Ross Whetten Callister, A. N., Jimenez-Madrigal, J. P., Whetten, R. W., & Murillo, O. (2024). Genomic predictions and candidate single nucleotide polymorphisms for growth, form, and wood properties of teak clones. SILVAE GENETICA, 73(1), 13–23. https://doi.org/10.2478/sg-2024-0002 Pais, A., Ristaino, J., Whetten, R., & Xiang, Q.-Y. (2024). Metagenomic study reveals hidden relationships among fungal diversity, variation of plant disease, and genetic distance in Cornus florida (Cornaceae). FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1282188 Walker, T. D., Maynor, J. A., Isik, F., Heine, A. J., Whetten, R. W., Payn, K. G., … McKeand, S. E. (2024). Stem Defect Rates and Ice Storm Damage for Families of Pinus taeda from Coastal and Piedmont Provenances Planted on a North Carolina Piedmont Site. Forest Science. https://doi.org/10.1093/forsci/fxae016 Festa, A. R., & Whetten, R. (2023, April 28). Analysis of Gene Expression Differences Between Eastern and Western Loblolly Pine Seed Sources. https://doi.org/10.1101/2023.04.24.538124 Whetten, R. W., Jayawickrama, K. J. S., Cumbie, W. P., & Martins, G. S. (2023). Genomic Tools in Applied Tree Breeding Programs: Factors to Consider. FORESTS, 14(2). https://doi.org/10.3390/f14020169 Ousmael, K., Whetten, R. W., Xu, J., Nielsen, U. B., Lamour, K., & Hansen, O. K. (2023). Identification and high-throughput genotyping of single nucleotide polymorphism markers in a non-model conifer (Abies nordmanniana (Steven) Spach). SCIENTIFIC REPORTS, 13(1). https://doi.org/10.1038/s41598-023-49462-x Gatjens-Boniche, O., Jimenez-Madrigal, J. P., Whetten, R. W., Valenzuela-Diaz, S., Aleman-Gutierrez, A., Hanson, P. E., & Pinto-Tomas, A. A. (2023). Microbiome and plant cell transformation trigger insect gall induction in cassava. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1237966 Festa, A. R., & Whetten, R. (2023, March 24). Transcriptomic Prediction of Breeding Values in Loblolly Pine. https://doi.org/10.1101/2023.03.21.533546 Kloppe, T., Whetten, R. B., Kim, S. B., Powell, O. R., Lück, S., Douchkov, D., … Cowger, C. (2023). Two pathogen loci determine Blumeria graminis. New Phytologist, 238(4), 1546–1561. https://doi.org/10.1111/nph.18809 Jackson, C., Christie, N., Reynolds, S. M., Marais, G. C., Tii‐kuzu, Y., Caballero, M., … Myburg, A. A. (2021). A genome‐wide SNP genotyping resource for tropical pine tree species. Molecular Ecology Resources, 22(2), 695–710. https://doi.org/10.1111/1755-0998.13484 Matallana-Ramirez, L. P., Whetten, R. W., Sanchez, G. M., & Payn, K. G. (2021). [Review of Breeding for Climate Change Resilience: A Case Study of Loblolly Pine (Pinus taeda L.) in North America]. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.606908 Maynor, J. A., Isik, F., Walker, T. D., Whetten, R. W., Heine, A. J., Payn, K. G., & McKeand, S. E. (2021). Provenance and Family Variation in Biomass Potential of Loblolly Pine in the Piedmont of North Carolina. FOREST SCIENCE, 67(3), 312–320. https://doi.org/10.1093/forsci/fxaa056 Festa, A. R., & Whetten, R. (2021, December 1). Simulation of Pedigree vs. fully-informative marker based relationships matrices in a Loblolly Pine breeding population. https://doi.org/10.1101/2021.11.30.468863 Caballero, M., Lauer, E., Bennett, J., Zaman, S., McEvoy, S., Acosta, J., … Isik, F. (2021). Toward genomic selection in Pinus taeda: Integrating resources to support array design in a complex conifer genome. APPLICATIONS IN PLANT SCIENCES, 9(6). https://doi.org/10.1002/aps3.11439 Kurt, Y., Matallana-Ramirez, L., Kohlway, W., Whetten, R., & Frampton, J. (2020). A fast, flexible and inexpensive protocol for DNA and RNA extraction for forest trees. FOREST SYSTEMS, 29(2). https://doi.org/10.5424/fs/2020292-16730 