Works (28)

Updated: August 6th, 2023 05:01

2023 article

Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange

Paerl, R. W., Curtis, N. P., Bittner, M. J., Cohn, M. R., Gifford, S. M., Bannon, C. C., … Bertrand, E. M. (2023, June 28). MBIO, Vol. 6.

co-author countries: Canada 🇨🇦 Denmark 🇩🇰 United States of America 🇺🇸
author keywords: marine microbiology; vitamin; thiamin; LC; MS; phytoplankton; bacterioplankton; vitamin B1
Sources: Web Of Science, ORCID
Added: July 31, 2023

2022 journal article

Exchange of Vitamin B-1 and Its Biosynthesis Intermediates Shapes the Composition of Synthetic Microbial Cocultures and Reveals Complexities of Nutrient Sharing

JOURNAL OF BACTERIOLOGY, 204(4).

By: R. Sathe*, R. Paerl n & A. Hazra*

co-author countries: India 🇮🇳 United States of America 🇺🇸
author keywords: HMP; nutrient exchange; synthetic microbial coculture; thiamin; thiazole; vitamin B-1
MeSH headings : Coculture Techniques; Escherichia coli / genetics; Escherichia coli / metabolism; Nutrients; Thiamine; Thiazoles / metabolism; Vitamins / metabolism
Sources: Web Of Science, ORCID
Added: May 2, 2022

2022 journal article

Harmful cyanobacterial aerosolization dynamics in the airshed of a eutrophic estuary

SCIENCE OF THE TOTAL ENVIRONMENT, 852.

By: H. Plaas*, R. Paerl n, K. Baumann*, C. Karl, K. Popendorf*, M. Barnard*, N. Chang*, N. Curtis n ...

co-author countries: United States of America 🇺🇸
author keywords: Water quality; Toxic Cyanobacteria; Air quality; PM2.5; Microcystis; Dolichospermum
MeSH headings : Microcystins / analysis; Estuaries; Lakes / microbiology; Ecosystem; Cyanobacteria; Harmful Algal Bloom; Particulate Matter / analysis
Sources: Web Of Science, ORCID
Added: October 3, 2022

2022 journal article

Key Knowledge Gaps to Fill at the Cell-To-Ecosystem Level in Marine B-Vitamin Cycling

FRONTIERS IN MARINE SCIENCE, 9.

By: G. Wienhausen*, M. Bittner* & R. Paerl n

co-author countries: Germany 🇩🇪 Denmark 🇩🇰 United States of America 🇺🇸
author keywords: nutrient cycling; marine plankton; B-vitamin; vitamin B12; vitamin B1; microbial interactions; cross-feeding; auxotrophy
Sources: Web Of Science, ORCID
Added: June 27, 2022

2021 journal article

Elevated organic carbon pulses persist in estuarine environment after major storm events

LIMNOLOGY AND OCEANOGRAPHY LETTERS, 6(1), 43–50.

By: E. Asmala*, C. Osburn n, R. Paerl n & H. Paerl*

co-author countries: Finland 🇫🇮 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: October 5, 2020

2020 journal article

Picophytoplankton dynamics in a large temperate estuary and impacts of extreme storm events

SCIENTIFIC REPORTS, 10(1).

By: R. Paerl n, R. Venezia n, J. Sanchez n & H. Paerl*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: January 19, 2021

2019 journal article

Characterization of Ice‐Nucleating Particles Over Northern India

Journal of Geophysical Research: Atmospheres, 124(19), 10467–10482.

By: S. Yadav n, R. Venezia n, R. Paerl n & M. Petters n

co-author countries: India 🇮🇳 United States of America 🇺🇸
Sources: Web Of Science, ORCID, Crossref
Added: January 6, 2020

2018 journal article

Author Correction: Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis

Scientific Reports, 8(1).

