Works (228)
Updated: August 15th, 2023 21:15
2023 article
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut
Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.
MeSH headings : Animals; Mice; Humans; Clostridioides difficile; Clostridioides; Bile Acids and Salts; Amidohydrolases; Clostridium Infections
www.nature.com (publisher PDF)
Sources: Web Of Science, ORCID
Added: April 4, 2023
2023 journal article
Genome-Wide Comparative Analysis of Lactiplantibacillus pentosus Isolates Autochthonous to Cucumber Fermentation Reveals Subclades of Divergent Ancestry
FOODS, 12(13).
author keywords: Lactiplantibacillus pentosus; comparative genomics; Lactiplantibacillus plantarum; cucumber fermentation; starter culture
Sources: ORCID, Web Of Science
Added: June 23, 2023
2023 journal article
Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism
MICROORGANISMS, 11(2).
author keywords: probiotic; prebiotic; pomegranate; lactobacilli; transcriptomic
Sources: ORCID, Web Of Science
Added: February 7, 2023
2023 journal article
Mining microbial organisms to discover and characterize novel CRISPR-Cas systems
CURRENT OPINION IN BIOMEDICAL ENGINEERING, 27.
author keywords: Novel CRISPR-Cas; Discovery; Genome editing; Mining microbes; Mining metagenomes
Sources: ORCID, Web Of Science
Added: May 18, 2023
2022 article
Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing
Adler, B. A., Hessler, T., Cress, B. F., Lahiri, A., Mutalik, V. K., Barrangou, R., … Doudna, J. A. (2022, October 31). NATURE MICROBIOLOGY, Vol. 10.
MeSH headings : Gene Editing; Bacteriophages / genetics; CRISPR-Cas Systems; Escherichia coli / genetics; Phylogeny; RNA / genetics; Antiviral Agents
Sources: ORCID, Web Of Science
Added: November 1, 2022
2022 journal article
CRISPR-based engineering of phages for in situ bacterial base editing
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(46).
author keywords: phage engineering; CRISPR; base editing; soil microbiome
MeSH headings : Gene Editing; CRISPR-Cas Systems / genetics; Bacteriophages / genetics; Ecosystem; Soil
Sources: ORCID, Web Of Science
Added: November 8, 2022
2022 journal article
Clustered Regularly Interspaced Short Palindromic Repeats Genotyping of Multidrug-Resistant Salmonella Heidelberg Strains Isolated From the Poultry Production Chain Across Brazil
FRONTIERS IN MICROBIOLOGY, 13.
author keywords: antibiotic resistance; CRISPR; phylogeny; Salmonella Heidelberg; foodborne disease; WGS
Sources: Web Of Science, ORCID
Added: July 11, 2022
2022 article
Functional characterization of diverse type I-F CRISPR-associated transposons
Roberts, A., Nethery, M. A., & Barrangou, R. (2022, November 17). NUCLEIC ACIDS RESEARCH, Vol. 11.
MeSH headings : CRISPR-Cas Systems; Plasmids; Endonucleases / metabolism; Escherichia coli / genetics; Escherichia coli / metabolism; DNA; RNA; CRISPR-Associated Proteins / genetics; CRISPR-Associated Proteins / metabolism
Sources: ORCID, Web Of Science
Added: October 19, 2022
2022 journal article
Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(30).
author keywords: CRISPR-Cas; bifidobacterium; genomics; epigenomics; probiotics
MeSH headings : Bifidobacterium / genetics; CRISPR-Cas Systems; Gene Editing / methods; Genome, Bacterial / genetics; Genomics; Humans; Probiotics
Sources: ORCID, Web Of Science
Added: July 21, 2022
2022 journal article
Metabolomic Analysis of Lactobacillus acidophilus, L. gasseri, L. crispatus, and Lacticaseibacillus rhamnosus Strains in the Presence of Pomegranate Extract
FRONTIERS IN MICROBIOLOGY, 13.
author keywords: metabolomics; Lactobacillus; probiotic; pomegranate extract; prebiotic
Sources: Web Of Science, ORCID
Added: June 13, 2022
2022 article
Next-Generation Foods and CRISPR Engineering
Barrangou, R. (2022, August 11).
Source: ORCID
Added: August 17, 2022
2022 article
RNA-targeting CRISPR-Cas13 Provides Broad-spectrum Phage Immunity
Adler, B. A., Hessler, T., Cress, B. F., Mutalik, V. K., Barrangou, R., Banfield, J., & Doudna, J. A. (2022, March 26). (Vol. 3). Vol. 3.
Source: ORCID
Added: March 31, 2022
2022 article
Turning CRISPR on with antibiotics
Barrangou, R., & Marraffini, L. A. (2022, January 12). CELL HOST & MICROBE, Vol. 30, pp. 12–14.
MeSH headings : Anti-Bacterial Agents / pharmacology; Bacteria / genetics; Base Sequence; CRISPR-Cas Systems; Viruses
Sources: Web Of Science, ORCID
Added: February 14, 2022
2021 journal article
(Broken) Promises of Sustainable Food and Agriculture through New Biotechnologies: The CRISPR Case
CRISPR JOURNAL, 4(1), 25–31.
MeSH headings : Agriculture; Animals; Biotechnology; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Crops, Agricultural / genetics; Food; Food Supply; Gene Editing; Livestock / genetics
Sources: Web Of Science, ORCID
Added: March 22, 2021
2021 article
Building a Resilient, Sustainable, and Healthier Food Supply Through Innovation and Technology
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 12, 2021, Vol. 12, pp. 1–28.
author keywords: future foods; food production; food processing; environmental impacts; nanotechnology; gene editing; genetic engineering; artificial intelligence; robotics
MeSH headings : Agriculture; Artificial Intelligence; Biotechnology; COVID-19; Food Quality; Food Safety; Food Supply / standards; Humans; Nanotechnology; Pandemics; Robotics
Sources: Web Of Science, ORCID
Added: May 24, 2021
2021 journal article
CRISPRclassify: Repeat-Based Classification of CRISPR Loci
CRISPR JOURNAL, 4(4), 558–574.
MeSH headings : Algorithms; Area Under Curve; Base Sequence; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Computational Biology / methods; Databases, Genetic; Gene Editing; Genetic Loci; Genome, Bacterial; Genomics / methods; Reproducibility of Results
Sources: Web Of Science, ORCID
Added: September 7, 2021
2021 journal article
Comparative Genomic Analyses and CRISPR-Cas Characterization of Cutibacterium acnes Provide Insights Into Genetic Diversity and Typing Applications
FRONTIERS IN MICROBIOLOGY, 12.
author keywords: CRISPR; genomics; Cas; genotyping; phylogeny
Sources: Web Of Science, ORCID
Added: November 29, 2021
2021 journal article
In Vivo Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression
MBIO, 12(1).
Ed(s): G. Huffnagle
author keywords: Lactobacillus; acidophilus; gut adaptation; in vivo gene expression; mouse colonization; probiotic
MeSH headings : Animals; Bacterial Adhesion; Bacterial Proteins / genetics; Gene Expression Profiling; Host Microbial Interactions / genetics; Immunity; Intestines / microbiology; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / physiology; Mice; Probiotics / administration & dosage; Sequence Analysis, RNA; Signal Transduction; Transcriptome
Sources: ORCID, Web Of Science
Added: January 26, 2021
2021 journal article
Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(6).
author keywords: Lactobacillus; Acidophilus; gasseri; bile salt hydrolase; bile acid
MeSH headings : Amidohydrolases / genetics; Amidohydrolases / metabolism; Ecosystem; Gastrointestinal Microbiome / genetics; Gastrointestinal Microbiome / physiology; Genetic Fitness / genetics; Host-Pathogen Interactions / genetics; Humans; Lactobacillus / enzymology; Lactobacillus / genetics; Probiotics / pharmacology; Substrate Specificity / genetics
Sources: ORCID, Web Of Science
Added: February 2, 2021
2021 journal article
Portable CRISPR-Cas9(N) System for Flexible Genome Engineering in Lactobacillus acidophilus, Lactobacillus gasseri, and Lactobacillus paracasei
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 87(6).
Ed(s): E. Dudley
author keywords: Lactobacillus acidophilus; CRISPR; Cas9; nickase; genome editing; probiotic; lactic acid bacteria; Lactobacillus
MeSH headings : CRISPR-Associated Protein 9; CRISPR-Cas Systems; Deoxyribonuclease I; Gene Editing / methods; Genome, Bacterial; Lactobacillus acidophilus / genetics; Lactobacillus gasseri / genetics; Lacticaseibacillus paracasei / genetics
Sources: ORCID, Web Of Science
Added: February 26, 2021
2021 article
Species- and site-specific genome editing in complex bacterial communities
Rubin, B. E., Diamond, S., Cress, B. F., Crits-Christoph, A., Lou, Y. C., Borges, A. L., … Doudna, J. A. (2021, December 6). NATURE MICROBIOLOGY, Vol. 12.
MeSH headings : Archaea / genetics; Bacteria / classification; CRISPR-Cas Systems; Gastrointestinal Microbiome / genetics; Gene Editing / methods; Genome, Bacterial; Humans; Infant; Microbial Consortia / genetics; RNA, Guide, Kinetoplastida; Soil Microbiology
Sources: Web Of Science, ORCID
Added: December 13, 2021
2021 article
Todd R. Klaenhammer, an inspirational food microbiologist who leaves a lasting legacy
Barrangou, R., & Hill, C. (2021, June 1). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.
MeSH headings : Food Microbiology / history; History, 20th Century; History, 21st Century; Humans; Lactobacillales; National Academy of Sciences, U.S.; Probiotics / history; United States
Sources: ORCID, Web Of Science
Added: May 20, 2021
2021 article
Toward inclusive global governance of human genome editing
Yu, H., Xue, L., Barrangou, R., Chen, S., & Huang, Y. (2021, November 23). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 118.