Hansen, O. K., Lamour, K., Whetten, R., Xu, J., Cuenca, A., Islam, M. S., & Nielsen, U. B. (2020). Ad hoc breeding of a genetically depauperate landrace of noble fir (Abies procera Rehder) using SNP genotyping via high-throughput targeted sequencing. Tree Genetics & Genomes, 16(5). https://doi.org/10.1007/s11295-020-01460-0 Shalizi, M. N., Gezan, S. A., McKeand, S. E., Sherrill, J. R., Cumbie, W. P., Whetten, R. W., & Isik, F. (2020). Correspondence between Breeding Values of the Same Pinus taeda L. Genotypes from Clonal Trials and Half-Sib Seedling Progeny Trials. Forest Science, 66(5), 600–611. https://doi.org/10.1093/forsci/fxaa016 Pais, A. L., Whetten, R. W., & Xiang, Q. Y. (2020). Population structure, landscape genomics, and genetic signatures of adaptation to exotic disease pressure in Cornus florida L.—Insights from GWAS and GBS data. Journal of Systematics and Evolution. https://doi.org/10.1111/jse.12592 Čepl, J., Stejskal, J., Lhotáková, Z., Holá, D., Korecký, J., Lstibůrek, M., … Albrechtová, J. (2018). 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Journal of the American Statistical Association, 112(519), 909–920. https://doi.org/10.1080/01621459.2017.1292179 Kohlway, W. H., Whetten, R. W., Benson, D. M., & Frampton, J. (2017). Response of Turkish and Trojan fir to Phytophthora cinnamomi and P. cryptogea. Scandinavian Journal of Forest Research, 32(5), 406–411. https://doi.org/10.1080/02827581.2017.1280076 Farjat, A. E., Chamblee, A. K., Isik, F., Whetten, R. W., & McKeand, S. E. (2017). Variation among Loblolly Pine Seed Sources across Diverse Environments in the Southeastern United States. Forest Science, 63(1), 39–48. https://doi.org/10.5849/forsci.15-107 Pais, A. L., Whetten, R. W., & Xiang, Q.-Y. J. (2016). Ecological genomics of local adaptation in Cornus florida L. by genotyping by sequencing. Ecology and Evolution, 7(1), 441–465. https://doi.org/10.1002/ece3.2623 Čepl, J., Holá, D., Stejskal, J., Korecký, J., Kočová, M., Lhotáková, Z., … Lstibůrek, M. (2016). Genetic variability and heritability of chlorophyll a fluorescence parameters in Scots pine (Pinus sylvestris L.). Tree Physiology, 36(7), 883–895. https://doi.org/10.1093/treephys/tpw028 Xiong, J. S., McKeand, S. E., Isik, F., Wegrzyn, J., Neale, D. B., Zeng, Z.-B., … Whetten, R. W. (2016). Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine. BMC Genetics, 17(1). https://doi.org/10.1186/s12863-016-0446-6 Farjat, A. E., Isik, F., Reich, B. J., Whetten, R. W., & McKeand, S. E. (2015). Modeling Climate Change Effects on the Height Growth of Loblolly Pine. Forest Science, 61(4), 703–715. https://doi.org/10.5849/forsci.14-075 Qi, Z.-C., Yu, Y., Liu, X., Pais, A., Ranney, T., Whetten, R., & Xiang, Q.-Y. J. (2015). Phylogenomics of polyploid Fothergilla (Hamamelidaceae) by RAD-tag based GBS-insights into species origin and effects of software pipelines. Journal of Systematics and Evolution, 53(5), 432–447. https://doi.org/10.1111/jse.12176 Neale, D. 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Forest Science, 60(2), 360–366. https://doi.org/10.5849/forsci.12-018 Zapata-Valenzuela, J., Whetten, R. W., Neale, D., McKeand, S., & Isik, F. (2013). Genomic Estimated Breeding Values Using Genomic Relationship Matrices in a Cloned Population of Loblolly Pine. G3: Genes|Genomes|Genetics, 3(5), 909–916. https://doi.org/10.1534/g3.113.005975 Alberto, F. J., Aitken, S. N., Alía, R., González-Martínez, S. C., Hänninen, H., Kremer, A., … Savolainen, O. (2013). Potential for evolutionary responses to climate change - evidence from tree populations. Global Change Biology, 19(6), 1645–1661. https://doi.org/10.1111/gcb.12181 Zapata-Valenzuela, J., Isik, F., Maltecca, C., Wegrzyn, J., Neale, D., McKeand, S., & Whetten, R. (2012). SNP markers trace familial linkages in a cloned population of Pinus taeda-prospects for genomic selection. TREE GENETICS & GENOMES, 8(6), 1307–1318. https://doi.org/10.1007/s11295-012-0516-5 Cumbie, W. P., Eckert, A., Wegrzyn, J., Whetten, R., Neale, D., & Goldfarb, B. (2011). Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L. Heredity, 107(2), 105–114. https://doi.org/10.1038/hdy.2010.168 Sato, Y., Yajima, Y., Tokunaga, N., & Whetten, R. (2011). Comparison between tracheary element lignin formation and extracellular lignin-like substance formation during the culture of isolated Zinnia elegans mesophyll cells. BIOLOGIA, 66(1), 88–95. https://doi.org/10.2478/s11756-010-0130-7 Isik, F., Amerson, H. V., Whetten, R. W., Garcia, S. A., & McKeand, S. E. (2011). Interactions of Fr genes and mixed-pathogen inocula in the loblolly pine-fusiform rust pathosystem. Tree Genetics & Genomes, 8(1), 15–25. https://doi.org/10.1007/s11295-011-0416-0 Xiong, J. S., Isik, F., McKeand, S. E., & Whetten, R. W. (2010). Genetic variation of stem forking in loblolly pine. Forest Science, 56(5), 429–436. Whetten, R. W., & Kellison, R. (2010). [Review of Research gap analysis for application of biotechnology to sustaining US forests]. Journal of Forestry, 108(4), 193–201. Whetten, R. W., Valenzuela, S., & Frampton, I. (2009). Polymerase chain reaction of template for massively-parallel pyrosequencing. Journal of Biomolecular Techniques, 20(2), 128–134. Morse, A. M., Whetten, R. W., Dubos, C., & Campbell, M. M. (2009). Post-translational modification of an R2R3-MYB transcription factor by a MAP Kinase during xylem development. NEW PHYTOLOGIST, 183(4), 1001–1013. https://doi.org/10.1111/j.1469-8137.2009.02900.x Isik, F., Amerson, H. V., Whetten, R. W., Garcia, S. A., Li, B., & McKeand, S. E. (2008). Resistance of Pinus taeda families under artificial inoculations with diverse fusiform rust pathogen populations and comparison with field trials. Canadian Journal of Forest Research, 38(10), 2687–2696. https://doi.org/10.1139/X08-111 Isik, F., Amerson, H. V., Whetten, R. W., Garcia, S. A., Li, B., & McKeand, S. E. (2008, December). Resistance of Pinus taeda families under artificial inoculations with diverse fusiform rust pathogen populations and comparison with field trials (vol 38, pg 2687, 2008). CANADIAN JOURNAL OF FOREST RESEARCH-REVUE CANADIENNE DE RECHERCHE FORESTIERE, Vol. 38, pp. 3151–3151. https://doi.org/10.1139/x08-910 Sato, Y., & Whetten, R. W. (2006). Characterization of two laccases of loblolly pine (Pinus taeda) expressed in tobacco BY-2 cells. JOURNAL OF PLANT RESEARCH, 119(6), 581–588. https://doi.org/10.1007/s10265-006-0020-9 Busov, V. B., Johannes, E., Whetten, R. W., Sederoff, R. R., Spiker, S. L., Lanz-Garcia, C., & Goldfarb, B. (2004). An auxin-inducible gene from loblolly pine ( Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta, 218(6), 916–927. https://doi.org/10.1007/s00425-003-1175-4 Egertsdotter, U., Zyl, L. M., MacKay, J., Peter, G., Kirst, M., Clark, C., … Sederoff, R. (2004). Gene Expression during Formation of Earlywood and Latewood in Loblolly Pine: Expression Profiles of 350 Genes. Plant Biology, 6(6), 654–663. https://doi.org/10.1055/s-2004-830383 Myburg, A. A., Vogl, C., Griffin, A. R., Sederoff, R. R., & Whetten, R. W. (2004). Genetics of Postzygotic Isolation in Eucalyptus: Whole-Genome Analysis of Barriers to Introgression in a Wide Interspecific Cross of Eucalyptus grandis and E. globulus. Genetics, 166(3), 1405–1418. https://doi.org/10.1534/genetics.166.3.1405 Zhang, Y., Brown, G., Whetten, R., Loopstra, C. A., Neale, D., Kieliszewski, M. J., & Sederoff, R. R. (2003). An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. Plant Molecular Biology, 52(1), 91–102. https://doi.org/10.1023/a:1023978210001 Kirst, M., Johnson, A. F., Baucom, C., Ulrich, E., Hubbard, K., Staggs, R., … Sederoff, R. (2003). Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana. Proceedings of the National Academy of Sciences, 100(12), 7383–7388. https://doi.org/10.1073/pnas.1132171100 Goldfarb, B., Lanz-Garcia, C., Lian, Z., & Whetten, R. (2003). Aux/IAA gene family is conserved in the gymnosperm, loblolly pine (Pinus taeda). Tree Physiology, 23(17), 1181–1192. https://doi.org/10.1093/treephys/23.17.1181 Clore, A. M., Turner, W. S., Morse, A. M., & Whetten, R. W. (2003). Changes in mitogen-activated protein kinase activity occur in the maize pulvinus in response to gravistimulation and are important for the bending response. PLANT CELL AND ENVIRONMENT, 26(7), 991–1001. https://doi.org/10.1046/j.1365-3040.2003.00990.x Patzlaff, A., Newman, L. J., Dubos, C., Whetten, R. W., Smith, C., McInnis, S., … Campbell, M. M. (2003). Characterisation of PtMYB1, an R2R3-MYB from pine xylem. Plant Molecular Biology, 53(4), 597–608. https://doi.org/10.1023/b:plan.0000019066.07933.d6 Patzlaff, A., McInnis, S., Courtenay, A., Surman, C., Newman, L. J., Smith, C., … Campbell, M. M. (2003). Characterisation of a pine MYB that regulates lignification. The Plant Journal, 36(6), 743–754. https://doi.org/10.1046/j.1365-313x.2003.01916.x Myburg, A. A., Griffin, A. R., Sederoff, R. R., & Whetten, R. W. (2003). Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F1 hybrid based on a double pseudo-backcross mapping approach. Theoretical and Applied Genetics, 107(6), 1028–1042. https://doi.org/10.1007/s00122-003-1347-4 Heath, L. S., Ramakrishnan, N., Sederoff, R. R., Whetten, R. W., Chevone, B. I., Struble, C. A., … al. (2002). Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system. COMPARATIVE AND FUNCTIONAL GENOMICS, 3(3), 226–243. https://doi.org/10.1002/cfg.169 Whetten, R., Sun, Y.-H., Zhang, Y., & Sederoff, R. (2001). Functional genomics and cell wall biosynthesis in loblolly pine. In Plant Cell Walls (pp. 275–291). https://doi.org/10.1007/978-94-010-0668-2_16 Whetten, R., Sun, Y.-H., Zhang, Y., & Sederoff, R. (2001). Functional genomics and cell wall biosynthesis in loblolly pine. Plant Molecular Biology, 47(1/2), 275–291. https://doi.org/10.1023/a:1010652003395 Tang, W., Whetten, R., & Sederoff, R. (2001). Genotypic control of high-frequency adventitious shoot regeneration via somatic organogenesis in loblolly pine. Plant Science, 161(2), 267–272. https://doi.org/10.1016/s0168-9452(01)00394-6 Myburg, A. A., Remington, D. L., DM O'Malley, Sederoff, R. R., & Whetten, R. W. (2001). High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer. BIOTECHNIQUES, 30(2), 348-+. https://doi.org/10.2144/01302tt04 Sato, Y., Wuli, B., Sederoff, R., & Whetten, R. (2001). Molecular Cloning and Expression of Eight Laccase cDNAs in Loblolly Pine (Pinus taeda)*. Journal of Plant Research, 114(2), 147–155. https://doi.org/10.1007/pl00013978 Tang, W., Sederoff, R., & Whetten, R. (2001). Regeneration of transgenic loblolly pine (Pinus taeda L.) from zygotic embryos transformed with Agrobacterium tumefaciens. PLANTA, 213(6), 981–989. https://doi.org/10.1007/s004250100566 Remington, D. L., Whetten, R. W., Liu, B. H., & DM O'Malley. (1999). Construction of an AFLP genetic map with nearly complete genome coverage in Pinus taeda. THEORETICAL AND APPLIED GENETICS, 98(8), 1279–1292. https://doi.org/10.1007/s001220051194 Wenck, A. R., Quinn, M., Whetten, R., Pullman, G., & Sederoff, R. (1999). High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda). Plant Molecular Biology, 39(3), 407–416. https://doi.org/10.1023/a:1006126609534 Marques, C. M., Araujo, J. A., Ferreira, J. G., Whetten, R., DM O'Malley, Liu, B. H., & Sederoff, R. (1998). AFLP genetic maps of Eucalyptus globulus and E-tereticornis. THEORETICAL AND APPLIED GENETICS, 96(6-7), 727–737. https://doi.org/10.1007/s001220050795 Allona, I., Quinn, M., Shoop, E., Swope, K., St Cyr, S., Carlis, J., … Whetten, R. W. (1998). Analysis of xylem formation in pine by cDNA sequencing. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(16), 9693–9698. https://doi.org/10.1073/pnas.95.16.9693 MacKay, J., O'Malley, D., Whetten, R., & Sederoff, R. (1998). Method of altering lignin in trees. Washington, DC: U.S. Patent and Trademark Office. Whetten, R. W., MacKay, J. J., & Sederoff, R. R. (1998). [Review of Recent advances in understanding lignin biosynthesis]. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY, 49(1998), 585–609. https://doi.org/10.1146/annurev.arplant.49.1.585 Ralph, J., MacKay, J. J., Hatfield, R. D., OMalley, D. M., Whetten, R. W., & Sederoff, R. R. (1997). Abnormal lignin in a loblolly pine mutant. SCIENCE, 277(5323), 235–239. https://doi.org/10.1126/science.277.5323.235 MacKay, J. J., OMalley, D. M., Presnell, T., Booker, F. L., Campbell, M. M., Whetten, R. W., & Sederoff, R. R. (1997, July 22). Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 94, pp. 8255–8260. https://doi.org/10.1073/pnas.94.15.8255 O'Malley, D. M., & Whetten, R. (1997). Molecular markers and forest trees. In P. M. G. G. Caetano-Anolles (Ed.), DNA markers: Protocols, applications, and overviews (pp. 237–257). New York: Wiley-VCH. Voo, K. S., Whetten, R. W., O'Malley, D. M., & Sederoff, R. R. (1995). 4-Coumarate: Coenzyme A Ligase from Loblolly Pine Xylem: Isolation, Characterization, and Complementary DNA Cloning. Plant Physiology, 108(1), 85–97. https://doi.org/10.1104/pp.108.1.85 Chaparro, J. X., Werner, D. J., Whetten, R. W., & O'Malley, D. M. (1995). Characterization of an Unstable Anthocyanin Phenotype and Estimation of Somatic Mutation Rates in Peach. Journal of Heredity, 86(3), 186–193. https://doi.org/10.1093/oxfordjournals.jhered.a111560 MacKay, J. J., Liu, W., Whetten, R., Sederoff, R. R., & O'Malley, D. M. (1995). Genetic analysis of cinnamyl alcohol dehydrogenase in loblolly pine: single gene inheritance, molecular characterization and evolution. MGG Molecular & General Genetics, 247(5), 537–545. https://doi.org/10.1007/bf00290344 Chaparro, J. X., Werner, D. J., Whetten, R. W., & O'Malley, D. M. (1995). Inheritance, Genetic Interaction, and Biochemical Characterization of Anthocyanin Phenotypes in Peach. Journal of Heredity, 86(1), 32–38. https://doi.org/10.1093/oxfordjournals.jhered.a111522 WHETTEN, R., & SEDEROFF, R. (1995). [Review of LIGNIN BIOSYNTHESIS]. PLANT CELL, 7(7), 1001–1013. https://doi.org/10.2307/3870053 Bao, W., O'Malley, D. M., Whetten, R., & Sederoff, R. R. (1993). A Laccase Associated with Lignification in Loblolly Pine Xylem. Science, 260(5108), 672–674. https://doi.org/10.1126/science.260.5108.672 O'Malley, D. M., Whetten, R., Bao, W., Chen, C.-L., & Sederoff, R. R. (1993). The role of laccase in lignification. The Plant Journal, 4(5), 751–757. https://doi.org/10.1046/j.1365-313x.1993.04050751.x WHETTEN, R. W., & SEDEROFF, R. R. (1992). PHENYLALANINE AMMONIA-LYASE FROM LOBLOLLY-PINE - PURIFICATION OF THE ENZYME AND ISOLATION OF COMPLEMENTARY-DNA CLONES. PLANT PHYSIOLOGY, 98(1), 380–386. https://doi.org/10.1104/pp.98.1.380 Whetten, R., & Sederoff, R. (1991). Genetic engineering of wood. Forest Ecology and Management, 43(3-4), 301–316. https://doi.org/10.1016/0378-1127(91)90133-g Whetten, R., Organ, E., Krasney, P., Cox-Foster, D., & Cavener, D. (1988). Molecular structure and transformation of the glucose dehydrogenase gene in Drosophila melanogaster. Genetics, 120(2), 475–484. Cavener, D., Corbett, G., Cox, D., & Whetten, R. (1986). Isolation of the eclosion gene cluster and the developmental expression of the Gld gene in Drosophila melanogaster. The EMBO Journal, 5(11), 2939–2948. https://doi.org/10.1002/j.1460-2075.1986.tb04590.x