2024 journal article
Beyond low lignin: Identifying the primary barrier to plant biomass conversion by fermentative bacteria
SCIENCE ADVANCES, 10(42).
2024 journal article
Chalcopyrite bioleaching efficacy by extremely thermoacidophilic archaea leverages balanced iron and sulfur biooxidation
BIORESOURCE TECHNOLOGY, 408.
2024 article
Complete genome sequence for the extremely thermophilic bacterium Anaerocellum danielii (DSM:8977)
Manesh, M. J. H., Bing, R. G., Willard, D. J., Adams, M. W. W., & Kelly, R. M. (2024, January 24). (K. M. Stedman, Ed.). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 1.
Ed(s): K. Stedman
2024 article
Complete genome sequence for the thermoacidophilic archaeon <i>Metallosphaera sedula</i> (DSM:5348)
Manesh, M. J. H., Bing, R. G., Willard, D. J., & Kelly, R. M. (2024, February 8). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.
2024 journal article
Engineering ethanologenicity into the extremely thermophilic bacterium Anaerocellum<i> (</i> f. Caldicellulosiriuptor) bescii
METABOLIC ENGINEERING, 86, 99–114.
2024 review
Extremely thermoacidophilic archaea for metal bioleaching:<i> What</i><i> do</i><i> their</i> genomes tell Us?
[Review of ]. BIORESOURCE TECHNOLOGY, 391.
2024 article
Metabolic engineering of <i>Caldicellulosiruptor bescii</i> for 2,3-butanediol production from unpretreated lignocellulosic biomass and metabolic strategies for improving yields and titers
Tanwee, T. N. N., Lipscomb, G. L., Vailionis, J. L., Zhang, K., Bing, R. G., Hailey C. O'Quinn, … Adams, M. W. W. (2023, December 22). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 12.
2024 article
Phenotype-driven assessment of the ancestral trajectory of sulfur biooxidation in the thermoacidophilic archaea Sulfolobaceae
Willard, D. J., Manesh, M. J. H., Bing, R. G., Alexander, B. H., & Kelly, R. M. (2024, July 2). MBIO, Vol. 7.
2023 article
Complete Genome Sequences of Caldicellulosiruptor acetigenus DSM 7040, Caldicellulosiruptor morganii DSM 8990 (RT8.B8), and Caldicellulosiruptor naganoensis DSM 8991 (NA10)
Bing, R. G. G., Willard, D. J. J., Manesh, M. J. H., Laemthong, T., Crosby, J. R. R., Adams, M. W. W., & Kelly, R. M. M. (2023, February 1). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.
2023 journal article
Complete Genome Sequences of Two Thermophilic Indigenous Bacteria Isolated from Wheat Straw, Thermoclostridium stercorarium subsp. Strain RKWS1 and Thermoanaerobacter sp. Strain RKWS2
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 12(3).
2023 article
Complete genome sequence for the thermoacidophilic archaeon <i>Sulfuracidifex</i> (f<i>. Sulfolobus</i>) <i>metallicus</i> DSM 6482
Willard, D. J., Manesh, M. J. H., Bing, R. G., & Kelly, R. M. (2023, December 6). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 12.
2023 article
Innovating Life Sciences Laboratory Training: Molecular Biology Laboratory Education Modules (MBLEMs) as a Model for Advanced Training at Diverse Institutions
JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 299, pp. S260–S260.
2023 article
Interplay between transcriptional regulators and VapBC toxin-antitoxin loci during thermal stress response in extremely thermoacidophilic archaea
Cooper, C. R., Lewis, A. M., Notey, J. S., Mukherjee, A., Willard, D. J., Blum, P. H., & Kelly, R. M. (2023, February 24). ENVIRONMENTAL MICROBIOLOGY, Vol. 2.
