@article{hou_korn_melo-filho_wright_tropsha_chirkova_2022, title={Compact Walks: Taming Knowledge-Graph Embeddings With Domain- and Task-Specific Pathways}, ISSN={["0730-8078"]}, DOI={10.1145/3514221.3517903}, journal={PROCEEDINGS OF THE 2022 INTERNATIONAL CONFERENCE ON MANAGEMENT OF DATA (SIGMOD '22)}, author={Hou, Pei-Yu and Korn, Daniel R. and Melo-Filho, Cleber C. and Wright, David R. and Tropsha, Alexander and Chirkova, Rada}, year={2022}, pages={458–469} }
 @misc{korn_thieme_alves_yeakey_borba_capuzzi_fecho_bizon_edwards_chirkova_et al._2022, title={Defining clinical outcome pathways}, volume={27}, ISSN={["1878-5832"]}, DOI={10.1016/j.drudis.2022.02.008}, number={6}, journal={DRUG DISCOVERY TODAY}, author={Korn, Daniel and Thieme, Andrew J. and Alves, Vinicius M. and Yeakey, Michael and Borba, Joyce V. V. B. and Capuzzi, Stephen J. and Fecho, Karamarie and Bizon, Chris and Edwards, Stephen W. and Chirkova, Rada and et al.}, year={2022}, month={Jun}, pages={1671–1678} }
 @misc{alves_korn_pervitsky_thieme_capuzzi_baker_chirkova_ekins_muratov_hickey_et al._2022, title={Knowledge-based approaches to drug discovery for rare diseases}, volume={27}, ISSN={["1878-5832"]}, DOI={10.1016/j.drudis.2021.10.014}, number={2}, journal={DRUG DISCOVERY TODAY}, author={Alves, Vinicius M. and Korn, Daniel and Pervitsky, Vera and Thieme, Andrew and Capuzzi, Stephen J. and Baker, Nancy and Chirkova, Rada and Ekins, Sean and Muratov, Eugene N. and Hickey, Anthony and et al.}, year={2022}, month={Feb}, pages={490–502} }
 @article{korn_pervitsky_bobrowski_alves_schmitt_bizon_baker_chirkova_cherkasov_muratov_et al._2021, title={COVID-19 Knowledge Extractor (COKE): A Curated Repository of Drug-Target Associations Extracted from the CORD-19 Corpus of Scientific Publications on COVID-19}, volume={61}, ISSN={["1549-960X"]}, DOI={10.1021/acs.jcim.1c01285}, number={12}, journal={JOURNAL OF CHEMICAL INFORMATION AND MODELING}, author={Korn, Daniel and Pervitsky, Vera and Bobrowski, Tesia and Alves, Vinicius M. and Schmitt, Charles and Bizon, Chris and Baker, Nancy and Chirkova, Rada and Cherkasov, Artem and Muratov, Eugene and et al.}, year={2021}, month={Dec}, pages={5734–5741} }
 @article{korn_bobrowski_li_kebede_wang_owen_vaidya_muratov_chirkova_bizon_et al._2021, title={COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database}, volume={37}, ISSN={["1460-2059"]}, DOI={10.1093/bioinformatics/btaa718}, number={4}, journal={BIOINFORMATICS}, author={Korn, Daniel and Bobrowski, Tesia and Li, Michael and Kebede, Yaphet and Wang, Patrick and Owen, Phillips and Vaidya, Gaurav and Muratov, Eugene and Chirkova, Rada and Bizon, Chris and et al.}, year={2021}, month={Feb}, pages={586–587} }
 @article{chirkova_doyle_reutter_2021, title={Ensuring Data Readiness for Quality Requirements with Help from Procedure Reuse}, volume={13}, ISSN={["1936-1955"]}, DOI={10.1145/3428154}, number={3}, journal={ACM JOURNAL OF DATA AND INFORMATION QUALITY}, author={Chirkova, Rada and Doyle, Jon and Reutter, Juan}, year={2021}, month={Sep} }
 @article{schatz_melo-filho_tropsha_chirkova_2021, title={Explaining Drug-Discovery Hypotheses Using Knowledge-Graph Patterns}, ISSN={["2639-1589"]}, DOI={10.1109/BigData52589.2021.9672006}, journal={2021 IEEE INTERNATIONAL CONFERENCE ON BIG DATA (BIG DATA)}, author={Schatz, Kara and Melo-Filho, Cleber and Tropsha, Alexander and Chirkova, Rada}, year={2021}, pages={3709–3716} }
