Steffen Heber

Works (22)

2019 article

PeakPass: Automating ChIP-Seq Blacklist Creation

BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2019.

By: C. Wimberley & S. Heber

Source: Web Of Science
Added: November 4, 2019

2019 article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC GENOMICS.

By: P. Perkins, S. Mazzoni-Putman, A. Stepanova, J. Alonso & S. Heber

Source: Web Of Science
Added: July 1, 2019

2017 journal article

Disruption of Trim9 function abrogates macrophage motility in vivo

Journal of Leukocyte Biology, 102(6), 1371–1380.

By: D. Tokarz, A. Heffelfinger, D. Jima, J. Gerlach, R. Shah, I. Rodriguez-Nunez, A. Kortum, A. Fletcher ...

Source: NC State University Libraries
Added: August 6, 2018

2017 conference paper

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data

In International conference on computational advances in bio and medical.

By: P. Perkins & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

Transcriptomic signature of the SHATTERPROOF2 expression domain reveals the meristematic nature of Arabidopsis gynoecial medial domain

Plant Physiology, 171(1), 42–61.

By: G. Villarino, Q. Hu, S. Manrique, M. Flores-Vergara, B. Sehra, L. Robles, J. Brumos, A. Stepanova ...

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

In Bioinformatics research and applications (isbra 2015) (Vol. 9096, pp. 138–149).

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Gene-specific translation regulation mediated by the hormone-signaling molecule EIN2

Cell, 163(3), 684–697.

By: C. Merchante, J. Brumos, J. Yun, Q. Hu, K. Spencer, P. Enriquez, B. Binder, S. Heber, A. Stepanova, J. Alonso

Source: NC State University Libraries
Added: August 6, 2018

2015 conference paper

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

In International conference on computational advances in bio and medical.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins

Neuron (Cambridge, Mass.), 84(2), 386–398.

By: D. Schreiner, T. Nguyen, G. Russo, S. Heber, A. Patrignani, E. Ahrne, P. Scheiffele

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

High-throughput RNA sequencing of pseudomonas-infected arabidopsis reveals hidden transcriptome complexity and novel splice variants

PLoS One, 8(10).

By: B. Howard, Q. Hu, A. Babaoglu, M. Chandra, M. Borghi, X. Tan, L. He, H. Winter-Sederoff ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Common intervals of multiple permutations

Algorithmica, 60(2), 175–206.

By: S. Heber, R. Mayr & J. Stoye

Source: NC State University Libraries
Added: August 6, 2018

2010 review

Towards a systems approach for lignin biosynthesis in populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes

Plant and Cell Physiology.

By: R. Shi, Y. Sun, Q. Li, S. Heber, R. Sederoff & V. Chiang

Source: NC State University Libraries
Added: August 6, 2018

2010 conference paper

Towards reliable isoform quantification using RNA-SEQ data

In BMC Bioinformatics (Vol. 11).

By: B. Howard & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

The The deep evolution of metazoan microRNAs

Evolution & Development, 11(1), 50–68.

By: B. Wheeler, A. Heimberg, V. Moy, E. Sperling, T. Holstein, S. Heber, K. Peterson

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Unsupervised assessment of microarray data quality using a Gaussian mixture model

BMC Bioinformatics, 10.

By: B. Howard, B. Sick & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Correcting base-assignment errors in repeat regions of shotgun assembly

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 4(1), 54–64.

By: D. Zhi, U. Keich, P. Pevzner, S. Heber & H. Tang

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Non-monotonic dose-response relationship in steroid hormone receptor-mediated gene expression

Journal of Molecular Endocrinology, 38(5-6), 569–585.

By: L. Li, M. Andersen, S. Heber & Q. Zhang

Source: NC State University Libraries
Added: August 6, 2018

2006 journal article

Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry

Journal of Mass Spectrometry, 41(3), 281–288.

By: J. Frahm, B. Howard, S. Heber & D. Muddiman

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Common intervals of trees

Information Processing Letters, 93(2), 69–74.

By: S. Heber & C. Savage

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

RACE: Remote Analysis Computation for gene Expression data

Nucleic Acids Research, 33, W638–643.

By: M. Psarros, S. Heber, M. Sick, G. Thoppae, K. Harshman & B. Sick

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

The The alternative splicing gallery (ASG): bridging the gap between genome and transcriptome

Nucleic Acids Research, 32(13), 3977–3983.

By: J. Leipzig, P. Pevzner & S. Heber

Source: NC State University Libraries
Added: August 6, 2018