2024 journal article
Beyond low lignin: Identifying the primary barrier to plant biomass conversion by fermentative bacteria
SCIENCE ADVANCES, 10(42).
2024 journal article
Chalcopyrite bioleaching efficacy by extremely thermoacidophilic archaea leverages balanced iron and sulfur biooxidation
BIORESOURCE TECHNOLOGY, 408.
2024 article
Complete genome sequence for the extremely thermophilic bacterium Anaerocellum danielii (DSM:8977)
Manesh, M. J. H., Bing, R. G., Willard, D. J., Adams, M. W. W., & Kelly, R. M. (2024, January 24). (K. M. Stedman, Ed.). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 1.
Ed(s): K. Stedman
2024 article
Complete genome sequence for the thermoacidophilic archaeon <i>Metallosphaera sedula</i> (DSM:5348)
Manesh, M. J. H., Bing, R. G., Willard, D. J., & Kelly, R. M. (2024, February 8). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.
2024 journal article
Engineering ethanologenicity into the extremely thermophilic bacterium Anaerocellum<i> (</i> f. Caldicellulosiriuptor) bescii
METABOLIC ENGINEERING, 86, 99–114.
2024 article
Phenotype-driven assessment of the ancestral trajectory of sulfur biooxidation in the thermoacidophilic archaea Sulfolobaceae
Willard, D. J., Manesh, M. J. H., Bing, R. G., Alexander, B. H., & Kelly, R. M. (2024, July 2). MBIO, Vol. 7.
2023 article
Complete Genome Sequences of Caldicellulosiruptor acetigenus DSM 7040, Caldicellulosiruptor morganii DSM 8990 (RT8.B8), and Caldicellulosiruptor naganoensis DSM 8991 (NA10)
Bing, R. G. G., Willard, D. J. J., Manesh, M. J. H., Laemthong, T., Crosby, J. R. R., Adams, M. W. W., & Kelly, R. M. M. (2023, February 1). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.
2023 journal article
Complete Genome Sequences of Two Thermophilic Indigenous Bacteria Isolated from Wheat Straw, Thermoclostridium stercorarium subsp. Strain RKWS1 and Thermoanaerobacter sp. Strain RKWS2
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 12(3).
2023 article
Complete genome sequence for the thermoacidophilic archaeon <i>Sulfuracidifex</i> (f<i>. Sulfolobus</i>) <i>metallicus</i> DSM 6482
Willard, D. J., Manesh, M. J. H., Bing, R. G., & Kelly, R. M. (2023, December 6). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 12.
2023 review
Extremely thermoacidophilic archaea for metal bioleaching:<i> What</i><i> do</i><i> their</i> genomes tell Us?
[Review of ]. BIORESOURCE TECHNOLOGY, 391.
2023 article
Innovating Life Sciences Laboratory Training: Molecular Biology Laboratory Education Modules (MBLEMs) as a Model for Advanced Training at Diverse Institutions
JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 299, pp. S260–S260.
2023 article
Interplay between transcriptional regulators and VapBC toxin-antitoxin loci during thermal stress response in extremely thermoacidophilic archaea
Cooper, C. R., Lewis, A. M., Notey, J. S., Mukherjee, A., Willard, D. J., Blum, P. H., & Kelly, R. M. (2023, February 24). ENVIRONMENTAL MICROBIOLOGY, Vol. 2.
2023 article
Manipulating Fermentation Pathways in the Hyperthermophilic Archaeon Pyrococcus furiosus for Ethanol Production up to 95 degrees C Driven by Carbon Monoxide Oxidation
Lipscomb, G. L., Crowley, A. T., Nguyen, D. M. N., Keller, M. W., Hailey C. O'Quinn, Tanwee, T. N. N., … Adams, M. W. W. (2023, May 10). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 5.
2023 article
Metabolic engineering of <i>Caldicellulosiruptor bescii</i> for 2,3-butanediol production from unpretreated lignocellulosic biomass and metabolic strategies for improving yields and titers
Tanwee, T. N. N., Lipscomb, G. L., Vailionis, J. L., Zhang, K., Bing, R. G., Hailey C. O'Quinn, … Adams, M. W. W. (2023, December 22). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 12.
2023 journal article
Multiplex CRISPR editing of wood for sustainable fiber production
SCIENCE, 381(6654), 216-+.
2023 article
Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus
Vailionis, J. L., Zhao, W., Zhang, K., Rodionov, D. A., Lipscomb, G. L., Tanwee, T. N. N., … Zhang, Y. (2023, June 8). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 6.
2023 journal article
Role of cell-substrate association during plant biomass solubilization by the extreme thermophile Caldicellulosiruptor bescii
EXTREMOPHILES, 27(1).
2023 article
Stay or Go: Sulfolobales Biofilm Dispersal Is Dependent on a Bifunctional VapB Antitoxin
Lewis, A. M., Willard, D. J., Manesh, M. J. H. J., Sivabalasarma, S., Albers, S.-V., & Kelly, R. M. (2023, April 10). MBIO, Vol. 4.
2023 journal article
Whither the genus Caldicellulosiruptor and the order Thermoanaerobacterales: phylogeny, taxonomy, ecology, and phenotype
FRONTIERS IN MICROBIOLOGY, 14.
2022 journal article
<p>Plant biomass fermentation by the extreme thermophile Caldicellulosiruptor bescii for co-production of green hydrogen and acetone: Technoeconomic analysis</p>
BIORESOURCE TECHNOLOGY, 348.
2022 article
Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization
Crosby, J. R., Laemthong, T., Bing, R. G., Zhang, K., Tanwee, T. N. N., Lipscomb, G. L., … Kelly, R. M. (2022, October 11). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 10.
2022 article
Engineering Caldicellulosiruptor bescii with Surface Layer Homology Domain-Linked Glycoside Hydrolases Improves Plant Biomass Solubilization
Laemthong, T., Bing, R. G., Crosby, J. R., Adams, M. W. W., & Kelly, R. M. (2022, September 28). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 9.
2022 journal article
Fermentative conversion of unpretreated plant biomass: A thermophilic threshold for indigenous microbial growth
BIORESOURCE TECHNOLOGY, 367.
2021 chapter
Enzymes from extremely thermophilic bacteria and archaea: Current status and future prospects
In N. A. Arora, S. Agnihotri, & J. Mishra (Eds.), Extremozymes and their Industrial Applications. St. Louis, MO: Elsevier Academic Press.
Ed(s): N. Arora, S. Agnihotri & J. Mishra
2021 article
Fox Cluster determinants for iron biooxidation in the extremely thermoacidophilic Sulfolobaceae
Counts, J. A., Vitko, N. P., & Kelly, R. M. (2021, August 30). ENVIRONMENTAL MICROBIOLOGY, Vol. 8.
2021 journal article
Genome-Scale Metabolic Model of Caldicellulosiruptor bescii Reveals Optimal Metabolic Engineering Strategies for Bio-based Chemical Production
MSystems, 6(3).
Ed(s): Z. Summers
2021 journal article
Integrating Bioinformatics Tools into Inquiry-based Molecular Biology Laboratory Education Modules
Frontiers in Education, 6.
Contributors: C. Goller n , M. Srougi n , S. Chen n , L. Schenkman n & n
2021 journal article
Intersection of Biotic and Abiotic Sulfur Chemistry Supporting Extreme Microbial Life in Hot Acid
JOURNAL OF PHYSICAL CHEMISTRY B, 125(20), 5243–5257.
2021 journal article
Intersection of Biotic and Abiotic Sulfur Chemistry Supporting Extreme Microbial Life in Hot Acid
Journal of Physical Chemistry B, 125(20), 5243–5257.
2021 journal article
Thermophilic microbial deconstruction and conversion of natural and transgenic lignocellulose
Environmental Microbiology Reports, 13(3), 272–293.
2021 journal article
Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii
MSystems, 6(3).
Ed(s): Z. Summers
2020 journal article
A genomic catalog of Earth’s microbiomes
Nature Biotechnology, 39, 499–509.
