Ryan Joseph Spurney

College of Engineering

Works (3)

Updated: August 5th, 2023 21:16

2022 journal article

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

PLANT CELL, 34(1), 535–556.

By: H. Thomas*, L. Broeck n, R. Spurney n, R. Sozzani n & M. Frank*

co-author countries: United States of America 🇺🇸
MeSH headings : Capsicum / genetics; Capsicum / physiology; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks; Homeodomain Proteins / genetics; Homeodomain Proteins / metabolism; Solanum lycopersicum / genetics; Solanum lycopersicum / physiology; Plant Proteins / genetics; Plant Proteins / metabolism
Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 article

Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification

MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 47–65.

co-author countries: United States of America 🇺🇸
author keywords: Gene regulatory network inference; RNA sequencing; Bioinformatics; Network visualization
MeSH headings : Algorithms; Amino Acid Motifs / genetics; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation / genetics; Gene Regulatory Networks / genetics; Multigene Family; RNA-Seq / methods; Software; Spatio-Temporal Analysis; Workflow
Sources: Web Of Science, ORCID
Added: October 4, 2021

2020 journal article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL, 101(3), 716–730.

By: R. Spurney n, L. Broeck n, N. Clark n, A. Fisher n, M. Balaguer n & R. Sozzani n

co-author countries: United States of America 🇺🇸
author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
Sources: Web Of Science, ORCID
Added: December 9, 2019

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