisher={Springer Berlin Heidelberg}, author={Lakshminarasimhan, Sriram and Shah, Neil and Ethier, Stephane and Klasky, Scott and Latham, Rob and Ross, Rob and Samatova, Nagiza F.}, year={2011}, pages={366–379} }
 @article{lin_ma_feng_samatova_2011, title={Coordinating computation and I/O in massively parallel sequence search}, volume={22}, DOI={10.1109/tpds.2010.101}, number={4}, journal={IEEE Transactions on Parallel and Distributed Systems}, author={Lin, H. S. and Ma, X. S. and Feng, W. C. and Samatova, N. F.}, year={2011}, pages={529–543} }
 @article{hendrix_rocha_padmanabhan_choudhary_scott_mihelcic_samatova_2011, title={DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules}, volume={5}, DOI={10.1186/1752-0509-5-172}, journal={BMC Systems Biology}, author={Hendrix, W. and Rocha, A. M. and Padmanabhan, K. and Choudhary, A. and Scott, K. and Mihelcic, J. R. and Samatova, N. F.}, year={2011} }
 @article{schmidt_rocha_padmanabhan_chen_scott_mihelcic_samatova_2011, title={Efficient alpha, beta-motif finder for identification of phenotype-related functional modules}, volume={12}, DOI={10.1186/1471-2105-12-440}, journal={BMC Bioinformatics}, author={Schmidt, M. C. and Rocha, A. M. and Padmanabhan, K. and Chen, Z. Z. and Scott, K. and Mihelcic, J. R. and Samatova, N. F.}, year={2011} }
 @inbook{jenkins_arkatkar_owens_choudhary_samatova_2011, title={Lessons Learned from Exploring the Backtracking Paradigm on the GPU}, ISBN={9783642233968 9783642233975}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-23397-5_42}, DOI={10.1007/978-3-642-23397-5_42}, booktitle={Euro-Par 2011 Parallel Processing}, publisher={Springer Berlin Heidelberg}, author={Jenkins, John and Arkatkar, Isha and Owens, John D. and Choudhary, Alok and Samatova, Nagiza F.}, year={2011}, pages={425–437} }
 @article{chen_schmidt_samatova_2011, title={On the parameterized complexity of the Multi-MCT and Multi-MCST problems}, volume={21}, DOI={10.1007/s10878-009-9220-2}, number={2}, journal={Journal of Combinatorial Optimization}, author={Chen, W. B. and Schmidt, M. C. and Samatova, N. F.}, year={2011}, pages={151–158} }
 @article{belnap_pan_denef_samatova_hettich_banfield_2011, title={Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions}, volume={5}, ISSN={1751-7362 1751-7370}, url={http://dx.doi.org/10.1038/ismej.2010.200}, DOI={10.1038/ismej.2010.200}, number={7}, journal={The ISME Journal}, publisher={Springer Science and Business Media LLC}, author={Belnap, Christopher P and Pan, Chongle and Denef, Vincent J and Samatova, Nagiza F and Hettich, Robert L and Banfield, Jillian F}, year={2011}, month={Jan}, pages={1152–1161} }
 @article{li_ma_yoginath_kora_samatova_2011, title={Transparent runtime parallelization of the R scripting language}, volume={71}, DOI={10.1016/j.jpdc.2010.08.013}, number={2}, journal={Journal of Parallel and Distributed Computing}, author={Li, J. T. and Ma, X. S. and Yoginath, S. and Kora, G. and Samatova, N. F.}, year={2011}, pages={157–168} }
 @article{pan_park_mcdonald_carey_banfield_verberkmoes_hettich_samatova_2010, title={A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry}, volume={11}, journal={BMC Bioinformatics}, author={Pan, C. and Park, B. H. and McDonald, W. H. and Carey, P. A. and Banfield, J. F. and VerBerkmoes, N. C. and Hettich, R. L. and Samatova, N. F.}, year={2010} }
 @inproceedings{chen_wilson_jin_samatova_2010, title={Detecting and Tracking Community Dynamics in Evolutionary Networks}, DOI={10.1109/icdmw.2010.32}, booktitle={The 10th IEEE International Conference on Data Mining Workshops}, publisher={Los Alamitos, Calif. :  IEEE Computer Society}, author={Chen, Z and Wilson, K.A. and Jin, Y. and Samatova, N.F.}, year={2010}, pages={318–327} }
 @article{hendrix_schmidt_breimyer_samatova_2010, title={Theoretical underpinnings for maximal clique enumeration on perturbed graphs}, volume={411}, DOI={10.1016/j.tcs.2010.03.011}, number={26-28}, journal={Theoretical Computer Science}, author={Hendrix, W. and Schmidt, M. C. and Breimyer, P. and Samatova, N. F.}, year={2010}, pages={2520–2536} }