2020 journal article
Engineering the cellulolytic extreme thermophile Caldicellulosiruptor bescii to reduce carboxylic acids to alcohols using plant biomass as the energy source
Journal of Industrial Microbiology and Biotechnology, 47(8), 585–597.
2020 journal article
Genome Sequences of Five Type Strain Members of the Archaeal Family Sulfolobaceae, Acidianus ambivalens, Acidianus infernus, Stygiolobus azoricus, Sulfuracidifex metallicus, and Sulfurisphaera ohwakuensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(11).
2020 journal article
Life in hot acid: a genome‐based reassessment of the archaeal order Sulfolobales
Environmental Microbiology, 23(7), 3568–3584.
2020 journal article
Metabolically engineeredCaldicellulosiruptor besciias a platform for producing acetone and hydrogen from lignocellulose
BIOTECHNOLOGY AND BIOENGINEERING, 117(12), 3799–3808.
2020 journal article
Modification of the glycolytic pathway in Pyrococcus furiosus and the implications for metabolic engineering
EXTREMOPHILES, 24(4), 511–518.
2020 journal article
The biology of thermoacidophilic archaea from the order Sulfolobales
FEMS Microbiology Reviews, 45(4).
2020 journal article
Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar
BIOTECHNOLOGY FOR BIOFUELS, 13(1).
2019 journal article
Determinants of sulphur chemolithoautotrophy in the extremely thermoacidophilic Sulfolobales
ENVIRONMENTAL MICROBIOLOGY, 21(10), 3696–3710.
2019 journal article
Extreme thermophiles as emerging metabolic engineering platforms
Current Opinion in Biotechnology, 59, 55–64.
2019 journal article
Lignocellulose solubilization and conversion by extremely thermophilic Caldicellulosiruptor bescii improves by maintaining metabolic activity
BIOTECHNOLOGY AND BIOENGINEERING, 116(8), 1901–1908.
2019 journal article
Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii
NATURE COMMUNICATIONS, 10(1).
Contributors: C. Straub n, P. Khatibi n, J. Wang n , J. Conway n, A. Williams-Rhaesa *, I. Peszlen n , V. Chiang n, M. Adams *, n
2019 article
The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'
Lee, L. L., Crosby, J. R., Rubinstein, G. M., Laemthong, T., Bing, R. G., Straub, C. T., … Kelly, R. M. (2020, January). EXTREMOPHILES, Vol. 24, pp. 1–15.
2019 journal article
The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis
JOURNAL OF BIOLOGICAL CHEMISTRY, 294(25), 9995–10005.
2018 journal article
A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum
BIOTECHNOLOGY AND BIOENGINEERING, 115(12), 2951–2961.
2018 review
Biotechnology of extremely thermophilic archaea
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 42(5), 543–578.
2018 journal article
Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(3).
2018 journal article
Complete Genome Sequences of Extremely Thermoacidophilic Metal-Mobilizing Type Strain Members of the Archaeal Family Sulfolobaceae, Acidianus brierleyi DSM-1651, Acidianus sulfidivorans DSM-18786, and Metallosphaera hakonensis DSM-7519
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7(2).
2018 journal article
Engineering redox-balanced ethanol production in the cellulolytic and extremely thermophilic bacterium, Caldicellulosiruptor bescii
Metabolic Engineering Communications, 7, e00073.
2018 journal article
Extremely Thermoacidophilic Metallosphaera Species Mediate Mobilization and Oxidation of Vanadium and Molybdenum Oxides
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(5).
2018 journal article
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
Applied and Environmental Microbiology, 84(9), e02694–17.
Ed(s): I. Cann
2018 journal article
Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii
EXTREMOPHILES, 22(4), 629–638.
2018 journal article
Novel multidomain, multifunctional glycoside hydrolases from highly lignocellulolytic Caldicellulosiruptor species
AICHE JOURNAL, 64(12), 4218–4228.
2018 journal article
Parsing in vivo and in vitro contributions to microcrystalline cellulose hydrolysis by multidomain glycoside hydrolases in the Caldicellulosiruptor bescii secretome
BIOTECHNOLOGY AND BIOENGINEERING, 115(10), 2426–2440.
2018 journal article
Secretion and fusion of biogeochemically active archaeal membrane vesicles
GEOBIOLOGY, 16(6), 659–673.
2018 journal article
Sequential processing with fermentative Caldicellulosiruptor kronotskyensis and chemolithoautotrophic Cupriavidus necator for converting rice straw and CO2 to polyhydroxybutyrate
BIOTECHNOLOGY AND BIOENGINEERING, 115(6), 1624–1629.
2018 journal article
Simultaneous biosynthesis of (R)-acetoin and ethylene glycol from D-xylose through in vitro metabolic engineering
Metabolic Engineering Communications, 7, e00074.
2018 journal article
The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate
BIOTECHNOLOGY FOR BIOFUELS, 11.
2018 journal article
Uncoupling Fermentative Synthesis of Molecular Hydrogen from Biomass Formation in Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(17).
2017 journal article
Bioavailability of Carbohydrate Content in Natural and Transgenic Switchgrasses for the Extreme Thermophile Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(17).
2017 journal article
C aldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose
Microbial Biotechnology, 10(6), 1546–1557.
2017 journal article
Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island
Extremophiles, 21(4), 733–742.
2017 journal article
Ethanol production by the hyperthermophilic archaeon Pyrococcus furiosus by expression of bacterial bifunctional alcohol dehydrogenases
Microbial Biotechnology, 10(6), 1535–1545.
2017 review
Extremely thermophilic energy metabolisms: biotechnological prospects
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 45, 104–112.
2017 journal article
Functional Analysis of the Glucan Degradation Locus in Caldicellulosiruptor bescii Reveals Essential Roles of Component Glycoside Hydrolases in Plant Biomass Deconstruction
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(24).
2017 journal article
Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(14).
2017 journal article
Impact of growth mode, phase, and rate on the metabolic state of the extremely thermophilic archaeon Pyrococcus furiosus
BIOTECHNOLOGY AND BIOENGINEERING, 114(12), 2947–2954.
2017 review
Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms
[Review of ]. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 9(3).
2017 report
Sequestration of CO2 with H2 into useful products
(US Patent No. 9,587,256).
2017 journal article
Two Distinct alpha-L-Arabinofuranosidases in Caldicellulosiruptor Species Drive Degradation of Arabinose-Based Polysaccharides
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(13).
2017 journal article
VapC toxins drive cellular dormancy under uranium stress for the extreme thermoacidophile Metallosphaera prunae
ENVIRONMENTAL MICROBIOLOGY, 19(7), 2831–2842.
2016 journal article
A Highly Thermostable Kanamycin Resistance Marker Expands the Tool Kit for Genetic Manipulation of Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(14), 4421–4428.
2016 journal article
Ancillary contributions of heterologous biotin protein ligase and carbonic anhydrase for CO2 incorporation into 3-hydroxypropionate by metabolically engineered Pyrococcus furiosus
Biotechnology and Bioengineering, 113(12), 2652–2660.
2016 chapter
Extreme Thermophiles as Metabolic Engineering Platforms: Strategies and Current Perspective
In C. Wittmann & J. C. Liao (Eds.), Industrial Biotechnology: Microorganisma (Vol. 1, pp. 505–580).
Ed(s): C. Wittmann & J. Liao
2016 journal article
Heterologous Production of an Energy-Conserving Carbon Monoxide Dehydrogenase Complex in the Hyperthermophile Pyrococcus furiosus
FRONTIERS IN MICROBIOLOGY, 7.
2016 journal article
Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species
JOURNAL OF BIOLOGICAL CHEMISTRY, 291(13), 6732–6747.
2016 journal article
Reaction kinetic analysis of the 3-hydroxypropionate/4-hydroxybutyrate CO2 fixation cycle in extremely thermoacidophilic archaea
METABOLIC ENGINEERING, 38, 446–463.