 @article{moon_jin_dong_abrar_zheng_chirkova_tropsha_2021, title={Original Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses}, volume={119}, ISSN={["1532-0480"]}, DOI={10.1016/j.jbi.2021.103838}, journal={JOURNAL OF BIOMEDICAL INFORMATICS}, author={Moon, Changsung and Jin, Chunming and Dong, Xialan and Abrar, Saad and Zheng, Weifan and Chirkova, Rada Y. and Tropsha, Alexander}, year={2021}, month={Jul} }
 @article{ao_dinakaran_yang_wright_chirkova_2021, title={Trustworthy Knowledge Graph Population From Texts for Domain Query Answering}, ISSN={["2639-1589"]}, DOI={10.1109/BigData52589.2021.9671514}, journal={2021 IEEE INTERNATIONAL CONFERENCE ON BIG DATA (BIG DATA)}, author={Ao, Jing and Dinakaran, Swathi and Yang, Hungjian and Wright, David and Chirkova, Rada}, year={2021}, pages={4590–4599} }
 @book{afrati_chirkova_2019, place={San Rafael, CA}, title={Answering queries using views}, ISBN={1681734648 9781681734644 1681734621 9781681734620}, publisher={Morgan & Claypool Publishers}, author={Afrati, Foto and Chirkova, Rada}, year={2019} }
 @article{jiang_chirkova_doyle_rosenthal_2018, title={Poster: Towards Greater Expressiveness, Flexibility, and Uniformity in Access Control}, ISBN={978-1-4503-5666-4}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-85049303993&partnerID=MN8TOARS}, DOI={10.1145/3205977.3208950}, journal={SACMAT'18: PROCEEDINGS OF THE 23RD ACM SYMPOSIUM ON ACCESS CONTROL MODELS & TECHNOLOGIES}, author={Jiang, Jiaming and Chirkova, Rada and Doyle, Jon and Rosenthal, Arnon}, year={2018}, pages={217–219} }
 @inbook{chen_yu_chirkova_2017, title={Differentially Private K-Skyband Query Answering Through Adaptive Spatial Decomposition}, ISBN={9783319611754 9783319611761}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-61176-1_8}, DOI={10.1007/978-3-319-61176-1_8}, booktitle={Data and Applications Security and Privacy XXXI}, publisher={Springer International Publishing}, author={Chen, Ling and Yu, Ting and Chirkova, Rada}, year={2017}, pages={142–163} }
 @inproceedings{tan_chirkova_gadepally_mattson_2017, title={Enabling query processing across heterogeneous data models: A survey}, DOI={10.1109/bigdata.2017.8258302}, booktitle={2017 IEEE International Conference on Big Data (Big Data)}, author={Tan, R. and Chirkova, R. and Gadepally, V. and Mattson, T. G.}, year={2017}, pages={3211–3220} }
 @inproceedings{chirkova_yu_2017, title={Exact Detection of Information Leakage: Decidability and Complexity}, volume={10420}, ISBN={0}, DOI={10.1007/978-3-662-55608-5_1}, booktitle={TRANSACTIONS ON LARGE-SCALE DATA- AND KNOWLEDGE-CENTERED SYSTEMS XXXII}, author={Chirkova, Rada and Yu, Ting}, year={2017}, pages={1–23} }
 @article{chirkova_2016, title={Combined-semantics equivalence of conjunctive queries: Decidability and tractability results}, volume={82}, ISSN={0022-0000}, url={http://dx.doi.org/10.1016/J.JCSS.2015.11.001}, DOI={10.1016/J.JCSS.2015.11.001}, number={3}, journal={Journal of Computer and System Sciences}, publisher={Elsevier BV}, author={Chirkova, Rada}, year={2016}, month={May}, pages={395–465} }
 @inbook{harenberg_seay_bello_chirkova_doraiswamy_samatova_2016, title={Knowledge-Guided Maximal Clique Enumeration}, ISBN={9783319495859 9783319495866}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-49586-6_43}, DOI={10.1007/978-3-319-49586-6_43}, booktitle={Advanced Data Mining and Applications}, publisher={Springer International Publishing}, author={Harenberg, Steve and Seay, Ramona G. and Bello, Gonzalo A. and Chirkova, Rada Y. and Doraiswamy, P. Murali and Samatova, Nagiza F.}, year={2016}, pages={604–618} }
