Rodolphe Barrangou

Advances in lignocellulosic feedstocks for bioenergy and bioproducts

[Review of ]. NATURE COMMUNICATIONS, 16(1).

Managing Expectations for CRISPR in a Volatile World

Barrangou, R. (2025, January 23). CRISPR JOURNAL, Vol. 1.

The curated <i>Lactobacillus acidophilus</i> NCFM genome provides insights into strain specificity and microevolution

BMC GENOMICS, 26(1).

'Tis the Season: CRISPR Products All Around

Barrangou, R. (2024, December 6). CRISPR JOURNAL, Vol. 12.

AI and SynBio Meet CRISPR Heralding a New Genome Editing Era

The CRISPR Journal.

Characterization of <i>Ligilactobacillus salivarius</i> CRISPR-Cas systems

Roberts, A., Spang, D., Sanozky-Dawes, R., Nethery, M. A., & Barrangou, R. (2024, July 11). (C. D. Ellermeier, Ed.). MSPHERE, Vol. 7.

Five Years of Progress in CRISPR Clinical Trials (2019-2024)

CRISPR JOURNAL, 7(5), 227–230.

Surveying the State of CRISPR and Gene Editing

Barrangou, R. (2024, June 1). CRISPR JOURNAL, Vol. 7, pp. 133–134.

Sustainability of animal-sourced foods and plant-based alternatives

Qaim, M., Barrangou, R., & Ronald, P. C. (2024, December 10). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 121.

<i>Lactobacillus acidophilus</i> Expressing Murine Rotavirus VP8 and Mucosal Adjuvants Induce Virus-Specific Immune Responses

VACCINES, 11(12).

Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.

CRISPR Technology and its Many Applications with Select Examples Related to Animal Agriculture

Barrangou, R. (2023, May). JOURNAL OF ANIMAL SCIENCE, Vol. 101.

CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes

Adler, B. A., Trinidad, M. I., Bellieny-Rabelo, D., Zhang, E., Karp, H. M., Skopintsev, P., … Doudna, J. A. (2023, October 27). NUCLEIC ACIDS RESEARCH, Vol. 10.

Genome-Wide Comparative Analysis of Lactiplantibacillus pentosus Isolates Autochthonous to Cucumber Fermentation Reveals Subclades of Divergent Ancestry

FOODS, 12(13).

Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism

MICROORGANISMS, 11(2).

Mining microbial organisms to discover and characterize novel CRISPR-Cas systems

CURRENT OPINION IN BIOMEDICAL ENGINEERING, 27.

Multiplex CRISPR editing of wood for sustainable fiber production

SCIENCE, 381(6654), 216-+.

The Expanding Dissemination and Distribution Patterns of Diverse CRISPR Plasmids by Addgene

Pyhtila, B., Kasowitz, S., Leeson, R., & Barrangou, R. (2023, November 22). CRISPR JOURNAL, Vol. 11.

Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing

Adler, B. A., Hessler, T., Cress, B. F., Lahiri, A., Mutalik, V. K., Barrangou, R., … Doudna, J. A. (2022, October 31). NATURE MICROBIOLOGY, Vol. 10.

CRISPR-based engineering of phages for in situ bacterial base editing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(46).

Clustered Regularly Interspaced Short Palindromic Repeats Genotyping of Multidrug-Resistant Salmonella Heidelberg Strains Isolated From the Poultry Production Chain Across Brazil

FRONTIERS IN MICROBIOLOGY, 13.

Functional characterization of diverse type I-F CRISPR-associated transposons

Roberts, A., Nethery, M. A., & Barrangou, R. (2022, November 17). NUCLEIC ACIDS RESEARCH, Vol. 11.

Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(30).

Metabolomic Analysis of Lactobacillus acidophilus, L. gasseri, L. crispatus, and Lacticaseibacillus rhamnosus Strains in the Presence of Pomegranate Extract

FRONTIERS IN MICROBIOLOGY, 13.

Next-Generation Foods and CRISPR Engineering

Barrangou, R. (2022, August 11).

