Works (227)

Updated: May 18th, 2023 05:01

2023 article

Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.

By: M. Foley, M. Walker, A. Stewart, S. O'Flaherty, E. Gentry*, S. Patel*, V. Beaty*, G. Allen n ...

Sources: Web Of Science, ORCID
Added: April 4, 2023

2023 journal article

Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism

MICROORGANISMS, 11(2).

By: S. O'Flaherty, N. Cobian n & R. Barrangou

author keywords: probiotic; prebiotic; pomegranate; lactobacilli; transcriptomic
Sources: ORCID, Web Of Science
Added: February 7, 2023

2023 journal article

Next-Generation Gene Editing - Current Opinion in Biomedical Engineering Mining Microbial Organisms to Discover and Characterize Novel CRISPR-Cas Systems

Current Opinion in Biomedical Engineering.

By: O. Raftopoulou n & R. Barrangou

Source: ORCID
Added: May 18, 2023

2022 article

Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing

Adler, B. A., Hessler, T., Cress, B. F., Lahiri, A., Mutalik, V. K., Barrangou, R., … Doudna, J. A. (2022, October 31). NATURE MICROBIOLOGY, Vol. 10.

By: B. Adler*, T. Hessler*, B. Cress*, A. Lahiri*, V. Mutalik*, R. Barrangou, J. Banfield*, J. Doudna*

Sources: ORCID, Web Of Science
Added: November 1, 2022

2022 journal article

CRISPR-based engineering of phages for in situ bacterial base editing

Proceedings of the National Academy of Sciences.

By: M. Nethery n, C. Hidalgo-Cantabrana n, A. Roberts n & R. Barrangou

Source: ORCID
Added: November 8, 2022

2022 journal article

Clustered Regularly Interspaced Short Palindromic Repeats Genotyping of Multidrug-Resistant Salmonella Heidelberg Strains Isolated From the Poultry Production Chain Across Brazil

FRONTIERS IN MICROBIOLOGY, 13.

By: D. Monte*, M. Nethery, H. Berman, S. Keelara, N. Lincopan, P. Fedorka-Cray, R. Barrangou, M. Landgraf

author keywords: antibiotic resistance; CRISPR; phylogeny; Salmonella Heidelberg; foodborne disease; WGS
Sources: Web Of Science, ORCID
Added: July 11, 2022

2022 article

Functional characterization of diverse type I-F CRISPR-associated transposons

Roberts, A., Nethery, M. A., & Barrangou, R. (2022, November 17). NUCLEIC ACIDS RESEARCH, Vol. 11.

By: A. Roberts, M. Nethery & R. Barrangou

Sources: ORCID, Web Of Science
Added: October 19, 2022

2022 journal article

Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(30).

By: M. Pan n, W. Morovic*, C. Hidalgo-Cantabrana n, A. Roberts, K. Walden*, Y. Goh, R. Barrangou

author keywords: CRISPR-Cas; bifidobacterium; genomics; epigenomics; probiotics
Sources: ORCID, Web Of Science
Added: July 21, 2022

2022 journal article

Metabolomic Analysis of Lactobacillus acidophilus, L. gasseri, L. crispatus, and Lacticaseibacillus rhamnosus Strains in the Presence of Pomegranate Extract

FRONTIERS IN MICROBIOLOGY, 13.

By: M. Chamberlain n, S. O'Flaherty, N. Cobian n & R. Barrangou

author keywords: metabolomics; Lactobacillus; probiotic; pomegranate extract; prebiotic
Sources: Web Of Science, ORCID
Added: June 13, 2022

2022 article

Next-Generation Foods and CRISPR Engineering

Barrangou, R. (2022, August 11).

By: R. Barrangou

Source: ORCID
Added: August 17, 2022

2022 article

RNA-targeting CRISPR-Cas13 Provides Broad-spectrum Phage Immunity

Adler, B. A., Hessler, T., Cress, B. F., Mutalik, V. K., Barrangou, R., Banfield, J., & Doudna, J. A. (2022, March 26). (Vol. 3). Vol. 3.

By: B. Adler*, T. Hessler*, B. Cress*, V. Mutalik*, R. Barrangou, J. Banfield*, J. Doudna*

Source: ORCID
Added: March 31, 2022

2022 article

Turning CRISPR on with antibiotics

Barrangou, R., & Marraffini, L. A. (2022, January 12). CELL HOST & MICROBE, Vol. 30, pp. 12–14.

By: R. Barrangou & L. Marraffini*

Sources: Web Of Science, ORCID
Added: February 14, 2022

2021 journal article

(Broken) Promises of Sustainable Food and Agriculture through New Biotechnologies: The CRISPR Case

CRISPR JOURNAL, 4(1), 25–31.

By: T. Kuiken, R. Barrangou & K. Grieger

Sources: Web Of Science, ORCID
Added: March 22, 2021

2021 article

Building a Resilient, Sustainable, and Healthier Food Supply Through Innovation and Technology

ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 12, 2021, Vol. 12, pp. 1–28.

By: D. McClements*, R. Barrangou, C. Hill*, J. Kokini*, M. Lila, A. Meyer*, L. Yu*

author keywords: future foods; food production; food processing; environmental impacts; nanotechnology; gene editing; genetic engineering; artificial intelligence; robotics
Sources: Web Of Science, ORCID
Added: May 24, 2021

2021 journal article

CRISPRclassify: Repeat-Based Classification of CRISPR Loci

CRISPR JOURNAL, 4(4), 558–574.

By: M. Nethery, M. Korvink*, K. Makarova*, Y. Wolf*, E. V. Koonin & R. Barrangou

Sources: Web Of Science, ORCID
Added: September 7, 2021

2021 journal article

Comparative Genomic Analyses and CRISPR-Cas Characterization of Cutibacterium acnes Provide Insights Into Genetic Diversity and Typing Applications

FRONTIERS IN MICROBIOLOGY, 12.

By: N. Cobian, A. Garlet, C. Hidalgo-Cantabrana & R. Barrangou

author keywords: CRISPR; genomics; Cas; genotyping; phylogeny
Sources: Web Of Science, ORCID
Added: November 29, 2021

2021 journal article

In Vivo Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression

MBIO, 12(1).

By: Y. Goh, R. Barrangou & T. Klaenhammer

Ed(s): G. Huffnagle

author keywords: Lactobacillus; acidophilus; gut adaptation; in vivo gene expression; mouse colonization; probiotic
Sources: ORCID, Web Of Science
Added: January 26, 2021

2021 journal article

Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(6).

author keywords: Lactobacillus; Acidophilus; gasseri; bile salt hydrolase; bile acid
Sources: ORCID, Web Of Science
Added: February 2, 2021

2021 journal article

Portable CRISPR-Cas9(N) System for Flexible Genome Engineering in Lactobacillus acidophilus, Lactobacillus gasseri, and Lactobacillus paracasei

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 87(6).

By: Y. Goh & R. Barrangou

Ed(s): E. Dudley

author keywords: Lactobacillus acidophilus; CRISPR; Cas9; nickase; genome editing; probiotic; lactic acid bacteria; Lactobacillus
Sources: ORCID, Web Of Science
Added: February 26, 2021

2021 article

Species- and site-specific genome editing in complex bacterial communities

Rubin, B. E., Diamond, S., Cress, B. F., Crits-Christoph, A., Lou, Y. C., Borges, A. L., … Doudna, J. A. (2021, December 6). NATURE MICROBIOLOGY, Vol. 12.

By: B. Rubin*, S. Diamond*, B. Cress*, A. Crits-Christoph*, Y. Lou*, A. Borges*, H. Shivram*, C. He* ...

Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 article

Todd R. Klaenhammer, an inspirational food microbiologist who leaves a lasting legacy

Barrangou, R., & Hill, C. (2021, June 1). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.

By: R. Barrangou & C. Hill*

Sources: ORCID, Web Of Science
Added: May 20, 2021

2021 article

Toward inclusive global governance of human genome editing

Yu, H., Xue, L., Barrangou, R., Chen, S., & Huang, Y. (2021, November 23). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.