 @inproceedings{chen_yu_chirkova_2016, title={Privacy-preserving two-party skyline queries over horizontally partitioned data}, volume={9895}, DOI={10.1007/978-3-319-45931-8_12}, booktitle={Information security theory and practice, wistp 2016}, author={Chen, L. and Yu, T. and Chirkova, R.}, year={2016}, pages={187–203} }
 @inproceedings{lauren_pigg_2016, title={Toward entrepreneurial pedagogies: rethinking professional networking as knowledge making}, DOI={10.1109/ipcc.2016.7740535}, booktitle={2016 ieee international professional communication conference (ipcc)}, author={Lauren, B. and Pigg, S.}, year={2016} }
 @inbook{alborzi_chirkova_doyle_fathi_2015, title={Determining Query Readiness for Structured Data}, volume={9263}, ISBN={9783319227283 9783319227290}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-319-22729-0_1}, DOI={10.1007/978-3-319-22729-0_1}, booktitle={Big Data Analytics and Knowledge Discovery}, publisher={Springer International Publishing}, author={Alborzi, Farid and Chirkova, Rada and Doyle, Jon and Fathi, Yahya}, year={2015}, pages={3–14} }
 @inproceedings{alborzi_chirkova_doyle_fathi_2015, title={Determining query readiness for structured data}, volume={9263}, booktitle={Big data analytics and knowledge discovery}, author={Alborzi, F. and Chirkova, R. and Doyle, J. and Fathi, Y.}, year={2015}, pages={3–14} }
 @inproceedings{alborzi_chirkova_yu_2015, title={Exact detection of information leakage in database access control}, volume={9263}, DOI={10.1007/978-3-319-22729-0_31}, booktitle={Big data analytics and knowledge discovery}, author={Alborzi, F. and Chirkova, R. and Yu, T.}, year={2015}, pages={403–415} }
 @article{chirkova_2014, title={Combined-semantics equivalence and minimization of conjunctive queries}, volume={57}, DOI={10.1093/comjnl/bxt032}, number={5}, journal={Computer Journal}, author={Chirkova, R.}, year={2014}, pages={775–795} }
 @article{asgharzadeh talebi_chirkova_fathi_2013, title={An integer programming approach for the view and index selection problem}, volume={83}, ISSN={0169-023X}, url={http://dx.doi.org/10.1016/j.datak.2012.11.001}, DOI={10.1016/j.datak.2012.11.001}, journal={Data & Knowledge Engineering}, publisher={Elsevier BV}, author={Asgharzadeh Talebi, Zohreh and Chirkova, Rada and Fathi, Yahya}, year={2013}, month={Jan}, pages={111–125} }
 @article{chen_chirkova_sadri_salo_2013, title={Query optimization in information integration}, volume={50}, ISSN={0001-5903 1432-0525}, url={http://dx.doi.org/10.1007/S00236-013-0179-1}, DOI={10.1007/S00236-013-0179-1}, number={4}, journal={Acta Informatica}, publisher={Springer Science and Business Media LLC}, author={Chen, Dongfeng and Chirkova, Rada and Sadri, Fereidoon and Salo, Tiia J.}, year={2013}, month={Apr}, pages={257–287} }
 @inbook{huang_chirkova_fathi_2013, title={Two-Stage Stochastic View Selection for Data-Analysis Queries}, ISBN={9783642327407 9783642327414}, ISSN={2194-5357 2194-5365}, url={http://dx.doi.org/10.1007/978-3-642-32741-4_11}, DOI={10.1007/978-3-642-32741-4_11}, booktitle={Advances in Intelligent Systems and Computing}, publisher={Springer Berlin Heidelberg}, author={Huang, Rong and Chirkova, Rada and Fathi, Yahya}, year={2013}, pages={115–123} }
 @inbook{huang_chirkova_fathi_2012, title={Deterministic View Selection for Data-Analysis Queries: Properties and Algorithms}, ISBN={9783642330735 9783642330742}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-33074-2_15}, DOI={10.1007/978-3-642-33074-2_15}, booktitle={Advances in Databases and Information Systems}, publisher={Springer Berlin Heidelberg}, author={Huang, Rong and Chirkova, Rada and Fathi, Yahya}, year={2012}, pages={195–208} }