2023 article
Manipulating Fermentation Pathways in the Hyperthermophilic Archaeon Pyrococcus furiosus for Ethanol Production up to 95 degrees C Driven by Carbon Monoxide Oxidation
Lipscomb, G. L., Crowley, A. T., Nguyen, D. M. N., Keller, M. W., Hailey C. O'Quinn, Tanwee, T. N. N., … Adams, M. W. W. (2023, May 10). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 5.
2023 journal article
Multiplex CRISPR editing of wood for sustainable fiber production
SCIENCE, 381(6654), 216-+.
2023 article
Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus
Vailionis, J. L., Zhao, W., Zhang, K., Rodionov, D. A., Lipscomb, G. L., Tanwee, T. N. N., … Zhang, Y. (2023, June 8). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 6.
2023 journal article
Role of cell-substrate association during plant biomass solubilization by the extreme thermophile Caldicellulosiruptor bescii
EXTREMOPHILES, 27(1).
2023 article
Stay or Go: Sulfolobales Biofilm Dispersal Is Dependent on a Bifunctional VapB Antitoxin
Lewis, A. M., Willard, D. J., Manesh, M. J. H. J., Sivabalasarma, S., Albers, S.-V., & Kelly, R. M. (2023, April 10). MBIO, Vol. 4.
2023 journal article
Whither the genus Caldicellulosiruptor and the order Thermoanaerobacterales: phylogeny, taxonomy, ecology, and phenotype
FRONTIERS IN MICROBIOLOGY, 14.
2022 journal article
<p>Plant biomass fermentation by the extreme thermophile Caldicellulosiruptor bescii for co-production of green hydrogen and acetone: Technoeconomic analysis</p>
BIORESOURCE TECHNOLOGY, 348.
2022 article
Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization
Crosby, J. R., Laemthong, T., Bing, R. G., Zhang, K., Tanwee, T. N. N., Lipscomb, G. L., … Kelly, R. M. (2022, October 11). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 10.
2022 article
Engineering Caldicellulosiruptor bescii with Surface Layer Homology Domain-Linked Glycoside Hydrolases Improves Plant Biomass Solubilization
Laemthong, T., Bing, R. G., Crosby, J. R., Adams, M. W. W., & Kelly, R. M. (2022, September 28). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 9.
2022 journal article
Fermentative conversion of unpretreated plant biomass: A thermophilic threshold for indigenous microbial growth
BIORESOURCE TECHNOLOGY, 367.
2021 chapter
Enzymes from extremely thermophilic bacteria and archaea: Current status and future prospects
In N. A. Arora, S. Agnihotri, & J. Mishra (Eds.), Extremozymes and their Industrial Applications. St. Louis, MO: Elsevier Academic Press.
Ed(s): N. Arora, S. Agnihotri & J. Mishra
2021 article
Fox Cluster determinants for iron biooxidation in the extremely thermoacidophilic Sulfolobaceae
Counts, J. A., Vitko, N. P., & Kelly, R. M. (2021, August 30). ENVIRONMENTAL MICROBIOLOGY, Vol. 8.
2021 journal article
Genome-Scale Metabolic Model of Caldicellulosiruptor bescii Reveals Optimal Metabolic Engineering Strategies for Bio-based Chemical Production
MSystems, 6(3).
Ed(s): Z. Summers
2021 journal article
Integrating Bioinformatics Tools into Inquiry-based Molecular Biology Laboratory Education Modules
Frontiers in Education, 6.
Contributors: C. Goller n , M. Srougi n , S. Chen n , L. Schenkman n & n
2021 journal article
Intersection of Biotic and Abiotic Sulfur Chemistry Supporting Extreme Microbial Life in Hot Acid
JOURNAL OF PHYSICAL CHEMISTRY B, 125(20), 5243–5257.
2021 journal article
Intersection of Biotic and Abiotic Sulfur Chemistry Supporting Extreme Microbial Life in Hot Acid
Journal of Physical Chemistry B, 125(20), 5243–5257.