2016 article
The renaissance of life near the boiling point - at last, genetics and metabolic engineering
Adams, M. W. W., & Kelly, R. M. (2017, January). MICROBIAL BIOTECHNOLOGY, Vol. 10, pp. 37–39.
2016 journal article
Transcriptomes of the Extremely Thermoacidophilic Archaeon Metallosphaera sedula Exposed to Metal "Shock" Reveal Generic and Specific Metal Responses
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(15), 4613–4627.
2015 journal article
A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7339–7347.
2015 journal article
Alcohol Selectivity in a Synthetic Thermophilic n-Butanol Pathway Is Driven by Biocatalytic and Thermostability Characteristics of Constituent Enzymes
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7187–7200.
2015 journal article
Bioprocessing analysis of Pyrococcus furiosus strains engineered for CO2-based 3-hydroxypropionate production
BIOTECHNOLOGY AND BIOENGINEERING, 112(8), 1533–1543.
2015 journal article
Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7159–7170.
2015 journal article
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “ Thermoanaerobacter cellulolyticus ”
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “ Thermoanaerobacter cellulolyticus .” Genome Announcements, 3(3).
2015 journal article
Discrete and Structurally Unique Proteins (Tapirins) Mediate Attachment of Extremely Thermophilic Caldicellulosiruptor Species to Cellulose
JOURNAL OF BIOLOGICAL CHEMISTRY, 290(17), 10645–10656.
2015 review
Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals
[Review of ]. FRONTIERS IN MICROBIOLOGY, 6.
2015 report
Genetically engineered microbes and methods for converting organic acid to alcohols
(US Patent Application No. 14/670,601).
2015 journal article
Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins
PROTEOMICS, 15(15), 2678–2690.
Contributors: J. Schilling n, A. Nepomuceno n, A. Planchart n , J. Yoder n , n , D. Muddiman n , H. Daniels n, N. Hiramatsu*, B. Reading n
2015 journal article
Temperature-dependent acetoin production by Pyrococcus furiosus is catalyzed by a biosynthetic acetolactate synthase and its deletion improves ethanol production
METABOLIC ENGINEERING, 34, 71–79.
2015 review
The Confluence of Heavy Metal Biooxidation and Heavy Metal Resistance: Implications for Bioleaching by Extreme Thermoacidophiles
[Review of ]. MINERALS, 5(3), 397–451.
2014 journal article
A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe
METABOLIC ENGINEERING, 27, 101–106.
2014 journal article
A mutant ('lab strain') of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology
EXTREMOPHILES, 19(2), 269–281.
2014 journal article
Conversion of 4-Hydroxybutyrate to Acetyl Coenzyme A and Its Anapleurosis in the Metallosphaera sedula 3-Hydroxypropionate/4-Hydroxybutyrate Carbon Fixation Pathway
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(8), 2536–2545.
2014 journal article
Cross-linked Polymer Nanofibers for Hyperthermophilic Enzyme Immobilization: Approaches to Improve Enzyme Performance
ACS APPLIED MATERIALS & INTERFACES, 6(15), 11899–11906.
2014 journal article
Deletion of acetyl-CoA synthetases I and II increases production of 3-hydroxypropionate by the metabolically-engineered hyperthermophile Pyrococcus furiosus
METABOLIC ENGINEERING, 22, 83–88.
2014 chapter
Functional Genomics
In R. Cavicchioli (Ed.), Archaea: Molecular and Cellular Biology (pp. 434–462).
Ed(s): R. Cavicchioli
2014 journal article
Nanofibrous membranes for single-step immobilization of hyperthermophilic enzymes
JOURNAL OF MEMBRANE SCIENCE, 472, 251–260.
2014 journal article
Production of lignofuels and electrofuels by extremely thermophilic microbes
Biofuels, 5(5), 499–515.
2014 journal article
Role of an Archaeal PitA Transporter in the Copper and Arsenic Resistance of Metallosphaera sedula, an Extreme Thermoacidophile
JOURNAL OF BACTERIOLOGY, 196(20), 3562–3570.
2014 journal article
Single gene insertion drives bioalcohol production by a thermophilic archaeon
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111(49), 17618–17623.
2014 chapter
The Extremely Thermophilic Genus Caldicellulosiruptor: Physiological and Genomic Characteristics for Complex Carbohydrate Conversion to Molecular Hydrogen
In Microbial BioEnergy: Hydrogen Production (pp. 177–195).
2014 chapter
The Order Thermococcales and the Family Thermococcaceae
In The Prokaryotes (pp. 363–383).
2013 review
Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 24(3), 376–384.
2013 journal article
Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature
Energy & Environmental Science, 6(7), 2186.
2013 journal article
Engineering Hydrogen Gas Production from Formate in a Hyperthermophile by Heterologous Production of an 18-Subunit Membrane-bound Complex
JOURNAL OF BIOLOGICAL CHEMISTRY, 289(5), 2873–2879.
2013 journal article
Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 110(15), 5840–5845.
2013 journal article
Stationary Phase and Nutrient Levels Trigger Transcription of a Genomic Locus Containing a Novel Peptide (TM1316) in the Hyperthermophilic Bacterium Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(21), 6637–6646.
2013 review
Thermophilic lignocellulose deconstruction
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 38(3), 393–448.
2012 journal article
A thermophile under pressure: Transcriptional analysis of the response of Caldicellulosiruptor saccharolyticus to different H-2 partial pressures
INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, 38(4), 1837–1849.
2012 journal article
Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass
JOURNAL OF BACTERIOLOGY, 194(15), 4015–4028.
2012 journal article
Epimerase (Msed_0639) and Mutase (Msed_0638 and Msed_2055) Convert (S)-Methylmalonyl-Coenzyme A (CoA) to Succinyl-CoA in the Metallosphaera sedula 3-Hydroxypropionate/4-Hydroxybutyrate Cycle
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78(17), 6194–6202.
2012 journal article
Extreme thermophiles: moving beyond single-enzyme biocatalysis
Current Opinion in Chemical Engineering, 1(4), 363–372.
2012 journal article
Hyperthermophilic Thermotoga Species Differ with Respect to Specific Carbohydrate Transporters and Glycoside Hydrolases
Applied and Environmental Microbiology, 78(6), 1978–1986.
2012 journal article
Role of 4-Hydroxybutyrate-CoA Synthetase in the CO2 Fixation Cycle in Thermoacidophilic Archaea
JOURNAL OF BIOLOGICAL CHEMISTRY, 288(6), 4012–4022.
2012 journal article
Uranium extremophily is an adaptive, rather than intrinsic, feature for extremely thermoacidophilic Metallosphaera species
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(41), 16702–16707.
2011 journal article
Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis , Caldicellulosiruptor kristjanssonii , Caldicellulosiruptor kronotskyensis , Caldicellulosiruptor owensensis , and Caldicellulosiruptor lactoaceticus
Journal of Bacteriology, 193(6), 1483–1484.
2011 journal article
Extremely Thermophilic Routes to Microbial Electrofuels
ACS CATALYSIS, 1(9), 1043–1050.
2011 journal article
Glycoside Hydrolase Inventory Drives Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
BIOTECHNOLOGY AND BIOENGINEERING, 108(7), 1559–1569.
2011 journal article
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725
NUCLEIC ACIDS RESEARCH, 39(8), 3240–3254.
2011 journal article
S-Layer Homology Domain Proteins Csac_0678 and Csac_2722 Are Implicated in Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78(3), 768–777.
2011 journal article
Starch Self-Processing in Transgenic Sweet Potato Roots Expressing a Hyperthermophilic alpha-Amylase
BIOTECHNOLOGY PROGRESS, 27(2), 351–359.
2011 journal article
VapC6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote Sulfolobus solfataricus
RNA, 17(7), 1381–1392.
2010 journal article
A novel alpha-d-galactosynthase from Thermotoga maritima converts beta-d-galactopyranosyl azide to alpha-galacto-oligosaccharides
GLYCOBIOLOGY, 21(4), 448–456.
2010 chapter
Enzymes, Extremely Thermophilic
In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology.