 @book{chirkova_yang_2012, title={Materialized views}, publisher={Boston, [Massachusetts]: now Pub.}, author={Chirkova, R. and Yang, J.}, year={2012} }
 @article{chirkova_libkin_reutter_2012, title={Tractable XML data exchange via relations}, volume={6}, DOI={10.1007/s11704-012-2023-0}, number={3}, journal={Frontiers of Computer Science}, author={Chirkova, R. and Libkin, L. and Reutter, J. L.}, year={2012}, pages={243–263} }
 @article{afrati_chirkova_2011, title={Selecting and using views to compute aggregate queries}, volume={77}, DOI={10.1016/j.jcss.2010.10.003}, number={6}, journal={Journal of Computer and System Sciences}, author={Afrati, F. and Chirkova, R.}, year={2011}, pages={1079–1107} }
 @inbook{afrati_chandrachud_chirkova_mitra_2009, title={Approximate Rewriting of Queries Using Views}, ISBN={9783642039720 9783642039737}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-03973-7_13}, DOI={10.1007/978-3-642-03973-7_13}, booktitle={Advances in Databases and Information Systems}, publisher={Springer Berlin Heidelberg}, author={Afrati, Foto and Chandrachud, Manik and Chirkova, Rada and Mitra, Prasenjit}, year={2009}, pages={164–178} }
 @article{chen_chirkova_sadri_2009, title={Query optimization using restructured views: Theory and experiments}, volume={34}, DOI={10.1016/j.is.2008.10.002}, number={3}, journal={Information Systems}, author={Chen, D. F. and Chirkova, R. and Sadri, F.}, year={2009}, pages={353–370} }
 @inbook{kormilitsin_chirkova_fathi_stallmann_2009, title={Systematic Exploration of Efficient Query Plans for Automated Database Restructuring}, ISBN={9783642039720 9783642039737}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-642-03973-7_11}, DOI={10.1007/978-3-642-03973-7_11}, booktitle={Advances in Databases and Information Systems}, publisher={Springer Berlin Heidelberg}, author={Kormilitsin, Maxim and Chirkova, Rada and Fathi, Yahya and Stallmann, Matthias}, year={2009}, pages={133–148} }
 @misc{gou_chirkova_2007, title={Efficiently querying large XML data repositories: A survey}, volume={19}, DOI={10.1109/tkde.2007.1060}, number={10}, journal={IEEE Transactions on Knowledge and Data Engineering}, author={Gou, G. and Chirkova, R.}, year={2007}, pages={1381–1403} }
 @article{afrati_chirkova_gergatsoulis_pavlaki_2007, title={View selection for real conjunctive queries}, volume={44}, DOI={10.1007/s00236-007-0046-z}, number={5}, journal={Acta Informatica}, author={Afrati, F. and Chirkova, R. and Gergatsoulis, M. and Pavlaki, V.}, year={2007}, pages={289–321} }
 @article{chirkova_li_li_2006, title={Answering queries using materialized views with minimum size}, volume={15}, DOI={10.1007/s00778-005-0162-8}, number={3}, journal={VLDB Journal : the International Journal on Very Large Data Bases}, author={Chirkova, R. and Li, C. and Li, J.}, year={2006}, pages={191–210} }
 @inbook{afrati_chirkova_gergatsoulis_pavlaki_2006, title={Finding equivalent rewritings in the presence of arithmetic comparisons}, volume={3896}, DOI={10.1007/11687238_55}, booktitle={Advances in database technology :
EDBT 2006 : 10th International Conference on Extending Database Technology, Munich, Germany, March 26-31, 2006: Proceedings (Lecture notes in computer science; 3896)}, publisher={Berlin: Springer}, author={Afrati, F. and Chirkova, R. and Gergatsoulis, M. and Pavlaki, V.}, year={2006}, pages={942–960} }
