Natalie M. Clark

Works (9)

Updated: August 5th, 2023 21:16

2022 article

POPEYE intercellular localization mediates cell-specific iron deficiency responses

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.

By: D. Muhammad n, N. Clark n, S. Haque n, C. Williams n , R. Sozzani n  & T. Long n 

MeSH headings : Iron Deficiencies; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Basic Helix-Loop-Helix Transcription Factors / metabolism; Arabidopsis / metabolism; Iron / metabolism; Plant Roots / genetics; Plant Roots / metabolism
topics (OpenAlex): Plant Micronutrient Interactions and Effects; Plant Stress Responses and Tolerance; Plant nutrient uptake and metabolism
TL;DR: The findings indicate that PYE acts as a positive regulator of iron deficiency response by regulating iron bioavailability differentially across cells, which may trigger iron uptake from the surrounding rhizosphere and impact root energy metabolism. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 29, 2022

2020 article

BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots

Crook, A. D., Willoughby, A. C., Hazak, O., Okuda, S., VanDerMolen, K. R., Soyars, C. L., … Nimchuk, Z. L. (2020, December 7). Proceedings of the National Academy of Sciences, Vol. 117, pp. 32750–32756.

By: A. Crook *, A. Willoughby *, O. Hazak *, S. Okuda *, K. VanDerMolen *, C. Soyars *, P. Cattaneo *, N. Clark n ...

author keywords: Arabidopsis; receptor kinase; cell cycle; SHORT-ROOT; CLE peptide
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plant Cells / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / metabolism; Plants, Genetically Modified; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
topics (OpenAlex): Plant Molecular Biology Research; Plant Reproductive Biology; Plant nutrient uptake and metabolism
TL;DR: It is shown that key cell divisions that generate the plant root are controlled by cell-to-cell signaling peptides which act through plant-specific receptor kinases to control expression of a specific cyclinD cell cycle regulatory gene. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: January 19, 2021

2020 journal article

Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big

Annual Review of Plant Biology, 71(1), 789–816.

By: N. Clark n, L. Van den Broeck n , M. Guichard *, A. Stager *, H. Tanner *, I. Blilou *, G. Grossmann *, A. Iyer-Pascuzzi * ...

author keywords: Forster resonance energy transfer; scanning fluorescent correlation spectroscopy; microfluid devices; light sheet microscopy; imaging of macroscopic traits; multiscale imaging techniques
MeSH headings : Biology; Plant Development; Plants
topics (OpenAlex): Remote Sensing in Agriculture; Leaf Properties and Growth Measurement; Advanced Fluorescence Microscopy Techniques
TL;DR: New imaging modalities are presented and how they have enabled a better understanding of plant growth from the microscopic to the macroscopic scale are reviewed to enable unprecedented systems-level computational modeling. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, Crossref, NC State University Libraries, ORCID
Added: September 14, 2020

2019 article

tuxnet : a simple interface to process RNA sequencing data and infer gene regulatory networks

Spurney, R. J., Broeck, L. V., Clark, N. M., Fisher, A. P., Luis Balaguer, M. A., & Sozzani, R. (2019, October 1). The Plant Journal.

By: R. Spurney n, L. Broeck n , N. Clark n, A. Fisher n, M. Luis Balaguer  n & R. Sozzani n 

author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
topics (OpenAlex): Gene expression and cancer classification; Genomics and Phylogenetic Studies; Genomics and Chromatin Dynamics
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: December 9, 2019

2019 article

Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana

Powers, S. K., Holehouse, A. S., Korasick, D. A., Schreiber, K. H., Clark, N. M., Jing, H., … Strader, L. C. (2019, August 14). Molecular Cell, Vol. 76, pp. 177-+.

By: S. Powers *, A. Holehouse *, D. Korasick *, K. Schreiber*, N. Clark n, H. Jing *, R. Emenecker *, S. Han * ...

MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; Cytoplasm / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / pharmacology; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / genetics; Intrinsically Disordered Proteins / metabolism; Plant Growth Regulators / pharmacology; Protein Binding; Protein Folding; Protein Interaction Domains and Motifs; Structure-Activity Relationship; Transcription Factors / chemistry; Transcription Factors / genetics; Transcription Factors / metabolism
topics (OpenAlex): Plant Molecular Biology Research; Plant Reproductive Biology; Plant Stress Responses and Tolerance
TL;DR: The data suggest a model in which ARF nucleo-cytoplasmic partitioning regulates auxin responsiveness, providing a mechanism for cellular competence for auxin signaling. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: October 21, 2019

2019 article

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

Clark, N. M., Buckner, E., Fisher, A. P., Nelson, E. C., Nguyen, T. T., Simmons, A. R., … Sozzani, R. (2019, December 6). Nature Communications, Vol. 10.

By: N. Clark n, E. Buckner n, A. Fisher n, E. Nelson n, T. Nguyen n, A. Simmons *, M. Luis Balaguer  n, T. Butler-Smith n ...

MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Asymmetric Cell Division / genetics; Asymmetric Cell Division / physiology; Cell Differentiation; Cell Division; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Stem Cells / cytology; Stem Cells / metabolism; Transcription Factors / metabolism; Transcriptome; Ubiquitination / genetics; Ubiquitins / genetics
topics (OpenAlex): Plant Molecular Biology Research; Light effects on plants; Plant nutrient uptake and metabolism
TL;DR: In the Arabidopsis root, a stem-cell-ubiquitous gene, TESMIN-LIKE CXC2 (TCX2), controls stem cell division by regulating stem cell-type specific networks and orchestrates the coordinated division of different stem cell types. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: December 30, 2019

2017 article

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells

Balaguer, M. A. D., Fisher, A. P., Clark, N. M., Fernandez-Espinosa, M. G., Moller, B. K., Weijers, D., … al. (2017, August 21). Proceedings of the National Academy of Sciences, Vol. 114, pp. E7632–7640.

By: M. Balaguer  n, A. Fisher n, N. Clark n, M. Fernandez-Espinosa*, B. Moller *, D. Weijers *, J. Lohmann *, C. Williams n  ...

author keywords: root stem cell; root development; cell-type expression profile; gene regulatory network; modeling
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / genetics; Stem Cells / metabolism; Transcription Factors / genetics; Transcriptome / genetics
topics (OpenAlex): Plant Molecular Biology Research; Plant nutrient uptake and metabolism; Chromosomal and Genetic Variations
TL;DR: A computational pipeline that uses gene expression datasets for inferring relationships among genes and predicting their importance and a gene regulatory network inference algorithm that combines clustering with dynamic Bayesian network inference that identified PERIANTHIA as an important molecular regulator of quiescent center function. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2016 journal article

Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy

Elife, 5.

By: N. Clark, E. Hinde, C. Winter, A. Fisher, G. Crosti, I. Blilou, E. Gratton, P. Benfey, R. Sozzani 

Source: NC State University Libraries
Added: August 6, 2018

2014 review

Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root

[Review of ]. Frontiers in Plant Science, 5.

By: N. Clark, M. Balaguer & R. Sozzani 

Source: NC State University Libraries
Added: August 6, 2018

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