Patrick Perkins

Works (2)

Updated: July 5th, 2023 15:21

2019 journal article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC Genomics, 20(S5).

By: P. Perkins n, S. Mazzoni-Putman, A. Stepanova n , J. Alonso  n & S. Heber n 

author keywords: Ribo-seq; Next-generation sequencing; Data analysis; Web application
MeSH headings : Computer Graphics; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Humans; Protein Biosynthesis; Quality Control; RNA, Messenger / genetics; RNA, Messenger / metabolism; Ribosomes / metabolism; Sequence Analysis, RNA; Software; Transcriptome; Web Browser
TL;DR: RiboStreamR is presented, a comprehensive Ribo-seq quality control (QC) platform in the form of an R Shiny web application that provides visualization and analysis tools for various Ribe-seq QC metrics, including read length distribution, read periodicity, and translational efficiency. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, Crossref
Added: July 1, 2019

2017 conference paper

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

International conference on computational advances in bio and medical.

By: P. Perkins n & S. Heber n 

TL;DR: RiboStreamR provides visualization and analysis tools for various Ribo-seq QC metrics, including read length distribution, read periodicity, and translational efficiency, and the platform's environment is centered on providing a user-friendly experience, and includes numerous options for graphical customization and report generation. (via Semantic Scholar)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2025) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.