MeSH headings : Bioethics; Biomedical Research / ethics; CRISPR-Cas Systems; Clinical Governance / ethics; Clinical Governance / standards; Gene Editing / ethics; Genome, Human; Government; Humans; Publications
Sources: ORCID, Web Of Science
Added: November 18, 2021
2021 journal article
Whole-genome sequencing analysis and CRISPR genotyping of rare antibiotic-resistant Salmonella enterica serovars isolated from food and related sources
FOOD MICROBIOLOGY, 93.
author keywords: Antibiotic resistance; CRISPR; Phylogeny; Salmonella serovars; Whole genome sequencing
MeSH headings : Anti-Bacterial Agents / pharmacology; Brazil; Clustered Regularly Interspaced Short Palindromic Repeats; Drug Resistance, Multiple, Bacterial / genetics; Food Microbiology; Genome, Bacterial; Genotype; Genotyping Techniques; Microbial Sensitivity Tests; Salmonella / classification; Salmonella / genetics; Salmonella / isolation & purification; Salmonella Food Poisoning; Salmonella enterica / classification; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Serogroup; Serotyping; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: October 5, 2020
2020 journal article
Adaptive response to iterative passages of five Lactobacillus species in simulated vaginal fluid
BMC Microbiology, 20(1).
author keywords: Lactobacillus; Vaginal; Passages; Probiotics
MeSH headings : Adaptation, Physiological / genetics; Body Fluids / chemistry; Body Fluids / microbiology; Female; Genome, Bacterial; Genomic Instability; Humans; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / growth & development; Lactobacillus / physiology; Species Specificity; Transcriptome; Vagina / chemistry; Vagina / microbiology
Source: ORCID
Added: November 10, 2020
2020 journal article
Applications of CRISPR-Cas systems in lactic acid bacteria
FEMS Microbiology Reviews, 44(5), 523–537.
author keywords: Lactic acid bacteria; CRISPR; Cas; genome editing; probiotics; genomics
MeSH headings : CRISPR-Cas Systems; Industrial Microbiology / trends; Lactobacillales / genetics; Microbiota / genetics
Source: ORCID
Added: May 21, 2020
2020 article
CRISPR Shields: Fending Off Diverse Cas Nucleases with Nucleus-like Structures
Barrangou, R., & Sontheimer, E. J. (2020, March 5). MOLECULAR CELL, Vol. 77, pp. 934–936.
MeSH headings : Bacteriophages / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; DNA; RNA
Sources: Web Of Science, ORCID
Added: April 6, 2020
2020 journal article
Characterization and applications of Type I CRISPR-Cas systems
Biochemical Society Transactions, 48(1), 15–23.
MeSH headings : Adaptive Immunity; Animals; Bacteria / genetics; CRISPR-Associated Proteins / genetics; CRISPR-Cas Systems / genetics; CRISPR-Cas Systems / immunology; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Gene Editing / methods; Genome, Bacterial; Genome, Human; Humans; Plasmids / genetics
Source: ORCID
Added: January 11, 2020
2020 review
Combining omics technologies with CRISPR-based genome editing to study food microbes
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 61, 198–208.
MeSH headings : Bacteria / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Editing; Probiotics
Sources: Web Of Science, ORCID
Added: May 8, 2020
2020 journal article
Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts
FRONTIERS IN MICROBIOLOGY, 10.
author keywords: probiotics; niche-specific adaptation; Lactobacillus; women's health; in vitro vaginal fluid model
Sources: Web Of Science, ORCID
Added: February 17, 2020
2020 journal article
Complete Genome Sequence of Lactobacillus johnsonii NCK2677, Isolated from Mice
Microbiology Resource Announcements, 9(43).
Ed(s): D. Rasko
Source: ORCID
Added: October 22, 2020
2020 journal article
Comprehensive Mining and Characterization of CRISPR-Cas Systems in Bifidobacterium
Microorganisms, 8(5), 720.
author keywords: Bifidobacterium; CRISPR-Cas; genomics
Source: ORCID
Added: May 29, 2020
2020 journal article
Deletion of S-Layer Associated Ig-Like Domain Protein Disrupts the Lactobacillus acidophilus Cell Surface
FRONTIERS IN MICROBIOLOGY, 11.
author keywords: Lactobacillus; probiotic; S-layer; cell surface; S-layer associated protein; Ig-like domain
Sources: Web Of Science, ORCID
Added: April 27, 2020
2020 review
Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants
[Review of ]. NATURE REVIEWS MICROBIOLOGY, 18(2), 67–83.
MeSH headings : Archaea / genetics; Bacteria / genetics; CRISPR-Cas Systems / genetics; CRISPR-Cas Systems / physiology; Evolution, Molecular; Gene Expression Regulation, Archaeal / physiology; Gene Expression Regulation, Bacterial / physiology
Sources: Web Of Science, ORCID
Added: February 27, 2020
2020 journal article
Genomic characterization of Lactobacillus fermentum DSM 20052
BMC Genomics, 21(1).
author keywords: Lactobacillus; Fermentum; Comparative genomics; CRISPR
MeSH headings : CRISPR-Cas Systems / genetics; Genetic Variation; Genome, Bacterial; Genomic Islands; Genomics; Interspersed Repetitive Sequences; Limosilactobacillus fermentum / classification; Limosilactobacillus fermentum / genetics; Phylogeny
Source: ORCID
Added: April 30, 2020
2020 journal article
Host and body site-specific adaptation of Lactobacillus crispatus genomes
NAR Genomics and Bioinformatics, 2(1).
Source: ORCID
Added: January 24, 2020
2020 journal article
In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials
MBio, 11(2).
Ed(s): J. Ballard
MeSH headings : Animals; Bacteriophages / genetics; CRISPR-Associated Proteins / genetics; CRISPR-Cas Systems / genetics; Clostridioides difficile / genetics; Enterocolitis, Pseudomembranous / microbiology; Enterocolitis, Pseudomembranous / therapy; Female; Genetic Engineering; Male; Mice; Mice, Inbred C57BL
Source: ORCID
Added: March 10, 2020
2020 journal article
Reactions to the National Academies/Royal Society Report on Heritable Human Genome Editing
CRISPR JOURNAL, 3(5), 332–349.
MeSH headings : Academies and Institutes; Gene Editing / ethics; Genome, Human; Germ Cells; Human Experimentation / ethics; Humans; Research Report; Societies
Sources: Web Of Science, ORCID
Added: November 24, 2020
2020 journal article
S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM
BMC Microbiology, 20(1).
author keywords: Lactobacillus; S-layer; Probiotics; Cell surface
MeSH headings : Bacterial Adhesion; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / immunology; Base Sequence; Caco-2 Cells; Catalytic Domain; Computer Simulation; Epithelial Cells / cytology; Epithelial Cells / immunology; Gene Deletion; Humans; Lactobacillus acidophilus / immunology; Lactobacillus acidophilus / physiology; Phenotype; Probiotics
Source: ORCID
Added: August 13, 2020
2020 journal article
Sharing the CRISPR Toolbox with an Expanding Community
CRISPR JOURNAL, 3(4), 248–252.
MeSH headings : CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Editing / statistics & numerical data; Gene Editing / trends
Sources: Web Of Science, ORCID
Added: September 14, 2020
2020 article
Shutting down RNA-targeting CRISPR
Barrangou, R., & Sontheimer, E. J. (2020, July 3). SCIENCE, Vol. 369, pp. 31–32.
MeSH headings : Bacteriophages; CRISPR-Associated Proteins / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; RNA
Sources: Web Of Science, ORCID
Added: August 3, 2020
2020 journal article
Strain-Dependent Inhibition of Clostridioides difficile by Commensal Clostridia Carrying the Bile Acid-Inducible ( bai ) Operon
Journal of Bacteriology, 202(11).
Ed(s): L. Comstock
author keywords: 7 alpha-dehydroxylation; Clostridia; Clostridioides difficile; bile acids; cholate; deoxycholate
MeSH headings : Antibiosis; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Bile Acids and Salts / metabolism; Clostridiales / genetics; Clostridiales / physiology; Clostridioides difficile / growth & development; Clostridioides difficile / physiology; Clostridium Infections / metabolism; Clostridium Infections / microbiology; Clostridium histolyticum / genetics; Clostridium histolyticum / physiology; Humans; Operon; Species Specificity; Symbiosis
Source: ORCID
Added: May 9, 2020
2020 article
Strain-dependent inhibition of Clostridioides difficile by commensal Clostridia encoding the bile acid inducible (bai) operon
Reed, A. D., Nethery, M. A., Stewart, A., Barrangou, R., & Theriot, C. M. (2020, January 23). (Vol. 1). Vol. 1.
Source: ORCID
Added: January 24, 2020
2019 article
Applications of CRISPR Technologies Across the Food Supply Chain
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 10, Vol. 10, pp. 133–150.
author keywords: CRISPR-Cas; genome editing; crop development; food supply chain; livestock
MeSH headings : Animals; Clustered Regularly Interspaced Short Palindromic Repeats; Crops, Agricultural / genetics; Food Supply; Gene Editing; Livestock
Sources: Web Of Science, ORCID
Added: April 22, 2019
2019 journal article
Bile salt hydrolases: Gatekeepers of bile acid metabolism and host-microbiome crosstalk in the gastrointestinal tract
PLOS PATHOGENS, 15(3).
Ed(s): L. Knoll
MeSH headings : Amidohydrolases / metabolism; Amidohydrolases / physiology; Bile Acids and Salts / metabolism; Gastrointestinal Microbiome / physiology; Gastrointestinal Tract; Host Microbial Interactions / physiology; Humans
Sources: Web Of Science, ORCID
Added: April 15, 2019
2019 journal article
Bringing CRISPR to the Cinema
The CRISPR Journal, 2(4), 187–187.
MeSH headings : CRISPR-Associated Proteins; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Editing; Motion Pictures
Source: ORCID
Added: January 3, 2020
2019 journal article
CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline
RNA BIOLOGY, 16(4), 577–584.
author keywords: CRISPR-Cas; repeat detection; software; CRISPR spacer; crRNA
MeSH headings : Bacteria / genetics; Base Sequence; CRISPR-Cas Systems / genetics; Computational Biology; Genetic Loci; High-Throughput Nucleotide Sequencing / methods; Time Factors
Sources: Web Of Science, ORCID
Added: May 20, 2019
2019 journal article
CRISPR on the Move in 2019
The CRISPR Journal, 2(1), 1–2.
MeSH headings : CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Humans; Research / trends
Source: ORCID
Added: January 3, 2020
2019 review
CRISPR-Directed Microbiome Manipulation across the Food Supply Chain
[Review of ]. TRENDS IN MICROBIOLOGY, 27(6), 489–496.