Ed(s): M. Flickinger
2010 chapter
Extremely thermophilic microorganisms
In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology (2nd ed., Vol. 5, pp. 3481–3499). NY: John Wiley and Sons.
Ed(s): M. Flickinger
2010 entry reference
Extremophiles
(I. T. Horváth, Ed.).
Ed(s): I. Horváth
2010 journal article
Impact of Molecular Hydrogen on Chalcopyrite Bioleaching by the Extremely Thermoacidophilic Archaeon Metallosphaera sedula
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(8), 2668–2672.
2010 journal article
N-terminal Fusion of a Hyperthermophilic Chitin-Binding Domain to Xylose Isomerase from Thermotoga neapolitana Enhances Kinetics and Thermostability of Both Free and Immobilized Enzymes
BIOTECHNOLOGY PROGRESS, 26(4), 993–1000.
2010 journal article
Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 377–389.
2010 article
Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2 (vol 398, pg 377, 2010)
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1837–1837.
2010 journal article
Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 391–404.
2010 article
Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting (vol 398, pg 391, 2010)
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1839–1839.
2010 journal article
Phylogenetic, Microbiological, and Glycoside Hydrolase Diversities within the Extremely Thermophilic, Plant Biomass-Degrading Genus Caldicellulosiruptor
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(24), 8084–8092.
2010 journal article
The genus Thermotoga: recent developments
ENVIRONMENTAL TECHNOLOGY, 31(10), 1169–1181.
2009 journal article
Carbohydrate Utilization Patterns for the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus Reveal Broad Growth Substrate Preferences
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 75(24), 7718–7724.
2009 journal article
Integrating modern biology into the ChE DNA through a campus-wide core laboratory education program
Chemical Engineering Education, 43(4), 257–264.
2009 journal article
Physiological Versatility of the Extremely Thermoacidophilic Archaeon Metallosphaera sedula Supported by Transcriptomic Analysis of Heterotrophic, Autotrophic, and Mixotrophic Growth
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(3), 931–935.
2009 journal article
Plant cell calcium-rich environment enhances thermostability of recombinantly produced α-amylase from the hyperthermophilic bacterium Thermotoga maritime
Biotechnology and Bioengineering, 104(5), 947–956.
2009 journal article
Role of vapBC toxin–antitoxin loci in the thermal stress response of Sulfolobus solfataricus
Biochemical Society Transactions, 37(1), 123–126.
2009 journal article
Temperature, not LuxS, mediates AI-2 formation in hydrothermal habitats
FEMS MICROBIOLOGY ECOLOGY, 68(2), 173–181.
2008 review
Extremely thermophilic microorganisms for biomass conversion: status and prospects
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 19(3), 210–217.
2008 chapter
Functional Genomics of Stress Response in Extremophilic Archaea
In P. Blum (Ed.), Archaea: New Models for Prokaryotic Biology. Norfolk, UK: Caister Academic Press.
Ed(s): P. Blum
2008 review
Hydrogenesis in hyperthermophilic microorganisms: Implications for biofuels
[Review of ]. METABOLIC ENGINEERING, 10(6), 394–404.
2008 journal article
Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(21), 6720–6729.
2008 journal article
Identification of Components of Electron Transport Chains in the Extremely Thermoacidophilic Crenarchaeon Metallosphaera sedula through Iron and Sulfur Compound Oxidation Transcriptomes
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(24), 7723–7732.
2008 review
Life in hot acid: Pathway analyses in extremely thermoacidophilic archaea
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 19(5), 445–453.
2008 journal article
Microwave activation of enzymatic catalysis
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 130(31), 10048-+.
2008 journal article
Polysaccharide Degradation and Synthesis by Extremely Thermophilic Anaerobes
Annals of the New York Academy of Sciences, 1125(1), 322–337.
2007 chapter
Archaeal 20S Proteasome: A Simple and Thermostable Model System for the Core Particle
In F. Robb, G. Antranikian, D. Grogan, & A. Driessen (Eds.), Thermophiles (pp. 347–360).
Ed(s): F. Robb, G. Antranikian, D. Grogan & A. Driessen
2007 journal article
Biochemical analysis of Thermotoga maritima GH36 alpha-galactosidase (TmGalA) confirms the mechanistic commonality of clan GH-D glycoside hydrolases
BIOCHEMISTRY, 46(11), 3319–3330.
2007 chapter
Biochemical/Biomolecular engineering
In McGraw-Hill encyclopedia of science & technology (10th ed.). New York: McGraw-Hill.
2007 journal article
Functional-genomics-based identification and characterization of open reading frames encoding alpha-glucoside-processing enzymes in the hyperthermophilic archaeon Pyrococcus furiosus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(4), 1281–1283.
2007 journal article
Impact of substrate glycoside linkage. and elemental sulfur on bioenergetics, of and hydrogen production by the hyperthermophilic Archaeon Pyrococcus furiosus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(21), 6842–6853.
2007 journal article
Probing the stability of native and activated forms of alpha(2)-macroglobulin
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 42(1), 62–67.
2007 journal article
Responses of wild-type and resistant strains of the hyperthermophilic bacterium Thermotoga maritima to chloramphenicol challenge
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 73(15), 5058–5065.
2007 journal article
Rheological properties of guar galactomannan solutions during hydrolysis with galactomannanase and alpha-galactosidase enzyme mixtures
BIOMACROMOLECULES, 8(3), 949–956.
2007 journal article
The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74(3), 682–692.
2006 journal article
Colocation of genes encoding a tRNA-mRNA hybrid and a putative signaling peptide on complementary strands in the genome of the hyperthermophilic bacterium Thermotoga maritima
JOURNAL OF BACTERIOLOGY, 188(19), 6802–6807.
2006 journal article
Dynamic metabolic adjustments and genome plasticity are implicated in the heat shock response of the extremely thermoacidophilic Archaeon Sulfolobus solfataricus
JOURNAL OF BACTERIOLOGY, 188(12), 4553–4559.
2006 journal article
Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103(10), 3816–3821.
2006 journal article
Identification of Eggshell Membrane Proteins and Purification of Ovotransferrin and β-NAGase from Hen Egg White
The Protein Journal, 25(1), 71–81.
2006 review
Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 30(6), 872–905.
2006 journal article
Role of the beta 1 subunit in the function and stability of the 20S proteasome in the hyperthermophilic archaeon Pyrococcus furiosus
JOURNAL OF BACTERIOLOGY, 189(2), 583–590.
2006 journal article
The Thermotoga maritima phenotype is impacted by syntrophic interaction with Methanococcus jannaschii in hyperthermophilic coculture
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(1), 811–818.
2006 journal article
Transcriptional and biochemical analysis of starch metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
JOURNAL OF BACTERIOLOGY, 188(6), 2115–2125.
2006 chapter
Transcriptomics, Proteomics, and Structural Genomics ofPyrococcus Furiosus
In Archaea (pp. 239–246).
2005 journal article
Aflatoxin conducive and non-conducive growth conditions reveal new gene associations with aflatoxin production
FUNGAL GENETICS AND BIOLOGY, 42(6), 506–518.
2005 journal article
An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima
JOURNAL OF BACTERIOLOGY, 187(21), 7267–7282.
2005 patent
Compositions for fracturing subterranean formations
Washington, DC: U.S. Patent and Trademark Office.
2005 journal article
Denaturation and aggregation of three alpha-lactalbumin preparations at neutral pH
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 53(8), 3182–3190.
2005 journal article
Genorne-wide transcriptional variation within and between steady states for continuous growth of the hyperthermophile Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(9), 5572–5576.
2005 journal article
Influence of divalent cations on the structural thermostability and thermal inactivation kinetics of class II xylose isomerases
FEBS JOURNAL, 272(6), 1454–1464.
2004 chapter
Applications of Genomic Data: Enzyme Discovery and Microbial Genomics
In C. M. Fraser, T. Read, & K. E. Nelson (Eds.), Microbial Genomics. Totowa, NJ: Humana Press, Inc.
