Patrick Perkins

Works (2)

Updated: July 5th, 2023 15:21

2019 journal article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC Genomics, 20(S5).

By: P. Perkins n, S. Mazzoni-Putman  n, A. Stepanova n , J. Alonso n  & S. Heber n 

author keywords: Ribo-seq; Next-generation sequencing; Data analysis; Web application
MeSH headings : Computer Graphics; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Humans; Protein Biosynthesis; Quality Control; RNA, Messenger / genetics; RNA, Messenger / metabolism; Ribosomes / metabolism; Sequence Analysis, RNA; Software; Transcriptome; Web Browser
topics (OpenAlex): RNA and protein synthesis mechanisms; RNA modifications and cancer; Genomics and Phylogenetic Studies
TL;DR: RiboStreamR is presented, a comprehensive Ribo-seq quality control (QC) platform in the form of an R Shiny web application that provides visualization and analysis tools for various Ribe-seq QC metrics, including read length distribution, read periodicity, and translational efficiency. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries, Crossref
Added: July 1, 2019

2017 article

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

Perkins, P., & Heber, S. (2017, October 1). International Conference on Computational Advances in Bio and Medical.

By: P. Perkins n & S. Heber n 

topics (OpenAlex): Genomics and Phylogenetic Studies; Chromosomal and Genetic Variations
TL;DR: RiboStreamR provides visualization and analysis tools for various Ribo-seq QC metrics, including read length distribution, read periodicity, and translational efficiency, and the platform's environment is centered on providing a user-friendly experience, and includes numerous options for graphical customization and report generation. (via Semantic Scholar)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

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