2021 journal article
Thermophilic microbial deconstruction and conversion of natural and transgenic lignocellulose
Environmental Microbiology Reports, 13(3), 272–293.
2021 journal article
Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii
MSystems, 6(3).
Ed(s): Z. Summers
2020 journal article
A genomic catalog of Earth’s microbiomes
Nature Biotechnology, 39, 499–509.
2020 journal article
Engineering the cellulolytic extreme thermophile Caldicellulosiruptor bescii to reduce carboxylic acids to alcohols using plant biomass as the energy source
Journal of Industrial Microbiology and Biotechnology, 47(8), 585–597.
2020 journal article
Genome Sequences of Five Type Strain Members of the Archaeal Family Sulfolobaceae, Acidianus ambivalens, Acidianus infernus, Stygiolobus azoricus, Sulfuracidifex metallicus, and Sulfurisphaera ohwakuensis
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(11).
2020 journal article
Life in hot acid: a genome‐based reassessment of the archaeal order Sulfolobales
Environmental Microbiology, 23(7), 3568–3584.
2020 journal article
Metabolically engineeredCaldicellulosiruptor besciias a platform for producing acetone and hydrogen from lignocellulose
BIOTECHNOLOGY AND BIOENGINEERING, 117(12), 3799–3808.
2020 journal article
Modification of the glycolytic pathway in Pyrococcus furiosus and the implications for metabolic engineering
EXTREMOPHILES, 24(4), 511–518.
2020 journal article
The biology of thermoacidophilic archaea from the order Sulfolobales
FEMS Microbiology Reviews, 45(4).
2020 journal article
Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar
BIOTECHNOLOGY FOR BIOFUELS, 13(1).
2019 journal article
Determinants of sulphur chemolithoautotrophy in the extremely thermoacidophilic Sulfolobales
ENVIRONMENTAL MICROBIOLOGY, 21(10), 3696–3710.
2019 journal article
Extreme thermophiles as emerging metabolic engineering platforms
Current Opinion in Biotechnology, 59, 55–64.
2019 journal article
Lignocellulose solubilization and conversion by extremely thermophilic Caldicellulosiruptor bescii improves by maintaining metabolic activity
BIOTECHNOLOGY AND BIOENGINEERING, 116(8), 1901–1908.
2019 journal article
Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii
NATURE COMMUNICATIONS, 10(1).
Contributors: C. Straub n, P. Khatibi n, J. Wang n , J. Conway n, A. Williams-Rhaesa *, I. Peszlen n , V. Chiang n, M. Adams *, n
2019 article
The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'
Lee, L. L., Crosby, J. R., Rubinstein, G. M., Laemthong, T., Bing, R. G., Straub, C. T., … Kelly, R. M. (2020, January). EXTREMOPHILES, Vol. 24, pp. 1–15.
2019 journal article
The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis
JOURNAL OF BIOLOGICAL CHEMISTRY, 294(25), 9995–10005.
2018 journal article
A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum
BIOTECHNOLOGY AND BIOENGINEERING, 115(12), 2951–2961.
2018 review
Biotechnology of extremely thermophilic archaea
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 42(5), 543–578.
2018 journal article
Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(3).
2018 journal article
Complete Genome Sequences of Extremely Thermoacidophilic Metal-Mobilizing Type Strain Members of the Archaeal Family Sulfolobaceae, Acidianus brierleyi DSM-1651, Acidianus sulfidivorans DSM-18786, and Metallosphaera hakonensis DSM-7519
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7(2).
2018 journal article
Engineering redox-balanced ethanol production in the cellulolytic and extremely thermophilic bacterium, Caldicellulosiruptor bescii
Metabolic Engineering Communications, 7, e00073.
2018 journal article
Extremely Thermoacidophilic Metallosphaera Species Mediate Mobilization and Oxidation of Vanadium and Molybdenum Oxides
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(5).