Ed(s): C. Fraser, T. Read & K. Nelson
2004 chapter
Expression of Extremophilic Proteins
In F. Baneyx (Ed.), Expression Technologies: Current Status and Future Trends. Horizon Scientific.
Ed(s): F. Baneyx
2004 article
Functional genomics-based studies of the microbial ecology of hyperthermophilic micro-organisms
Johnson, M. R., Montero, C. I., Conners, S. B., Shockley, K. R., Pysz, M. A., & Kelly, R. M. (2004, April). BIOCHEMICAL SOCIETY TRANSACTIONS, Vol. 32, pp. 188–192.
2004 conference paper
Microbial ecology of hydrothermal biotypes
In R. B. Hoover & A. Y. Rozanov (Eds.), Proceedings: Optical science and technology, SPIE's 48th Annual Meeting (Vol. 5163).
Ed(s): R. Hoover & A. Rozanov
Event: Optical science and technology, SPIE's 48th Annual Meeting at San Diego, CA on August 3-8, 2003
2004 journal article
Population density-dependent regulation of exopolysaccharide formation in the hyperthermophilic bacterium Thermotoga maritima
MOLECULAR MICROBIOLOGY, 55(3), 664–674.
2004 chapter
Pyrococcus furiosus Protease I (PfpI)
In F. Woessner, N. Rawlings, & A. Barrett (Eds.), Handbook of Proteolytic Enzymes (pp. 1393–1395). London: Academic Press Limited.
Ed(s): F. Woessner, N. Rawlings & A. Barrett
2004 chapter
Significance of polysaccharides in microbial physiology and the ecology of hydrothermal vent environments
In W. S. D. Wilcock, E. F. DeLong, D. S. Kelley, J. A. Baross, & S. C. Cary (Eds.), The Subseafloor Biosphere at Mid-Ocean Ridges (pp. 213–226). Washington, DC: American Geophysical Union.
Ed(s): W. Wilcock, E. DeLong, D. Kelley, J. Baross & S. Cary
2004 journal article
Strategic biocatalysis with hyperthermophilic enzymes
Green Chemistry, 6(9), 459.
2004 review
Transcriptional analysis of biofilm formation processes in the anaerobic, hyperthermophilic bacterium Thermotoga maritima
[Review of ]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 70(10), 6098–6112.
2004 journal article
Transcriptional analysis of dynamic heat-shock response by the hyperthermophilic bacterium Thermotoga maritima
EXTREMOPHILES, 8(3), 209–217.
2003 journal article
Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima
JOURNAL OF BIOLOGICAL CHEMISTRY, 278(9), 7540–7552.
2003 journal article
Growth of hyperthermophilic Archaeon Pyrococcus futiosus on chitin involves two family 18 chitinases
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(6), 3119–3128.
2003 journal article
Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(4), 2365–2371.
2003 chapter
Hyperthermophiles
In Encyclopedia of Environmental Microbiology.
2003 journal article
Strategic selection of hyperthermophilic esterases for resolution of 2-arylpropionic esters
BIOTECHNOLOGY PROGRESS, 19(5), 1410–1416.
2002 journal article
Biochemical characterization of Thermotoga maritima endoglucanase Ce174 with and without a carbohydrate binding module (CBM)
FEBS LETTERS, 531(2), 375–380.
2002 patent
Compositions for fracturing subterranean formations
Washington, DC: U.S. Patent and Trademark Office.
2002 journal article
Enantiomeric resolution of 2-aryl propionic esters with hyperthermophilic and mesophilic esterases: Contrasting thermodynamic mechanisms
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 124(28), 8190–8191.
2002 chapter
Enzymatic Modification of Guar Solutions
In Z. Amjad (Ed.), Water Soluble Polymers (pp. 41–49).
Ed(s): Z. Amjad
2002 journal article
Glucose-to-fructose conversion at high temperatures with xylose (glucose) isomerases from Streptomyces murinus and two hyperthermophilic Thermotoga species
BIOTECHNOLOGY AND BIOENGINEERING, 80(2), 185–194.
2002 journal article
Proteolysis in hyperthermophilic microorganisms
Archaea, 1(1), 63–74.
2002 journal article
Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 68(2), 545–554.
2002 report
Saccharification enzymes from hyperthermophilic bacteria and processes for their production
(U.S. Patent No. 6,355,467).
2002 journal article
Structural and catalytic response to temperature and cosolvents of carboxylesterase EST1 from the extremely thermoacidophilic archaeon Sulfolobus solfataricus P1
BIOTECHNOLOGY AND BIOENGINEERING, 80(7), 784–793.
2001 journal article
Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase
EUROPEAN JOURNAL OF BIOCHEMISTRY, 268(23), 6291–6301.
2001 chapter
Carboxylesterase from Sulfolobus solfataricus P1
In Methods in Enzymology (pp. 461–471).
2001 journal article
Carboxylesterase from Sulfolobus solfataricus P1
Hyperthermophilic Enzymes. Part A, 330, 461–471.
2001 patent
Compositions for fracturing subterranean formations
Washington, DC: U.S. Patent and Trademark Office.
2001 journal article
Continuous cultivation of hyperthermophiles
Methods in Enzymology, 330, 31–40.
2001 journal article
Galactomannanases man2 and man5 from Thermotoga species: Growth physiology on galactomannans, gene sequence analysis, and biochemical properties of recombinant enzymes
BIOTECHNOLOGY AND BIOENGINEERING, 75(3), 322–333.
2001 chapter
Homomultimeric protease and putative bacteriocin homolog from Thermotoga maritima
In Methods in Enzymology (pp. 455–460).
2001 journal article
Homomultimeric protease and putative bacteriocin homolog from Thermotoga maritima
Hyperthermophilic Enzymes. Part A, 330, 455–460.
2001 report
Methods and compositions for fracturing subterranean formations
(U.S. Patent No. 6,197,730).
2001 chapter
Protease I from Pyrococcus furiosus
In Methods in Enzymology (pp. 403–413).
2001 journal article
Protease I from Pyrococcus furiosus
Hyperthermophilic Enzymes. Part A, 330, 403–413.
2001 chapter
Xylose isomerases from Thermotoga
In Methods in Enzymology (pp. 215–224).
2001 journal article
Xylose isomerases from Thermotoga
Hyperthermophilic Enzymes. Part A, 330, 215–224.
2001 journal article
alpha-D-galactosidases from Thermotoga species
Hyperthermophilic Enzymes. Part A, 330, 246–260.
2001 journal article
alpha-Glucosidase from Pyrococcus furiosus
Hyperthermophilic Enzymes. Part A, 330, 260–269.
2001 journal article
beta-Endoglucanase from Pyrococcus furiosus
Hyperthermophilic Enzymes. Part A, 330, 346–354.
2001 journal article
beta-Mannanases from Thermotoga species
Hyperthermophilic Enzymes. Part A, 330, 224–238.
2001 journal article
beta-Mannosidase from Thermotoga species
Hyperthermophilic Enzymes. Part A, 330, 238–246.
2001 chapter
α-Glucosidase from Pyrococcus furiosus
In Methods in Enzymology (pp. 260–269).
2001 chapter
αa-D-Galactosidases from Thermotoga species
In Methods in Enzymology (pp. 246–260).
2001 chapter
β-Endoglucanase from Pyrococcus furiosus
In Methods in Enzymology (pp. 346–354).
2001 journal article
β-Mannanases from Thermotoga species
Methods in Enzymology, 330, 224–238.
2001 chapter
β-Mannosidase from Thermotoga species
In Methods in Enzymology (pp. 238–246).
2000 journal article
Characterization of extremely thermostable enzymatic breakers (α-1,6-galactosidase and β-1,4-mannanase) from the hyperthermophilic bacterium Thermotoga neapolitana 5068 for hydrolysis of guar gum
Biotechnology and Bioengineering, 52(2), 332–339.