By: R. Paerl n, E. Bertrand*, E. Rowland*, P. Schatt*, M. Mehiri*, T. Niehaus*, A. Hanson*, L. Riemann*, F. Bouget*

co-author countries: Canada 🇨🇦 Denmark 🇩🇰 France 🇫🇷 United States of America 🇺🇸
Sources: Crossref, ORCID
Added: February 12, 2020

2018 journal article

Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis

Scientific Reports, 8(1).

co-author countries: Canada 🇨🇦 Denmark 🇩🇰 France 🇫🇷 United States of America 🇺🇸
MeSH headings : Animals; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Line; Escherichia coli / metabolism; Mice; Nutrients / metabolism; Phytoplankton / metabolism; Thiamine / biosynthesis; Thiazoles / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2018 journal article

Diazotrophs and N-2-Fixation Associated With Particles in Coastal Estuarine Waters

FRONTIERS IN MICROBIOLOGY, 9.

By: J. Pedersen*, D. Bombar*, R. Paerl* & L. Riemann*

co-author countries: Denmark 🇩🇰
author keywords: diazotrophs; nitrogen fixation; marine particles; nifH; estuary
Sources: Web Of Science, ORCID
Added: December 3, 2018

2018 journal article

Filtration via Conventional Glass Fiber Filters in 15N2 Tracer Assays Fails to Capture All Nitrogen-Fixing Prokaryotes

Frontiers in Marine Science, 5.

co-author countries: Denmark 🇩🇰
author keywords: oceanic nitrogen fixation; diazotrophs; cyanobacteria; glass fiber filter; bias; filtration
Sources: Crossref, ORCID
Added: February 5, 2020

2018 journal article

N-fixation and related O2 constraints on model marine diazotroph Pseudomonas stutzeri BAL361

Aquatic Microbial Ecology, 81(2), 125–136.

By: R. Paerl*, T. Hansen, N. Henriksen, A. Olesen & L. Riemann

author keywords: Diazotrophs; N-fixation; Pseudomonas; Oxygen; Marine particles
Sources: Crossref, ORCID
Added: January 27, 2020

2018 journal article

Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(44), E10447–E10456.

co-author countries: Denmark 🇩🇰 Sweden 🇸🇪 United States of America 🇺🇸
author keywords: vitamin B1; thiamin; bacterioplankton; metagenomics; growth limitation
MeSH headings : Bacteria / genetics; Bacteria / metabolism; Fresh Water; Gene Expression Regulation, Bacterial; Genome, Bacterial; Genomics / methods; Genotype; Plankton; Seawater; Thiamine / metabolism; Transcriptome
Sources: Web Of Science, ORCID
Added: November 19, 2018

2017 journal article

Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton

The ISME Journal, 11(3), 753–765.

By: R. Paerl*, F. Bouget*, J. Lozano*, V. Vergé*, P. Schatt*, E. Allen*, B. Palenik*, F. Azam*

co-author countries: Denmark 🇩🇰 France 🇫🇷 United States of America 🇺🇸
MeSH headings : Chlorophyta / genetics; Eukaryota / metabolism; Plankton / classification; Plankton / metabolism; Pyrimidines; Thiamine / chemistry; Thiamine / metabolism; Thiazoles / metabolism
Sources: Web Of Science, Crossref, ORCID
Added: February 12, 2020

2016 journal article

Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection

Trends in Microbiology, 24(11), 916–927.

By: D. Bombar*, R. Paerl* & L. Riemann*

co-author countries: Denmark 🇩🇰
MeSH headings : Archaea / enzymology; Archaea / genetics; Archaea / metabolism; Bacteria / enzymology; Bacteria / genetics; Bacteria / metabolism; Cyanobacteria / enzymology; Cyanobacteria / metabolism; Ecology; Heterotrophic Processes; Nitrogen / metabolism; Nitrogen Cycle; Nitrogen Fixation / physiology; Nitrogenase / genetics; Oceans and Seas; Oxidoreductases / classification; Phylogeny; Seawater / microbiology
Sources: Crossref, ORCID
Added: February 5, 2020

2015 journal article

Vitamin B1 ecophysiology of marine picoeukaryotic algae: Strain-specific differences and a new role for bacteria in vitamin cycling

Limnology and Oceanography, 60(1), 215–228.