 @inbook{li_talebi_chirkova_fathi_2005, title={A Formal Model for the Problem of View Selection for Aggregate Queries}, ISBN={9783540285854 9783540318958}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/11547686_10}, DOI={10.1007/11547686_10}, booktitle={Advances in Databases and Information Systems}, publisher={Springer Berlin Heidelberg}, author={Li, Jingni and Talebi, Zohreh Asgharzadeh and Chirkova, Rada and Fathi, Yahya}, year={2005}, pages={125–138} }
 @inbook{afrati_chirkova_gupta_loftis_2005, title={Designing and using views to improve performance of aggregate queries (extended abstract)}, volume={3453}, ISBN={3540253343}, DOI={10.1007/11408079_48}, booktitle={Database systems for advanced applications: 10th international conference, DASFAA 2005, Beijing, China, April 17-20, 2005: Proceedings (Lecture notes in computer science ; 3454)}, publisher={Berlin; New York: Springer}, author={Afrati, F. and Chirkova, R. and Gupta, S. and Loftis, C.}, editor={L. Zhou, B.C. Ooi and Meng, X.Editors}, year={2005}, pages={548–554} }
 @inbook{afrati_chirkova_gergatsoulis_pavlaki_2005, title={Designing views to efficiently answer real SQL queries}, volume={3607}, ISBN={3540278729}, DOI={10.1007/11527862_26}, booktitle={Abstraction, reformulation and approximation: 6th international symposium, SARA 2005, Airth Castle, Scotland, UK, July 26-29, 2005: proceedings
(Lecture notes in computer science, Lecture notes in artificial intelligence; 3607)}, publisher={Berlin; New York: Springer}, author={Afrati, F. and Chirkova, R. and Gergatsoulis, M. and Pavlaki, V.}, editor={J-D. Zucker and Saitta, L.Editors}, year={2005}, pages={332–346} }
 @inbook{afrati_chirkova_2005, title={Selecting and using views to compute aggregate queries (extended abstract)}, volume={3363}, ISBN={3540242880}, DOI={10.1007/978-3-540-30570-5_26}, booktitle={Database theory: ICDT 2005, 10th international conference, Edinburgh, UK, January 5-7, 2005: Proceedings (Lecture notes in computer science ; 3363)}, publisher={Berlin; New York: Springer}, author={Afrati, F. and Chirkova, R.}, editor={T. Eiter and Libkin, L.Editors}, year={2005}, pages={383–397} }
 @inbook{petrie_genesereth_bjornsson_chirkova_ekstrom_gomi_hinrichs_hoskins_kassoff_kato_et al._2004, title={Adding AI to Web Services}, ISBN={9783540208686 9783540246121}, ISSN={0302-9743 1611-3349}, url={http://dx.doi.org/10.1007/978-3-540-24612-1_23}, DOI={10.1007/978-3-540-24612-1_23}, booktitle={Agent-Mediated Knowledge Management}, publisher={Springer Berlin Heidelberg}, author={Petrie, Charles and Genesereth, Michael and Bjornsson, Hans and Chirkova, Rada and Ekstrom, Martin and Gomi, Hidehito and Hinrichs, Tim and Hoskins, Rob and Kassoff, Michael and Kato, Daishi and et al.}, year={2004}, pages={322–338} }
 @article{bilgin_chirkova_salo_singh_2004, title={Deriving efficient SQL sequences via read-aheads}, volume={3181}, ISBN={354022937X}, url={https://publons.com/publon/21294482/}, DOI={10.1007/978-3-540-30076-2_30}, journal={Lecture Notes in Computer Science}, publisher={Berlin; New York: Springer}, author={Bilgin, A. S. and Chirkova, R. Y. and Salo, T. J. and Singh, Munindar P.}, year={2004}, pages={299–308} }
 @inbook{shah_chirkova_2003, title={Improving query performance using materialized XML views: A learning-based approach}, volume={2814}, ISBN={3540202579}, DOI={10.1007/978-3-540-39597-3_30}, booktitle={Conceptual modeling for novel application domains: ER 2003 workshops ECOMO, IWCMQ, AOIS, and XSDM, Chicago, IL, USA, October
13, 2003: proceedings / Manfred Jeusfeld;  Oscar Pastor (eds.). New York: Springer-Verlag, 2003. (Lecture notes in computer science ; 2814).}, publisher={Berlin; New York: Springer}, author={Shah, A. and Chirkova, R.}, year={2003}, pages={297–310} }