2000 journal article
Effect of carbon and nitrogen sources on growth dynamics and exopolysaccharide production for the hyperthermophilic archaeon Thermococcus litoralis and bacterium Thermotoga maritima
BIOTECHNOLOGY AND BIOENGINEERING, 69(5), 537–547.
1999 journal article
An endoglucanase, eglA, from the hyperthermophilic archaeon Pyrococcus furiosus hydrolyzes beta-1,4 bonds in mixed-linkage(1 -> 3),(1 -> 4)-beta-D-glucans and cellulose
Journal of Bacteriology, 181(1), 284–290.
1999 article
Biocatalysis and biotransformation - Editorial overview
Kelly, R. M., & Waldmann, H. (1999, February). CURRENT OPINION IN CHEMICAL BIOLOGY, Vol. 3, pp. 9–10.
1999 patent
Compositions for fracturing subterranean formations
Washington, DC: U.S. Patent and Trademark Office.
1999 journal article
Continuous culture as a tool for investigating the growth physiology of heterotrophic hyperthermophiles and extreme thermoacidophiles
Journal of Applied Microbiology, 85(1999), 118S–127.
1999 chapter
Cultivation of hyperthermophilic and extremely thermoacidophilic microorganisms
In A. L. Demain, J. E. Davies, & R. M. Atlas (Eds.), Manual of Industrial Microbiology and Biotechnology (2nd ed.). Washington, D.C.: ASM Press.
Ed(s): A. Demain, J. Davies & R. Atlas
1999 chapter
Enzymes, Extremely Thermostable
In M. C. Flickinger & S. W. Drew (Eds.), Encyclopedia of Bioprocess Technology: Fermentation, Biocatalysis, and Bioseparation (pp. 987–1004).
Ed(s): M. Flickinger & S. Drew
1999 journal article
Influence of polymolecular events on inactivation behavior of xylose isomerase from Thermotoga neapolitana 5068
BIOTECHNOLOGY AND BIOENGINEERING, 62(5), 509–517.
1999 report
Methods and compositions for fracturing subterranean formations
(U.S. Patent No. 5,869,435).
1999 journal article
Relationship between glycosyl hydrolase inventory and growth physiology of the hyperthermophile Pyrococcus furiosus on carbohydrate-based media
Applied and Environmental Microbiology, 65(3), 893–897.
1999 journal article
Rheology and molecular weight changes during enzymatic degradation of a water-soluble polymer
MACROMOLECULES, 32(2), 294–300.
1999 journal article
Synergistic interactions among beta-laminarinase, beta-1,4-glucanase, and beta-glucosidase from the hyperthermophilicarchaeon Pyrococcus furiosus during hydrolysis of beta-1,4-,beta-1,3-, and mixed-linked polysaccharides
Biotechnology and Bioengineering, 66(1), 51–60.
1999 chapter
Thermophilic Microorganisms
In M. C. Flickinger & S. W. Drew (Eds.), Encyclopedia of Bioprocess Technology: Fermentation, Biocatalysis, and Bioseparation (pp. 2536–2552).
Ed(s): M. Flickinger & S. Drew
1998 journal article
Biooxidation capacity of the extremely thermoacidophilic archaeon Metallosphaera sedula under bioenergetic challenge
BIOTECHNOLOGY AND BIOENGINEERING, 58(6), 617–624.
1998 journal article
Finding and using hyperthermophilic enzymes
TRENDS IN BIOTECHNOLOGY, 16(8), 329–332.
1998 review
Glycosyl hydrolases from hyperthermophilic microorganisms
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 9(2), 141–145.
1998 journal article
Homomultimeric protease in the hyperthermophilic bacterium Thermotoga maritima has structural and amino acid sequence homology to bacteriocins in mesophilic bacteria
FEBS LETTERS, 440(3), 393–398.
1998 journal article
Isolation and characterization of Thermococcus barossii, sp. nov., a hyperthermophilic Archaeon isolated from a hydrothermal vent flange formation
SYSTEMATIC AND APPLIED MICROBIOLOGY, 21(1), 40–49.
1998 journal article
Purification and functional characterization of a chaperone from Methanococcus jannaschii
SYSTEMATIC AND APPLIED MICROBIOLOGY, 21(2), 173–178.
1998 chapter
Pyrococcus furiosus Protease I (PfpI)
In F. Woessner, N. Rawlings, & A. Barrett (Eds.), Handbook of Proteolytic Enzymes. London: Academic Press Limited.
Ed(s): F. Woessner, N. Rawlings & A. Barrett
1998 journal article
The family 1 beta-glucosidases from Pyrococcus furiosus and Agrobacterium faecalis share a common catalytic mechanism
BIOCHEMISTRY, 37(49), 17170–17178.
1998 journal article
Thermotoga neapolitana homotetrameric xylose isomerase is expressed as a catalytically active and thermostable dimer in Escherichia coli
Applied and Environmental Microbiology, 64(7), 2357–2360.
1997 journal article
Acquired thermotolerance and stressed-phase growth of the extremely thermoacidophilic Archaeon Metallosphaera sedula in continuous culture
Applied and Environmental Microbiology, 63(6), 2391–2396.
1997 journal article
Hydrogen transfer between methanogens and fermentative heterotrophs in hyperthermophilic cocultures
Biotechnology and Bioengineering, 56(3), 268–278.
1997 journal article
Purification and Characterization of a Proteasome from the Hyperthermophilic Archaeon Pyrococcus furiosus
Applied and Environmental Microbiology, 63(3), 1160–1164.
1997 journal article
Purification and characterization of extremely thermostable beta mannanase, beta mannosidase, and alpha galactosidase from the hyperthermophilic eubacterium Thermotoga neapolitana
Applied and Environmental Microbiology, 63(1), 169–177.
1997 journal article
Purification and characterization of two functional forms of intracellular protease PFPI from the hyperthermophilic Archaeon Pyrococcus furiosus
Applied and Environmental Microbiology, 63(1), 289–295.
1997 patent
Purified Thermococcus barossii DNA polymerase
Washington, DC: U.S. Patent and Trademark Office.
1997 journal article
Viscosity Reduction Of Hydraulic Fracturing Fluids Through Enzymatic Hydrolysis
SPE Journal, 2(02), 204–212.
1996 journal article
Comparison of a β-Glucosidase and a β-Mannosidase from the Hyperthermophilic Archaeon Pyrococcus furiosus
Journal of Biological Chemistry, 271(39), 23749–23755.
1996 journal article
Confessions of a graduate student recruiter
Chemical Engineering Education, 30(4), 262–265.
1996 journal article
Growth Physiology of the Hyperthermophilic Archaeon Thermococcus litoralis: Development of a Sulfur-Free Defined Medium, Characterization of an Exopolysaccharide, and Evidence of Biofilm Formation
Applied and Environmental Microbiology, 62(12), 4478–4485.
1996 chapter
Proteases and Glycosyl Hydrolases from Hyperthermophilic Microorganisms
In Advances in Protein Chemistry (pp. 271–310).
1996 journal article
Sequence, expression in Escherichia coli, and analysis of the gene encoding a novel intracellular protease (PfpI) from the hyperthermophilic archaeon Pyrococcus furiosus
Journal of Bacteriology, 178(9), 2605–2612.
1995 chapter
Biochemical engineering
In S. P. Parker (Ed.), McGraw-Hill Encyclopedia of Science and Technology (8th ed.). New York: McGraw-Hill.
Ed(s): S. Parker
1995 journal article
Bioenergetic Response of the Extreme Thermoacidophile Metallosphaera sedula to Thermal and Nutritional Stresses
Applied and Environmental Microbiology, 61(6), 2314–2321.
1995 chapter
Continuous culture techniques for extremely thermophilic and hyperthermophilic microorganisms
In F. T. Robb (Ed.), Archaea - A Laboratory Manual. Cold Spring Harbor Press.
Ed(s): F. Robb
1995 journal article
Enzymes From Microorganisms in Extreme Environments
Chemical & Engineering News Archive, 73(51), 32–42.