By: H. Yu*, L. Xue*, R. Barrangou, S. Chen* & Y. Huang*

Sources: ORCID, Web Of Science
Added: November 18, 2021

2021 journal article

Whole-genome sequencing analysis and CRISPR genotyping of rare antibiotic-resistant Salmonella enterica serovars isolated from food and related sources

FOOD MICROBIOLOGY, 93.

By: D. Monte n, M. Nethery, R. Barrangou, M. Landgraf* & P. Fedorka-Cray n

author keywords: Antibiotic resistance; CRISPR; Phylogeny; Salmonella serovars; Whole genome sequencing
Sources: Web Of Science, ORCID
Added: October 5, 2020

2020 journal article

Adaptive response to iterative passages of five Lactobacillus species in simulated vaginal fluid

BMC Microbiology, 20(1).

By: K. Brandt n & R. Barrangou

author keywords: Lactobacillus; Vaginal; Passages; Probiotics
Source: ORCID
Added: November 10, 2020

2020 journal article

Applications of CRISPR-Cas systems in lactic acid bacteria

FEMS Microbiology Reviews, 44(5), 523–537.

By: A. Roberts n & R. Barrangou

author keywords: Lactic acid bacteria; CRISPR; Cas; genome editing; probiotics; genomics
Source: ORCID
Added: May 21, 2020

2020 article

CRISPR Shields: Fending Off Diverse Cas Nucleases with Nucleus-like Structures

Barrangou, R., & Sontheimer, E. J. (2020, March 5). MOLECULAR CELL, Vol. 77, pp. 934–936.

By: R. Barrangou & E. Sontheimer*

Sources: Web Of Science, ORCID
Added: April 6, 2020

2020 journal article

Characterization and applications of Type I CRISPR-Cas systems

Biochemical Society Transactions, 48(1), 15–23.

By: C. Hidalgo-Cantabrana n & R. Barrangou

Source: ORCID
Added: January 11, 2020

2020 review

Combining omics technologies with CRISPR-based genome editing to study food microbes

[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 61, 198–208.

By: M. Pan n & R. Barrangou

Sources: Web Of Science, ORCID
Added: May 8, 2020

2020 journal article

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts

FRONTIERS IN MICROBIOLOGY, 10.

By: M. Pan n, C. Hidalgo-Cantabrana n, Y. Goh, R. Sanozky-Dawes & R. Barrangou

author keywords: probiotics; niche-specific adaptation; Lactobacillus; women's health; in vitro vaginal fluid model
Sources: Web Of Science, ORCID
Added: February 17, 2020

2020 journal article

Complete Genome Sequence of Lactobacillus johnsonii NCK2677, Isolated from Mice

Microbiology Resource Announcements, 9(43).

By: S. O'Flaherty n, M. Foley n, A. Rivera n, C. Theriot n & R. Barrangou

Ed(s): D. Rasko

Source: ORCID
Added: October 22, 2020

2020 journal article

Comprehensive Mining and Characterization of CRISPR-Cas Systems in Bifidobacterium

Microorganisms, 8(5), 720.

By: M. Pan n, M. Nethery n, C. Hidalgo-Cantabrana n & R. Barrangou

author keywords: Bifidobacterium; CRISPR-Cas; genomics
Source: ORCID
Added: May 29, 2020

2020 journal article

Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface

FRONTIERS IN MICROBIOLOGY, 11.

By: C. Klotz, Y. Goh, S. O'Flaherty, B. Johnson & R. Barrangou

author keywords: Lactobacillus; probiotic; S-layer; cell surface; S-layer associated protein; Ig-like domain
Sources: Web Of Science, ORCID
Added: April 27, 2020

2020 review

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

[Review of ]. NATURE REVIEWS MICROBIOLOGY, 18(2), 67–83.

By: K. Makarova*, Y. Wolf*, J. Iranzo*, S. Shmakov*, O. Alkhnbashi*, S. Brouns*, E. Charpentier*, D. Cheng* ...

Sources: Web Of Science, ORCID
Added: February 27, 2020

2020 journal article

Genomic characterization of Lactobacillus fermentum DSM 20052

BMC Genomics, 21(1).

By: K. Brandt n, M. Nethery n, O. Sarah n & R. Barrangou

author keywords: Lactobacillus; Fermentum; Comparative genomics; CRISPR
Source: ORCID
Added: April 30, 2020

2020 journal article

Host and body site-specific adaptation of Lactobacillus crispatus genomes

NAR Genomics and Bioinformatics, 2(1).

By: M. Pan n, C. Hidalgo-Cantabrana n & R. Barrangou

Source: ORCID
Added: January 24, 2020

2020 journal article

In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials

MBio, 11(2).

By: K. Selle*, J. Fletcher n, H. Tuson*, D. Schmitt*, L. McMillan*, G. Vridhambal*, A. Rivera n, S. Montgomery* ...

Ed(s): J. Ballard

Source: ORCID
Added: March 10, 2020

2020 journal article

Reactions to the National Academies/Royal Society Report on Heritable Human Genome Editing

CRISPR JOURNAL, 3(5), 332–349.

By: M. Angrist, R. Barrangou, F. Baylis, C. Brokowski, G. Burgio, A. Caplan, C. Chapman, G. Church ...

Sources: Web Of Science, ORCID
Added: November 24, 2020

2020 journal article

S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM

BMC Microbiology, 20(1).

By: C. Klotz n, Y. Goh n, O. Sarah n & R. Barrangou

author keywords: Lactobacillus; S-layer; Probiotics; Cell surface
Source: ORCID
Added: August 13, 2020

2020 journal article

Sharing the CRISPR Toolbox with an Expanding Community

CRISPR JOURNAL, 3(4), 248–252.

By: C. LaManna*, B. Pyhtila* & R. Barrangou

Sources: Web Of Science, ORCID
Added: September 14, 2020

2020 article

Shutting down RNA-targeting CRISPR

Barrangou, R., & Sontheimer, E. J. (2020, July 3). SCIENCE, Vol. 369, pp. 31–32.

By: R. Barrangou & E. Sontheimer*

Sources: Web Of Science, ORCID
Added: August 3, 2020

2020 journal article

Strain-Dependent Inhibition of Clostridioides difficile by Commensal Clostridia Carrying the Bile Acid-Inducible ( bai ) Operon

Journal of Bacteriology, 202(11).

By: A. Reed n, M. Nethery n, A. Stewart n, R. Barrangou & C. Theriot n

Ed(s): L. Comstock

author keywords: 7 alpha-dehydroxylation; Clostridia; Clostridioides difficile; bile acids; cholate; deoxycholate
Source: ORCID
Added: May 9, 2020

2020 article

Strain-dependent inhibition of Clostridioides difficile by commensal Clostridia encoding the bile acid inducible (bai) operon

Reed, A. D., Nethery, M. A., Stewart, A., Barrangou, R., & Theriot, C. M. (2020, January 23). (Vol. 1). Vol. 1.

By: A. Reed n, M. Nethery n, A. Stewart n, R. Barrangou & C. Theriot n

Source: ORCID
Added: January 24, 2020

2019 article

Applications of CRISPR Technologies Across the Food Supply Chain

ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 10, Vol. 10, pp. 133–150.

By: K. Brandt & R. Barrangou

author keywords: CRISPR-Cas; genome editing; crop development; food supply chain; livestock
Sources: Web Of Science, ORCID
Added: April 22, 2019

2019 journal article

Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract

PLOS PATHOGENS, 15(3).

By: M. Foley, S. O'Flaherty, R. Barrangou & C. Theriot

Ed(s): L. Knoll

Sources: Web Of Science, ORCID
Added: April 15, 2019

2019 journal article

Bringing CRISPR to the Cinema

The CRISPR Journal, 2(4), 187–187.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 journal article

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline

RNA BIOLOGY, 16(4), 577–584.

By: M. Nethery & R. Barrangou

author keywords: CRISPR-Cas; repeat detection; software; CRISPR spacer; crRNA
Sources: Web Of Science, ORCID
Added: May 20, 2019

2019 journal article

CRISPR on the Move in 2019

The CRISPR Journal, 2(1), 1–2.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 review

CRISPR-Directed Microbiome Manipulation across the Food Supply Chain

[Review of ]. TRENDS IN MICROBIOLOGY, 27(6), 489–496.