MeSH headings : CRISPR-Cas Systems; Fermentation; Food Chain; Food Microbiology; Food Supply; Gene Editing; Metabolic Engineering; Microbiota
Sources: Web Of Science, ORCID
Added: June 4, 2019
2019 review
Characterization and Repurposing of Type I and Type II CRISPR-Cas Systems in Bacteria
[Review of ]. JOURNAL OF MOLECULAR BIOLOGY, 431(1), 21–33.
author keywords: CRISPR-Cas systems; CRISPR characterization; endogenous systems; genome editing
Sources: Web Of Science, ORCID
Added: February 11, 2019
2019 article
Collaborative networks in gene editing
Huang, Y., Porter, A., Zhang, Y., & Barrangou, R. (2019, October). NATURE BIOTECHNOLOGY, Vol. 37, pp. 1107–1109.
MeSH headings : Biomedical Research / trends; Gene Editing; Humans; International Cooperation; Leadership; Publishing / trends
Sources: Web Of Science, ORCID
Added: November 18, 2019
2019 journal article
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems
RNA BIOLOGY, 16(4), 435–448.
MeSH headings : Bacteroides / genetics; Base Sequence; CRISPR-Cas Systems / genetics; Conserved Sequence / genetics; Evolution, Molecular; Genomics; Nucleic Acid Conformation; RNA, Bacterial / genetics; RNA, Guide, Kinetoplastida / genetics; Repetitive Sequences, Nucleic Acid / genetics; Streptococcus / genetics; Thermodynamics; Trans-Activators / genetics
Sources: Web Of Science, ORCID
Added: May 20, 2019
2019 journal article
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage
BMC GENOMICS, 20(1).
author keywords: Lactobacillus buchneri; Comparative genomics; Lactic acid bacteria; CRISPR-Cas systems; Fermentation; Spoilage; Food microbiology
MeSH headings : Computational Biology / methods; Evolution, Molecular; Fermentation; Food Microbiology; Genome, Bacterial; Genomics / methods; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Molecular Sequence Annotation; Phylogeny; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: December 16, 2019
2019 journal article
Foresight is 2020: Ten Bold Predictions for the New CRISPR Year
The CRISPR Journal, 2(6), 341–342.
MeSH headings : CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Gene Editing / ethics; Gene Editing / methods; Humans
Source: ORCID
Added: January 3, 2020
2019 journal article
Genome editing using the endogenous type I CRISPR-Cas system in Lactobacillus crispatus
Proceedings of the National Academy of Sciences.
author keywords: CRISPR; Cas3; type I-E; genome editing; probiotic
MeSH headings : Base Sequence; CRISPR-Cas Systems / genetics; Gene Editing; Genetic Loci; Genetic Variation; Lactobacillus crispatus / genetics; Lactobacillus crispatus / ultrastructure; Nucleotide Motifs / genetics; RNA, Guide, Kinetoplastida / genetics
Source: ORCID
Added: January 2, 2020
2019 review
Harnessing CRISPR-Cas systems for precision engineering of designer probiotic lactobacilli
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 56, 163–171.
MeSH headings : CRISPR-Cas Systems / genetics; Drug Delivery Systems; Gene Editing; Genetic Engineering / methods; Lactobacillus / genetics; Probiotics / metabolism
Sources: Web Of Science, ORCID
Added: June 17, 2019
2019 journal article
Outcomes and characterization of chromosomal self-targeting by native CRISPR-Cas systems in Streptococcus thermophilus
FEMS MICROBIOLOGY LETTERS, 366(9).
author keywords: CRISPR; lactic acid bacteria; Cas9; Streptococcus; genome editing
MeSH headings : Bacteriophages / genetics; CRISPR-Cas Systems; Chromosomes, Bacterial / genetics; Gene Editing; Genome, Bacterial; Homologous Recombination; Plasmids / genetics; Streptococcus thermophilus / genetics; Streptococcus thermophilus / virology
Sources: Web Of Science, ORCID
Added: September 3, 2019
2019 journal article
Partnering with bioRxiv
The CRISPR Journal, 2(6), 342–342.
Source: ORCID
Added: January 3, 2020
2019 article
Predicting and visualizing features of CRISPR-Cas systems
CRISPR-CAS ENZYMES, Vol. 616, pp. 1–25.
MeSH headings : Animals; Bacteria / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Computer Simulation; Gene Editing / methods; Genomics / methods; Humans; RNA, Guide, Kinetoplastida / genetics; Software
Sources: Web Of Science, ORCID
Added: December 30, 2019
2019 journal article
Profile of Rodolphe Barrangou
Proceedings of the National Academy of Sciences, 116(32), 15754–15756.
MeSH headings : CRISPR-Cas Systems / genetics; Food Technology / history; History, 20th Century; History, 21st Century
Source: ORCID
Added: January 3, 2020
2019 journal article
Recombination between phages and CRISPR-cas loci facilitates horizontal gene transfer in staphylococci
NATURE MICROBIOLOGY, 4(6), 956–963.
MeSH headings : Bacteria / genetics; Bacteriophages / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / immunology; Endonucleases; Gene Transfer, Horizontal; Genome, Bacterial; Genome, Viral; Plasmids / genetics; Pseudomonas aeruginosa / genetics; Sequence Analysis, DNA; Staphylococcus / genetics; Staphylococcus aureus / genetics; Transduction, Genetic
Sources: Web Of Science, ORCID
Added: June 17, 2019
2019 journal article
Short communication: Transcriptional response to a large genomic island deletion in the dairy starter culture Streptococcus thermophilus
JOURNAL OF DAIRY SCIENCE, 102(9), 7800–7806.
author keywords: fermentation; Streptococcus thermophilus; transcriptome; CRISPR
MeSH headings : Animals; Clustered Regularly Interspaced Short Palindromic Repeats; Fermentation; Gene Deletion; Gene Expression Regulation, Bacterial / physiology; Genomic Islands; Genomics; Lactic Acid / metabolism; Lactobacillus delbrueckii / metabolism; Milk / microbiology; Streptococcus thermophilus / genetics; Streptococcus thermophilus / metabolism; Transcriptome; Yogurt / microbiology
Sources: Web Of Science, ORCID
Added: August 26, 2019
2019 journal article
Taking CRISPR to New Heights
The CRISPR Journal, 2(3), 133–133.
MeSH headings : CRISPR-Associated Proteins; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Editing
Source: ORCID
Added: January 3, 2020
2019 journal article
Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells
NATURE BIOTECHNOLOGY, 37(12), 1493-+.
MeSH headings : CRISPR-Cas Systems / genetics; Escherichia coli / genetics; Genetic Engineering / methods; HEK293 Cells; Humans; Listeria monocytogenes / genetics; RNA, Guide, Kinetoplastida / genetics; Transcription, Genetic / genetics
Sources: Web Of Science, ORCID
Added: December 30, 2019
2019 journal article
The repurposing of type I-E CRISPR-Cascade for gene activation in plants
Communications Biology.
MeSH headings : Biolistics; CRISPR-Cas Systems; Chromosomes, Plant / genetics; DNA, Plant / genetics; Genes, Plant; Genetic Engineering / methods; Plasmids / genetics; Streptococcus thermophilus / genetics; Transcriptional Activation; Zea mays / embryology; Zea mays / genetics
Source: ORCID
Added: January 2, 2020
2019 journal article
Thinking About CRISPR: The Ethics of Human Genome Editing
The CRISPR Journal, 2(5), 247–248.
MeSH headings : CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Gene Editing / ethics; Genome, Human / genetics; Humans
Source: ORCID
Added: January 3, 2020
2019 journal article
Time To Let CRISPR B.E.?
The CRISPR Journal, 2(2), 67–67.
MeSH headings : Animals; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Genetic Engineering / methods; Humans; Nucleotides / genetics; Research / trends
Source: ORCID
Added: January 3, 2020
2018 review
Advances in Industrial Biotechnology Using CRISPR-Cas Systems
[Review of ]. TRENDS IN BIOTECHNOLOGY, 36(2), 134–146.
MeSH headings : Animals; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Biotechnology / methods; CRISPR-Associated Protein 9; CRISPR-Cas Systems; Endonucleases / genetics; Endonucleases / metabolism; Gene Editing / methods; Genetic Engineering / methods; Industrial Microbiology / methods; Metabolic Networks and Pathways / genetics; Plants / genetics; RNA, Guide, Kinetoplastida / genetics; RNA, Guide, Kinetoplastida / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
CRISPR Craziness: A Response to the EU Court Ruling
The CRISPR Journal, 1(4), 251–252.
Source: ORCID
Added: January 3, 2020
2018 journal article
CRISPR Crossroads for Genome Editing
The CRISPR Journal, 1(6), 349–350.
Source: ORCID
Added: January 3, 2020
2018 journal article
CRISPRdisco: An Automated Pipeline for the Discovery and Analysis of CRISPR-Cas Systems
CRISPR JOURNAL, 1(2), 171–181.
Sources: ORCID, Web Of Science
Added: February 25, 2019
2018 journal article
Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli
Scientific Reports, 8(1).
MeSH headings : Bacteriophages / genetics; CRISPR-Cas Systems; Gene Expression Profiling; Genetic Variation; Genome, Bacterial; Lactobacillus / enzymology; Lactobacillus / genetics; Plasmids; RNA, Guide, Kinetoplastida / genetics; Recombination, Genetic
Sources: ORCID, Crossref
Added: January 2, 2020
2018 journal article
Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex
FRONTIERS IN MICROBIOLOGY, 9.
author keywords: Lactobacillus; core genome; core transcriptome; microbial genetics; chromosome organization
Sources: Web Of Science, ORCID
Added: October 19, 2018
2018 journal article
Cultivating CRISPR
The CRISPR Journal, 1(2), 99–100.
Source: ORCID
Added: January 3, 2020
2018 journal article
Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri
MICROBIOLOGY-SGM, 164(9), 1098–1111.
author keywords: Lactobacillus; CRISPR; Cas; Cas9; interference; spacer
MeSH headings : CRISPR-Associated Protein 9 / metabolism; Clustered Regularly Interspaced Short Palindromic Repeats; Interspersed Repetitive Sequences; Lactobacillus gasseri / genetics; Mutation; Plasmids; Recombination, Genetic; Sequence Deletion; Transformation, Bacterial
Sources: Web Of Science, ORCID
Added: December 31, 2018
2018 journal article
Enabling the Rise of a CRISPR World
The CRISPR Journal, 1(3), 205–208.