1995 journal article
Extremozymes: Expanding the Limits of Biocatalysis
Nature Biotechnology, 13(7), 662–668.
1995 patent
Methods and compositions for fracturing subterranean formations
Washington, DC: U.S. Patent and Trademark Office.
1995 report
Proteolytic enzymes from hyperthermophilic bacteria and processes for their production
(U.S. Patent No. 5,391,489).
1995 journal article
xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana
Applied and Environmental Microbiology, 61(5), 1867–1875.
1994 journal article
Extremely Thermophilic Microorganisms: Metabolic strategies, genetic characteristics and biotechnological potential of extremely thermophilic microorganisms
Annals of the New York Academy of Sciences, 745(1), 409–425.
1994 journal article
Life in boiling water
Chemistry in Britain, 30(7), 555–558.
1994 review
METABOLISM IN HYPERTHERMOPHILIC MICROORGANISMS
[Review of ]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 66(1-3), 247–270.
1994 journal article
Thermostability and thermoactivity of enzymes from hyperthermophilic archaea
Bioorganic & Medicinal Chemistry, 2(7), 659–667.
1993 chapter
Biocatalysis at extreme temperatures
In G. Georgiou & I. Glowinski (Eds.), Research opportunities in biomolecular engineering : the interface between chemical engineering and biology, December 7-8, 1992, proceedings. Bethesda, MD: NIH Press.
Ed(s): G. Georgiou & I. Glowinski
Event: Research opportunities in biomolecular engineering on December 7-8, 1992
1993 chapter
Biocatalysis: An overview
In G. Georgiou & I. Glowinski (Eds.), Research opportunities in biomolecular engineering : the interface between chemical engineering and biology, December 7-8, 1992, proceedings. Bethesda, MD: NIH Press.
Ed(s): G. Georgiou & I. Glowinski
1993 journal article
Bioenergetics of sulfur reduction in the hyperthermophilic archaeon Pyrococcus furiosus
Journal of Bacteriology, 175(6), 1823–1830.
1993 journal article
Bioenergetics of the metal/sulfur-oxidizing extreme thermoacidophile, Metallosphaera sedula
Fuel, 72(12), 1619–1624.
1993 journal article
Characterization of Amylolytic Enzymes, Having Both α-1,4 and α-1,6 Hydrolytic Activity, from the Thermophilic Archaea Pyrococcus furiosus and Thermococcus litoralis
Applied and Environmental Microbiology, 59(8), 2614–2621.
1993 journal article
Enzymes from high-temperature microorganisms
Current Opinion in Biotechnology, 4(2), 188–192.
1993 journal article
Hydrogenase of the hyperthermophile Pyrococcus furiosus is an elemental sulfur reductase or sulfhydrogenase: evidence for a sulfur-reducing hydrogenase ancestor.
Proceedings of the National Academy of Sciences, 90(11), 5341–5344.
1993 journal article
Influence of tungsten on metabolic patterns in Pyrococcus furiosus, a hyperthermophilic archaeon
Archives of Microbiology, 159(4), 380–385.
1993 report
Method for glucose isomerization using xylose isomerase purified from Thermotoga maritima and Thermotoga neapolitana
(US Patent No. 5,268,280).
1993 report
Novel Isomerization Enzymes
(U.S. Patent No. 5,219,751).
1993 report
Proteolytic Enzymes from Hyperthermophilic Bacteria and Processes for their Production
(US Patent No. 5,242,817).
1993 journal article
Purification and characterization of a highly thermostable glucose isomerase produced by the extremely thermophilic eubacterium,Thermotoga maritima
Biotechnology and Bioengineering, 41(9), 878–886.
1993 journal article
Purification and characterization of a novel amylolytic enzyme from ES 4, a marine hyperthermophilic archaeum
Molecular Marine Biology and Biotechnology, 2(2), 76–87.
1993 journal article
Regulation of ribosomal RNA transcription by growth rate of the hyperthermophilic Archaeon,Pyrococcus furiosus
FEMS Microbiology Letters, 111(2-3), 159–164.
1992 journal article
1992 chapter
Characterization of Enzymes from High-Temperature Bacteria
In ACS Symposium Series (pp. 23–41).
1992 chapter
Metabolic Enzymes from Sulfur-Dependent, Extremely Thermophilic Organisms
In ACS Symposium Series: Vol. 498. Biocatalysis at Extreme Temperatures (pp. 4–22).
1992 journal article
Physiological and Biochemical Characteristics of Pyrococcus furiosus, a Hyperthermophilic Archaebacterium
Annals of the New York Academy of Sciences, 665(1 Biochemical E), 309–319.
1992 journal article
Regulation of Proteolytic Activity in the Hyperthermophile Pyrococcus furiosus
Applied and Environmental Microbiology, 58(4), 1134–1141.
1991 journal article
Chemical and microbiological problems associated with research on the biodesulfurization of coal. A review
Resources, Conservation and Recycling, 5(2-3), 183–193.
1991 journal article
Coal sulphur transformations monitored by hyperthermophilic archaebacteria
Fuel, 70(5), 599–604.
1991 conference paper
Mixed Cultures of High Temperature Bacteria: Prospects for Bioprocessing of Fossil Fuels
Proceedings of the 2nd International Conference on the Biological Processing of Fossil Fuels. Presented at the 2nd International Conference on the Biological Processing of Fossil Fuels.
Event: 2nd International Conference on the Biological Processing of Fossil Fuels
1990 journal article
Characterization of Amylolytic Enzyme Activities Associated with the Hyperthermophilic Archaebacterium Pyrococcus furiosus
Applied and Environmental Microbiology, 56(7), 1985–1991.
1990 journal article
Characterization of sodium dodecyl sulfate-resistant proteolytic activity in the hyperthermophilic archaebacterium Pyrococcus furiosus
Applied and Environmental Microbiology, 56(7), 1992–1998.
1990 journal article
EFFECT OF HETEROCYCLIC AMINE ADDITIVES ON THE ABSORPTION RATES OF CARBONYL SULFIDE AND CARBON DIOXIDE IN AQUEOUS METHYLDIETHANOLAMINE SOLUTIONS
Chemical Engineering Communications, 93(1), 181–191.
1990 journal article
Hydrogen-Sulfur Autotrophy in the Hyperthermophilic Archaebacterium,Pyrodictium brockii
Biotechnology and Genetic Engineering Reviews, 8(1), 345–378.
1990 chapter
Microbiological Processing of Coal
In D. L. Wise (Ed.), Biotechnology Applied to Fossil Fuels. New York: Marcel Dekker.
Ed(s): D. Wise
1990 journal article
Microorganisms at extreme temperatures and pressures: Engineering insights
CHEMTECH, 20(11), 641–648.
1990 journal article
Purification and characterization of an alpha-glucosidase from a hyperthermophilic archaebacterium, Pyrococcus furiosus, exhibiting a temperature optimum of 105 to 115 degrees C
Journal of Bacteriology, 172(7), 3654–3660.
1990 journal article
Role of Polysulfides in Reduction of Elemental Sulfur by the Hyperthermophilic Archaebacterium Pyrococcus furiosus
Applied and Environmental Microbiology, 56(5), 1255–1262.
1990 report
Specific Biocatalysis for Coal Sulfur Speciation and Removal
(Electric Power Research Institute Interim Report No. ER/GS-6624).
1990 journal article
The Hyperthermophilic Archaebacterium, Pyrococcus furiosus.
Annals of the New York Academy of Sciences, 589(1 Biochemical E), 301–314.
1989 conference paper
Bioprocessing of Fossil Fuels Using Hyperthermophilic Archaebacteria
Proceedings of the 14th Annual EPRI Conference on Fuel Science and Conversion. Presented at the 14th Annual EPRI Conference on Fuel Science and Conversion, Palo Alto, CA.
Event: 14th Annual EPRI Conference on Fuel Science and Conversion at Palo Alto, CA
1989 journal article
Bioreactor operation for the production of exotoxin A byPseudomonas aeruginosa
Biotechnology and Bioengineering, 34(9), 1214–1220.