 @article{schmidt_samatova_thomas_park_2009, title={A scalable, parallel algorithm for maximal clique enumeration}, volume={69}, ISBN={0743-7315}, DOI={10.1016/j.jpdc.2009.01.003}, number={4}, journal={Journal of Parallel and Distributed Computing}, author={Schmidt, M. C. and Samatova, N. F. and Thomas, K. and Park, B. H.}, year={2009}, pages={417–428} }
 @inproceedings{breimyer_green_kumar_samatova_2009, title={BioDEAL: community generation of biological annotations}, volume={9}, booktitle={BMC Medical Informatics and Decision Making}, author={Breimyer, P. and Green, N. and Kumar, V. and Samatova, N. F.}, year={2009} }
 @inproceedings{chang_ku_diamond_lin_parker_hahm_samatova_2009, title={Compressed ion temperature gradient turbulence in diverted tokamak edge}, volume={16}, DOI={10.1063/1.3099329}, number={5}, booktitle={Physics of Plasmas}, author={Chang, C. S. and Ku, S. and Diamond, P. H. and Lin, Z. and Parker, S. and Hahm, T. S. and Samatova, N.}, year={2009} }
 @article{belnap_pan_verberkmoes_power_samatova_carver_hettich_banfield_2009, title={Cultivation and quantitative proteomic analyses of acidophilic microbial communities}, volume={4}, ISSN={1751-7362 1751-7370}, url={http://dx.doi.org/10.1038/ismej.2009.139}, DOI={10.1038/ismej.2009.139}, number={4}, journal={The ISME Journal}, publisher={Springer Science and Business Media LLC}, author={Belnap, Christopher P and Pan, Chongle and VerBerkmoes, Nathan C and Power, Mary E and Samatova, Nagiza F and Carver, Rudolf L and Hettich, Robert L and Banfield, Jillian F}, year={2009}, month={Dec}, pages={520–530} }
 @inproceedings{awekar_samatova_2009, title={Fast matching for all pairs similarity search}, DOI={10.1109/wi-iat.2009.52}, booktitle={2009 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol 1}, author={Awekar, A. and Samatova, N. F.}, year={2009}, pages={295–300} }
 @article{yang_pappas_hauser_land_chen_hurst_pan_kouvelis_typas_pelletier_et al._2009, title={Improved genome annotation for Zymomonas mobilis}, volume={27}, ISSN={1087-0156 1546-1696}, url={http://dx.doi.org/10.1038/nbt1009-893}, DOI={10.1038/nbt1009-893}, number={10}, journal={Nature Biotechnology}, publisher={Springer Science and Business Media LLC}, author={Yang, Shihui and Pappas, Katherine M and Hauser, Loren J and Land, Miriam L and Chen, Gwo-Liang and Hurst, Gregory B and Pan, Chongle and Kouvelis, Vassili N and Typas, Milton A and Pelletier, Dale A and et al.}, year={2009}, month={Oct}, pages={893–894} }
 @article{chen_schmidt_samatova_2009, title={On parameterized complexity of the Multi-MCS problem}, volume={410}, DOI={10.1016/j.tcs.2008.12.060}, number={21-23}, journal={Theoretical Computer Science}, author={Chen, W. B. and Schmidt, M. C. and Samatova, N. F.}, year={2009}, pages={2024–2032} }
 @inbook{lin_ma_li_yu_samatova_2008, title={Adaptive Request Scheduling for Parallel Scientific Web Services}, ISBN={9783540694762 9783540694977}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-540-69497-7_19}, DOI={10.1007/978-3-540-69497-7_19}, booktitle={Lecture Notes in Computer Science}, publisher={Springer Berlin Heidelberg}, author={Lin, Heshan and Ma, Xiaosong and Li, Jiangtian and Yu, Ting and Samatova, Nagiza}, year={2008}, month={Aug}, pages={276–294} }
 @article{pan_oda_lankford_zhang_samatova_pelletier_harwood_hettich_2008, title={Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics}, volume={7}, DOI={10.1074/mcp.M700147-MCP200}, number={5}, journal={Molecular & Cellular Proteomics}, author={Pan, C. and Oda, Y. and Lankford, P. K. and Zhang, B. and Samatova, N. F. and Pelletier, D. A. and Harwood, C. S. and Hettich, R. L.}, year={2008}, pages={938–948} }
 @article{zhang_park_karpinets_samatova_2008, title={From pull-down data to protein interaction networks and complexes with biological relevance}, volume={24}, DOI={10.1093/bioinformatics/btn036}, number={7}, journal={Bioinformatics}, author={Zhang, B. and Park, B. H. and Karpinets, T. and Samatova, N. F.}, year={2008}, pages={979–986} }