By: R. Barrangou & R. Notebaart*

Sources: Web Of Science, ORCID
Added: June 4, 2019

2019 review

Characterization and Repurposing of Type I and Type II CRISPR-Cas Systems in Bacteria

[Review of ]. JOURNAL OF MOLECULAR BIOLOGY, 431(1), 21–33.

By: C. Hidalgo-Cantabrana n, Y. Goh & R. Barrangou

author keywords: CRISPR-Cas systems; CRISPR characterization; endogenous systems; genome editing
Sources: Web Of Science, ORCID
Added: February 11, 2019

2019 article

Collaborative networks in gene editing

Huang, Y., Porter, A., Zhang, Y., & Barrangou, R. (2019, October). NATURE BIOTECHNOLOGY, Vol. 37, pp. 1107–1109.

By: Y. Huang*, A. Porter*, Y. Zhang* & R. Barrangou

Sources: Web Of Science, ORCID
Added: November 18, 2019

2019 journal article

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems

RNA BIOLOGY, 16(4), 435–448.

By: G. Faure*, S. Shmakov*, K. Makarova*, Y. Wolf*, A. Crawley, R. Barrangou, E. Koonin

Sources: Web Of Science, ORCID
Added: May 20, 2019

2019 journal article

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage

BMC GENOMICS, 20(1).

By: M. Nethery, E. Henriksen, K. Daughtry n, S. Johanningsmeier & R. Barrangou

author keywords: Lactobacillus buchneri; Comparative genomics; Lactic acid bacteria; CRISPR-Cas systems; Fermentation; Spoilage; Food microbiology
Sources: Web Of Science, ORCID
Added: December 16, 2019

2019 journal article

Foresight is 2020: Ten Bold Predictions for the New CRISPR Year

The CRISPR Journal, 2(6), 341–342.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 journal article

Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus

Proceedings of the National Academy of Sciences.

By: C. Hidalgo-Cantabrana n, Y. Goh n, M. Pan n, R. Sanozky-Dawes n & R. Barrangou

author keywords: CRISPR; Cas3; type I-E; genome editing; probiotic
Source: ORCID
Added: January 2, 2020

2019 review

Harnessing CRISPR-Cas systems for precision engineering of designer probiotic lactobacilli

[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 56, 163–171.

By: Y. Goh & R. Barrangou

Sources: Web Of Science, ORCID
Added: June 17, 2019

2019 journal article

Outcomes and characterization of chromosomal self-targeting by native CRISPR-Cas systems in Streptococcus thermophilus

FEMS MICROBIOLOGY LETTERS, 366(9).

By: C. Canez n, K. Selle, Y. Goh & R. Barrangou

author keywords: CRISPR; lactic acid bacteria; Cas9; Streptococcus; genome editing
Sources: Web Of Science, ORCID
Added: September 3, 2019

2019 journal article

Partnering with bioRxiv

The CRISPR Journal, 2(6), 342–342.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 article

Predicting and visualizing features of CRISPR-Cas systems

CRISPR-CAS ENZYMES, Vol. 616, pp. 1–25.

By: M. Nethery & R. Barrangou

Sources: Web Of Science, ORCID
Added: December 30, 2019

2019 journal article

Profile of Rodolphe Barrangou

Proceedings of the National Academy of Sciences, 116(32), 15754–15756.

By: T. Davis

Source: ORCID
Added: January 3, 2020

2019 journal article

Recombination between phages and CRISPR-cas loci facilitates horizontal gene transfer in staphylococci

NATURE MICROBIOLOGY, 4(6), 956–963.

By: A. Varble*, S. Meaden*, R. Barrangou, E. Westra* & L. Marraffini*

Sources: Web Of Science, ORCID
Added: June 17, 2019

2019 journal article

Short communication: Transcriptional response to a large genomic island deletion in the dairy starter culture Streptococcus thermophilus

JOURNAL OF DAIRY SCIENCE, 102(9), 7800–7806.

By: K. Selle, J. Andersen & R. Barrangou

author keywords: fermentation; Streptococcus thermophilus; transcriptome; CRISPR
Sources: Web Of Science, ORCID
Added: August 26, 2019

2019 journal article

Taking CRISPR to New Heights

The CRISPR Journal, 2(3), 133–133.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 journal article

Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells

NATURE BIOTECHNOLOGY, 37(12), 1493-+.

By: A. Pickar-Oliver*, J. Black*, M. Lewis*, K. Mutchnick*, T. Klann*, K. Gilcrest*, M. Sitton*, C. Nelson* ...

Sources: Web Of Science, ORCID
Added: December 30, 2019

2019 journal article

The repurposing of type I-E CRISPR-Cascade for gene activation in plants

Communications Biology.

By: J. Young*, S. Gasior*, S. Jones*, L. Wang*, P. Navarro*, B. Vickroy*, R. Barrangou

Source: ORCID
Added: January 2, 2020

2019 journal article

Thinking About CRISPR: The Ethics of Human Genome Editing

The CRISPR Journal, 2(5), 247–248.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2019 journal article

Time To Let CRISPR B.E.?

The CRISPR Journal, 2(2), 67–67.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 review

Advances in Industrial Biotechnology Using CRISPR-Cas Systems

[Review of ]. TRENDS IN BIOTECHNOLOGY, 36(2), 134–146.

By: P. Donohoue*, R. Barrangou & A. May*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

CRISPR Craziness: A Response to the EU Court Ruling

The CRISPR Journal, 1(4), 251–252.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

CRISPR Crossroads for Genome Editing

The CRISPR Journal, 1(6), 349–350.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

CRISPRdisco: An Automated Pipeline for the Discovery and Analysis of CRISPR-Cas Systems

CRISPR JOURNAL, 1(2), 171–181.

By: A. Crawley, J. Henriksan & R. Barranaou

Sources: ORCID, Web Of Science
Added: February 25, 2019

2018 journal article

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli

Scientific Reports, 8(1).

By: A. Crawley n, E. Henriksen n, E. Stout n, K. Brandt n & R. Barrangou

Sources: ORCID, Crossref
Added: January 2, 2020

2018 journal article

Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex

FRONTIERS IN MICROBIOLOGY, 9.

By: A. Crawley & R. Barrangou

author keywords: Lactobacillus; core genome; core transcriptome; microbial genetics; chromosome organization
Sources: Web Of Science, ORCID
Added: October 19, 2018

2018 journal article

Cultivating CRISPR

The CRISPR Journal, 1(2), 99–100.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri

MICROBIOLOGY-SGM, 164(9), 1098–1111.

By: E. Stout n, R. Sanozky-Dawes, Y. Goh, A. Crawley, T. Klaenhammer & R. Barrangou

author keywords: Lactobacillus; CRISPR; Cas; Cas9; interference; spacer
Sources: Web Of Science, ORCID
Added: December 31, 2018

2018 journal article

Enabling the Rise of a CRISPR World

The CRISPR Journal, 1(3), 205–208.

By: C. LaManna n & R. Barrangou

Sources: NC State University Libraries, ORCID
Added: February 18, 2019

2018 review

Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications

[Review of ]. FRONTIERS IN MICROBIOLOGY, 9.

By: C. Klotz & R. Barrangou

author keywords: Lactobacillus; probiotic; S-layer; biotherapeutic; mucosal vaccine; CRISPR
Sources: Web Of Science, ORCID
Added: October 16, 2018

2018 journal article

Expanding the CRISPR Landscape on a cas by cas Basis

The CRISPR Journal, 1(5), 303–303.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

Immune loss as a driver of coexistence during host-phage coevolution

ISME JOURNAL, 12(2), 585–597.

By: J. Weissman*, R. Holmes*, R. Barrangou, S. Moineau*, W. Fagan*, B. Levin*, P. Johnson*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 review

Insights into the Human Virome Using CRISPR Spacers from Microbiomes

[Review of ]. VIRUSES-BASEL, 10(9).

