Works (4)

Updated: July 5th, 2023 15:22

2020 journal article

Expansion of the circadian transcriptome in Brassica rapa and genome-wide diversification of paralog expression patterns


MeSH headings : Brassica rapa / genetics; Brassica rapa / metabolism; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Genome, Plant / physiology; Stress, Physiological; Transcriptome / genetics; Transcriptome / physiology
Source: Web Of Science
Added: December 11, 2020

2020 journal article

Genetic and genomic resources to study natural variation in Brassica rapa


By: P. Lou*, S. Woody*, K. Greenham*, R. VanBuren*, M. Colle*, P. Edger*, R. Sartor n, Y. Zheng* ...

author keywords: Advanced-Intercross Recombinant Inbred Lines; Brassica rapa; natural variation; Quantitative Trait Loci; seed coat color
Source: Web Of Science
Added: February 1, 2021

2019 journal article

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

By: E. Slabaugh n, J. Desai n, R. Sartor n, L. Lawas*, S. Krishna Jagadish* & C. Doherty n

author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
MeSH headings : Alternative Splicing; Base Sequence; Chromosome Mapping / methods; Gene Expression Profiling / standards; Genes, Essential; Genome, Plant; High-Throughput Nucleotide Sequencing; Oryza / classification; Oryza / genetics; Oryza / metabolism; Polymorphism, Single Nucleotide; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reference Standards; Sequence Alignment; Transcriptome
Sources: Web Of Science, ORCID
Added: June 4, 2019

2019 journal article

Murine Adherent and Invasive E. coli Induces Chronic Inflammation and Immune Responses in the Small and Large Intestines of Monoassociated IL-10(-/-) Mice Independent of Long Polar Fimbriae Adhesin


By: J. Schmitz n, S. Tonkonogy n, B. Dogan*, A. Leblond n, K. Whitehead n, S. Kim n, K. Simpson*, R. Sartor n

author keywords: ileitis; colitis; cytokines; T cells; adherent invasive E. coli
MeSH headings : Animals; Bacterial Adhesion; Escherichia coli / immunology; Escherichia coli Infections / immunology; Escherichia coli Infections / metabolism; Escherichia coli Infections / microbiology; Escherichia coli Infections / pathology; Escherichia coli Proteins / metabolism; Fimbriae Proteins / metabolism; Fimbriae, Bacterial / immunology; Fimbriae, Bacterial / pathology; Inflammation / etiology; Inflammation / metabolism; Inflammation / pathology; Interleukin-10 / physiology; Intestine, Large / immunology; Intestine, Large / metabolism; Intestine, Large / microbiology; Intestine, Large / pathology; Intestine, Small / immunology; Intestine, Small / metabolism; Intestine, Small / microbiology; Intestine, Small / pathology; Mice; Mice, Knockout
Source: Web Of Science
Added: July 15, 2019