Subodh K Srivastava

Works (6)

Updated: July 5th, 2023 15:34

2022 article

Draft Genome Sequence Resource of AldY-WA1, a Phytoplasma Strain Associated with Alder Yellows of Alnus rubra in Washington, USA

Cai, W., Nunziata, S. O., Srivastava, S. K., Wilson, T., Chambers, N., Rivera, Y., … Costanzo, S. (2022, May 26). PLANT DISEASE.

By: W. Cai n, S. Nunziata*, S. Srivastava n, T. Wilson *, N. Chambers*, Y. Rivera *, M. Nakhla *, S. Costanzo *

author keywords: 16SrV; alder; elm yellows group; genome; phytoplasmas
MeSH headings : Alnus / genetics; DNA, Ribosomal / genetics; Phytoplasma / genetics; RNA, Ribosomal, 16S / genetics; Washington
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
Source: Web Of Science
Added: June 6, 2022

2022 journal article

Genome Resources for the Ex-Type of Phytophthora citricola, and Well-Authenticated Isolates of P. hibernalis, P. nicotianae, and P. syringae

PHYTOPATHOLOGY, 112(4), 953–955.

By: S. Srivastava n, L. Knight n, M. Nakhla * & Z. Abad*

author keywords: bioinformatics; oomycetes; pathogen detection
MeSH headings : High-Throughput Nucleotide Sequencing; Phytophthora / genetics; Plant Diseases
TL;DR: Four draft Phytophthora genomes resources for the Ex-type of P. citricola, nicotianae, syringae and hibernalis are described and it is predicted that these draft genomes will be accommodating for various basic and applied research including diagnostics to protect global agriculture. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: Web Of Science
Added: May 2, 2022

2022 article

IDphy: An International Online Resource for Molecular and Morphological Identification of Phytophthora

Abad, Z. G., Burgess, T. I., Redford, A. J., Bienapfl, J. C., Srivastava, S., Mathew, R., & Jennings, K. (2022, July 28). PLANT DISEASE.

By: Z. Abad*, T. Burgess *, A. Redford, J. Bienapfl*, S. Srivastava n, R. Mathew n, K. Jennings  n

author keywords: barcoding genes; culture collections; genomes; glossary; herbaria collections; lucid key; Phytophthora identification; sequencing analysis; tabular key
MeSH headings : Phytophthora / genetics; Phylogeny; DNA, Ribosomal Spacer / genetics; DNA, Ribosomal / genetics; DNA, Intergenic
TL;DR: The model's effectiveness of the IDphy online resource and the content of this manuscript could inspire other researchers to develop additional identification tools for other important groups of plant pathogens. (via Semantic Scholar)
Source: Web Of Science
Added: June 5, 2023

2021 journal article

Genome Resources of Four Distinct Pathogenic Races Within Fusarium oxysporum f. sp. vasinfectum that Cause Vascular Wilt Disease of Cotton

PHYTOPATHOLOGY, 111(3), 593–596.

By: S. Srivastava n, K. Zeller *, J. Sobieraj n & M. Nakhla *

author keywords: computational biology; fungal pathogens; pathogen detectiondius
MeSH headings : Fusarium / genetics; Phylogeny; Plant Diseases; Quantitative Trait Loci
TL;DR: It is expected that these findings will help in comparative genomics, and in the identification of unique genes as candidate targets for diagnostic marker and methods development to permit rapid differentiation of FOV subgroups. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: April 12, 2021

2020 journal article

Draft Genome Resource for the Ex-types of Phytophthora ramorum, P. kernoviae, and P. melonis, Species of Regulatory Concern, Using Ultra-Long Read MinION Nanopore Sequencing

MOLECULAR PLANT-MICROBE INTERACTIONS, 33(6), 794–797.

By: S. Srivastava n, Z. Abad*, L. Knight n, K. Zeller *, V. Mavrodieva* & M. Nakhla *

author keywords: genome; ex-type; high throughput sequencing; MinION ONT ultra-long read sequencing; Phytophthora; third generation high throughput sequencing; 3G HTS
MeSH headings : Contig Mapping; Genome; High-Throughput Nucleotide Sequencing; Nanopore Sequencing; Phytophthora / genetics; Plant Diseases / parasitology; Polymorphism, Single Nucleotide
TL;DR: The Ab initio prediction of genes from these species reveals that there are 16,838, 12,793 and 34,580 genes in P. ramorum, P. kernoviae and P. melonis, respectively, which is a significant contribution as these species are among the most important pathogens of regulatory concern at different regions of the world. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: October 26, 2020

2018 article

Draft Genome Resources for the Phytopathogenic Fungi Monilinia fructicola, M. fructigena, M. polystroma, and M. laxa, the Causal Agents of Brown Rot

Rivera, Y., Zeller, K., Srivastava, S., Sutherland, J., Galvez, M., Nakhla, M., … Abad, Z. G. (2018, October). PHYTOPATHOLOGY, Vol. 108, pp. 1141–1142.

By: Y. Rivera *, K. Zeller *, S. Srivastava n, J. Sutherland n, M. Galvez n, M. Nakhla *, A. Poniatowska *, G. Schnabel *, G. Sundin*, Z. Abad*

MeSH headings : Ascomycota / genetics; Genome, Fungal; Plant Diseases / microbiology; Rosaceae / microbiology
TL;DR: These are the first draft genome resources publicly available for M. laxa, M. fructigena, and M. polystroma, which cause brown rot disease of stone and pome fruits. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: October 16, 2018

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