By: C. Hidalgo-Cantabrana n, R. Sanozky-Dawes & R. Barrangou

author keywords: CRISPR-Cas systems; CRISPR spacers; virome; phages; microbiome
Sources: Web Of Science, ORCID
Added: November 26, 2018

2018 article

Keep Calm and CRISPR On

Barrangou, R. (2018, February). CRISPR JOURNAL, Vol. 1, pp. 1–3.

By: R. Barrangou

Sources: Web Of Science, ORCID
Added: February 25, 2019

2018 journal article

Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition

PLOS ONE, 13(2).

By: E. Anderson*, S. McClelland*, E. Maksimova*, Z. Strezoska*, M. Basila*, A. Briner n, R. Barrangou, A. Smith*

Ed(s): S. Xu

Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

MasterChef at Work: An Interview with Rodolphe Barrangou

The CRISPR Journal, 1(3), 219–222.

By: K. Davies* & R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 article

Mining for novel bacterial defence systems

Barrangou, R., & Oost, J. (2018, May). NATURE MICROBIOLOGY, Vol. 3, pp. 535–536.

By: R. Barrangou & J. Oost*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 280, 46–56.

By: K. Daughtry n, S. Johanningsmeier, R. Sanozky-Dawes, T. Klaenhammer & R. Barrangou

author keywords: Lactic acid bacteria; Pickled vegetables; Spoilage organisms; Lactobacillus buchneri; Strain diversity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Pomp and Circumstance: Making the Case for CRISPR

The CRISPR Journal, 1(4), 253–254.

By: C. Curchoe* & R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

Pulling the genome in opposite directions to dissect gene networks

Genome Biology, 19.

By: C. Gersbach & R. Barrangou

Source: NC State University Libraries
Added: August 6, 2018

2018 journal article

Pulling the genome in opposite directions to dissect gene networks

Genome Biology, 19(1).

By: C. Gersbach* & R. Barrangou

Sources: ORCID, NC State University Libraries
Added: August 6, 2018

2018 journal article

The Democratization of CRISPR

The CRISPR Journal, 1(3), 203–204.

By: R. Barrangou

Source: ORCID
Added: January 3, 2020

2018 journal article

The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation

MSPHERE, 3(3).

By: S. O'Flaherty, A. Crawley, C. Theriot & R. Barrangou

Ed(s): C. Ellermeier

author keywords: Lactobacillus; bile acid; bile salt hydrolase; gastrointestinal tract; niche; penicillin V acylase; probiotic; therapeutic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Transcriptional and Functional Analysis of Bifidobacterium animalis subsp. lactis Exposure to Tetracycline

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(23).

By: W. Morovic*, P. Roos*, B. Zabel*, C. Hidalgo-Cantabrana n, A. Kiefer* & R. Barrangou

Ed(s): V. Müller

author keywords: Bifidobacterium animalis subsp. lactis; antibiotic resistance; tetracycline; RNA sequencing; genomics; droplet digital PCR; ATP luminescence
Sources: Web Of Science, ORCID
Added: December 3, 2018

2018 journal article

Using glycolysis enzyme sequences to inform Lactobacillus phylogeny

Microbial Genomics, 4(6).

By: K. Brandt n & R. Barrangou

author keywords: Lactobacillus; phylogeny; glycolysis; evolution
Source: ORCID
Added: January 3, 2020

2017 journal article

A decade of discovery: CRISPR functions and applications

NATURE MICROBIOLOGY, 2(7).

By: R. Barrangou & P. Horvath*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 article

CRISPR-Cas Technologies and Applications in Food Bacteria

ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 8, Vol. 8, pp. 413–437.

By: E. Stout n, T. Klaenhammer & R. Barrangou

author keywords: probiotics; cultures; strain-typing; phage resistance; plasmid vaccination; antimicrobial; genome editing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 review

CRISPR-based engineering of next-generation lactic acid bacteria

[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 37, 79–87.

By: C. Hidalgo-Cantabrana n, S. O'Flaherty & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum

FRONTIERS IN MICROBIOLOGY, 8.

By: C. Hidalgo-Cantabrana n, A. Crawley, B. Sanchez* & R. Barrangou

author keywords: CRISPR-Cas systems; genotyping; probiotics; Bifidobacterium longum
Sources: ORCID, Web Of Science
Added: August 6, 2018

2017 journal article

Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus

Frontiers in Microbiology, 8.

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2017 article

Expanding the CRISPR Toolbox: Targeting RNA with Cas13b

Barrangou, R., & Gersbach, C. A. (2017, February 16). MOLECULAR CELL, Vol. 65, pp. 582–584.

By: R. Barrangou & C. Gersbach*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Genome Editing of Food-Grade Lactobacilli To Develop Therapeutic Probiotics

Microbiology Spectrum, 5(5).

By: J. Pijkeren* & R. Barrangou

Source: ORCID
Added: January 3, 2020

2017 journal article

Guest editorial: CRISPRcas9: CRISPR-Cas systems: at the cutting edge of microbiology

Current Opinion in Microbiology, 37, vii-viii.

By: R. Barrangou & D. Bikard*

Sources: ORCID, NC State University Libraries
Added: August 6, 2018

2017 article

Immune Loss as a Driver of Coexistence During Host-Phage Coevolution

Weissman, J. L., Holmes, R., Barrangou, R., Moineau, S., Fagan, W. F., Levin, B., & Johnson, P. L. F. (2017, February 3). (Vol. 2). Vol. 2.

Source: ORCID
Added: January 2, 2020

2017 journal article

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics

FRONTIERS IN MICROBIOLOGY, 8.

By: C. Klotz, S. O'Flaherty, Y. Goh & R. Barrangou

author keywords: Lactobacillus; probiotic; cell surface; S-layer; quantitative proteomics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals

MBIO, 8(6).

By: M. Theilmann*, Y. Goh, K. Nielsen*, T. Klaenhammer, R. Barrangou & M. Abou Hachem*

Ed(s): E. Martens & M. McFall-Ngai

author keywords: Lactobacillus; beta-glucoside; bioavailability; gut microbiota; phytochemical; polydatin; polyphenols; resveratrol; xenobiotic metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Les systèmes CRISPR-Cas comme arme contre les bactéries pathogènes

Biologie Aujourd'Hui, 211(4), 265–270.

By: D. Bikard* & R. Barrangou

Sources: ORCID, Crossref
Added: January 3, 2020

2017 journal article

On the global CRISPR array behavior in class I systems

BIOLOGY DIRECT, 12.

By: A. Toms & R. Barrangou

Sources: ORCID, Web Of Science
Added: August 6, 2018

2017 journal article

QnAs with Rodolphe Barrangou

Proceedings of the National Academy of Sciences, 114(28), 7183–7184.

By: P. Nair

Source: ORCID
Added: January 2, 2020

2017 journal article

Repurposing CRISPR-Cas systems as DNA-based smart antimicrobials

Cell and Gene Therapy Insights, 3(1), 63–72.

By: R. Barrangou & D. Ousterout

Source: ORCID
Added: January 2, 2020

2017 journal article

The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM

FRONTIERS IN MICROBIOLOGY, 8.

By: B. Johnson, S. O'Flaherty, Y. Goh, I. Carroll, R. Barrangou & T. Klaenhammer

author keywords: serine protease; S-layer; S-layer associated proteins; Lactobacillus; probiotic; intestinal barrier integrity; mucin; fibronectin
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 review

Using CRISPR-Cas systems as antimicrobials

[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 37, 155–160.

By: D. Bikard* & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 review

Applications of CRISPR technologies in research and beyond

[Review of ]. NATURE BIOTECHNOLOGY, 34(9), 933–941.

By: R. Barrangou & J. Doudna*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

CRISPR Diversity and Microevolution in Clostridium difficile

GENOME BIOLOGY AND EVOLUTION, 8(9), 2841–2855.

By: J. Andersen, M. Shoup*, C. Robinson*, R. Bitton, K. Olsen* & R. Barrangou

author keywords: CRISPR-Cas; CRISPR phylogeny; CRISPR typing; BI/NAP1/RT027/ST1Type-IB
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

CRISPR-Based Typing and Next-Generation Tracking Technologies

Annual Review of Food Science and Technology, 7(1), 395–411.

