Paul Wollenzien

Gagnon, K. T., Biswas, S., Zhang, X., Brown, B. A., II, Wollenzien, P., Mattos, C., & Maxwell, E. S. (2012). Structurally Conserved Nop56/58 N-terminal Domain Facilitates Archaeal Box C/D Ribonucleoprotein-guided Methyltransferase Activity. JOURNAL OF BIOLOGICAL CHEMISTRY, 287(23), 19418–19428. https://doi.org/10.1074/jbc.m111.323253

Huggins, W., Ghosh, S. K., & Wollenzien, P. (2009). Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome. BMC Structural Biology, 9.

Huggins, W., Shapkina, T., & Wollenzien, P. (2007). Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking. RNA, 13(11), 2000–2011. https://doi.org/10.1261/rna.656907

Huggins, W., Ghosh, S. K., Nanda, K., & Wollenzien, P. (2005). Internucleotide movements during formation of 16 S rRNA-rRNA photocrosslinks and their connection to the 30 S subunit conformational dynamics. JOURNAL OF MOLECULAR BIOLOGY, 354(2), 358–374. https://doi.org/10.1016/j.jmb.2005.09.060

Huggins, W., & Wollenzien, P. (2004). A 16S rRNA-tRNA product containing a nucleotide phototrimer and specific for tRNA in the P/E hybrid state in the Escherichia coli ribosome. NUCLEIC ACIDS RESEARCH, 32(22), 6548–6556. https://doi.org/10.1093/nar/gkh1001

Shapkina, T., Lappi, S., Franzen, S., & Wollenzien, P. (2004). Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome. NUCLEIC ACIDS RESEARCH, 32(4), 1518–1526. https://doi.org/10.1093/nar/gkh320

Nanda, K., & Wollenzien, P. (2004). Pattern of 4-thiouridine-induced cross-linking in 16S ribosomal RNA in the Escherichia coli 30S subunit. BIOCHEMISTRY, 43(28), 8923–8934. https://doi.org/10.1021/bi049702h

Zhirnov, O. V., & Wollenzien, P. (2003). Action spectra for UV-light induced RNA-RNA crosslinking in 16S ribosomal RNA in the ribosome. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES, 2(6), 688–693. https://doi.org/10.1039/b208677h

Noah, J. W., Shapkina, T. G., Nanda, K., Huggins, W., & Wollenzien, P. (2003). Conformational change in the 16S rRNA in the Escherichia coli 70S ribosome induced by P/P- and P/E-site tRNA(Phe) binding. BIOCHEMISTRY, 42(49), 14386–14396. https://doi.org/10.1021/bi035369q

Juzumiene, D. I., & Wollenzien, P. (2001). Arrangement of the central pseudoknot region of 16S rRNA in the 30S ribosomal subunit determined by site-directed 4-thiouridine crosslinking. RNA, 7(1), 71–84. https://doi.org/10.1017/S1355838201001728

Dolan, M. A., Babin, P., & Wollenzien, P. (2001). Construction and analysis of base-paired regions of the 16S rRNA in the 30S ribosomal subunit determined by constraint satisfaction molecular modelling. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 19(6), 495–513. https://doi.org/10.1016/S1093-3263(00)00097-8

Juzumiene, D., Shapkina, T., Kirillov, S., & Wollenzien, P. (2001). Short-range RNA-RNA crosslinking methods to determine rRNA structure and interactions. METHODS, 25(3), 333–343. https://doi.org/10.1006/meth.2001.1245

Shapkina, T. G., Dolan, M. A., Babin, P., & Wollenzien, P. (2000). Initiation factor 3-induced structural changes in the 30 S ribosomal subunit and in complexes containing tRNA(f)(Met) and mRNA. JOURNAL OF MOLECULAR BIOLOGY, 299(3), 615–628. https://doi.org/10.1006/jmbi.2000.3774

Juzumiene, D. I., & Wollenzien, P. (2000). Organization of the 16S rRNA around its 5 ' terminus determined by photochemical crosslinking in the 30S ribosomal subunit. RNA, 6(1), 26–40. https://doi.org/10.1017/S1355838200991659

Mundus, D., & Wollenzien, P. (2000). Structure determination by directed photo-cross-linking in large RNA molecules with site-specific psoralen. In R.W. Skaggs & J. Schilfgaarde (Eds.), RNA-ligland interactions: Part B (Vol. 318, pp. 104–118). https://doi.org/10.1016/s0076-6879(00)18047-4

Noah, J. W., Shapkina, T., & Wollenzien, P. (2000). UV-induced crosslinks in the 16S rRNAs of Escherichia coli, Bacillus subtilis and Thermus aquaticus and their implications for ribosome structure and photochemistry. NUCLEIC ACIDS RESEARCH, 28(19), 3785–3792. https://doi.org/10.1093/nar/28.19.3785

Noah, J. W., Dolan, M. A., Babin, P., & Wollenzien, P. (1999). Effects of tetracycline and spectinomycin on the tertiary structure of ribosomal RNA in the Escherichia coli 30 S ribosomal subunit. JOURNAL OF BIOLOGICAL CHEMISTRY, 274(23), 16576–16581. https://doi.org/10.1074/jbc.274.23.16576

Babin, P., Dolan, M., Wollenzien, P., & Gutell, R. R. (1999). Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling. RNA, 5(11), 1430–1439. https://doi.org/10.1017/S1355838299990659

Noah, J. W., & Wollenzien, P. (1998). Dependence of the 16S rRNA decoding region structure on Mg2+, subunit association, and temperature. BIOCHEMISTRY, 37(44), 15442–15448. https://doi.org/10.1021/bi981148m

Mundus, D., & Wollenzien, P. (1998). Neighborhood of 16S rRNA nucleotides U788/U789 in the 30S ribosomal subunit determined by site-directed crosslinking. RNA, 4(11), 1373–1385. https://doi.org/10.1017/S1355838298981134

Wilms, C., Noah, J. W., Zhong, D. G., & Wollenzien, P. L. (1997). Exact determination of UV-induced crosslinks in 16S ribosomal RNA in 30s ribosomal subunits. RNA, 3(6), 602–612.

Wilms, C., Noah, J. W., Zhong, D., & Wollenzien, P. (1997). Exact determination of UV-induced crosslinks in 16S ribosomal RNA in 30s ribosomal subunits: Erratum. RNA, 3(8), 945.