By: R. Paerl*, E. Bertrand*, A. Allen*, B. Palenik* & F. Azam*

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: February 12, 2020

2014 journal article

A microarray for assessing transcription from pelagic marine microbial taxa

The ISME Journal, 8(7), 1476–1491.

By: I. Shilova*, J. Robidart*, H. James Tripp*, K. Turk-Kubo*, B. Wawrik*, A. Post*, A. Thompson*, B. Ward* ...

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: marine; microbial; microarray; transcription; molecular
MeSH headings : Alphaproteobacteria / classification; Alphaproteobacteria / genetics; Aquatic Organisms; Archaea / classification; Archaea / genetics; Genetic Markers; Genetic Variation; Iron / metabolism; Metagenome; Microbial Consortia; Oceans and Seas; Oligonucleotide Array Sequence Analysis; Phylogeny; Prochlorococcus / classification; Prochlorococcus / genetics; Synechococcus / classification; Synechococcus / genetics; Transcription, Genetic; Viruses / classification; Viruses / genetics
Sources: Crossref, ORCID
Added: February 5, 2020

2014 journal article

Gammaproteobacterial diazotrophs and nifH gene expression in surface waters of the South Pacific Ocean

The ISME Journal, 8(10), 1962–1973.

By: P. Moisander*, T. Serros*, R. Paerl*, R. Beinart* & J. Zehr*

co-author countries: United States of America 🇺🇸
author keywords: Crocosphaera; diel cycle; nifH; nitrogen cycle; transcription; UCYN-A
MeSH headings : Cyanobacteria / genetics; Gammaproteobacteria / genetics; Gammaproteobacteria / metabolism; Gene Dosage; Gene Expression; Nitrogen Fixation / genetics; Oxidoreductases / genetics; Oxidoreductases / metabolism; Pacific Ocean; Phylogeny; Seawater / microbiology; Temperature; Water Microbiology
Sources: Crossref, ORCID
Added: February 5, 2020

2012 journal article

Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation

The ISME Journal, 6(3), 513–523.

By: J. Robidart*, C. Preston*, R. Paerl*, K. Turk*, A. Mosier*, C. Francis*, C. Scholin*, J. Zehr*

co-author countries: United States of America 🇺🇸
author keywords: Crenarchaeota; Environmental Sample Processor; Monterey Bay; Synechococcus; Thaumarchaeota; time series
MeSH headings : Archaea / genetics; Archaea / growth & development; Bays / microbiology; California; Chlorophyll / analysis; Chlorophyll A; Ecosystem; Nitrates / analysis; Pacific Ocean; Phytoplankton / classification; Polymerase Chain Reaction; Population Dynamics; RNA, Ribosomal, 16S / genetics; Remote Sensing Technology; Seasons; Synechococcus / genetics; Synechococcus / growth & development
Sources: Web Of Science, Crossref, ORCID
Added: February 12, 2020

2012 journal article

Variation in Synechococcus sp. CC9311 narB mRNA abundance relative to changes in light, nitrogen growth conditions and nitrate assimilation.

Journal of Phycology, 48(4), 1028–1039.

By: R. Paerl*, S. Tozzi*, Z. Kolber* & J. Zehr*

co-author countries: United States of America 🇺🇸
author keywords: diel light; irradiance; mRNA; narB; nitrate assimilation; nitrate reductase; qPCR; Synechococcus; transcript abundance
Sources: Crossref, ORCID
Added: March 8, 2020

2011 journal article

Differential Distributions of Synechococcus Subgroups Across the California Current System

Frontiers in Microbiology, 2.

By: R. Paerl*, K. Johnson, R. Welsh, A. Worden, F. Chavez & J. Zehr

author keywords: Synechococcus; picocyanobacteria; biogeography; CCS; eastern-Pacific; qPCR; narB
Sources: Crossref, ORCID
Added: January 27, 2020

2011 journal article

Nitrogen fixation and transfer in open ocean diatom–cyanobacterial symbioses

The ISME Journal, 5(9), 1484–1493.