2018 journal article
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
Applied and Environmental Microbiology, 84(9), e02694–17.
Ed(s): I. Cann
2018 journal article
Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii
EXTREMOPHILES, 22(4), 629–638.
2018 journal article
Novel multidomain, multifunctional glycoside hydrolases from highly lignocellulolytic Caldicellulosiruptor species
AICHE JOURNAL, 64(12), 4218–4228.
2018 journal article
Parsing in vivo and in vitro contributions to microcrystalline cellulose hydrolysis by multidomain glycoside hydrolases in the Caldicellulosiruptor bescii secretome
BIOTECHNOLOGY AND BIOENGINEERING, 115(10), 2426–2440.
2018 journal article
Secretion and fusion of biogeochemically active archaeal membrane vesicles
GEOBIOLOGY, 16(6), 659–673.
2018 journal article
Sequential processing with fermentative Caldicellulosiruptor kronotskyensis and chemolithoautotrophic Cupriavidus necator for converting rice straw and CO2 to polyhydroxybutyrate
BIOTECHNOLOGY AND BIOENGINEERING, 115(6), 1624–1629.
2018 journal article
Simultaneous biosynthesis of (R)-acetoin and ethylene glycol from D-xylose through in vitro metabolic engineering
Metabolic Engineering Communications, 7, e00074.
2018 journal article
The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate
BIOTECHNOLOGY FOR BIOFUELS, 11.
2018 journal article
Uncoupling Fermentative Synthesis of Molecular Hydrogen from Biomass Formation in Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(17).
2017 journal article
Bioavailability of Carbohydrate Content in Natural and Transgenic Switchgrasses for the Extreme Thermophile Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(17).
2017 journal article
C aldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose
Microbial Biotechnology, 10(6), 1546–1557.
2017 journal article
Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island
Extremophiles, 21(4), 733–742.
2017 journal article
Ethanol production by the hyperthermophilic archaeon Pyrococcus furiosus by expression of bacterial bifunctional alcohol dehydrogenases
Microbial Biotechnology, 10(6), 1535–1545.
2017 review
Extremely thermophilic energy metabolisms: biotechnological prospects
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 45, 104–112.
2017 journal article
Functional Analysis of the Glucan Degradation Locus in Caldicellulosiruptor bescii Reveals Essential Roles of Component Glycoside Hydrolases in Plant Biomass Deconstruction
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(24).
2017 journal article
Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(14).
2017 journal article
Impact of growth mode, phase, and rate on the metabolic state of the extremely thermophilic archaeon Pyrococcus furiosus
BIOTECHNOLOGY AND BIOENGINEERING, 114(12), 2947–2954.
2017 review
Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms
[Review of ]. WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 9(3).
2017 report
Sequestration of CO2 with H2 into useful products
(US Patent No. 9,587,256).
2017 journal article
Two Distinct alpha-L-Arabinofuranosidases in Caldicellulosiruptor Species Drive Degradation of Arabinose-Based Polysaccharides
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(13).
2017 journal article
VapC toxins drive cellular dormancy under uranium stress for the extreme thermoacidophile Metallosphaera prunae
ENVIRONMENTAL MICROBIOLOGY, 19(7), 2831–2842.
2016 journal article
A Highly Thermostable Kanamycin Resistance Marker Expands the Tool Kit for Genetic Manipulation of Caldicellulosiruptor bescii
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(14), 4421–4428.
2016 journal article
Ancillary contributions of heterologous biotin protein ligase and carbonic anhydrase for CO2 incorporation into 3-hydroxypropionate by metabolically engineered Pyrococcus furiosus
Biotechnology and Bioengineering, 113(12), 2652–2660.
2016 chapter
Extreme Thermophiles as Metabolic Engineering Platforms: Strategies and Current Perspective
In C. Wittmann & J. C. Liao (Eds.), Industrial Biotechnology: Microorganisma (Vol. 1, pp. 505–580).
