Works (29)
Updated: November 16th, 2024 05:07
2024 journal article
New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
ISME COMMUNICATIONS, 4(1).
author keywords: marine microbiology; vitamin B1; vitamin; thiamin; LC/MS; metagenomics; bacterioplankton; auxotrophy
open access via academic.oup.com (publisher PDF)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 12, 2024
2023 article
Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange
Paerl, R. W., Curtis, N. P., Bittner, M. J., Cohn, M. R., Gifford, S. M., Bannon, C. C., … Bertrand, E. M. (2023, June 28). MBIO, Vol. 6.
author keywords: marine microbiology; vitamin; thiamin; LC; MS; phytoplankton; bacterioplankton; vitamin B1
TL;DR:
Results of this collaborative study newly show that a vitamin B1 degradation product, N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine (FAMP), can be used by diverse marine microbes (bacteria and phytoplankton) to meet their vitamin B 1 demands instead of B1 and that FAMP occurs in the surface ocean.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: July 31, 2023
2022 journal article
Exchange of Vitamin B-1 and Its Biosynthesis Intermediates Shapes the Composition of Synthetic Microbial Cocultures and Reveals Complexities of Nutrient Sharing
JOURNAL OF BACTERIOLOGY, 204(4).
author keywords: HMP; nutrient exchange; synthetic microbial coculture; thiamin; thiazole; vitamin B-1
MeSH headings : Coculture Techniques; Escherichia coli / genetics; Escherichia coli / metabolism; Nutrients; Thiamine; Thiazoles / metabolism; Vitamins / metabolism
TL;DR:
The exchange of vitamin B1 (thiamin) and its intermediates between microbes within synthetic cocultures of Escherichia coli and Vibrio anguillarum revealed that there exist specific patterns for thiamin metabolism and exchange among these microbes and underscores the importance of the exchange of essential metabolites as a defining factor in building and modulating synthetic or natural microbial communities.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: May 2, 2022
2022 journal article
Harmful cyanobacterial aerosolization dynamics in the airshed of a eutrophic estuary
SCIENCE OF THE TOTAL ENVIRONMENT, 852.
author keywords: Water quality; Toxic Cyanobacteria; Air quality; PM2.5; Microcystis; Dolichospermum
MeSH headings : Microcystins / analysis; Estuaries; Lakes / microbiology; Ecosystem; Cyanobacteria; Harmful Algal Bloom; Particulate Matter / analysis
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: October 3, 2022
2022 journal article
Key Knowledge Gaps to Fill at the Cell-To-Ecosystem Level in Marine B-Vitamin Cycling
FRONTIERS IN MARINE SCIENCE, 9.
author keywords: nutrient cycling; marine plankton; B-vitamin; vitamin B12; vitamin B1; microbial interactions; cross-feeding; auxotrophy
TL;DR:
It is argued that significant advances in understanding of the impact of B-vitamin exchange and cycling on marine community structure and biogeochemistry can be made by focusing on unknowns related to the ‘in’s and out’ of B’vitamin transport, exchange between plankton, and ecosystem scale processing/transformation ofB-vitamins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: June 27, 2022
2020 journal article
Elevated organic carbon pulses persist in estuarine environment after major storm events
LIMNOLOGY AND OCEANOGRAPHY LETTERS, 6(1), 43–50.
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: October 5, 2020
2020 journal article
Picophytoplankton dynamics in a large temperate estuary and impacts of extreme storm events
SCIENTIFIC REPORTS, 10(1).
TL;DR:
It is concluded that precipitation is a highly influential factor on estuarine PicoP biomass and composition, and how ‘wetter’ future climate conditions will have ecosystem impacts down to the smallest of phytoplankton is shown.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: January 19, 2021
2019 journal article
Characterization of Ice‐Nucleating Particles Over Northern India
Journal of Geophysical Research: Atmospheres, 124(19), 10467–10482.
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: January 6, 2020
2018 journal article
Author Correction: Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis
Scientific Reports, 8(1).
TL;DR:
A correction to this article has been published and is linked from the HTML and PDF versions of this paper.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
3. Good Health and Well-being
(Web of Science)
Sources: Crossref, NC State University Libraries
Added: February 12, 2020
2018 journal article
Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis
Scientific Reports, 8(1).