 @inbook{abu-khzam_rizk_abdallah_samatova_2008, title={The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms}, ISBN={9783540681052 9783540681113}, url={http://dx.doi.org/10.1007/978-3-540-68111-3_19}, DOI={10.1007/978-3-540-68111-3_19}, booktitle={Parallel Processing and Applied Mathematics}, publisher={Springer Berlin Heidelberg}, author={Abu-Khzam, Faisal N. and Rizk, Mohamad A. and Abdallah, Deema A. and Samatova, Nagiza F.}, year={2008}, month={May}, pages={170–179} }
 @article{park_ostrouchov_samatova_2007, title={Sampling streaming data with replacement}, volume={52}, ISSN={0167-9473}, url={http://dx.doi.org/10.1016/j.csda.2007.03.010}, DOI={10.1016/j.csda.2007.03.010}, number={2}, journal={Computational Statistics & Data Analysis}, publisher={Elsevier BV}, author={Park, Byung-Hoon and Ostrouchov, George and Samatova, Nagiza F.}, year={2007}, month={Oct}, pages={750–762} }
 @article{zhang_verberkmoes_langston_uberbacher_hettich_samatova_2006, title={Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics}, volume={5}, ISSN={1535-3893 1535-3907}, url={http://dx.doi.org/10.1021/pr0600273}, DOI={10.1021/pr0600273}, number={11}, journal={Journal of Proteome Research}, publisher={American Chemical Society (ACS)}, author={Zhang, Bing and VerBerkmoes, Nathan C. and Langston, Michael A. and Uberbacher, Edward and Hettich, Robert L. and Samatova, Nagiza F.}, year={2006}, month={Nov}, pages={2909–2918} }
 @article{austin_allen_mccollum_dar_wilgus_sayler_samatova_cox_simpson_2006, title={Gene network shaping of inherent noise spectra}, volume={439}, ISSN={0028-0836 1476-4687}, url={http://dx.doi.org/10.1038/nature04194}, DOI={10.1038/nature04194}, number={7076}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Austin, D. W. and Allen, M. S. and McCollum, J. M. and Dar, R. D. and Wilgus, J. R. and Sayler, G. S. and Samatova, N. F. and Cox, C. D. and Simpson, M. L.}, year={2006}, month={Feb}, pages={608–611} }
 @article{pan_kora_mcdonald_tabb_verberkmoes_hurst_pelletier_samatova_hettich_2006, title={ProRata:  A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation}, volume={78}, ISSN={0003-2700 1520-6882}, url={http://dx.doi.org/10.1021/ac060654b}, DOI={10.1021/ac060654b}, number={20}, journal={Analytical Chemistry}, publisher={American Chemical Society (ACS)}, author={Pan, Chongle and Kora, Guruprasad and McDonald, W. Hayes and Tabb, David L. and VerBerkmoes, Nathan C. and Hurst, Gregory B. and Pelletier, Dale A. and Samatova, Nagiza F. and Hettich, Robert L.}, year={2006}, month={Oct}, pages={7121–7131} }
 @article{pan_kora_tabb_pelletier_mcdonald_hurst_hettich_samatova_2006, title={Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics}, volume={78}, ISSN={0003-2700 1520-6882}, url={http://dx.doi.org/10.1021/ac0606554}, DOI={10.1021/ac0606554}, number={20}, journal={Analytical Chemistry}, publisher={American Chemical Society (ACS)}, author={Pan, Chongle and Kora, Guruprasad and Tabb, David L. and Pelletier, Dale A. and McDonald, W. Hayes and Hurst, Gregory B. and Hettich, Robert L. and Samatova, Nagiza F.}, year={2006}, month={Oct}, pages={7110–7120} }
 @article{mccollum_peterson_cox_simpson_samatova_2006, title={The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior}, volume={30}, ISSN={1476-9271}, url={http://dx.doi.org/10.1016/j.compbiolchem.2005.10.007}, DOI={10.1016/j.compbiolchem.2005.10.007}, number={1}, journal={Computational Biology and Chemistry}, publisher={Elsevier BV}, author={McCollum, James M. and Peterson, Gregory D. and Cox, Chris D. and Simpson, Michael L. and Samatova, Nagiza F.}, year={2006}, month={Feb}, pages={39–49} }