Sources: NC State University Libraries, ORCID
Added: February 18, 2019
2018 review
Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications
[Review of ]. FRONTIERS IN MICROBIOLOGY, 9.
author keywords: Lactobacillus; probiotic; S-layer; biotherapeutic; mucosal vaccine; CRISPR
Sources: Web Of Science, ORCID
Added: October 16, 2018
2018 journal article
Expanding the CRISPR Landscape on a cas by cas Basis
The CRISPR Journal, 1(5), 303–303.
Source: ORCID
Added: January 3, 2020
2018 journal article
Immune loss as a driver of coexistence during host-phage coevolution
ISME JOURNAL, 12(2), 585–597.
MeSH headings : Bacteria / genetics; Bacteria / immunology; Bacteriophages / physiology; Biological Evolution; CRISPR-Cas Systems; Models, Immunological
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 review
Insights into the Human Virome Using CRISPR Spacers from Microbiomes
[Review of ]. VIRUSES-BASEL, 10(9).
author keywords: CRISPR-Cas systems; CRISPR spacers; virome; phages; microbiome
MeSH headings : Biodiversity; Clustered Regularly Interspaced Short Palindromic Repeats; Humans; Metagenomics; Microbiota; Viruses / classification; Viruses / genetics; Viruses / isolation & purification
Sources: Web Of Science, ORCID
Added: November 26, 2018
2018 article
Keep Calm and CRISPR On
Barrangou, R. (2018, February). CRISPR JOURNAL, Vol. 1, pp. 1–3.
Sources: Web Of Science, ORCID
Added: February 25, 2019
2018 journal article
Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition
PLOS ONE, 13(2).
Ed(s): S. Xu
MeSH headings : CRISPR-Cas Systems; Lactobacillus gasseri / genetics; RNA Editing
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
MasterChef at Work: An Interview with Rodolphe Barrangou
The CRISPR Journal, 1(3), 219–222.
Source: ORCID
Added: January 3, 2020
2018 article
Mining for novel bacterial defence systems
Barrangou, R., & Oost, J. (2018, May). NATURE MICROBIOLOGY, Vol. 3, pp. 535–536.
MeSH headings : Bacteria; Genome, Bacterial
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 280, 46–56.
author keywords: Lactic acid bacteria; Pickled vegetables; Spoilage organisms; Lactobacillus buchneri; Strain diversity
MeSH headings : Acetic Acid / metabolism; Bioreactors; Cucumis sativus / microbiology; Fermentation; Genotype; Lactic Acid / metabolism; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Lactobacillus / metabolism; Propylene Glycol / metabolism; RNA, Ribosomal, 16S / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
Pomp and Circumstance: Making the Case for CRISPR
The CRISPR Journal, 1(4), 253–254.
Source: ORCID
Added: January 3, 2020
2018 journal article
Pulling the genome in opposite directions to dissect gene networks
Genome Biology, 19(1).
MeSH headings : CRISPR-Associated Protein 9; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Regulatory Networks; Genome
Sources: ORCID, NC State University Libraries
Added: August 6, 2018
2018 journal article
Pulling the genome in opposite directions to dissect gene networks
Genome Biology, 19.
Source: NC State University Libraries
Added: August 6, 2018
2018 journal article
The Democratization of CRISPR
The CRISPR Journal, 1(3), 203–204.
Source: ORCID
Added: January 3, 2020
2018 journal article
The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation
MSPHERE, 3(3).
Ed(s): C. Ellermeier
author keywords: Lactobacillus; bile acid; bile salt hydrolase; gastrointestinal tract; niche; penicillin V acylase; probiotic; therapeutic
MeSH headings : Adaptation, Biological; Amidohydrolases / genetics; Genetic Variation; Genotype; Lactobacillus / classification; Lactobacillus / enzymology; Lactobacillus / genetics; Penicillin Amidase / genetics; Phylogeny; Sequence Homology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
Transcriptional and Functional Analysis of Bifidobacterium animalis subsp. lactis Exposure to Tetracycline
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(23).
Ed(s): V. Müller
author keywords: Bifidobacterium animalis subsp. lactis; antibiotic resistance; tetracycline; RNA sequencing; genomics; droplet digital PCR; ATP luminescence
MeSH headings : Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Bifidobacterium animalis / drug effects; Bifidobacterium animalis / genetics; Bifidobacterium animalis / metabolism; Clustered Regularly Interspaced Short Palindromic Repeats / drug effects; Gene Expression Regulation, Bacterial / drug effects; Genome, Bacterial / drug effects; Tetracycline / pharmacology; Tetracycline Resistance; Transcription, Genetic / drug effects
Sources: Web Of Science, ORCID
Added: December 3, 2018
2018 journal article
Using glycolysis enzyme sequences to inform Lactobacillus phylogeny
Microbial Genomics, 4(6).
author keywords: Lactobacillus; phylogeny; glycolysis; evolution
MeSH headings : Base Composition; Evolution, Molecular; Gene Expression Regulation, Bacterial; Genetic Drift; Genome Size; Genome, Bacterial; Glycolysis / genetics; Glycolysis / physiology; Lactobacillus / classification; Lactobacillus / enzymology; Lactobacillus / genetics; Lactobacillus / metabolism; Probiotics; RNA, Ribosomal, 16S / genetics; Sequence Alignment; Species Specificity
Source: ORCID
Added: January 3, 2020
2017 journal article
A decade of discovery: CRISPR functions and applications
NATURE MICROBIOLOGY, 2(7).
MeSH headings : Archaea / enzymology; Archaea / genetics; Bacteria / enzymology; Bacteria / genetics; CRISPR-Cas Systems; Gene Editing / history; Gene Editing / methods; History, 21st Century; Molecular Biology / history; Molecular Biology / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 article
CRISPR-Cas Technologies and Applications in Food Bacteria
ANNUAL REVIEW OF FOOD SCIENCE AND TECHNOLOGY, VOL 8, Vol. 8, pp. 413–437.
author keywords: probiotics; cultures; strain-typing; phage resistance; plasmid vaccination; antimicrobial; genome editing
MeSH headings : Bacteria / genetics; Bacteria / immunology; Bacterial Vaccines; Bacteriophages / genetics; CRISPR-Cas Systems; Food Industry; Food Microbiology; Gene Editing; Genes, Bacterial; Interspersed Repetitive Sequences; Probiotics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 review
CRISPR-based engineering of next-generation lactic acid bacteria
[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 37, 79–87.
MeSH headings : Bifidobacterium / genetics; Bifidobacterium / physiology; CRISPR-Cas Systems; Food Microbiology / methods; Gene Editing; Humans; Lactobacillus / genetics; Lactobacillus / physiology; Metabolic Engineering; Probiotics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum
FRONTIERS IN MICROBIOLOGY, 8.
author keywords: CRISPR-Cas systems; genotyping; probiotics; Bifidobacterium longum
Sources: ORCID, Web Of Science
Added: August 6, 2018
2017 journal article
Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus
Frontiers in Microbiology, 8.
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2017 article
Expanding the CRISPR Toolbox: Targeting RNA with Cas13b
Barrangou, R., & Gersbach, C. A. (2017, February 16). MOLECULAR CELL, Vol. 65, pp. 582–584.
MeSH headings : CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Humans; RNA; RNA, Guide, Kinetoplastida / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Genome Editing of Food-Grade Lactobacilli To Develop Therapeutic Probiotics
Microbiology Spectrum, 5(5).
MeSH headings : Animals; Bacterial Infections / drug therapy; Gene Editing; Genome, Bacterial; Humans; Lactobacillus / genetics; Lactobacillus / physiology; Probiotics / chemistry; Probiotics / therapeutic use
Source: ORCID
Added: January 3, 2020
2017 journal article
Guest editorial: CRISPRcas9: CRISPR-Cas systems: at the cutting edge of microbiology
Current Opinion in Microbiology, 37, vii-viii.
MeSH headings : Bacteria / genetics; Bacteria / immunology; Biotechnology / trends; CRISPR-Associated Proteins / metabolism; CRISPR-Cas Systems / genetics; CRISPR-Cas Systems / immunology; Gene Editing; Microbiology / trends; Quorum Sensing
Sources: ORCID, NC State University Libraries
Added: August 6, 2018
2017 article
Immune Loss as a Driver of Coexistence During Host-Phage Coevolution
Weissman, J. L., Holmes, R., Barrangou, R., Moineau, S., Fagan, W. F., Levin, B., & Johnson, P. L. F. (2017, February 3). (Vol. 2). Vol. 2.
Source: ORCID
Added: January 2, 2020
2017 journal article
Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics
FRONTIERS IN MICROBIOLOGY, 8.
author keywords: Lactobacillus; probiotic; cell surface; S-layer; quantitative proteomics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals
MBIO, 8(6).
Ed(s): E. Martens & M. McFall-Ngai
author keywords: Lactobacillus; beta-glucoside; bioavailability; gut microbiota; phytochemical; polydatin; polyphenols; resveratrol; xenobiotic metabolism
MeSH headings : Biological Availability; Dietary Carbohydrates / metabolism; Gastrointestinal Microbiome / physiology; Glucosides / metabolism; Glucosides / pharmacology; Humans; Hydrolysis; Lactobacillus acidophilus / drug effects; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / growth & development; Lactobacillus acidophilus / metabolism; Phytochemicals / metabolism; Polyphenols / metabolism; Resveratrol; Stilbenes / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Les systèmes CRISPR-Cas comme arme contre les bactéries pathogènes
Biologie Aujourd'Hui, 211(4), 265–270.
MeSH headings : Animals; Anti-Bacterial Agents / metabolism; Bacteria / immunology; Bacteria / pathogenicity; CRISPR-Cas Systems / physiology; Cell Death / genetics; Deoxyribonucleases / genetics; Deoxyribonucleases / metabolism; Disease Resistance / genetics; Humans; Immunity, Innate / genetics
Sources: ORCID, Crossref
Added: January 3, 2020
2017 journal article
On the global CRISPR array behavior in class I systems
BIOLOGY DIRECT, 12.
MeSH headings : CRISPR-Cas Systems / physiology; Chromosomes, Bacterial / chemistry; Datasets as Topic; Genome, Bacterial; Models, Genetic; Poisson Distribution; Software
Sources: ORCID, Web Of Science
Added: August 6, 2018
2017 journal article
QnAs with Rodolphe Barrangou
Proceedings of the National Academy of Sciences, 114(28), 7183–7184.
