Steffen Heber

Computer Science

Works (21)

2019 | article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC GENOMICS.

By: P. Perkins, S. Mazzoni-Putman, A. Stepanova, J. Alonso & S. Heber

Source: Web Of Science

2017 | journal article

Disruption of Trim9 function abrogates macrophage motility in vivo

Journal of Leukocyte Biology, 102(6), 1371–1380.

By: D. Tokarz, A. Heffelfinger, D. Jima, J. Gerlach, R. Shah, I. Rodriguez-Nunez, A. Kortum, A. Fletcher ...

Sources: NC State University Libraries, ORCID

2017 | conference paper

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

In International conference on computational advances in bio and medical.

By: P. Perkins & S. Heber

Source: NC State University Libraries

2016 | journal article

Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2016 | journal article

Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain.

Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. Plant Physiology, 171(1), 42–61.

By: G. Villarino, Q. Hu, S. Manrique, M. Flores-Vergara, B. Sehra, L. Robles, J. Brumos, A. Stepanova ...

Sources: ORCID, NC State University Libraries

2015 | journal article

Gene-specific translation regulation mediated by the hormone-signaling molecule EIN2

Cell, 163(3), 684–697.

By: C. Merchante, J. Brumos, J. Yun, Q. Hu, K. Spencer, P. Enriquez, B. Binder, S. Heber, A. Stepanova, J. Alonso

Source: NC State University Libraries

2015 | conference paper

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

In International conference on computational advances in bio and medical.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2015 | conference paper

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

In Bioinformatics research and applications (isbra 2015) (Vol. 9096, pp. 138–149).

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2014 | journal article

Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins

Neuron (Cambridge, Mass.), 84(2), 386–398.

By: D. Schreiner, T. Nguyen, G. Russo, S. Heber, A. Patrignani, E. Ahrne, P. Scheiffele

Source: NC State University Libraries

2013 | journal article

High-throughput RNA sequencing of pseudomonas-infected arabidopsis reveals hidden transcriptome complexity and novel splice variants

PLoS One, 8(10).

By: B. Howard, Q. Hu, A. Babaoglu, M. Chandra, M. Borghi, X. Tan, L. He, H. Winter-Sederoff ...

Source: NC State University Libraries

2011 | journal article

Common intervals of multiple permutations

Algorithmica, 60(2), 175–206.

By: S. Heber, R. Mayr & J. Stoye

Source: NC State University Libraries

2010 | review

Towards a systems approach for lignin biosynthesis in populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes

Plant and Cell Physiology.

By: R. Shi, Y. Sun, Q. Li, S. Heber, R. Sederoff & V. Chiang

Source: NC State University Libraries

2010 | conference paper

Towards reliable isoform quantification using RNA-SEQ data

In BMC Bioinformatics (Vol. 11).

By: B. Howard & S. Heber

Source: NC State University Libraries

2009 | journal article

Unsupervised assessment of microarray data quality using a Gaussian mixture model

BMC Bioinformatics, 10.

By: B. Howard, B. Sick & S. Heber

Source: NC State University Libraries

2009 | journal article

The deep evolution of metazoan microRNAs

Evolution & Development, 11(1), 50–68.

By: B. Wheeler, A. Heimberg, V. Moy, E. Sperling, T. Holstein, S. Heber, K. Peterson

Source: NC State University Libraries

2007 | journal article

Correcting base-assignment errors in repeat regions of shotgun assembly

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4(1), 54–64.

By: D. Zhi, U. Keich, P. Pevzner, S. Heber & H. Tang

Source: NC State University Libraries

2007 | journal article

Non-monotonic dose-response relationship in steroid hormone receptor-mediated gene expression

Journal of Molecular Endocrinology, 38(5-6), 569–585.

By: L. Li, M. Andersen, S. Heber & Q. Zhang

Source: NC State University Libraries

2006 | journal article

Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry

Journal of Mass Spectrometry, 41(3), 281–288.

By: J. Frahm, B. Howard, S. Heber & D. Muddiman

Source: NC State University Libraries

2005 | journal article

Common intervals of trees

Information Processing Letters, 93(2), 69–74.

By: S. Heber & C. Savage

Source: NC State University Libraries

2005 | journal article

RACE: Remote Analysis Computation for gene Expression data

Nucleic Acids Research, 33, W638–643.

By: M. Psarros, S. Heber, M. Sick, G. Thoppae, K. Harshman & B. Sick

Source: NC State University Libraries

2004 | journal article

The alternative splicing gallery (ASG): bridging the gap between genome and transcriptome

Nucleic Acids Research, 32(13), 3977–3983.

By: J. Leipzig, P. Pevzner & S. Heber

Source: NC State University Libraries