RNA-targeting CRISPR-Cas13 Provides Broad-spectrum Phage Immunity

Adler, B. A., Hessler, T., Cress, B. F., Mutalik, V. K., Barrangou, R., Banfield, J., & Doudna, J. A. (2022, March 26). (Vol. 3). Vol. 3.

Turning CRISPR on with antibiotics

Barrangou, R., & Marraffini, L. A. (2022, January 12). CELL HOST & MICROBE, Vol. 30, pp. 12–14.

(Broken) Promises of Sustainable Food and Agriculture through New Biotechnologies: The CRISPR Case

CRISPR JOURNAL, 4(1), 25–31.

Building a Resilient, Sustainable, and Healthier Food Supply Through Innovation and Technology

ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 12, 2021, Vol. 12, pp. 1–28.

CRISPRclassify: Repeat-Based Classification of CRISPR Loci

CRISPR JOURNAL, 4(4), 558–574.

Comparative Genomic Analyses and CRISPR-Cas Characterization of Cutibacterium acnes Provide Insights Into Genetic Diversity and Typing Applications

FRONTIERS IN MICROBIOLOGY, 12.

In Vivo Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression

MBIO, 12(1).

Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(6).

Portable CRISPR-Cas9(N) System for Flexible Genome Engineering in Lactobacillus acidophilus, Lactobacillus gasseri, and Lactobacillus paracasei

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 87(6).

Species- and site-specific genome editing in complex bacterial communities

Rubin, B. E., Diamond, S., Cress, B. F., Crits-Christoph, A., Lou, Y. C., Borges, A. L., … Doudna, J. A. (2021, December 6). NATURE MICROBIOLOGY, Vol. 12.

Todd R. Klaenhammer, an inspirational food microbiologist who leaves a lasting legacy

Barrangou, R., & Hill, C. (2021, June 1). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.

Toward inclusive global governance of human genome editing

Yu, H., Xue, L., Barrangou, R., Chen, S., & Huang, Y. (2021, November 23). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.

Whole-genome sequencing analysis and CRISPR genotyping of rare antibiotic-resistant Salmonella enterica serovars isolated from food and related sources

FOOD MICROBIOLOGY, 93.

Adaptive response to iterative passages of five Lactobacillus species in simulated vaginal fluid

BMC Microbiology, 20(1).

Applications of CRISPR-Cas systems in lactic acid bacteria

FEMS Microbiology Reviews, 44(5), 523–537.

CRISPR Shields: Fending Off Diverse Cas Nucleases with Nucleus-like Structures

Barrangou, R., & Sontheimer, E. J. (2020, March 5). MOLECULAR CELL, Vol. 77, pp. 934–936.

Characterization and applications of Type I CRISPR-Cas systems

Biochemical Society Transactions, 48(1), 15–23.

Combining omics technologies with CRISPR-based genome editing to study food microbes

[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 61, 198–208.

Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts

FRONTIERS IN MICROBIOLOGY, 10.

Complete Genome Sequence of Lactobacillus johnsonii NCK2677, Isolated from Mice

Microbiology Resource Announcements, 9(43).

Comprehensive Mining and Characterization of CRISPR-Cas Systems in Bifidobacterium

Microorganisms, 8(5), 720.

Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface

FRONTIERS IN MICROBIOLOGY, 11.

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

[Review of ]. NATURE REVIEWS MICROBIOLOGY, 18(2), 67–83.

Genomic characterization of Lactobacillus fermentum DSM 20052

BMC Genomics, 21(1).

Host and body site-specific adaptation of Lactobacillus crispatus genomes

NAR Genomics and Bioinformatics, 2(1).

In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials

MBio, 11(2).

Reactions to the National Academies/Royal Society Report on Heritable Human Genome Editing

CRISPR JOURNAL, 3(5), 332–349.

S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM

BMC Microbiology, 20(1).

Sharing the CRISPR Toolbox with an Expanding Community

CRISPR JOURNAL, 3(4), 248–252.

Shutting down RNA-targeting CRISPR

Barrangou, R., & Sontheimer, E. J. (2020, July 3). SCIENCE, Vol. 369, pp. 31–32.

Strain-Dependent Inhibition of Clostridioides difficile by Commensal Clostridia Carrying the Bile Acid-Inducible ( bai ) Operon

Journal of Bacteriology, 202(11).

