Steffen Heber

Recruitment of bifunctional regulator thermospermine to methylated ribosomes directs xylem fate

Ko, D., Ruonala, R., Faille, A., Hellmann, E., Help, H., Liu, H., … Helariutta, Y. (2026, February 12). Science.

PeakPass: Automating ChIP-Seq Blacklist Creation

Wimberley, C. E., & Heber, S. (2019, January 1). Lecture Notes in Computer Science, Vol. 11490, pp. 232–243.

PeakPass: Automating ChIP-Seq Blacklist Creation

Wimberley, C. E., & Heber, S. (2019, December 19). Journal of Computational Biology, Vol. 27, pp. 259–268.

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC Genomics, 20(S5).

Disruption of Trim9 function abrogates macrophage motility in vivo

Journal of Leukocyte Biology, 102(6), 1371–1380.

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

Perkins, P., & Heber, S. (2017, October 1). International Conference on Computational Advances in Bio and Medical.

Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain

Plant Physiology, 171(1), 42–61.

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

Bioinformatics research and applications (isbra 2015), 9096, 138–149.

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

Cell, 163(3), 684–697.

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

Hu, N. Q., Merchante, C., Stepanova, A. N., Alonso, J. M., & Heber, S. (2015, October 1). International Conference on Computational Advances in Bio and Medical.

Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins

Schreiner, D., Nguyen, T.-M., Russo, G., Heber, S., Patrignani, A., Ahrné, E., & Scheiffele, P. (2014, October 1). Neuron, Vol. 84, pp. 386–398.

High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants

Howard, B. E., Hu, Q., Babaoglu, A. C., Chandra, M., Borghi, M., Tan, X., … Heber, S. (2013, October 1). PLoS ONE, Vol. 8.

Detection of Alternative Splice Variants at the Proteome Level in Aspergillus flavus

Journal of Proteome Research, 9(3), 1209–1217.

Towards reliable isoform quantification using RNA-SEQ data

Howard, B. E., & Heber, S. (2010, April 1). BMC Bioinformatics, Vol. 11.

Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates

In Bioinformatics Research and Applications (pp. 272–283).

Common Intervals of Multiple Permutations

Heber, S., Mayr, R., & Stoye, J. (2009, June 23). Algorithmica, Vol. 60, pp. 175–206.

Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing

In Bioinformatics Research and Applications (pp. 260–271).

Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression

In Bioinformatics Research and Applications (pp. 18–27).

The deep evolution of metazoan microRNAs

Wheeler, B. M., Heimberg, A. M., Moy, V. N., Sperling, E. A., Holstein, T. W., Heber, S., & Peterson, K. J. (2009, January 1). Evolution & Development, Vol. 11, pp. 50–68.

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

Shi, R., Sun, Y.-H., Li, Q., Heber, S., Sederoff, R., & Chiang, V. L. (2009, December 8). Plant and Cell Physiology, Vol. 51, pp. 144–163.

Unsupervised assessment of microarray data quality using a Gaussian mixture model

Howard, B. E., Sick, B., & Heber, S. (2009, June 22). BMC Bioinformatics, Vol. 10.

Developmental surface and phonological dysgraphia in German 3rd graders

Reading and Writing, 23(1), 97–127.

Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly

Zhi, D., Keich, U., Pevzner, P., Heber, S., & Tang, H. (2007, January 1). IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 4, pp. 54–64.

Non-monotonic dose–response relationship in steroid hormone receptor-mediated gene expression

Li, L., Andersen, M. E., Heber, S., & Zhang, Q. (2007, May 1). Journal of Molecular Endocrinology, Vol. 38, pp. 569–585.

Accessible proteomics space and its implications for peak capacity for zero‐, one‐ and two‐dimensional separations coupled with FT‐ICR and TOF mass spectrometry

Frahm, J. L., Howard, B. E., Heber, S., & Muddiman, D. C. (2006, March 1). Journal of Mass Spectrometry, Vol. 41, pp. 281–288.

Common intervals of trees

Heber, S., & Savage, C. D. (2005, January 1). Information Processing Letters, Vol. 93, pp. 69–74.

RACE: Remote Analysis Computation for gene Expression data

Psarros, M., Heber, S., Sick, M., Thoppae, G., Harshman, K., & Sick, B. (2005, June 26). Nucleic Acids Research, Vol. 33, pp. W638–643.

The alternative splicing gallery (ASG): bridging the gap between genome and transcriptome

Nucleic Acids Research, Vol. 32, pp. 3977–3983.

Finding All Common Intervals of k Permutations

In Combinatorial Pattern Matching (pp. 207–218).