MeSH headings : Animals; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Line; Escherichia coli / metabolism; Mice; Nutrients / metabolism; Phytoplankton / metabolism; Thiamine / biosynthesis; Thiazoles / metabolism
TL;DR:
It is demonstrated that 5-(2-hydroxyethyl)-4-methyl-1,3-thiazole-2-carboxylic acid (cHET) is a useful in vivo B1 precursor for representatives of ubiquitous marine picoeukaryotic phytoplankton and Escherichia coli – drawing attention to cHET as a valuable exogenous micronutrient for microorganisms with ecological, industrial, and biomedical value.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
2018 journal article
Diazotrophs and N-2-Fixation Associated With Particles in Coastal Estuarine Waters
FRONTIERS IN MICROBIOLOGY, 9.
author keywords: diazotrophs; nitrogen fixation; marine particles; nifH; estuary
TL;DR:
It is indicated that resuspension of sediment material can elevate pelagic N2-fixation, and it is shown that diverse natural diazotrophs can colonize artificial surfaces, but colonization by “pioneer” bacterioplankton that more rapidly associate with surfaces appears to be a prerequisite.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: December 3, 2018
2018 journal article
Filtration via Conventional Glass Fiber Filters in 15N2 Tracer Assays Fails to Capture All Nitrogen-Fixing Prokaryotes
Frontiers in Marine Science, 5.
author keywords: oceanic nitrogen fixation; diazotrophs; cyanobacteria; glass fiber filter; bias; filtration
TL;DR:
Using Illumina sequencing of nitrogenase (nifH) gene amplicons, it is shown that diazotroph communities can markedly differ between bulk water and filtrates from GF/F and Advantec filtrations, suggesting that different d Diazotrophs can pass through the filter types.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2018 journal article
N-fixation and related O2 constraints on model marine diazotroph Pseudomonas stutzeri BAL361
Aquatic Microbial Ecology, 81(2), 125–136.
author keywords: Diazotrophs; N-fixation; Pseudomonas; Oxygen; Marine particles
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: January 27, 2020
2018 journal article
Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(44), E10447–E10456.
author keywords: vitamin B1; thiamin; bacterioplankton; metagenomics; growth limitation
MeSH headings : Bacteria / genetics; Bacteria / metabolism; Fresh Water; Gene Expression Regulation, Bacterial; Genome, Bacterial; Genomics / methods; Genotype; Plankton; Seawater; Thiamine / metabolism; Transcriptome
TL;DR:
It is shown that B1 auxotrophy, the need for exogenous B1 or precursors for survival, is widespread among wild bacterioplankton, and a hitherto overlooked influence of B1/precursor availability on aquatic biochemical cycling is suggested.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 19, 2018
2016 journal article
Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection
Trends in Microbiology, 24(11), 916–927.
MeSH headings : Archaea / enzymology; Archaea / genetics; Archaea / metabolism; Bacteria / enzymology; Bacteria / genetics; Bacteria / metabolism; Cyanobacteria / enzymology; Cyanobacteria / metabolism; Ecology; Heterotrophic Processes; Nitrogen / metabolism; Nitrogen Cycle; Nitrogen Fixation / physiology; Nitrogenase / genetics; Oceans and Seas; Oxidoreductases / classification; Phylogeny; Seawater / microbiology
TL;DR:
The need for combining rate measurements and molecular analyses of field samples with cultivation studies in order to clarify the ecology of non-cyanobacteria and their contribution to marine N2 fixation on local and global scales is highlighted.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2016 journal article
Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton
The ISME Journal, 11(3), 753–765.
MeSH headings : Chlorophyta / genetics; Eukaryota / metabolism; Plankton / classification; Plankton / metabolism; Pyrimidines; Thiamine / chemistry; Thiamine / metabolism; Thiazoles / metabolism
TL;DR:
Thiazole-related B1 precursors are found to be important micronutrients promoting the survival of abundant phytoplankton influencing surface ocean production and biogeochemical cycling.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: February 12, 2020
2015 journal article
Vitamin B1 ecophysiology of marine picoeukaryotic algae: Strain-specific differences and a new role for bacteria in vitamin cycling
Limnology and Oceanography, 60(1), 215–228.