By: R. Foster*, M. Kuypers*, T. Vagner*, R. Paerl*, N. Musat* & J. Zehr*

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: nanoSIMS; symbioses; cyanobiont; diatoms; N-2 fixation
MeSH headings : Cyanobacteria / growth & development; Cyanobacteria / physiology; Diatoms / physiology; Nitrogen Fixation; Seawater / microbiology; Seawater / parasitology; Symbiosis
Sources: Crossref, ORCID
Added: February 5, 2020

2011 journal article

Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR

Environmental Microbiology, 14(3), 580–593.

By: R. Paerl*, K. Turk*, R. Beinart*, F. Chavez* & J. Zehr*

co-author countries: United States of America 🇺🇸
MeSH headings : Bacterial Proteins / genetics; Base Sequence; Bays / microbiology; California; Genes, Bacterial; Molecular Sequence Data; Polymerase Chain Reaction; Seasons; Seawater / microbiology; Synechococcus / classification; Synechococcus / genetics; Synechococcus / growth & development; Water Microbiology
Sources: Crossref, ORCID
Added: February 5, 2020

2010 journal article

Abundance and distribution of major groups of diazotrophic cyanobacteria and their potential contribution to N2 fixation in the tropical Atlantic Ocean

Environmental Microbiology, 12, 3272–3289.

By: N. Goebel*, K. Turk*, K. Achilles*, R. Paerl*, I. Hewson*, A. Morrison*, J. Montoya*, C. Edwards*, J. Zehr*

co-author countries: United States of America 🇺🇸
MeSH headings : Atlantic Ocean; Cabo Verde; Cyanobacteria / classification; Cyanobacteria / enzymology; Cyanobacteria / genetics; Cyanobacteria / isolation & purification; DNA, Bacterial / isolation & purification; Geography; Models, Biological; Nitrogen Fixation; Oxidoreductases / genetics; Seawater / analysis; Seawater / microbiology; Temperature; Water Microbiology
Sources: Web Of Science, ORCID
Added: December 26, 2020

2010 journal article

Variation in ultrafiltered and LMW organic matter fluorescence properties under simulated estuarine mixing transects: 2. Mixing with photoexposure

Journal of Geophysical Research, 115.

By: T. Boyd*, B. Barham*, G. Hall*, B. Schumann*, R. Paerl* & C. Osburn n

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID, Web Of Science
Added: August 6, 2018

2009 journal article

In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii

The ISME Journal, 3(5), 618–631.

By: I. Hewson*, R. Poretsky*, R. Beinart*, A. White*, T. Shi*, S. Bench*, P. Moisander*, R. Paerl* ...

co-author countries: United States of America 🇺🇸
author keywords: metatranscriptome; Crocosphaera; gene expression; transposase; diazotroph; oligotrophic
MeSH headings : Atlantic Ocean; Cyanobacteria / genetics; Gene Expression Profiling; Genome, Bacterial; Iron / metabolism; Nitrogen / metabolism; Nitrogen Fixation / genetics; Pacific Ocean; RNA, Messenger / biosynthesis; RNA, Viral / biosynthesis; Seawater / microbiology; Transposases / genetics
Sources: Crossref, ORCID
Added: February 5, 2020

2009 journal article

Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat

Limnology and Oceanography, 54(6), 1981–1994.

By: I. Hewson*, R. Paerl*, H. Tripp*, J. Zehr* & D. Karl*

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: February 5, 2020

2008 journal article

Phylogenetic diversity of cyanobacterial narB genes from various marine habitats

Environmental Microbiology, 10(12), 3377–3387.

co-author countries: United States of America 🇺🇸
MeSH headings : Atlantic Ocean; Bacterial Proteins / genetics; Cluster Analysis; Cyanobacteria / classification; Cyanobacteria / isolation & purification; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; DNA, Ribosomal Spacer; Genes, rRNA; Molecular Sequence Data; Nitrate Reductase / genetics; Pacific Ocean; Phylogeny; Polymorphism, Genetic; RNA, Bacterial / genetics; RNA, Ribosomal, 16S / genetics; Seawater / microbiology; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid
Sources: Crossref, ORCID
Added: February 6, 2020