MeSH headings : Animals; Bacteria / virology; Biotechnology / history; Biotechnology / methods; Biotechnology / trends; CRISPR-Cas Systems; Drug Resistance, Bacterial; Food Contamination; Food Microbiology; Food Technology; Genotype; History, 21st Century; Livestock; Meat; Molecular Biology
Source: ORCID
Added: January 2, 2020
2017 journal article
Repurposing CRISPR-Cas systems as DNA-based smart antimicrobials
Cell and Gene Therapy Insights, 3(1), 63–72.
Source: ORCID
Added: January 2, 2020
2017 journal article
The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM
FRONTIERS IN MICROBIOLOGY, 8.
author keywords: serine protease; S-layer; S-layer associated proteins; Lactobacillus; probiotic; intestinal barrier integrity; mucin; fibronectin
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 review
Using CRISPR-Cas systems as antimicrobials
[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 37, 155–160.
MeSH headings : Anti-Infective Agents / pharmacology; Biological Products / pharmacology; CRISPR-Cas Systems; DNA Cleavage; DNA, Bacterial / metabolism; Genetic Engineering; Microbial Viability / drug effects; Plasmids; Transformation, Bacterial
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 review
Applications of CRISPR technologies in research and beyond
[Review of ]. NATURE BIOTECHNOLOGY, 34(9), 933–941.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
CRISPR Diversity and Microevolution in Clostridium difficile
GENOME BIOLOGY AND EVOLUTION, 8(9), 2841–2855.
author keywords: CRISPR-Cas; CRISPR phylogeny; CRISPR typing; BI/NAP1/RT027/ST1Type-IB
MeSH headings : CRISPR-Cas Systems; Clostridioides difficile / classification; Clostridioides difficile / genetics; Clustered Regularly Interspaced Short Palindromic Repeats; Evolution, Molecular; Phylogeny; Polymorphism, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
CRISPR-Based Typing and Next-Generation Tracking Technologies
Annual Review of Food Science and Technology, 7(1), 395–411.
author keywords: CRISPR; cas; typing; epidemiology
MeSH headings : Bacteria / classification; Bacteria / genetics; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / physiology; Genome, Bacterial / genetics; Genotyping Techniques / methods; Genotyping Techniques / trends; Lactobacillus / classification; Lactobacillus / genetics; Salmonella / classification; Salmonella / genetics; Streptococcus thermophilus / classification; Streptococcus thermophilus / genetics
Source: ORCID
Added: January 2, 2020
2016 review
CRISPR-based typing and next-generation tracking technologies
[Review of ]. Annual review of food science and technology, vol 7, 7, 395–411.
Source: NC State University Libraries
Added: August 6, 2018
2016 journal article
Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(1), 134–145.
Ed(s): H. Nojiri
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Lactobacillus / chemistry; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / metabolism; Lactobacillus acidophilus / chemistry; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / metabolism; Membrane Glycoproteins / chemistry; Membrane Glycoproteins / genetics; Membrane Glycoproteins / metabolism; Molecular Sequence Data; Phylogeny; Proteomics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 review
Deciphering and shaping bacterial diversity through CRISPR
[Review of ]. CURRENT OPINION IN MICROBIOLOGY, 31, 101–108.
MeSH headings : Bacteria / genetics; Bacteria / virology; Bacteriophages / genetics; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Genome, Bacterial / genetics; Host-Pathogen Interactions / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 review
Exploiting CRISPR-Cas immune systems for genome editing in bacteria
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 37, 61–68.
MeSH headings : CRISPR-Cas Systems; DNA Repair; DNA, Bacterial / genetics; Genome, Bacterial; Humans; Immune System; Protein Engineering
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(9), 2676–2685.
Ed(s): E. Dudley
MeSH headings : Bacterial Adhesion / physiology; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Fibronectins / metabolism; Intestines / microbiology; Lactobacillus acidophilus / chemistry; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / metabolism; Membrane Glycoproteins / metabolism; Mutation; Phylogeny; Protein Binding
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases
FRONTIERS IN MICROBIOLOGY, 7.
author keywords: probiotics; labeling; testing and assessment; Lactobacillus; Bifidobacterium; multiplex PCR; taxonomy; high-throughput nucleotide sequencing
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Guide RNAs: A Glimpse at the Sequences that Drive CRISPR–Cas Systems
Cold Spring Harbor Protocols, 2016(7), pdb.top090902.
MeSH headings : CRISPR-Cas Systems; Gene Editing / methods; RNA, Guide, Kinetoplastida / genetics; RNA, Guide, Kinetoplastida / metabolism; Streptococcus pyogenes / enzymology
Source: ORCID
Added: January 2, 2020
2016 journal article
Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems
MOLECULAR CELL, 62(1), 137–147.
MeSH headings : Bacillus / chemistry; Bacillus / metabolism; CRISPR-Associated Proteins / chemistry; CRISPR-Associated Proteins / genetics; CRISPR-Cas Systems; Escherichia coli / chemistry; Escherichia coli / metabolism; Francisella / chemistry; Francisella / metabolism; High-Throughput Screening Assays / methods; Protein Structure, Tertiary; Streptococcus thermophilus / chemistry; Streptococcus thermophilus / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
ISME JOURNAL, 10(4), 858–870.
MeSH headings : Bacteria / classification; Bacteria / genetics; Bacteria / virology; Bacteriophages / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Metagenomics; Plasmids
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences
FRONTIERS IN MICROBIOLOGY, 7.
author keywords: Bifidobacterium; glycolysis; phylogeny; probiotic; evolution
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Prediction and Validation of Native and Engineered Cas9 Guide Sequences
Cold Spring Harbor Protocols, 2016(7), pdb.prot086785.
MeSH headings : Bacterial Proteins / metabolism; CRISPR-Associated Protein 9; Endonucleases / metabolism; Gene Editing / methods; RNA, Guide, Kinetoplastida / genetics; RNA, Guide, Kinetoplastida / metabolism; Streptococcus pyogenes / enzymology
Source: ORCID
Added: January 2, 2020
2015 journal article
Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference
NUCLEIC ACIDS RESEARCH, 43(7), 3407–3419.
MeSH headings : Animals; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Genetic Engineering; Genome; RNA Interference
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 review
An updated evolutionary classification of CRISPR-Cas systems
[Review of ]. Nature Reviews. Microbiology, 13(11), 722–736.
Source: NC State University Libraries
Added: August 6, 2018
2015 journal article
An updated evolutionary classification of CRISPR–Cas systems
Nature Reviews Microbiology, 13(11), 722–736.
MeSH headings : Archaea / genetics; Bacteria / genetics; CRISPR-Cas Systems / genetics; Evolution, Molecular; Genome, Archaeal; Genome, Bacterial; Phylogeny
Sources: ORCID, Crossref
Added: January 2, 2020
2015 article
Bacteriophage exclusion, a new defense system
Barrangou, R., & Oost, J. (2015, January 14). EMBO JOURNAL, Vol. 34, pp. 134–135.
MeSH headings : Bacillus subtilis / virology; Bacteriophages / genetics; Bacteriophages / pathogenicity; DNA Methylation; DNA Modification Methylases / genetics; Genome, Microbial; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
CRISPR Immunity Drives Rapid Phage Genome Evolution in Streptococcus thermophilus
MBIO, 6(2).
MeSH headings : Adaptation, Biological; CRISPR-Cas Systems; Evolution, Molecular; Genome, Viral; Host-Parasite Interactions; Mutation Rate; Polymorphism, Single Nucleotide; Recombination, Genetic; Streptococcus thermophilus / genetics; Streptococcus thermophilus / virology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
CRISPR-Based Technologies and the Future of Food Science
Journal of Food Science, 80(11), R2367–R2372.
author keywords: CRISPR; genome; microbiology
MeSH headings : Bacteria / genetics; Bacteria / virology; Bacteriophages; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Fermentation; Food Technology; Humans; Probiotics
Source: ORCID
Added: January 2, 2020
2015 journal article
CRISPR-based screening of genomic island excision events in bacteria
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(26), 8076–8081.
author keywords: CRISPR; lactic acid bacteria; transposons; IS-elements; Cas9
MeSH headings : Clustered Regularly Interspaced Short Palindromic Repeats; Gene Deletion; Genome, Bacterial; Homeostasis; Homologous Recombination; Streptococcus thermophilus / genetics; Streptococcus thermophilus / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Characterization and evolution of Salmonella CRISPR-Cas systems
MICROBIOLOGY-SGM, 161, 374–386.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Diversity of CRISPR-Cas immune systems and molecular machines
Genome Biology, 16(1).
MeSH headings : Adaptive Immunity / genetics; Animals; Bacteria / genetics; Bacteria / immunology; CRISPR-Cas Systems / genetics; CRISPR-Cas Systems / immunology; DNA / genetics; Genetic Engineering / methods; Genetic Variation / genetics; Genetic Variation / immunology; Humans; RNA Editing / genetics
Source: ORCID
Added: January 2, 2020
2015 review
Diversity of CRISPR-Cas immune systems and molecular machines
[Review of ]. Genome Biology, 16.
Source: NC State University Libraries
Added: August 6, 2018
2015 journal article
Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
NATURE COMMUNICATIONS, 6.
MeSH headings : Biotechnology; Genome, Bacterial; Lactobacillus / enzymology; Lactobacillus / genetics; Leuconostoc / genetics; Pediococcus / genetics; Phylogeny; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 review
Harnessing CRISPR-Cas systems for bacterial genome editing
[Review of ]. TRENDS IN MICROBIOLOGY, 23(4), 225–232.
author keywords: genome editing; CRISPR-Cas; Cas9
MeSH headings : Bacteria / genetics; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats; DNA Repair; Genetic Engineering / methods; Genome, Bacterial; Homeostasis / genetics; Mutation; Phenotype
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
JFS Special Issue: 75 years of advancing food science, and preparing for the next 75 CRISPR-based technologies and the future of food science
Journal of Food Science, 80(11), R2367–2372.