Ed(s): C. Wittmann & J. Liao
2016 journal article
Heterologous Production of an Energy-Conserving Carbon Monoxide Dehydrogenase Complex in the Hyperthermophile Pyrococcus furiosus
FRONTIERS IN MICROBIOLOGY, 7.
2016 journal article
Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species
JOURNAL OF BIOLOGICAL CHEMISTRY, 291(13), 6732–6747.
2016 journal article
Reaction kinetic analysis of the 3-hydroxypropionate/4-hydroxybutyrate CO2 fixation cycle in extremely thermoacidophilic archaea
METABOLIC ENGINEERING, 38, 446–463.
2016 article
The renaissance of life near the boiling point - at last, genetics and metabolic engineering
Adams, M. W. W., & Kelly, R. M. (2017, January). MICROBIAL BIOTECHNOLOGY, Vol. 10, pp. 37–39.
2016 journal article
Transcriptomes of the Extremely Thermoacidophilic Archaeon Metallosphaera sedula Exposed to Metal "Shock" Reveal Generic and Specific Metal Responses
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(15), 4613–4627.
2015 journal article
A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7339–7347.
2015 journal article
Alcohol Selectivity in a Synthetic Thermophilic n-Butanol Pathway Is Driven by Biocatalytic and Thermostability Characteristics of Constituent Enzymes
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7187–7200.
2015 journal article
Bioprocessing analysis of Pyrococcus furiosus strains engineered for CO2-based 3-hydroxypropionate production
BIOTECHNOLOGY AND BIOENGINEERING, 112(8), 1533–1543.
2015 journal article
Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(20), 7159–7170.
2015 journal article
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “ Thermoanaerobacter cellulolyticus ”
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “ Thermoanaerobacter cellulolyticus .” Genome Announcements, 3(3).
2015 journal article
Discrete and Structurally Unique Proteins (Tapirins) Mediate Attachment of Extremely Thermophilic Caldicellulosiruptor Species to Cellulose
JOURNAL OF BIOLOGICAL CHEMISTRY, 290(17), 10645–10656.
2015 review
Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals
[Review of ]. FRONTIERS IN MICROBIOLOGY, 6.
2015 report
Genetically engineered microbes and methods for converting organic acid to alcohols
(US Patent Application No. 14/670,601).
2015 journal article
Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins
PROTEOMICS, 15(15), 2678–2690.
Contributors: J. Schilling n, A. Nepomuceno n, A. Planchart n , J. Yoder n , n , D. Muddiman n , H. Daniels n, N. Hiramatsu*, B. Reading n
2015 journal article
Temperature-dependent acetoin production by Pyrococcus furiosus is catalyzed by a biosynthetic acetolactate synthase and its deletion improves ethanol production
METABOLIC ENGINEERING, 34, 71–79.
2015 review
The Confluence of Heavy Metal Biooxidation and Heavy Metal Resistance: Implications for Bioleaching by Extreme Thermoacidophiles
[Review of ]. MINERALS, 5(3), 397–451.
2014 journal article
A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe
METABOLIC ENGINEERING, 27, 101–106.
2014 journal article
A mutant ('lab strain') of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology
EXTREMOPHILES, 19(2), 269–281.
2014 journal article
Conversion of 4-Hydroxybutyrate to Acetyl Coenzyme A and Its Anapleurosis in the Metallosphaera sedula 3-Hydroxypropionate/4-Hydroxybutyrate Carbon Fixation Pathway
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 80(8), 2536–2545.
2014 journal article
Cross-linked Polymer Nanofibers for Hyperthermophilic Enzyme Immobilization: Approaches to Improve Enzyme Performance
ACS APPLIED MATERIALS & INTERFACES, 6(15), 11899–11906.