By: R. Barrangou & E. Dudley*

author keywords: CRISPR; cas; typing; epidemiology
Source: ORCID
Added: January 2, 2020

2016 review

CRISPR-based typing and next-generation tracking technologies

[Review of ]. Annual review of food science and technology, vol 7, 7, 395–411.

By: R. Barrangou & E. Dudley

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(1), 134–145.

Ed(s): H. Nojiri

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 review

Deciphering and shaping bacterial diversity through CRISPR

[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 31, 101–108.

By: A. Briner n & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 review

Exploiting CRISPR-Cas immune systems for genome editing in bacteria

[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 37, 61–68.

By: R. Barrangou & J. Pijkeren*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(9), 2676–2685.

By: J. Hymes, B. Johnson, R. Barrangou & T. Klaenhammer

Ed(s): E. Dudley

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases

FRONTIERS IN MICROBIOLOGY, 7.

By: W. Morovic*, A. Hibberd*, B. Zabel*, R. Barrangou & B. Stahl*

author keywords: probiotics; labeling; testing and assessment; Lactobacillus; Bifidobacterium; multiplex PCR; taxonomy; high-throughput nucleotide sequencing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Guide RNAs: A Glimpse at the Sequences that Drive CRISPR–Cas Systems

Cold Spring Harbor Protocols, 2016(7), pdb.top090902.

By: A. Briner n & R. Barrangou

Source: ORCID
Added: January 2, 2020

2016 journal article

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems

MOLECULAR CELL, 62(1), 137–147.

By: R. Leenay, K. Maksimchuk n, R. Slotkowski, R. Agrawal, A. Gomaa n, A. Briner n, R. Barrangou, C. Beisel

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Metagenomic reconstructions of bacterial CRISPR loci constrain population histories

ISME JOURNAL, 10(4), 858–870.

By: C. Sun*, B. Thomas*, R. Barrangou & J. Banfield*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences

FRONTIERS IN MICROBIOLOGY, 7.

By: K. Brandt & R. Barrangou

author keywords: Bifidobacterium; glycolysis; phylogeny; probiotic; evolution
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Prediction and Validation of Native and Engineered Cas9 Guide Sequences

Cold Spring Harbor Protocols, 2016(7), pdb.prot086785.

By: A. Briner n, E. Henriksen n & R. Barrangou

Source: ORCID
Added: January 2, 2020

2015 journal article

Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference

NUCLEIC ACIDS RESEARCH, 43(7), 3407–3419.

By: R. Barrangou, A. Birmingham*, S. Wiemann*, R. Beijersbergen*, V. Hornung* & A. Smith*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

An updated evolutionary classification of CRISPR-Cas systems

[Review of ]. Nature Reviews. Microbiology, 13(11), 722–736.

By: K. Makarova, Y. Wolf, O. Alkhnbashi, F. Costa, S. Shah, S. Saunders, R. Barrangou, S. Brouns ...

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

An updated evolutionary classification of CRISPR–Cas systems

Nature Reviews Microbiology, 13(11), 722–736.

By: K. Makarova*, Y. Wolf*, O. Alkhnbashi*, F. Costa*, S. Shah*, S. Saunders*, R. Barrangou, S. Brouns* ...

Sources: ORCID, Crossref
Added: January 2, 2020

2015 article

Bacteriophage exclusion, a new defense system

Barrangou, R., & Oost, J. (2015, January 14). EMBO JOURNAL, Vol. 34, pp. 134–135.

By: R. Barrangou & J. Oost*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus

MBIO, 6(2).

By: D. Paez-Espino*, I. Sharon*, W. Morovic*, B. Stahl*, B. Thomas*, R. Barrangou, J. Banfield*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

CRISPR-Based Technologies and the Future of Food Science

Journal of Food Science, 80(11), R2367–R2372.

By: K. Selle n & R. Barrangou

author keywords: CRISPR; genome; microbiology
Source: ORCID
Added: January 2, 2020

2015 journal article

CRISPR-based screening of genomic island excision events in bacteria

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(26), 8076–8081.

By: K. Selle, T. Klaenhammer & R. Barrangou

author keywords: CRISPR; lactic acid bacteria; transposons; IS-elements; Cas9
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Characterization and evolution of Salmonella CRISPR-Cas systems

MICROBIOLOGY-SGM, 161, 374–386.

By: N. Shariat*, R. Timme*, J. Pettengill*, R. Barrangou & E. Dudley*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

Diversity of CRISPR-Cas immune systems and molecular machines

[Review of ]. Genome Biology, 16.

By: R. Barrangou

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Diversity of CRISPR-Cas immune systems and molecular machines

Genome Biology, 16(1).

By: R. Barrangou

Source: ORCID
Added: January 2, 2020

2015 journal article

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

NATURE COMMUNICATIONS, 6.

By: Z. Sun*, H. Harris*, A. McCann*, C. Guo*, S. Argimon*, W. Zhang*, X. Yang*, I. Jeffery* ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

Harnessing CRISPR-Cas systems for bacterial genome editing

[Review of ]. TRENDS IN MICROBIOLOGY, 23(4), 225–232.

By: K. Selle & R. Barrangou

author keywords: genome editing; CRISPR-Cas; Cas9
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

JFS Special Issue: 75 years of advancing food science, and preparing for the next 75 CRISPR-based technologies and the future of food science

Journal of Food Science, 80(11), R2367–2372.

By: K. Selle & R. Barrangou

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Microbial Ecology of Watery Kimchi

JOURNAL OF FOOD SCIENCE, 80(5), M1031–M1038.

By: K. Kyung*, E. Medina Pradas, S. Kim*, Y. Lee*, K. Kim*, J. Choi*, J. Cho*, C. Chung*, R. Barrangou, F. Breidt n

author keywords: high-throughput sequencing; microbial ecology; watery kimchi
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium

PLOS ONE, 10(7).

By: A. Briner n, G. Lugli*, C. Milani*, S. Duranti*, F. Turroni*, M. Gueimonde*, A. Margolles*, D. Sinderen*, M. Ventura*, R. Barrangou

Ed(s): C. Riedel

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Occurrence and activity of a type II CRISPR-Cas system in Lactobacillus gasseri

MICROBIOLOGY-SGM, 161, 1752–1761.

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

The Bacterial Origins of the CRISPR Genome-Editing Revolution

[Review of ]. HUMAN GENE THERAPY, 26(7), 413–424.

By: E. Sontheimer* & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

The roles of CRISPR-Cas systems in adaptive immunity and beyond

[Review of ]. CURRENT OPINION IN IMMUNOLOGY, 32, 36–41.

By: R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 article

Unraveling the potential of CRISPR-Cas9 for gene therapy

Barrangou, R., & May, A. P. (2015, March). EXPERT OPINION ON BIOLOGICAL THERAPY, Vol. 15, pp. 311–314.

By: R. Barrangou & A. May*

author keywords: Cas9; CRISPR; gene therapy; genome editing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 article

A CRISPR design for next-generation antimicrobials

GENOME BIOLOGY, Vol. 15.

By: C. Beisel, A. Gomaa n & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Association of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Elements with Specific Serotypes and Virulence Potential of Shiga Toxin-Producing Escherichia coli

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(4), 1411–1420.

By: M. Toro*, G. Cao*, W. Ju*, M. Allard*, R. Barrangou, S. Zhao*, E. Brown*, J. Meng*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 review

CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity

[Review of ]. MOLECULAR CELL, 54(2), 234–244.

By: R. Barrangou & L. Marraffini*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 article

Cas9 Targeting and the CRISPR Revolution

Barrangou, R. (2014, May 16). SCIENCE, Vol. 344, pp. 707–708.

By: R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 article

Functions and Applications of RNA-Guided CRISPR-Cas Immune Systems

Barrangou, R., & Horvath, P. (2014, October). Encyclopedia of Molecular Cell Biology and Molecular Medicine.

By: R. Barrangou & P. Horvath*

Source: ORCID
Added: January 2, 2020

2014 journal article

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(20), 6290–6302.

