Ryan Sartor

Works (4)

Updated: April 3rd, 2024 21:01

2020 journal article

Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns

ELIFE, 9.

By: K. Greenham *, R. Sartor n, S. Zorich *, P. Lou *, T. Mockler * & C. McClung *

MeSH headings : Brassica rapa / genetics; Brassica rapa / metabolism; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Genome, Plant / physiology; Stress, Physiological; Transcriptome / genetics; Transcriptome / physiology
TL;DR: This study aimed to resolve the circadian transcriptome in the polyploid crop Brassica rapa and explore the fate of multicopy orthologs of Arabidopsis circadian regulated genes and developed a new method for comparing gene expression patterns. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: December 11, 2020

2020 journal article

Genetic and genomic resources to study natural variation in Brassica rapa

PLANT DIRECT, 4(12).

By: P. Lou *, S. Woody *, K. Greenham *, R. VanBuren *, M. Colle *, P. Edger *, R. Sartor n, Y. Zheng * ...

author keywords: Advanced-Intercross Recombinant Inbred Lines; Brassica rapa; natural variation; Quantitative Trait Loci; seed coat color
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: February 1, 2021

2019 journal article

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

By: E. Slabaugh n, J. Desai n, R. Sartor n, L. Lawas *, S. Krishna Jagadish * & C. Doherty n 

author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
MeSH headings : Alternative Splicing; Base Sequence; Chromosome Mapping / methods; Gene Expression Profiling / standards; Genes, Essential; Genome, Plant; High-Throughput Nucleotide Sequencing; Oryza / classification; Oryza / genetics; Oryza / metabolism; Polymorphism, Single Nucleotide; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reference Standards; Sequence Alignment; Transcriptome
TL;DR: It is concluded that even between two closely related genomes of similar quality, using the reference genome that is most closely related to the species being sampled significantly improves transcriptome analysis. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 4, 2019

2018 journal article

Murine Adherent and Invasive E. coli Induces Chronic Inflammation and Immune Responses in the Small and Large Intestines of Monoassociated IL-10(-/-) Mice Independent of Long Polar Fimbriae Adhesin

INFLAMMATORY BOWEL DISEASES, 25(5), 875–885.

By: J. Schmitz n, S. Tonkonogy n, B. Dogan *, A. Leblond n, K. Whitehead  n, S. Kim n, K. Simpson *, R. Sartor  n

author keywords: ileitis; colitis; cytokines; T cells; adherent invasive E. coli
MeSH headings : Animals; Bacterial Adhesion; Escherichia coli / immunology; Escherichia coli Infections / immunology; Escherichia coli Infections / metabolism; Escherichia coli Infections / microbiology; Escherichia coli Infections / pathology; Escherichia coli Proteins / metabolism; Fimbriae Proteins / metabolism; Fimbriae, Bacterial / immunology; Fimbriae, Bacterial / pathology; Inflammation / etiology; Inflammation / metabolism; Inflammation / pathology; Interleukin-10 / physiology; Intestine, Large / immunology; Intestine, Large / metabolism; Intestine, Large / microbiology; Intestine, Large / pathology; Intestine, Small / immunology; Intestine, Small / metabolism; Intestine, Small / microbiology; Intestine, Small / pathology; Mice; Mice, Knockout
TL;DR: Mice monoassociated with murine AIEC irrespective of LpfA expression developed chronic inflammation accompanied by IL-12/23 p40 production in the small and large intestines and IFN-γ/IL-17 production by CD4 T cells that model the interplay between enteric pathosymbionts, host susceptibility, and enhanced immune responses in people with IBD. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Web Of Science
Added: July 15, 2019

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