Source: NC State University Libraries
Added: August 6, 2018
2015 journal article
Microbial Ecology of Watery Kimchi
JOURNAL OF FOOD SCIENCE, 80(5), M1031–M1038.
author keywords: high-throughput sequencing; microbial ecology; watery kimchi
MeSH headings : DNA, Bacterial / chemistry; DNA, Bacterial / classification; DNA, Bacterial / isolation & purification; DNA, Ribosomal / chemistry; Enterobacteriaceae / classification; Enterobacteriaceae / genetics; Enterobacteriaceae / isolation & purification; Fermentation; Food Microbiology; Lactobacillus / classification; Proteobacteria / classification; Proteobacteria / genetics; Proteobacteria / isolation & purification; RNA, Ribosomal, 16S / genetics; Raphanus / microbiology; Sequence Analysis, DNA; Temperature; Vegetables / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium
PLOS ONE, 10(7).
Ed(s): C. Riedel
MeSH headings : Bifidobacterium / genetics; CRISPR-Cas Systems / genetics; Chromosomes, Bacterial / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; DNA / genetics; Evolution, Molecular; Genetic Variation / genetics; Genome, Bacterial / genetics; Prophages / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Occurrence and activity of a type II CRISPR-Cas system in Lactobacillus gasseri
MICROBIOLOGY-SGM, 161, 1752–1761.
MeSH headings : Base Sequence; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Order; Genome, Bacterial; Lactobacillus / genetics; Molecular Sequence Data; Plasmids / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 review
The Bacterial Origins of the CRISPR Genome-Editing Revolution
[Review of ]. HUMAN GENE THERAPY, 26(7), 413–424.
MeSH headings : Animals; Archaea / genetics; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Genetic Engineering / economics; Genetic Engineering / trends; Genome, Bacterial; Humans
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 review
The roles of CRISPR-Cas systems in adaptive immunity and beyond
[Review of ]. CURRENT OPINION IN IMMUNOLOGY, 32, 36–41.
MeSH headings : Archaea / immunology; Bacteria / immunology; Bacterial Physiological Phenomena; Biological Evolution; CRISPR-Cas Systems / physiology; Gene Expression Regulation, Bacterial; Genome, Bacterial; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 article
Unraveling the potential of CRISPR-Cas9 for gene therapy
Barrangou, R., & May, A. P. (2015, March). EXPERT OPINION ON BIOLOGICAL THERAPY, Vol. 15, pp. 311–314.
author keywords: Cas9; CRISPR; gene therapy; genome editing
MeSH headings : Animals; CRISPR-Cas Systems / genetics; DNA Repair / genetics; Genetic Therapy / methods; Genetic Therapy / trends; Genome; Humans
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 article
A CRISPR design for next-generation antimicrobials
GENOME BIOLOGY, Vol. 15.
MeSH headings : Animals; Anti-Infective Agents / administration & dosage; CRISPR-Cas Systems; Drug Resistance, Microbial / genetics; Enterohemorrhagic Escherichia coli / genetics; Gene Targeting; RNA, Guide, Kinetoplastida / genetics; Ribonucleases / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Association of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Elements with Specific Serotypes and Virulence Potential of Shiga Toxin-Producing Escherichia coli
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(4), 1411–1420.
MeSH headings : Cluster Analysis; Clustered Regularly Interspaced Short Palindromic Repeats; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Genotype; Molecular Sequence Data; Sequence Analysis, DNA; Serotyping; Shiga-Toxigenic Escherichia coli / classification; Shiga-Toxigenic Escherichia coli / genetics; Shiga-Toxigenic Escherichia coli / pathogenicity; Virulence Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 review
CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity
[Review of ]. MOLECULAR CELL, 54(2), 234–244.
MeSH headings : Adaptive Immunity / genetics; Bacteriophages / immunology; CRISPR-Associated Proteins / immunology; Clustered Regularly Interspaced Short Palindromic Repeats / immunology; DNA, Bacterial / chemistry; Inverted Repeat Sequences; Prokaryotic Cells / immunology; Prokaryotic Cells / virology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 article
Cas9 Targeting and the CRISPR Revolution
Barrangou, R. (2014, May 16). SCIENCE, Vol. 344, pp. 707–708.
MeSH headings : Clustered Regularly Interspaced Short Palindromic Repeats; DNA Cleavage; Gene Targeting / methods; Genetic Engineering / methods; RNA, Guide, Kinetoplastida / genetics; Streptococcus pyogenes / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 article
Functions and Applications of RNA-Guided CRISPR-Cas Immune Systems
Barrangou, R., & Horvath, P. (2014, October). Encyclopedia of Molecular Cell Biology and Molecular Medicine.
Source: ORCID
Added: January 2, 2020
2014 journal article
Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(20), 6290–6302.
MeSH headings : Animals; Bifidobacterium / genetics; Bifidobacterium / metabolism; Bifidobacterium / physiology; Biological Evolution; Clustered Regularly Interspaced Short Palindromic Repeats; Computer Simulation; Gastrointestinal Tract / microbiology; Genome, Bacterial; Molecular Sequence Data; Phylogeny; Sequence Analysis, DNA; Species Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Guide RNA Functional Modules Direct Cas9 Activity and Orthogonality
MOLECULAR CELL, 56(2), 333–339.
MeSH headings : Bacterial Proteins / chemistry; CRISPR-Associated Protein 9; CRISPR-Associated Proteins / chemistry; CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; DNA / chemistry; DNA Cleavage; Endonucleases / chemistry; Genetic Engineering / methods; HEK293 Cells; Humans; Nucleic Acid Conformation; RNA, Guide, Kinetoplastida / chemistry; RNA, Guide, Kinetoplastida / genetics; RNA, Guide, Kinetoplastida / ultrastructure
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(3), 994–1001.
MeSH headings : Clustered Regularly Interspaced Short Palindromic Repeats; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Food Microbiology; Genetic Variation; Genotype; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Molecular Sequence Data; Molecular Typing / methods; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Microbiology: Bacteria get vaccinated
Nature, 513(7517), 175–176.
MeSH headings : Adaptive Immunity / immunology; Bacteriophages / immunology; CRISPR-Cas Systems / immunology; Streptococcus thermophilus / immunology
Sources: ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Programmable Removal of Bacterial Strains by Use of Genome-Targeting CRISPR-Cas Systems
MBIO, 5(1).
MeSH headings : CRISPR-Cas Systems; DNA, Bacterial / genetics; DNA, Bacterial / metabolism; Escherichia coli / genetics; Genome, Bacterial; Hydrolysis; Microbial Viability
Sources: ORCID, Web Of Science
Added: August 6, 2018
2014 journal article
Short communication: Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota
Journal of Dairy Science, 97(10), 6370–6377.
author keywords: salmonellosis; cow; clustered regularly interspaced short palindromic repeats (CRISPR)
MeSH headings : Animals; Base Sequence; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / microbiology; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Dairying; Feces / microbiology; Female; Genetic Variation; Genotype; Humans; Minnesota / epidemiology; Molecular Sequence Data; Salmonella / genetics; Salmonella / isolation & purification; Salmonella Food Poisoning / epidemiology; Salmonella Food Poisoning / microbiology; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Sequence Analysis, DNA; Serogroup; Wisconsin / epidemiology
Source: ORCID
Added: January 2, 2020
2014 journal article
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp enterica
PEERJ, 2.
author keywords: Salmonella; Horizontal gene transfer; Evolution; CRISPR; Outbreak; Phylogeny; Whole genome sequencing; Typing
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus
MOLECULAR MICROBIOLOGY, 93(1), 98–112.
MeSH headings : Bacterial Proteins / metabolism; CRISPR-Cas Systems; Models, Genetic; RNA, Bacterial / metabolism; Sequence Analysis, RNA; Streptococcus thermophilus / genetics; Streptococcus thermophilus / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
A Snapshot into the Metabolism of Isomalto-oligosaccharides in Probiotic Bacteria
Journal of Applied Glycoscience, 60(2), 95–100.
Source: ORCID
Added: January 2, 2020
2013 journal article
Antibiotic Resistance in Salmonella enterica Serovar Typhimurium Associates with CRISPR Sequence Type
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 57(9), 4282–4289.
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Bifidobacterium animalis subsp lactis ATCC 27673 Is a Genomically Unique Strain within Its Conserved Subspecies
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(22), 6903–6910.
MeSH headings : Base Composition; Bifidobacterium / classification; Bifidobacterium / genetics; Bifidobacterium / isolation & purification; Clustered Regularly Interspaced Short Palindromic Repeats; Comparative Genomic Hybridization; DNA, Bacterial / genetics; Genome, Bacterial; Genomic Islands; Molecular Sequence Data; Open Reading Frames; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 book
Source: ORCID
Added: January 2, 2020
2013 book
Source: ORCID
Added: January 2, 2020
2013 review
CRISPR-Cas systems and RNA-guided interference
[Review of ]. WILEY INTERDISCIPLINARY REVIEWS-RNA, 4(3), 267–278.
MeSH headings : Archaea / genetics; Archaea / virology; Bacteria / genetics; Bacteria / virology; Gene Transfer, Horizontal; Interspersed Repetitive Sequences; Plasmids; RNA, Small Interfering / genetics; RNA, Small Interfering / metabolism; RNA, Untranslated / genetics; RNA, Untranslated / metabolism; Recombination, Genetic; Repetitive Sequences, Nucleic Acid; Viruses / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates
BMC Microbiology, 13(1), 254.
author keywords: CRISPR subtyping; CRISPR-MVLST; Molecular subtyping; Salmonella Heidelberg; Salmonella Typhimurium
MeSH headings : DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Disease Outbreaks; Electrophoresis, Gel, Pulsed-Field; Foodborne Diseases / epidemiology; Foodborne Diseases / microbiology; Humans; Molecular Sequence Data; Molecular Typing / methods; Salmonella Infections / epidemiology; Salmonella Infections / microbiology; Salmonella enterica / classification; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Sequence Analysis, DNA; United States
Source: ORCID
Added: January 2, 2020
2013 journal article
Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14
Genome Announcements, 1(3), e00376–13-e00376–13.