By: C. Milani*, G. Lugli*, S. Duranti*, F. Turroni*, F. Bottacini*, M. Mangifesta*, B. Sanchez*, A. Viappiani* ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Guide RNA Functional Modules Direct Cas9 Activity and Orthogonality

MOLECULAR CELL, 56(2), 333–339.

By: A. Briner n, P. Donohoue*, A. Gomaa n, K. Selle, E. Slorach*, C. Nye*, R. Haurwitz*, C. Beisel, A. May*, R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(3), 994–1001.

By: A. Briner n & R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Microbiology: Bacteria get vaccinated

Nature, 513(7517), 175–176.

By: R. Barrangou & T. Klaenhammer

Sources: ORCID, NC State University Libraries
Added: August 6, 2018

2014 journal article

Programmable Removal of Bacterial Strains by Use of Genome-Targeting CRISPR-Cas Systems

MBIO, 5(1).

By: A. Gomaa n, H. Klumpe n, M. Luo, K. Selle, R. Barrangou & C. Beisel

Sources: ORCID, Web Of Science
Added: August 6, 2018

2014 journal article

Short communication: Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota

Journal of Dairy Science, 97(10), 6370–6377.

By: C. Wehnes*, T. Rehberger, R. Barrangou & A. Smith

author keywords: salmonellosis; cow; clustered regularly interspaced short palindromic repeats (CRISPR)
Source: ORCID
Added: January 2, 2020

2014 journal article

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp enterica

PEERJ, 2.

By: J. Pettengill*, R. Timme*, R. Barrangou, M. Toro*, M. Allard*, E. Strain*, S. Musser*, E. Brown*

author keywords: Salmonella; Horizontal gene transfer; Evolution; CRISPR; Outbreak; Phylogeny; Whole genome sequencing; Typing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus

MOLECULAR MICROBIOLOGY, 93(1), 98–112.

By: J. Carte*, R. Christopher*, J. Smith*, S. Olson*, R. Barrangou, S. Moineau*, C. Glover*, B. Graveley*, R. Terns*, M. Terns*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

A Snapshot into the Metabolism of Isomalto-oligosaccharides in Probiotic Bacteria

Journal of Applied Glycoscience, 60(2), 95–100.

By: M. Hachem*, M. Møller*, J. Andersen*, F. Fredslund*, A. Majumder*, H. Nakai*, L. Leggio*, Y. Goh n ...

Source: ORCID
Added: January 2, 2020

2013 journal article

Antibiotic Resistance in Salmonella enterica Serovar Typhimurium Associates with CRISPR Sequence Type

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 57(9), 4282–4289.

By: M. DiMarzio*, N. Shariat*, S. Kariyawasam*, R. Barrangou & E. Dudley*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Bifidobacterium animalis subsp lactis ATCC 27673 Is a Genomically Unique Strain within Its Conserved Subspecies

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(22), 6903–6910.

By: J. Loquasto*, R. Barrangou, E. Dudley*, B. Stahl*, C. Chen* & R. Roberts*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 book

CRISPR-Cas Systems

Ed(s): R. Barrangou & J. Oost*

Source: ORCID
Added: January 2, 2020

2013 book

CRISPR-Cas Systems

Ed(s): R. Barrangou & J. Oost

Source: ORCID
Added: January 2, 2020

2013 review

CRISPR-Cas systems and RNA-guided interference

[Review of ]. WILEY INTERDISCIPLINARY REVIEWS-RNA, 4(3), 267–278.

By: R. Barrangou

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates

BMC Microbiology, 13(1), 254.

By: N. Shariat*, C. Sandt*, M. DiMarzio*, R. Barrangou & E. Dudley*

author keywords: CRISPR subtyping; CRISPR-MVLST; Molecular subtyping; Salmonella Heidelberg; Salmonella Typhimurium
Source: ORCID
Added: January 2, 2020

2013 journal article

Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14

Genome Announcements, 1(3), e00376–13-e00376–13.

By: B. Stahl* & R. Barrangou

Source: ORCID
Added: January 2, 2020

2013 journal article

Genomic impact of CRISPR immunization against bacteriophages

BIOCHEMICAL SOCIETY TRANSACTIONS, 41(6), 1383–1391.

By: R. Barrangou, A. Coute-Monvoisin*, B. Stahl*, I. Chavichvily*, F. Damange*, D. Romero*, P. Boyaval*, C. Fremaux*, P. Horvath*

author keywords: adaptation; bacteriophage; clustered regularly interspaced short palindromic repeats; (CRISPR)-CRISPR-associated (Cas) system; draft genome; evolution
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus

The EMBO Journal, 32(3), 385–394.

author keywords: DNA interference; DNA-dependent ATPase; nuclease
Source: ORCID
Added: January 2, 2020

2013 journal article

Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp enterica Inferred from Genome-Wide Reference-Free SNP Characters

GENOME BIOLOGY AND EVOLUTION, 5(11), 2109–2123.

By: R. Timme*, J. Pettengill*, M. Allard*, E. Strain*, R. Barrangou, C. Wehnes*, J. Van Kessel*, J. Karns*, S. Musser*, E. Brown*

author keywords: H antigens; serovar; O antigens; CRISPR; lineage-through-time plot; comparative method
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

RNA-guided genome editing à la carte

Cell Research, 23(6), 733–734.

By: P. Horvath* & R. Barrangou

Source: ORCID
Added: January 2, 2020

2013 review

Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria

[Review of ]. BIOCATALYSIS AND BIOTRANSFORMATION, 31(4), 226–235.

By: M. Abou Hachem*, J. Andersen*, R. Barrangou, M. Moller*, F. Fredslund*, A. Majumder*, M. Ejby*, S. Lahtinen* ...

author keywords: Prebiotic; oligosaccharide uptake; ATP-binding cassette transport system; phosphotransferase system; transcriptional analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Strong bias in the bacterial CRISPR elements that confer immunity to phage

Nature Communications, 4, 1430.

By: D. Paez-Espino*, W. Morovic*, C. Sun*, B. Thomas*, K. Ueda*, B. Stahl*, R. Barrangou, J. Banfield*

Source: ORCID
Added: January 2, 2020

2013 journal article

Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results

JOURNAL OF CLINICAL MICROBIOLOGY, 51(7), 2328–2336.

By: N. Shariat*, M. Kirchner*, C. Sandt*, E. Trees*, R. Barrangou & E. Dudley*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

The Evolutionary Divergence of Shiga Toxin-Producing Escherichia coli Is Reflected in Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Spacer Composition

Applied and Environmental Microbiology, 79(18), 5710–5720.

By: S. Yin*, M. Jensen*, J. Bai*, C. DebRoy*, R. Barrangou & E. Dudley*

Source: ORCID
Added: January 2, 2020

2013 journal article

The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity

PLoS Genetics, 9(3), e1003312.

By: B. Levin*, S. Moineau*, M. Bushman* & R. Barrangou

Ed(s): D. Hughes

Source: ORCID
Added: January 2, 2020

2013 journal article

The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis

Food Microbiology, 34(1), 164–173.

By: N. Shariat*, M. DiMarzio*, S. Yin*, L. Dettinger*, C. Sandt*, J. Lute*, R. Barrangou, E. Dudley*

author keywords: Salmonella Enteritidis; CRISPR-MVLST; Molecular subtyping
Source: ORCID
Added: January 2, 2020

2013 journal article

Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04

BMC GENOMICS, 14(1).

By: J. Andersen n, R. Barrangou, M. Abou Hachem*, S. Lahtinen*, Y. Goh, B. Svensson*, T. Klaenhammer

author keywords: Bifidobacterium lactis; Transcriptomics; ABC transporter; GPH transporter; Prebiotics; Glycoside hydrolase
Sources: ORCID, Web Of Science
Added: August 6, 2018

2013 journal article

crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus

RNA BIOLOGY, 10(5), 841–851.

By: T. Karvelis*, G. Gasiunas*, A. Miksys*, R. Barrangou, P. Horvath* & V. Siksnys*

author keywords: CRISPR; DNA silencing; Type II CRISPR-Cas systems
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

BMC Genomics, 13(1), 533.