2014 journal article
Deletion of acetyl-CoA synthetases I and II increases production of 3-hydroxypropionate by the metabolically-engineered hyperthermophile Pyrococcus furiosus
METABOLIC ENGINEERING, 22, 83–88.
2014 chapter
Functional Genomics
In R. Cavicchioli (Ed.), Archaea: Molecular and Cellular Biology (pp. 434–462).
Ed(s): R. Cavicchioli
2014 journal article
Nanofibrous membranes for single-step immobilization of hyperthermophilic enzymes
JOURNAL OF MEMBRANE SCIENCE, 472, 251–260.
2014 journal article
Production of lignofuels and electrofuels by extremely thermophilic microbes
Biofuels, 5(5), 499–515.
2014 journal article
Role of an Archaeal PitA Transporter in the Copper and Arsenic Resistance of Metallosphaera sedula, an Extreme Thermoacidophile
JOURNAL OF BACTERIOLOGY, 196(20), 3562–3570.
2014 journal article
Single gene insertion drives bioalcohol production by a thermophilic archaeon
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111(49), 17618–17623.
2014 chapter
The Extremely Thermophilic Genus Caldicellulosiruptor: Physiological and Genomic Characteristics for Complex Carbohydrate Conversion to Molecular Hydrogen
In Microbial BioEnergy: Hydrogen Production (pp. 177–195).
2014 chapter
The Order Thermococcales and the Family Thermococcaceae
In The Prokaryotes (pp. 363–383).
2013 review
Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 24(3), 376–384.
2013 journal article
Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature
Energy & Environmental Science, 6(7), 2186.
2013 journal article
Engineering Hydrogen Gas Production from Formate in a Hyperthermophile by Heterologous Production of an 18-Subunit Membrane-bound Complex
JOURNAL OF BIOLOGICAL CHEMISTRY, 289(5), 2873–2879.
2013 journal article
Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 110(15), 5840–5845.
2013 journal article
Stationary Phase and Nutrient Levels Trigger Transcription of a Genomic Locus Containing a Novel Peptide (TM1316) in the Hyperthermophilic Bacterium Thermotoga maritima
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(21), 6637–6646.
2013 review
Thermophilic lignocellulose deconstruction
[Review of ]. FEMS MICROBIOLOGY REVIEWS, 38(3), 393–448.
2012 journal article
A thermophile under pressure: Transcriptional analysis of the response of Caldicellulosiruptor saccharolyticus to different H-2 partial pressures
INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, 38(4), 1837–1849.
2012 journal article
Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass
JOURNAL OF BACTERIOLOGY, 194(15), 4015–4028.
2012 journal article
Epimerase (Msed_0639) and Mutase (Msed_0638 and Msed_2055) Convert (S)-Methylmalonyl-Coenzyme A (CoA) to Succinyl-CoA in the Metallosphaera sedula 3-Hydroxypropionate/4-Hydroxybutyrate Cycle
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78(17), 6194–6202.
2012 journal article
Extreme thermophiles: moving beyond single-enzyme biocatalysis
Current Opinion in Chemical Engineering, 1(4), 363–372.
2012 journal article
Hyperthermophilic Thermotoga Species Differ with Respect to Specific Carbohydrate Transporters and Glycoside Hydrolases
Applied and Environmental Microbiology, 78(6), 1978–1986.
2012 journal article
Role of 4-Hydroxybutyrate-CoA Synthetase in the CO2 Fixation Cycle in Thermoacidophilic Archaea
JOURNAL OF BIOLOGICAL CHEMISTRY, 288(6), 4012–4022.
2012 journal article
Uranium extremophily is an adaptive, rather than intrinsic, feature for extremely thermoacidophilic Metallosphaera species
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(41), 16702–16707.
2011 journal article
Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis , Caldicellulosiruptor kristjanssonii , Caldicellulosiruptor kronotskyensis , Caldicellulosiruptor owensensis , and Caldicellulosiruptor lactoaceticus
Journal of Bacteriology, 193(6), 1483–1484.