TL;DR:
It is confirmed that bacteria influence vitamin B1 availability beyond de novo synthesis and consumption; they can also serve as conduits that chemically alter, but not completely degrade or retain B1 analogs (e.g., TDP) and make them accessible to a broader range of microbes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 12, 2020
2014 journal article
A microarray for assessing transcription from pelagic marine microbial taxa
The ISME Journal, 8(7), 1476–1491.
author keywords: marine; microbial; microarray; transcription; molecular
MeSH headings : Alphaproteobacteria / classification; Alphaproteobacteria / genetics; Aquatic Organisms; Archaea / classification; Archaea / genetics; Genetic Markers; Genetic Variation; Iron / metabolism; Metagenome; Microbial Consortia; Oceans and Seas; Oligonucleotide Array Sequence Analysis; Phylogeny; Prochlorococcus / classification; Prochlorococcus / genetics; Synechococcus / classification; Synechococcus / genetics; Transcription, Genetic; Viruses / classification; Viruses / genetics
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2014 journal article
Gammaproteobacterial diazotrophs and nifH gene expression in surface waters of the South Pacific Ocean
The ISME Journal, 8(10), 1962–1973.
author keywords: Crocosphaera; diel cycle; nifH; nitrogen cycle; transcription; UCYN-A
MeSH headings : Cyanobacteria / genetics; Gammaproteobacteria / genetics; Gammaproteobacteria / metabolism; Gene Dosage; Gene Expression; Nitrogen Fixation / genetics; Oxidoreductases / genetics; Oxidoreductases / metabolism; Pacific Ocean; Phylogeny; Seawater / microbiology; Temperature; Water Microbiology
TL;DR:
It is suggested that γ-24774A11 could be one of the most important heterotrophic (or photoheterotrophic) diazotrophs and may need to be considered in future N budget estimates and models.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2012 journal article
Variation in Synechococcus sp. CC9311 narB mRNA abundance relative to changes in light, nitrogen growth conditions and nitrate assimilation.
Journal of Phycology, 48(4), 1028–1039.
author keywords: diel light; irradiance; mRNA; narB; nitrate assimilation; nitrate reductase; qPCR; Synechococcus; transcript abundance
TL;DR:
Environmental sampling for narB transcripts should consider time, irradiance, and the growth status of cells to ecologically interpret narB transcript abundances, as changes in narB mRNA levels in nitrogen‐deprived CC9311 cultures following nitrate amendment were distinct from cultures grown solely on nitrate.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: March 8, 2020
2011 journal article
Differential Distributions of Synechococcus Subgroups Across the California Current System
Frontiers in Microbiology, 2.
author keywords: Synechococcus; picocyanobacteria; biogeography; CCS; eastern-Pacific; qPCR; narB
TL;DR:
The presented biogeographic data provides insight on the distributions and ecologies of Synechococcus present in an eastern boundary current system.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: January 27, 2020
2011 journal article
Nitrogen fixation and transfer in open ocean diatom–cyanobacterial symbioses
The ISME Journal, 5(9), 1484–1493.
author keywords: nanoSIMS; symbioses; cyanobiont; diatoms; N-2 fixation
MeSH headings : Cyanobacteria / growth & development; Cyanobacteria / physiology; Diatoms / physiology; Nitrogen Fixation; Seawater / microbiology; Seawater / parasitology; Symbiosis
TL;DR:
This study provides new information on the mechanisms controlling N input into the open ocean by symbiotic microorganisms, which are widespread and important for oceanic primary production and the first demonstration of N transfer from an N2 fixer to a unicellular partner.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2011 journal article
Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation
The ISME Journal, 6(3), 513–523.
author keywords: Crenarchaeota; Environmental Sample Processor; Monterey Bay; Synechococcus; Thaumarchaeota; time series
MeSH headings : Archaea / genetics; Archaea / growth & development; Bays / microbiology; California; Chlorophyll / analysis; Chlorophyll A; Ecosystem; Nitrates / analysis; Pacific Ocean; Phytoplankton / classification; Polymerase Chain Reaction; Population Dynamics; RNA, Ribosomal, 16S / genetics; Remote Sensing Technology; Seasons; Synechococcus / genetics; Synechococcus / growth & development
TL;DR:
It is concluded that controls on these ecosystems change on smaller scales than are routinely assessed, and that more predictable trends will be uncovered if they are evaluated within seasonal (monthly) rather than on annual or interannual scales.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: February 12, 2020
2011 journal article
Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR
Environmental Microbiology, 14(3), 580–593.