Source: ORCID
Added: January 2, 2020
2013 journal article
Genomic impact of CRISPR immunization against bacteriophages
BIOCHEMICAL SOCIETY TRANSACTIONS, 41(6), 1383–1391.
author keywords: adaptation; bacteriophage; clustered regularly interspaced short palindromic repeats; (CRISPR)-CRISPR-associated (Cas) system; draft genome; evolution
MeSH headings : Bacteriophages / immunology; Base Sequence; CRISPR-Cas Systems / genetics; CRISPR-Cas Systems / immunology; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / immunology; Genome, Bacterial / genetics; Molecular Sequence Data; Mutation / genetics; Streptococcus thermophilus / genetics; Streptococcus thermophilus / immunology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus
The EMBO Journal, 32(3), 385–394.
author keywords: DNA interference; DNA-dependent ATPase; nuclease
MeSH headings : Adaptive Immunity / immunology; Adenosine Triphosphate / metabolism; Base Sequence; Chromatography, High Pressure Liquid; Cloning, Molecular; DNA Cleavage; DNA Helicases / metabolism; Denaturing Gradient Gel Electrophoresis; Electrophoretic Mobility Shift Assay; In Vitro Techniques; Mass Spectrometry; Molecular Sequence Data; Plasmids / metabolism; RNA, Bacterial / genetics; RNA, Bacterial / immunology; Repetitive Sequences, Nucleic Acid / genetics; Repetitive Sequences, Nucleic Acid / immunology; Ribonucleoproteins / immunology; Ribonucleoproteins / metabolism; Rosaniline Dyes; Sequence Analysis, DNA; Streptococcus thermophilus / enzymology; Streptococcus thermophilus / immunology; Streptococcus thermophilus / virology
Source: ORCID
Added: January 2, 2020
2013 journal article
Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp enterica Inferred from Genome-Wide Reference-Free SNP Characters
GENOME BIOLOGY AND EVOLUTION, 5(11), 2109–2123.
author keywords: H antigens; serovar; O antigens; CRISPR; lineage-through-time plot; comparative method
MeSH headings : Base Sequence; Clustered Regularly Interspaced Short Palindromic Repeats; Evolution, Molecular; Gene Transfer, Horizontal; Genome, Bacterial; Molecular Sequence Data; O Antigens / genetics; Phylogeny; Polymorphism, Single Nucleotide; Salmonella enterica / classification; Salmonella enterica / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
RNA-guided genome editing à la carte
Cell Research, 23(6), 733–734.
MeSH headings : CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; DNA Restriction Enzymes; Endonucleases; Genetic Engineering; Humans; Plasmids / genetics; RNA / genetics; RNA / metabolism; RNA Editing / genetics; RNA, Guide, Kinetoplastida / genetics; RNA, Small Interfering / genetics; Viruses / genetics
Source: ORCID
Added: January 2, 2020
2013 review
Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria
[Review of ]. BIOCATALYSIS AND BIOTRANSFORMATION, 31(4), 226–235.
author keywords: Prebiotic; oligosaccharide uptake; ATP-binding cassette transport system; phosphotransferase system; transcriptional analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Strong bias in the bacterial CRISPR elements that confer immunity to phage
Nature Communications, 4, 1430.
MeSH headings : Autoimmunity / genetics; Bacteriophages / physiology; Biological Evolution; DNA, Intergenic / genetics; Genetic Loci / genetics; Genome, Viral / genetics; High-Throughput Nucleotide Sequencing; Host-Pathogen Interactions / genetics; Immunity / genetics; Inverted Repeat Sequences / genetics; Open Reading Frames / genetics; Polymorphism, Single Nucleotide / genetics; Streptococcus thermophilus / genetics; Streptococcus thermophilus / immunology; Streptococcus thermophilus / virology
Source: ORCID
Added: January 2, 2020
2013 journal article
Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results
JOURNAL OF CLINICAL MICROBIOLOGY, 51(7), 2328–2336.
MeSH headings : Cluster Analysis; DNA Fingerprinting / methods; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Electrophoresis, Gel, Pulsed-Field / methods; Genotype; Humans; Molecular Epidemiology / methods; Molecular Sequence Data; Multilocus Sequence Typing / methods; Salmonella enterica / classification; Salmonella enterica / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
The Evolutionary Divergence of Shiga Toxin-Producing Escherichia coli Is Reflected in Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Spacer Composition
Applied and Environmental Microbiology, 79(18), 5710–5720.
MeSH headings : Cluster Analysis; Clustered Regularly Interspaced Short Palindromic Repeats; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Evolution, Molecular; False Negative Reactions; False Positive Reactions; Genetic Variation; Molecular Sequence Data; Real-Time Polymerase Chain Reaction / methods; Sensitivity and Specificity; Sequence Analysis, DNA; Shiga-Toxigenic Escherichia coli / classification; Shiga-Toxigenic Escherichia coli / genetics; United States
Source: ORCID
Added: January 2, 2020
2013 journal article
The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity
PLoS Genetics, 9(3), e1003312.
Ed(s): D. Hughes
MeSH headings : Bacteriophages / genetics; Bacteriophages / immunology; Base Sequence; Biological Evolution; DNA, Intergenic / genetics; Genetics, Population; Immunity / genetics; Interspersed Repetitive Sequences / genetics; Models, Theoretical; Molecular Sequence Data; Mutation; Sequence Analysis, DNA; Streptococcus thermophilus / genetics; Streptococcus thermophilus / immunology; Streptococcus thermophilus / virology
Source: ORCID
Added: January 2, 2020
2013 journal article
The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis
Food Microbiology, 34(1), 164–173.
author keywords: Salmonella Enteritidis; CRISPR-MVLST; Molecular subtyping
MeSH headings : Bacterial Typing Techniques / methods; Electrophoresis, Gel, Pulsed-Field / methods; Feces / microbiology; Humans; Inverted Repeat Sequences; Molecular Sequence Data; Phylogeny; Polymerase Chain Reaction / methods; Salmonella Infections / microbiology; Salmonella enteritidis / classification; Salmonella enteritidis / genetics; Salmonella enteritidis / isolation & purification; Urine / microbiology
Source: ORCID
Added: January 2, 2020
2013 journal article
Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04
BMC GENOMICS, 14(1).
author keywords: Bifidobacterium lactis; Transcriptomics; ABC transporter; GPH transporter; Prebiotics; Glycoside hydrolase
MeSH headings : Bifidobacterium / drug effects; Bifidobacterium / genetics; Cell Membrane / drug effects; Cell Membrane / metabolism; Data Mining; Gene Expression Profiling; Genetic Variation / genetics; Genomics; Multigene Family / genetics; Oligosaccharides / pharmacology; Prebiotics; Transcription, Genetic / drug effects; Up-Regulation / drug effects
Sources: ORCID, Web Of Science
Added: August 6, 2018
2013 journal article
crRNA and tracrRNA guide Cas9-mediated DNA interference in Streptococcus thermophilus
RNA BIOLOGY, 10(5), 841–851.
author keywords: CRISPR; DNA silencing; Type II CRISPR-Cas systems
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Base Sequence; CRISPR-Associated Proteins / chemistry; CRISPR-Associated Proteins / genetics; CRISPR-Associated Proteins / metabolism; Clustered Regularly Interspaced Short Palindromic Repeats; DNA / genetics; Escherichia coli / genetics; Escherichia coli / metabolism; Molecular Sequence Data; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Bacterial / metabolism; Ribonuclease III / chemistry; Ribonuclease III / genetics; Ribonuclease III / metabolism; Sequence Alignment; Streptococcus pyogenes / genetics; Streptococcus pyogenes / metabolism; Streptococcus thermophilus / genetics; Streptococcus thermophilus / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2012 journal article
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
BMC Genomics, 13(1), 533.
author keywords: Lactobacillus casei; Lactic acid bacteria; Comparative genomics; Pan-genome; Supragenome; Evolution; Adaptation
MeSH headings : Adaptation, Physiological / genetics; Biological Evolution; Cluster Analysis; Gene Transfer, Horizontal; Genome, Bacterial; Genomic Islands; Lacticaseibacillus casei / genetics; Phylogeny
Source: ORCID
Added: January 2, 2020
2012 article
Applications of the Versatile CRISPR-Cas Systems
CRISPR-Cas Systems, pp. 267–286.
Source: ORCID
Added: January 2, 2020
2012 article
Applications of the Versatile CRISPR-Cas Systems
CRISPR-Cas Systems, pp. 267–286.
Source: ORCID
Added: January 2, 2020
2012 journal article
CRISPR: New Horizons in Phage Resistance and Strain Identification
Annual Review of Food Science and Technology, 3(1), 143–162.
author keywords: bacteriophage; cas gene; interference; typing; immunity; starter culture
MeSH headings : Bacteriophages / classification; Bacteriophages / genetics; Bacteriophages / physiology; Fermentation; Food Microbiology / trends; Genes, Viral; Gram-Positive Bacteria / classification; Gram-Positive Bacteria / genetics; Gram-Positive Bacteria / metabolism; Gram-Positive Bacteria / virology; Inverted Repeat Sequences; Lysogeny; RNA Interference; RNA, Small Interfering
Source: ORCID
Added: January 2, 2020
2012 journal article
Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
Proceedings of the National Academy of Sciences, 109(39), E2579–E2586.
author keywords: nuclease; site-directed mutagenesis; RNA interference; DNA interference
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; DNA Breaks, Double-Stranded; DNA Breaks, Single-Stranded; Endonucleases / genetics; Endonucleases / metabolism; RNA, Bacterial / genetics; RNA, Bacterial / metabolism; Ribonucleoproteins / genetics; Ribonucleoproteins / metabolism; Streptococcus thermophilus / enzymology; Streptococcus thermophilus / genetics
Source: ORCID
Added: January 2, 2020
2012 journal article
Complete Genome Sequences of Probiotic Strains Bifidobacterium animalis subsp. lactis B420 and Bi-07
Journal of Bacteriology, 194(15), 4131–4132.
MeSH headings : Bifidobacterium / genetics; Bifidobacterium / isolation & purification; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Genome, Bacterial; INDEL Mutation; Molecular Sequence Data; Polymorphism, Single Nucleotide; Probiotics; Repetitive Sequences, Nucleic Acid; Sequence Analysis, DNA
Source: ORCID
Added: January 2, 2020
2012 journal article
Persisting Viral Sequences Shape Microbial CRISPR-based Immunity
PLoS Computational Biology, 8(4), e1002475.
Ed(s): C. Mering
MeSH headings : Computer Simulation; Genetics, Population; Immunogenetic Phenomena / physiology; Inverted Repeat Sequences / physiology; Models, Genetic; Models, Immunological; Virus Physiological Phenomena
Source: ORCID
Added: January 2, 2020
2012 journal article
Phage mutations in response to CRISPR diversification in a bacterial population
Environmental Microbiology, 15(2), 463–470.