By: J. Broadbent*, E. Neeno-Eckwall*, B. Stahl*, K. Tandee*, H. Cai, W. Morovic*, P. Horvath*, J. Heidenreich* ...

author keywords: Lactobacillus casei; Lactic acid bacteria; Comparative genomics; Pan-genome; Supragenome; Evolution; Adaptation
Source: ORCID
Added: January 2, 2020

2012 article

Applications of the Versatile CRISPR-Cas Systems

CRISPR-Cas Systems, pp. 267–286.

By: P. Horvath, G. Gasiunas, V. Siksnys & R. Barrangou

Source: ORCID
Added: January 2, 2020

2012 article

Applications of the Versatile CRISPR-Cas Systems

CRISPR-Cas Systems, pp. 267–286.

Source: ORCID
Added: January 2, 2020

2012 journal article

CRISPR: New Horizons in Phage Resistance and Strain Identification

Annual Review of Food Science and Technology, 3(1), 143–162.

By: R. Barrangou & P. Horvath*

author keywords: bacteriophage; cas gene; interference; typing; immunity; starter culture
Source: ORCID
Added: January 2, 2020

2012 journal article

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

Proceedings of the National Academy of Sciences, 109(39), E2579–E2586.

By: G. Gasiunas*, R. Barrangou, P. Horvath* & V. Siksnys*

author keywords: nuclease; site-directed mutagenesis; RNA interference; DNA interference
Source: ORCID
Added: January 2, 2020

2012 journal article

Complete Genome Sequences of Probiotic Strains Bifidobacterium animalis subsp. lactis B420 and Bi-07

Journal of Bacteriology, 194(15), 4131–4132.

By: B. Stahl* & R. Barrangou

Source: ORCID
Added: January 2, 2020

2012 journal article

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity

PLoS Computational Biology, 8(4), e1002475.

By: A. Weinberger*, C. Sun*, M. Pluciński*, V. Denef*, B. Thomas*, P. Horvath*, R. Barrangou, M. Gilmore*, W. Getz*, J. Banfield*

Ed(s): C. Mering

Source: ORCID
Added: January 2, 2020

2012 journal article

Phage mutations in response to CRISPR diversification in a bacterial population

Environmental Microbiology, 15(2), 463–470.

By: C. Sun*, R. Barrangou, B. Thomas*, P. Horvath*, C. Fremaux* & J. Banfield*

Source: ORCID
Added: January 2, 2020

2012 journal article

Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus

PLoS ONE, 7(5), e38077.

By: J. Young*, B. Dill*, C. Pan*, R. Hettich*, J. Banfield*, M. Shah*, C. Fremaux*, P. Horvath*, R. Barrangou, N. VerBerkmoes*

Ed(s): H. Bruggemann

Source: ORCID
Added: January 2, 2020

2012 journal article

RNA-mediated programmable DNA cleavage

Nature Biotechnology, 30(9), 836–838.

By: R. Barrangou

Source: ORCID
Added: January 2, 2020

2012 journal article

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM

PLOS ONE, 7(9).

By: J. Andersen*, R. Barrangou, M. Abou Hachem*, S. Lahtinen*, Y. Goh, B. Svensson*, T. Klaenhammer

Ed(s): C. Gibas

Sources: ORCID, Web Of Science
Added: August 6, 2018

2011 journal article

CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation

Annual Review of Genetics, 45(1), 273–297.

By: D. Bhaya*, M. Davison* & R. Barrangou

author keywords: coevolution; immunity; interference; RNAi; bacteriophage
Source: ORCID
Added: January 2, 2020

2011 journal article

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system

The EMBO Journal, 30(7), 1335–1342.

By: T. Sinkunas*, G. Gasiunas*, C. Fremaux*, R. Barrangou, P. Horvath* & V. Siksnys*

author keywords: Cas3; CRISPR; Ecoli subtype; site-directed mutagenesis; Streptococcus thermophilus
Source: ORCID
Added: January 2, 2020

2011 journal article

Evolution and classification of the CRISPR–Cas systems

Nature Reviews Microbiology, 9(6), 467–477.

By: K. Makarova*, D. Haft*, R. Barrangou, S. Brouns*, E. Charpentier*, P. Horvath*, S. Moineau*, F. Mojica* ...

Source: ORCID
Added: January 2, 2020

2011 article

Genus Lactobacillus

Lactic Acid Bacteria, pp. 77–91.

By: R. Barrangou, S. Lahtinen, F. Ibrahim & A. Ouwehand

Source: ORCID
Added: January 2, 2020

2011 article

Lactic Acid Bacteria Defenses Against Phages

Stress Responses of Lactic Acid Bacteria, pp. 459–478.

By: R. Barrangou & P. Horvath*

Source: ORCID
Added: January 2, 2020

2011 journal article

Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars of Salmonella enterica subsp. enterica

Applied and Environmental Microbiology, 77(6), 1946–1956.

By: F. Liu*, R. Barrangou, P. Gerner-Smidt*, E. Ribot*, S. Knabel* & E. Dudley*

Source: ORCID
Added: January 2, 2020

2011 journal article

Short communication: The complete genome sequence of Bifidobacterium animalis subspecies animalis ATCC 25527T and comparative analysis of growth in milk with B. animalis subspecies lactis DSM 10140T

Journal of Dairy Science, 94(12), 5864–5870.

By: J. Loquasto*, R. Barrangou, E. Dudley* & R. Roberts*

author keywords: Bifidobacterium animalis ssp animalis; genome; growth in milk; clustered regularly interspaced short palindromic repeats (CRISPR)
Source: ORCID
Added: January 2, 2020

2011 journal article

Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)

Applied and Environmental Microbiology, 77(13), 4520–4526.

By: F. Liu*, S. Kariyawasam*, B. Jayarao*, R. Barrangou, P. Gerner-Smidt*, E. Ribot*, S. Knabel*, E. Dudley*

Source: ORCID
Added: January 2, 2020

2011 journal article

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

Nucleic Acids Research, 39(21), 9275–9282.

By: R. Sapranauskas, G. Gasiunas, C. Fremaux, R. Barrangou, P. Horvath & V. Siksnys

Source: ORCID
Added: January 2, 2020

2011 journal article

Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(43), 17785–17790.

By: J. Andersen n, R. Barrangou, M. Abou Hachem*, S. Lahtinen*, Y. Goh, B. Svensson*, T. Klaenhammer

author keywords: lactose permease; catabolite repression element
Sources: ORCID, Web Of Science
Added: August 6, 2018

2010 journal article

Analysis of the human intestinal epithelial cell transcriptional response toLactobacillus acidophilus, Lactobacillus salivarius, Bifidobacterium lactisandEscherichia coli

Beneficial Microbes, 1(3), 283–295.

By: H. Putaala*, R. Barrangou, G. Leyer*, A. Ouwehand*, E. Hansen*, D. Romero*, N. Rautonen*

author keywords: probiotics; Escherichia coli; microarray; cell line models; epithelial cells
Source: ORCID
Added: January 2, 2020

2010 journal article

CRISPR/Cas, the Immune System of Bacteria and Archaea

Science, 327(5962), 167–170.

By: P. Horvath* & R. Barrangou

Source: ORCID
Added: January 2, 2020

2010 journal article

Construction of vectors for inducible and constitutive gene expression in Lactobacillus

Microbial Biotechnology, 4(3), 357–367.

By: T. Duong, M. Miller n, R. Barrangou, M. Azcarate-Peril n & T. Klaenhammer

Sources: ORCID, NC State University Libraries
Added: August 6, 2018

2010 journal article

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

Nature, 468(7320), 67–71.

By: J. Garneau*, M. Dupuis*, M. Villion*, D. Romero*, R. Barrangou, P. Boyaval*, C. Fremaux*, P. Horvath*, A. Magadán*, S. Moineau*

Source: ORCID
Added: January 2, 2020

2009 journal article

Comparative Analyses of Prophage-Like Elements Present in Bifidobacterial Genomes

Applied and Environmental Microbiology, 75(21), 6929–6936.

By: M. Ventura*, F. Turroni*, G. Lima-Mendez*, E. Foroni*, A. Zomer*, S. Duranti*, V. Giubellini*, F. Bottacini* ...