MeSH headings : Bacterial Proteins / genetics; Base Sequence; Bays / microbiology; California; Genes, Bacterial; Molecular Sequence Data; Polymerase Chain Reaction; Seasons; Seawater / microbiology; Synechococcus / classification; Synechococcus / genetics; Synechococcus / growth & development; Water Microbiology
TL;DR:
Differences in narB subgroup abundance maxima and abundance patterns support the view that subgroups differ in their ecologies, including subgroup D_C1, which seems to specifically thrive in coastal waters.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2010 journal article
Abundance and distribution of major groups of diazotrophic cyanobacteria and their potential contribution to N2 fixation in the tropical Atlantic Ocean
Environmental Microbiology, 12, 3272–3289.
MeSH headings : Atlantic Ocean; Cabo Verde; Cyanobacteria / classification; Cyanobacteria / enzymology; Cyanobacteria / genetics; Cyanobacteria / isolation & purification; DNA, Bacterial / isolation & purification; Geography; Models, Biological; Nitrogen Fixation; Oxidoreductases / genetics; Seawater / analysis; Seawater / microbiology; Temperature; Water Microbiology
TL;DR:
Overall, highest diazotroph abundances were observed at the surface and declined with depth, except for some subsurface peaks in Trichodesmium,UCYN-B and UCYN-A, which suggested that Trichodemium had the largest input to N₂ fixation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: December 26, 2020
2010 journal article
Variation in ultrafiltered and LMW organic matter fluorescence properties under simulated estuarine mixing transects: 2. Mixing with photoexposure
Journal of Geophysical Research, 115.
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries, Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii
The ISME Journal, 3(5), 618–631.
author keywords: metatranscriptome; Crocosphaera; gene expression; transposase; diazotroph; oligotrophic
MeSH headings : Atlantic Ocean; Cyanobacteria / genetics; Gene Expression Profiling; Genome, Bacterial; Iron / metabolism; Nitrogen / metabolism; Nitrogen Fixation / genetics; Pacific Ocean; RNA, Messenger / biosynthesis; RNA, Viral / biosynthesis; Seawater / microbiology; Transposases / genetics
TL;DR:
The C. watsonii population had unexpectedly high transcription of hypothetical protein genes and the iron-stress-induced protein A that functions to protect photosystem I from high-light-induced damage, and genes were expressed that are necessary for living in the oligotrophic ocean.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2009 journal article
Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat
Limnology and Oceanography, 54(6), 1981–1994.
TL;DR:
The metagenomic distribution of genes among metabolic pathways was very similar at all stations despite phylogenetic differences, but was unrelated to physicochemical habitat, suggesting that dominant microorganisms have a core suite of genes necessary for life in the open ocean.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 5, 2020
2008 journal article
Phylogenetic diversity of cyanobacterial narB genes from various marine habitats
Environmental Microbiology, 10(12), 3377–3387.
MeSH headings : Atlantic Ocean; Bacterial Proteins / genetics; Cluster Analysis; Cyanobacteria / classification; Cyanobacteria / isolation & purification; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; DNA, Ribosomal Spacer; Genes, rRNA; Molecular Sequence Data; Nitrate Reductase / genetics; Pacific Ocean; Phylogeny; Polymorphism, Genetic; RNA, Bacterial / genetics; RNA, Ribosomal, 16S / genetics; Seawater / microbiology; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid
TL;DR:
The phylogeny of recovered narB gene sequences was consistent with 16S rRNA and ITS sequence phylogenies, suggesting minimal horizontal gene transfer of the narB Gene, indicating that narB expression can be detected in environmental samples.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: February 6, 2020
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