MeSH headings : Bacteriophages / genetics; Bacteriophages / physiology; Base Sequence; Biological Evolution; DNA, Intergenic / genetics; Genetic Variation; Genome, Viral / genetics; Humans; Molecular Sequence Data; Mutation; Polymorphism, Single Nucleotide; Streptococcus thermophilus / genetics; Streptococcus thermophilus / virology
Source: ORCID
Added: January 2, 2020
2012 journal article
Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus
PLoS ONE, 7(5), e38077.
Ed(s): H. Bruggemann
MeSH headings : Bacterial Proteins / genetics; Bacteriophages / physiology; Genetic Loci / genetics; Inverted Repeat Sequences / genetics; Proteomics; Streptococcus thermophilus / cytology; Streptococcus thermophilus / genetics; Streptococcus thermophilus / virology; Time Factors; Transcriptome / genetics
Source: ORCID
Added: January 2, 2020
2012 journal article
RNA-mediated programmable DNA cleavage
Nature Biotechnology, 30(9), 836–838.
MeSH headings : Bacteriophages / immunology; DNA Breaks, Double-Stranded; DNA Cleavage; Deoxyribonucleases, Type II Site-Specific / metabolism; Inverted Repeat Sequences; RNA / metabolism; Streptococcus pyogenes / enzymology
Source: ORCID
Added: January 2, 2020
2012 journal article
Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM
PLOS ONE, 7(9).
Ed(s): C. Gibas
MeSH headings : ATP-Binding Cassette Transporters / metabolism; Cellobiose / pharmacology; Gene Expression Regulation, Bacterial / drug effects; Glucans / pharmacology; Isomaltose / analogs & derivatives; Isomaltose / pharmacology; Lactobacillus acidophilus / drug effects; Lactobacillus acidophilus / enzymology; Lactobacillus acidophilus / metabolism; Oligosaccharides / pharmacology; Phosphoenolpyruvate Sugar Phosphotransferase System / metabolism; Prebiotics; Raffinose / pharmacology; Sugar Alcohols / pharmacology
Sources: ORCID, Web Of Science
Added: August 6, 2018
2011 journal article
CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation
Annual Review of Genetics, 45(1), 273–297.
author keywords: coevolution; immunity; interference; RNAi; bacteriophage
MeSH headings : Adaptive Immunity; Archaea / chemistry; Archaea / genetics; Archaea / immunology; Archaea / virology; Bacteria / chemistry; Bacteria / genetics; Bacteria / immunology; Bacteria / virology; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / immunology; Bacteriophages / genetics; Bacteriophages / immunology; CRISPR-Associated Proteins; Computational Biology; Endodeoxyribonucleases / chemistry; Endodeoxyribonucleases / genetics; Escherichia coli Proteins; Evolution, Molecular; Gene Expression Regulation, Archaeal; Gene Expression Regulation, Bacterial; Genetic Loci; Plasmids / immunology; RNA Interference; RNA Processing, Post-Transcriptional; RNA, Archaeal / chemistry; RNA, Archaeal / genetics; RNA, Archaeal / immunology; RNA, Bacterial / chemistry; RNA, Bacterial / genetics; RNA, Bacterial / immunology; RNA, Small Untranslated / chemistry; RNA, Small Untranslated / genetics; RNA, Small Untranslated / immunology; Transcription, Genetic; Virus Diseases / genetics; Virus Diseases / immunology; Virus Diseases / virology
Source: ORCID
Added: January 2, 2020
2011 journal article
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
The EMBO Journal, 30(7), 1335–1342.
author keywords: Cas3; CRISPR; Ecoli subtype; site-directed mutagenesis; Streptococcus thermophilus
MeSH headings : Adenosine Triphosphate / metabolism; Cloning, Molecular; DNA Helicases / genetics; DNA Helicases / metabolism; DNA Mutational Analysis; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Single-Stranded / metabolism; Escherichia coli / genetics; Gene Expression; Models, Biological; Molecular Sequence Data; Mutagenesis, Site-Directed; Plasmids; Repetitive Sequences, Nucleic Acid; Sequence Analysis, DNA; Streptococcus thermophilus / enzymology; Streptococcus thermophilus / genetics
Source: ORCID
Added: January 2, 2020
2011 journal article
Evolution and classification of the CRISPR–Cas systems
Nature Reviews Microbiology, 9(6), 467–477.
MeSH headings : Adaptive Immunity / genetics; Archaea / genetics; Archaeal Proteins / classification; Archaeal Proteins / genetics; Bacterial Proteins / classification; Bacterial Proteins / genetics; Genome, Bacterial; Phylogeny; Repetitive Sequences, Nucleic Acid
Source: ORCID
Added: January 2, 2020
2011 article
Genus Lactobacillus
Lactic Acid Bacteria, pp. 77–91.
Source: ORCID
Added: January 2, 2020
2011 article
Lactic Acid Bacteria Defenses Against Phages
Stress Responses of Lactic Acid Bacteria, pp. 459–478.
Source: ORCID
Added: January 2, 2020
2011 journal article
Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars of Salmonella enterica subsp. enterica
Applied and Environmental Microbiology, 77(6), 1946–1956.
MeSH headings : Alleles; Cluster Analysis; DNA, Bacterial / genetics; Electrophoresis, Gel, Pulsed-Field; Molecular Sequence Data; Multilocus Sequence Typing / methods; Polymerase Chain Reaction; Polymorphism, Genetic / genetics; Salmonella enterica / classification; Salmonella enterica / genetics; Virulence / genetics
Source: ORCID
Added: January 2, 2020
2011 journal article
Short communication: The complete genome sequence of Bifidobacterium animalis subspecies animalis ATCC 25527T and comparative analysis of growth in milk with B. animalis subspecies lactis DSM 10140T
Journal of Dairy Science, 94(12), 5864–5870.
author keywords: Bifidobacterium animalis ssp animalis; genome; growth in milk; clustered regularly interspaced short palindromic repeats (CRISPR)
MeSH headings : Animals; Base Sequence; Bifidobacterium / genetics; Bifidobacterium / growth & development; DNA, Intergenic / genetics; Genome, Bacterial / genetics; Inverted Repeat Sequences / genetics; Milk / microbiology; Molecular Sequence Data; Sequence Alignment; Sequence Analysis, DNA / methods; Sequence Homology, Nucleic Acid
Source: ORCID
Added: January 2, 2020
2011 journal article
Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)
Applied and Environmental Microbiology, 77(13), 4520–4526.
MeSH headings : Animals; Chickens; Cluster Analysis; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Disease Outbreaks; Eggs; Environmental Microbiology; Food Microbiology; Genotype; Humans; Inverted Repeat Sequences; Molecular Sequence Data; Molecular Typing / methods; Salmonella Infections / microbiology; Salmonella Infections, Animal / microbiology; Salmonella enteritidis / classification; Salmonella enteritidis / genetics; Salmonella enteritidis / isolation & purification; Sequence Analysis, DNA; United States / epidemiology; Virulence Factors / genetics
Source: ORCID
Added: January 2, 2020
2011 journal article
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
Nucleic Acids Research, 39(21), 9275–9282.
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Bacteriophage lambda / genetics; Base Sequence; Cloning, Molecular; DNA, Bacterial / chemistry; Escherichia coli / genetics; Escherichia coli / immunology; Escherichia coli / virology; Immunity; Molecular Sequence Data; Mutation; Nucleotide Motifs; Plasmids / genetics; Protein Structure, Tertiary; Repetitive Sequences, Nucleic Acid; Streptococcus thermophilus / genetics; Transformation, Bacterial
Source: ORCID
Added: January 2, 2020
2011 journal article
Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(43), 17785–17790.
author keywords: lactose permease; catabolite repression element
MeSH headings : DNA, Complementary / genetics; Gene Expression Regulation, Bacterial / physiology; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / metabolism; Membrane Transport Proteins / metabolism; Microarray Analysis; Oligonucleotide Array Sequence Analysis; Oligosaccharides / pharmacokinetics; Prebiotics; Reverse Transcriptase Polymerase Chain Reaction; beta-Galactosidase / genetics; beta-Galactosidase / metabolism
Sources: ORCID, Web Of Science
Added: August 6, 2018
2010 journal article
Analysis of the human intestinal epithelial cell transcriptional response toLactobacillus acidophilus, Lactobacillus salivarius, Bifidobacterium lactisandEscherichia coli
Beneficial Microbes, 1(3), 283–295.
author keywords: probiotics; Escherichia coli; microarray; cell line models; epithelial cells
MeSH headings : Bifidobacterium / physiology; Cell Line; Epithelial Cells / drug effects; Epithelial Cells / metabolism; Epithelial Cells / microbiology; Escherichia coli / physiology; Gene Expression Profiling; Gene Expression Regulation / drug effects; Humans; Intestinal Mucosa / metabolism; Intestines / cytology; Intestines / drug effects; Intestines / microbiology; Lactobacillus / physiology; Models, Biological; Probiotics / pharmacology; Signal Transduction; Transcriptional Activation / drug effects
Source: ORCID
Added: January 2, 2020
2010 journal article
CRISPR/Cas, the Immune System of Bacteria and Archaea
Science, 327(5962), 167–170.
MeSH headings : Archaea / genetics; Archaea / immunology; Archaea / virology; Archaeal Proteins / metabolism; Bacteria / genetics; Bacteria / immunology; Bacteria / virology; Bacterial Proteins / metabolism; Bacteriophages / genetics; Bacteriophages / physiology; Base Sequence; Conserved Sequence; Gene Transfer, Horizontal; Genes, Archaeal; Genes, Bacterial; Genetic Loci; Genome, Archaeal; Genome, Bacterial; Genome, Viral; Mutation; Plasmids; RNA Interference; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Bacterial / genetics; RNA, Bacterial / metabolism; Repetitive Sequences, Nucleic Acid
Source: ORCID
Added: January 2, 2020
2010 journal article
Construction of vectors for inducible and constitutive gene expression in Lactobacillus
Microbial Biotechnology, 4(3), 357–367.
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression; Gene Expression Regulation, Bacterial; Genetic Vectors / genetics; Genetic Vectors / metabolism; Lactobacillus / genetics; Lactobacillus / metabolism; Operon; Plasmids / genetics; Plasmids / metabolism
Sources: ORCID, NC State University Libraries
Added: August 6, 2018
2010 journal article
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
Nature, 468(7320), 67–71.