2011 journal article
Extremely Thermophilic Routes to Microbial Electrofuels
ACS CATALYSIS, 1(9), 1043–1050.
2011 journal article
Glycoside Hydrolase Inventory Drives Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
BIOTECHNOLOGY AND BIOENGINEERING, 108(7), 1559–1569.
2011 journal article
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725
NUCLEIC ACIDS RESEARCH, 39(8), 3240–3254.
2011 journal article
S-Layer Homology Domain Proteins Csac_0678 and Csac_2722 Are Implicated in Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78(3), 768–777.
2011 journal article
Starch Self-Processing in Transgenic Sweet Potato Roots Expressing a Hyperthermophilic alpha-Amylase
BIOTECHNOLOGY PROGRESS, 27(2), 351–359.
2011 journal article
VapC6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote Sulfolobus solfataricus
RNA, 17(7), 1381–1392.
2010 journal article
A novel alpha-d-galactosynthase from Thermotoga maritima converts beta-d-galactopyranosyl azide to alpha-galacto-oligosaccharides
GLYCOBIOLOGY, 21(4), 448–456.
2010 chapter
Enzymes, Extremely Thermophilic
In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology.
Ed(s): M. Flickinger
2010 chapter
Extremely thermophilic microorganisms
In M. C. Flickinger (Ed.), Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology (2nd ed., Vol. 5, pp. 3481–3499). NY: John Wiley and Sons.
Ed(s): M. Flickinger
2010 entry reference
Extremophiles
(I. T. Horváth, Ed.).
Ed(s): I. Horváth
2010 journal article
Impact of Molecular Hydrogen on Chalcopyrite Bioleaching by the Extremely Thermoacidophilic Archaeon Metallosphaera sedula
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(8), 2668–2672.
2010 journal article
N-terminal Fusion of a Hyperthermophilic Chitin-Binding Domain to Xylose Isomerase from Thermotoga neapolitana Enhances Kinetics and Thermostability of Both Free and Immobilized Enzymes
BIOTECHNOLOGY PROGRESS, 26(4), 993–1000.
2010 journal article
Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 377–389.
2010 article
Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2 (vol 398, pg 377, 2010)
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1837–1837.
2010 journal article
Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 398(1), 391–404.
2010 article
Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting (vol 398, pg 391, 2010)
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, October). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 398, pp. 1839–1839.
2010 journal article
Phylogenetic, Microbiological, and Glycoside Hydrolase Diversities within the Extremely Thermophilic, Plant Biomass-Degrading Genus Caldicellulosiruptor
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(24), 8084–8092.
2010 journal article
The genus Thermotoga: recent developments
ENVIRONMENTAL TECHNOLOGY, 31(10), 1169–1181.
2009 journal article
Carbohydrate Utilization Patterns for the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus Reveal Broad Growth Substrate Preferences
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 75(24), 7718–7724.
2009 journal article
Integrating modern biology into the ChE DNA through a campus-wide core laboratory education program
Chemical Engineering Education, 43(4), 257–264.
2009 journal article
Physiological Versatility of the Extremely Thermoacidophilic Archaeon Metallosphaera sedula Supported by Transcriptomic Analysis of Heterotrophic, Autotrophic, and Mixotrophic Growth
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(3), 931–935.
2009 journal article
Plant cell calcium-rich environment enhances thermostability of recombinantly produced α-amylase from the hyperthermophilic bacterium Thermotoga maritime
Biotechnology and Bioengineering, 104(5), 947–956.
2009 journal article
Role of vapBC toxin–antitoxin loci in the thermal stress response of Sulfolobus solfataricus
Biochemical Society Transactions, 37(1), 123–126.
2009 journal article
Temperature, not LuxS, mediates AI-2 formation in hydrothermal habitats
FEMS MICROBIOLOGY ECOLOGY, 68(2), 173–181.