Strain-dependent inhibition ofClostridioides difficileby commensalClostridiaencoding the bile acid inducible(bai)operon

Reed, A. D., Nethery, M. A., Stewart, A., Barrangou, R., & Theriot, C. M. (2020, January 23).

Applications of CRISPR Technologies Across the Food Supply Chain

ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 10, Vol. 10, pp. 133–150.

Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract

PLOS PATHOGENS, 15(3).

Bringing CRISPR to the Cinema

The CRISPR Journal, 2(4), 187–187.

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline

RNA BIOLOGY, 16(4), 577–584.

CRISPR on the Move in 2019

The CRISPR Journal, 2(1), 1–2.

CRISPR-Directed Microbiome Manipulation across the Food Supply Chain

[Review of ]. TRENDS IN MICROBIOLOGY, 27(6), 489–496.

Characterization and Repurposing of Type I and Type II CRISPR-Cas Systems in Bacteria

[Review of ]. JOURNAL OF MOLECULAR BIOLOGY, 431(1), 21–33.

Collaborative networks in gene editing

Huang, Y., Porter, A., Zhang, Y., & Barrangou, R. (2019, October). NATURE BIOTECHNOLOGY, Vol. 37, pp. 1107–1109.

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems

RNA BIOLOGY, 16(4), 435–448.

Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage

BMC GENOMICS, 20(1).

Foresight is 2020: Ten Bold Predictions for the New CRISPR Year

The CRISPR Journal, 2(6), 341–342.

Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus

Proceedings of the National Academy of Sciences.

Harnessing CRISPR-Cas systems for precision engineering of designer probiotic lactobacilli

[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 56, 163–171.

Outcomes and characterization of chromosomal self-targeting by native CRISPR-Cas systems in Streptococcus thermophilus

FEMS MICROBIOLOGY LETTERS, 366(9).

Partnering with bioRxiv

The CRISPR Journal, 2(6), 342–342.

Predicting and visualizing features of CRISPR-Cas systems

CRISPR-CAS ENZYMES, Vol. 616, pp. 1–25.

Profile of Rodolphe Barrangou

Proceedings of the National Academy of Sciences, 116(32), 15754–15756.

Recombination between phages and CRISPR-cas loci facilitates horizontal gene transfer in staphylococci

NATURE MICROBIOLOGY, 4(6), 956–963.

Short communication: Transcriptional response to a large genomic island deletion in the dairy starter culture Streptococcus thermophilus

JOURNAL OF DAIRY SCIENCE, 102(9), 7800–7806.

Taking CRISPR to New Heights

The CRISPR Journal, 2(3), 133–133.

Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells

NATURE BIOTECHNOLOGY, 37(12), 1493-+.

The repurposing of type I-E CRISPR-Cascade for gene activation in plants

Communications Biology.

Thinking About CRISPR: The Ethics of Human Genome Editing

The CRISPR Journal, 2(5), 247–248.

Time To Let CRISPR B.E.?

The CRISPR Journal, 2(2), 67–67.

CRISPR Craziness: A Response to the EU Court Ruling

The CRISPR Journal, 1(4), 251–252.

CRISPR Crossroads for Genome Editing

The CRISPR Journal, 1(6), 349–350.

CRISPRdisco: An Automated Pipeline for the Discovery and Analysis of CRISPR-Cas Systems

CRISPR JOURNAL, 1(2), 171–181.

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli

Scientific Reports, 8(1).

Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex

FRONTIERS IN MICROBIOLOGY, 9.

Cultivating CRISPR

The CRISPR Journal, 1(2), 99–100.

Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri

MICROBIOLOGY-SGM, 164(9), 1098–1111.

Enabling the Rise of a CRISPR World

The CRISPR Journal, 1(3), 205–208.

Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications

[Review of ]. FRONTIERS IN MICROBIOLOGY, 9.

Expanding the CRISPR Landscape on a cas by cas Basis

The CRISPR Journal, 1(5), 303–303.

Immune loss as a driver of coexistence during host-phage coevolution

ISME JOURNAL, 12(2), 585–597.