Source: ORCID
Added: January 2, 2020

2009 journal article

Comparative analysis of CRISPR loci in lactic acid bacteria genomes

International Journal of Food Microbiology, 131(1), 62–70.

By: P. Horvath*, A. Coûté-Monvoisin*, D. Romero*, P. Boyaval*, C. Fremaux* & R. Barrangou

author keywords: Clustered regularly interspaced short palindromic repeats (CRISPR); Lactic acid bacteria; Cas gene; Phage; Horizontal gene transfer
Source: ORCID
Added: January 2, 2020

2009 journal article

Comparison of the Complete Genome Sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04

Journal of Bacteriology, 191(13), 4144–4151.

By: R. Barrangou, E. Briczinski*, L. Traeger*, J. Loquasto*, M. Richards*, P. Horvath*, A. Coute-Monvoisin*, G. Leyer* ...

Source: ORCID
Added: January 2, 2020

2009 patent

Compositions comprising promoter sequences and methods of use

By: R. Barrangou, A. Azcarate-Peril, E. Altermann, T. Duong & T. Klaenhammer

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Strain-Specific Genotyping of Bifidobacterium animalis subsp. lactis by Using Single-Nucleotide Polymorphisms, Insertions, and Deletions

Applied and Environmental Microbiology, 75(23), 7501–7508.

By: E. Briczinski*, J. Loquasto*, R. Barrangou, E. Dudley*, A. Roberts* & R. Roberts*

Source: ORCID
Added: January 2, 2020

2009 journal article

The CRISPR System Protects Microbes against Phages, Plasmids

Microbe Magazine, 4(5), 224–230.

By: R. Barrangou & P. Horvath*

Source: ORCID
Added: January 2, 2020

2008 article

Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism

Azcarate-Peril, M. A., Altermann, E., Goh, Y. J., Tallon, R., Sanozky-Dawes, R. B., Pfeiler, E. A., … Klaenhammer, T. R. (2008, August). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 74, pp. 4610–4625.

By: M. Azcarate-Peril n, E. Altermann, Y. Goh, R. Tallon n, R. Sanozky-Dawes n, E. Pfeiler, S. O'Flaherty, B. Buck n ...

Sources: ORCID, Web Of Science
Added: August 6, 2018

2008 article

Functional genomics of probiotic Lactobacilli

Klaenhammer, T. R., Altermann, E., Pfeiler, E., Buck, B. L., Goh, Y.-J., O'Flaherty, S., … Duong, T. (2008, September). JOURNAL OF CLINICAL GASTROENTEROLOGY, Vol. 42, pp. S160–S162.

author keywords: Lactobacillus acidophilus; Lactobacillus johnsonii; Lactobacillus plantarum; Lactobacillus gasseri; genomics; probiotic cultures; lactic acid bacteria
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 patent

Lactobacillus acidophilus nucleic acid sequences encoding carbohydrate utilization-related proteins and uses therefor

By: T. Klaenhammer, E. Altermann, R. Barrangou, W. Russell & T. Duong

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

Science, 315(5819), 1709–1712.

By: R. Barrangou, C. Fremaux*, H. Deveau*, M. Richards*, P. Boyaval*, S. Moineau*, D. Romero*, P. Horvath*

Source: ORCID
Added: January 2, 2020

2007 journal article

Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus

Journal of Bacteriology, 190(4), 1401–1412.

By: P. Horvath*, D. Romero*, A. Coute-Monvoisin*, M. Richards*, H. Deveau*, S. Moineau*, P. Boyaval*, C. Fremaux*, R. Barrangou

Source: ORCID
Added: January 2, 2020

2007 article

Influence of the dairy environment on gene expression and substrate(1-3)

Klaenhammer, T. R., Azcarate-Peril, M. A., Altermann, E., & Barrangou, R. (2007, March). JOURNAL OF NUTRITION, Vol. 137, pp. 748S–750S.

Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus

Journal of Bacteriology, 190(4), 1390–1400.

By: H. Deveau*, R. Barrangou, J. Garneau*, J. Labonte*, C. Fremaux*, P. Boyaval*, D. Romero*, P. Horvath*, S. Moineau*

Source: ORCID
Added: January 2, 2020

2006 journal article

Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(2), 1218–1225.

By: T. Duong, R. Barrangou, W. Russell* & T. Klaenhammer

Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Comparative genomics and transcriptional analysis of prophages identified in the Genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(5), 3130–3146.

By: M. Ventura*, C. Canchaya*, V. Bernini*, E. Altermann, R. Barrangou, S. McGrath*, M. Claesson*, Y. Li* ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Comparative genomics of the lactic acid bacteria

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103(42), 15611–15616.

By: K. Makarova*, A. Slesarev, Y. Wolf*, A. Sorokin*, B. Mirkin*, E. Koonin, A. Pavlov, N. Pavlova ...

author keywords: evolutionary genomics; fermentation
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103(10), 3816–3821.

By: R. Barrangou, M. Azcarate-Peril, T. Duong*, S. Conners, R. Kelly & T. Klaenhammer

author keywords: ATP-binding cassette; carbon catabolite repression; fructooligosaccharide; galactoside-pentose hexuronide
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(11), 3906–3912.

By: E. Altermann, W. Russell, M. Azcarate-Peril n, R. Barrangou, B. Buck n, O. McAuliffe n, N. Souther n, A. Dobson n ...

author keywords: adhesion; stress response; proteolytic system; sugar metabolism; in silico analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Genomic Perspectives on Probiotic Lactic Acid Bacteria

Bioscience and Microflora, 24(2), 31–33.

By: T. Klaenhammer, A. Peril n, R. Barrangou, T. Duong & E. Altermann

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 review

Genomic features of lactic acid bacteria effecting bioprocessing and health

[Review of ]. FEMS MICROBIOLOGY REVIEWS, 29(3), 393–409.

By: T. Klaenhammer, R. Barrangou, B. Buck n, M. Azcarate-Peril & E. Altermann

author keywords: lactic acid bacteria; genomics; bioprocessing; probiotics; comparative genomics; functional genomics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Genomic features of lactic acid bacteria effecting bioprocessing and health

FEMS Microbiology Reviews, 29(3), 393–409.

By: T. Klaenhammer, R. Barrangou, B. Buck, M. Azcarate-Peril & E. Altermann

Source: ORCID
Added: January 2, 2020

2004 patent

Lactobacillus acidophilus nucleic acids encoding fructo-oligosaccharide utilization compounds and uses thereof

Washington, DC: U.S. Patent and Trademark Office.

By: R. Barrangou, T. Klaenhammer & E. Altermann

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 101(8), 2512–2517.

By: R. Pridmore n, B. Berger n, F. Desiere n, D. Vilanova n, C. Barretto n, A. Pittet n, M. Zwahlen n, M. Rouvet n ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Functional and comparative genomic analyses of an operon involved in fructooligosaccharide utilization by Lactobacillus acidophilus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(15), 8957–8962.

By: R. Barrangou, E. Altermann, R. Hutkins*, R. Cano* & T. Klaenhammer

Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Characterization of six Leuconostoc fallax bacteriophages isolated from an industrial sauerkraut fermentation

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(11), 5452–5458.

By: R. Barrangou, S. Yoon, F. Breidt, H. Fleming & T. Klaenhammer

Sources: ORCID, Web Of Science
Added: August 6, 2018

2002 journal article

Identification and characterization of Leuconostoc fallax strains isolated from an industrial sauerkraut fermentation

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(6), 2877–2884.

By: R. Barrangou, S. Yoon, F. Breidt, H. Fleming & T. Klaenhammer

Sources: ORCID, Web Of Science
Added: August 6, 2018

2002 journal article

Isolation and characterization of bacteriophages from fermenting sauerkraut

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(2), 973–976.

By: S. Yoon, R. Barrangou-Poueys n, F. Breidt, T. Klaenhammer & H. Fleming

Sources: ORCID, Web Of Science
Added: August 6, 2018

article

Protection against Foreign DNA

Horvath, P., & Barrangou, R. Bacterial Stress Responses, Second Edition, pp. 333–348.

By: P. Horvath* & R. Barrangou

Source: ORCID
Added: January 2, 2020

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