 @inbook{suters_abu-khzam_zhang_symons_samatova_langston_2005, title={A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem}, ISBN={9783540280613 9783540318064}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/11533719_73}, DOI={10.1007/11533719_73}, booktitle={Lecture Notes in Computer Science}, publisher={Springer Berlin Heidelberg}, author={Suters, W. Henry and Abu-Khzam, Faisal N. and Zhang, Yun and Symons, Christopher T. and Samatova, Nagiza F. and Langston, Michael A.}, year={2005}, pages={717–727} }
 @article{yu_park_chandramohan_munavalli_geist_samatova_2005, title={In silico Discovery of Enzyme–Substrate Specificity-determining Residue Clusters}, volume={352}, ISSN={0022-2836}, url={http://dx.doi.org/10.1016/j.jmb.2005.08.008}, DOI={10.1016/j.jmb.2005.08.008}, number={5}, journal={Journal of Molecular Biology}, publisher={Elsevier BV}, author={Yu, Gong-Xin and Park, Byung-Hoon and Chandramohan, Praveen and Munavalli, Rajesh and Geist, Al and Samatova, Nagiza F.}, year={2005}, month={Oct}, pages={1105–1117} }
 @inproceedings{jenkins_arkatkar_lakshminarasimhan_boyuka_schendel_shah_ethier_chang_chen_kolla_et al., title={ALACRITY: Analytics-driven lossless data compression for rapid in-situ indexing, storing, and querying}, volume={8220}, booktitle={Transactions on large-scale data- and knowledge- centered systems x: special issue on database- and expert-systems applications}, author={Jenkins, J. and Arkatkar, I. and Lakshminarasimhan, S. and Boyuka, D. A. and Schendel, E. R. and Shah, N. and Ethier, S. and Chang, C. S. and Chen, J. and Kolla, H. and et al.}, pages={95–114} }
 @book{ranshous_shen_koutra_faloutsos_samatova, title={Anomaly detection in dynamic networks: A survey}, journal={Technical Report- Not held in TRLN member libraries}, author={Ranshous, S. and Shen, S. and Koutra, D. and Faloutsos, C. and Samatova, N. F.} }
 @article{padmanabhan_nudelman_harenberg_bello_sohn_shpanskaya_dikshit_yerramsetty_tanzi_saykin_et al., title={Characterizing gene and protein crosstalks in subjects at risk of developing Alzheimer's disease: A new computational approach}, volume={5}, number={3}, journal={Processes}, author={Padmanabhan, K. and Nudelman, K. and Harenberg, S. and Bello, G. and Sohn, D. and Shpanskaya, K. and Dikshit, P. T. and Yerramsetty, P. S. and Tanzi, R. E. and Saykin, A. J. and et al.} }
 @book{harenberg_bello_gjeltema_ranshous_harlalka_seay_padmanabhan_samatova, title={Community detection in large-scale networks: A Survey and empirical evaluation}, journal={Technical Report- Not held in TRLN member libraries}, author={Harenberg, S. and Bello, G. A. and Gjeltema, L. and Ranshous, S. and Harlalka, J. and Seay, R. and Padmanabhan, K. and Samatova, N.}, pages={2014} }
 @book{lakshminarasimhan_shah_ethier_klasky_latham_ross_n.f., title={Compressing the Incompressible with ISABELA:
In-situ Reduction of Spatio-Temporal Data}, journal={Technical Report- Not held in TRLN member libraries}, author={Lakshminarasimhan, S. and Shah, N. and Ethier, S.J and Klasky, S. and Latham, R. and Ross, R. and N.F., Samatova} }
 @inproceedings{samatova_schmidt_hendrix_breimyer_thomas_park, title={Coupling graph perturbation theory with scalable parallel algorithms for large-scale enumeration of maximal cliques in biological graphs - art. no. 012053}, volume={125}, booktitle={Scidac 2008: Scientific discovery through advanced computing}, author={Samatova, N. F. and Schmidt, M. C. and Hendrix, W. and Breimyer, P. and Thomas, K. and Park, B. H.}, pages={12053–12053} }
 @book{chen_pansombut_hendrix_gonzalez_semazzi_choudhary_kumar_melechko_samatova, title={Forecaster: Forecast Oriented Feature Elimination-based Classification of Adverse Spatio-Temporal Extremes}, author={Chen, Z. and Pansombut, T. and Hendrix, W. and Gonzalez, D. and Semazzi, F. and Choudhary, A. and Kumar, V. and Melechko, A.V. and Samatova, N.F.} }
 @book{jenkins_zou_tang_kimpe_ross_samatova, title={Parallel data layout optimization of scientific data through access-driven replication}, journal={Technical Report- Not held in TRLN member libraries}, author={Jenkins, J. P. and Zou, X. and Tang, H. and Kimpe, D. and Ross, R. and Samatova, N. F.} }