1989 journal article
Characterization of hydrogen-uptake activity in the hyperthermophile Pyrodictium brockii.
Proceedings of the National Academy of Sciences, 86(1), 138–141.
1989 journal article
Cultivation Techniques for Hyperthermophilic Archaebacteria: Continuous Culture of Pyrococcus furiosus at Temperatures near 100�C
Applied and Environmental Microbiology, 55(8), 2086–2088.
1989 journal article
Growth and gas production for hyperthermophilic archaebacterium,Pyrococcus furiosus
Biotechnology and Bioengineering, 34(8), 1050–1057.
1989 journal article
Probing coals for non-pyritic sulphur using sulphur-metabolizing mesophilic and hyperthermophilic bacteria
Fuel, 68(11), 1368–1375.
1988 conference paper
Biological Sulfur Oxidation and Reduction for Coal Sulfur Speciation and Desulfurization
Proceedings of the 13th Annual EPRI Conference on Fuel Science and Conversion. Presented at the 13th Annual EPRI Conference on Fuel Science and Conversion, Santa Clara, CA.
Event: 13th Annual EPRI Conference on Fuel Science and Conversion at Santa Clara, CA
1988 conference paper
Characterization of the H2-Uptake Hydrogenase Activity from the Extreme Thermophile Pyrodictium brockii
Presented at the First International IGT Symposium on Gas, Oil, and Coal Biotechnology, New Orleans, Louisiana.
Event: First International IGT Symposium on Gas, Oil, and Coal Biotechnology, at New Orleans, Louisiana on December 5-7, 1988
1988 journal article
Destruction of Pharmaceutical and Biopharmaceutical Wastes by the Modar Supercritical Water Oxidation Process
Nature Biotechnology, 6(12), 1423–1427.
1988 journal article
Effect of hydrogen and carbon dioxide partial pressures on growth and sulfide production of the extremely thermophilic archaebacterium Pyrodictium brockii
Biotechnology and Bioengineering, 32(4), 438–443.
1988 journal article
Effect of hyperbaric oxygen and carbon dioxide on heterotrophic growth of the extreme thermophileSulfolobus acidocaldarius
Biotechnology and Bioengineering, 31(7), 750–754.
1988 journal article
Engineering considerations for growth of bacteria at temperatures around 100°C
Applied Biochemistry and Biotechnology, 18(1), 53–73.
1988 journal article
Extremely Thermophilic Archaebacteria: Biological and Engineering Considerations
Biotechnology Progress, 4(2), 47–62.
1988 journal article
Influence of hydrodynamics on physical and chemical gas absorption in packed columns
Industrial & Engineering Chemistry Research, 27(4), 636–642.
1988 journal article
Significance of cell fluorescence color of acridine orange-stained Thiobacillus ferrooxidans under epifluoresence microscopy
Science and Technology Letters. Presented at the Biohydrometa Conference, Warwick.
Event: Biohydrometa Conference at Warwick
1987 journal article
Development of a defined medium and two-step culturing method for improved exotoxin A yields from Pseudomonas aeruginosa
Applied and Environmental Microbiology, 53(9), 2013–2020.
1987 journal article
Effect of Culturing Conditions on the Production of Exotoxin A by Pseudomonas aeruginosa
Annals of the New York Academy of Sciences, 506(1 Biochemical E), 663–668.
1987 journal article
Growth of Extremely Thermophilic Archaebacteria under Elevated Hyperbaric Conditions
Annals of the New York Academy of Sciences, 506(1 Biochemical E), 51–66.
1987 journal article
Growth of the extreme thermophileSulfolobus acidocaldarius in a hyperbaric helium bioreactor
Biotechnology and Bioengineering, 29(9), 1066–1074.
1987 journal article
Sulfur Reduction by the Extremely Thermophilic Archaebacterium Pyrodictium occultum
Applied and Environmental Microbiology, 53(7), 1690–1693.
1987 journal article
Use of epifluorescence microscopy for characterizing the activity ofThiobacillus Ferrooxidans on iron pyrite
Biotechnology and Bioengineering, 30(1), 138–146.
1986 journal article
Experimental methods for measuring static liquid holdup in packed columns
AIChE Journal, 32(11), 1920–1923.
1986 journal article
Hollow Fiber Microfiltration Methods for Recovery of Rat Basophilic Leukemia Cells (RBL-2H3) From Tissue Culture Media
Biotechnology Progress, 2(4), 230–233.
1986 journal article
Microbiological Metal Transformations: Biotechnological Applications and Potential
Biotechnology Progress, 2(1), 1–15.
1985 journal article
Conditioning Coal Gas with Refrigerated Methanol in a System of Packed Columns
Chemical Engineering Communications, 34(1-6), 27–35.
1984 journal article
Design of packed, adiabatic absorbers: physical absorption of acid gases in methanol
Industrial & Engineering Chemistry Process Design and Development, 23(1), 102–109.
1983 report
Coal Gasification/Gas Cleanup Test Facility. Volume 4. A Mathematical Model of the Packed Column Acid Gas Absorber
(No. EPA/600/7-83/053). Washington, D.C.: U.S. Environmental Protection Agency.
1982 report
Coal Gasification/Gas Cleanup Test Facility, Vol III: Environmental Assessment of Operation with New Mexico Subbituminous Coal and Chilled Methanol
(No. EPA-600/7-82-054). Washington, D.C.: U.S. Environmental Protection Agency.
1982 report
Coal Gasification/Gas Cleanup Test Facility: Vol II: Environmental Assessment of Operation with Devolatilized Bituminous Coal and Chilled Methanol
(No. EPA-600/7-82-023). Washington, D.C.: U.S. Environmental Protection Agency.
1981 journal article
Physical Absorption of CO2and Sulfur Gases from Coal Gasification: Simulation and Experimental Results
Separation Science and Technology, 16(10), 1389–1414.
1980 report
Coal Gasification/Gas Cleanup Test Facility: Vol I: Description and Operations
(No. EPA-600/7-80-046a). Washington, D.C.: U.S. Environmental Protection Agency.
1980 journal article
How clean gas is made from coal
Environmental Science & Technology, 14(6), 658–666.
1977 journal article
Electrochemical regeneration of NAD+on carbon electrodes
Biotechnology and Bioengineering, 19(8), 1215–1218.
1976 journal article
Steroids and oxygen solubility
Steroids, 28(3), 307–310.
journal article
Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature
Kataeva, I., Foston, M. B., Yang, S. J., Pattathil, S., Biswal, A. K., Poole, F. L., … York, W. S. Energy & Environmental Science, 6(7), 2186–2195.
journal article
Characterization of extremely thermostable enzymatic breakers (alpha-1,6-galactosidase and beta-1,4-mannanase) from the hyperthermophilic bacterium Thermotoga neapolitana 5068 for hydrolysis of guar gum
McCutchen, C. M., Duffaud, G. D., Leduc, P., Petersen, A. R. H., Tayal, A., Khan, S. A., & Kelly, R. M. Biotechnology and Bioengineering, 52(2), 332–339.
journal article
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria caldicellulosiruptor hydrothermalis, caldicellulosiruptor kristjanssonii, caldicellulosiruptor kronotskyensis, caldicellulosiruptor owensensis, and caldic
Blumer-Schuette, S. E., Ozdemir, I., Mistry, D., Lucas, S., Lapidus, A., Cheng, J. F., … Walston-Davenport, K. Journal of Bacteriology, 193(6), 1483–1484.
journal article
Lignocellulosic biomass deconstruction by the extremely thermophilic genus caldicellulosiruptor
Conway, J. M., Zurawski, J. V., Lee, L. L., Blumer-Schuette, S. E., & Kelly, R. M. Thermophilic Microorganisms, 91–119.
journal article
Viscosity reduction of hydraulic fracturing fluids through enzymatic hydrolysis
Tayal, A., Kelly, R. M., & Khan, S. A. Society of Petroleum Engineers Journal, 2(2), 204–212.
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