Siddhartha Thakur

Also known as: Sid

https://orcid.org/0000-0003-3787-9939

Antimicrobial Resistance, Food Safety, Public Health, Genotyping, Whole Genome Sequencing, Global Health, Infectious Diseases

Works (99)

Updated: March 1st, 2024 04:32

2024 journal article

Characteristics of antimicrobial resistance in Escherichia coli isolated from retail meat products in North Carolina

PLOS ONE, 19(1).

By: M. Aworh, S. Thakur, C. Gensler, E. Harrell, L. Harden, P. Fedorka-Cray, M. Jacob

Sources: Web Of Science, ORCID
Added: February 26, 2024

2024 article

Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing

Grinevich, D., Harden, L., Thakur, S., & Callahan, B. (2024, February 6). (M. G. I. Langille, Ed.). MSYSTEMS, Vol. 2.

By: D. Grinevich n, L. Harden n, S. Thakur n & B. Callahan n

co-author countries: United States of America 🇺🇸

Ed(s): M. Langille

author keywords: serotyping; food-borne pathogens; Salmonella; Escherichia coli; 16S rRNA; long-read sequencing
Sources: Web Of Science, ORCID
Added: February 7, 2024

2023 journal article

Detection of resistance and virulence plasmids in Campylobacter coli and Campylobacter jejuni isolated from North Carolina food animal production, 2018-2019

FOOD MICROBIOLOGY, 116.

By: D. Hull n, E. Harrel n, L. Harden n & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Antimicrobial resistance; Food -borne pathogen; Horizontal gene transfer; Transposons; Bioinformatics
Sources: Web Of Science, ORCID
Added: October 2, 2023

2023 article

Draft Genome Sequences of Escherichia coli and Enterococcus faecalis Coisolated from Polymicrobial Extraintestinal Infections of Chickens and Turkeys

Walker, G. K., Harden, L., Suyemoto, M. M., Thakur, S., Jacob, M., & Borst, L. B. (2023, February 21). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 2.

By: G. Walker n, L. Harden n, M. Suyemoto n, S. Thakur n, M. Jacob n & L. Borst n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: March 20, 2023

2023 article

Draft genome sequences of 12 Escherichia coli co-isolated with Enterococcus spp. from dogs with polybacterial bacteriuria at a veterinary hospital

Walker, G. K., Harden, L., Suyemoto, M. M., Thakur, S., Jacob, M., & Borst, L. B. (2023, August 8). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 8.

By: G. Walker n, L. Harden n, M. Suyemoto n, S. Thakur n, M. Jacob n & L. Borst n

co-author countries: United States of America 🇺🇸
author keywords: E; coli; UPEC; canine urinary tract infection; polymicrobial infections
Sources: Web Of Science, ORCID
Added: August 21, 2023

2023 journal article

Uncovering changes in microbiome profiles across commercial and backyard poultry farming systems

MICROBIOLOGY SPECTRUM, 11(5).

By: M. Muyyarikkandy n, J. Parzygnat n & S. Thakur n

co-author countries: United States of America 🇺🇸

Contributors: A. Agunos & G. Agga

Ed(s): B. Steven

author keywords: poultry microbiome; broiler farming; relative abundance; marker taxa; temporal changes
Sources: Web Of Science, ORCID
Added: September 24, 2023

2022 journal article

Characterization of Salmonella enterica Contamination in Pork and Poultry Meat from Sao Paulo/Brazil: Serotypes, Genotypes and Antimicrobial Resistance Profiles

PATHOGENS, 11(3).

By: V. Gomes*, L. Moreno*, A. Silva*, S. Thakur n, R. La Ragione*, A. Mather*, A. Moreno*

co-author countries: Brazil 🇧🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Salmonella enterica; pork; poultry; serotype; antimicrobial resistance; PFGE
Sources: ORCID, Web Of Science
Added: March 21, 2022

2022 journal article

Evidence of sheep and abattoir environment as important reservoirs of multidrug-resistant Salmonella and extended-spectrum beta-lactamase Escherichia coli

International Journal of Food Microbiology, 363, 109516.

By: N. Atlaw n, S. Keelara n, M. Correa n, D. Foster n, W. Gebreyes*, A. Aidara-Kane*, L. Harden n, S. Thakur n, P. Fedorka-Cray n

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: Salmonella; Abattoir; Sheep; Antimicrobial susceptibility; Prevalence
MeSH headings : Abattoirs; Animals; Anti-Bacterial Agents / pharmacology; Cattle; Chickens; Cross-Sectional Studies; Drug Resistance, Multiple, Bacterial; Escherichia coli / genetics; Salmonella / genetics; Sheep; Swine; beta-Lactamases / genetics
Sources: Web Of Science, ORCID
Added: January 5, 2022

2022 article

Genomic Screening of Antimicrobial Resistance Markers in UK and US Campylobacter Isolates Highlights Stability of Resistance over an 18-Year Period

Vliet, A. H. M., Thakur, S., Prada, J. M., Mehat, J. W., & La Ragione, R. M. (2022, April 11). ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Vol. 4.

By: A. Vliet*, S. Thakur n, J. Prada*, J. Mehat* & R. La Ragione*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: antimicrobial resistance; antibiotic stewardship; Campylobacter; surveillance; quinolones; tetracycline; aminoglycosides; macrolides; whole-genome sequencing; surveillance studies
MeSH headings : Aminoglycosides; Anti-Bacterial Agents / pharmacology; Campylobacter / genetics; Campylobacter Infections / drug therapy; Campylobacter Infections / epidemiology; Campylobacter Infections / microbiology; Campylobacter coli; Campylobacter jejuni; Drug Resistance, Bacterial / genetics; Genomics; Humans; Macrolides / pharmacology; Microbial Sensitivity Tests; Multilocus Sequence Typing; Quinolones; United States / epidemiology
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 journal article

Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections

PLOS ONE, 17(3).

By: Y. Dieye*, D. Hull n, A. Wane*, L. Harden n, C. Fall*, B. Sambe-Ba*, A. Seck*, P. Fedorka-Cray n, S. Thakur n

co-author countries: Senegal 🇸🇳 United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Chickens; Drug Resistance, Bacterial / genetics; Drug Resistance, Multiple, Bacterial / genetics; Gastroenteritis / microbiology; Genomics; Humans; Microbial Sensitivity Tests; Phylogeny; Salmonella; Salmonella Infections / epidemiology; Salmonella Infections / microbiology; Senegal / epidemiology
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 journal article

Molecular characterization of multi drug resistant Escherichia coli isolates at a tertiary hospital in Abuja, Nigeria

Scientific Reports, 12(1).

By: N. Medugu*, M. Aworh*, K. Iregbu*, P. Nwajiobi-Princewill*, K. Abdulraheem*, D. Hull n, L. Harden n, P. Singh* ...

co-author countries: Nigeria 🇳🇬 United States of America 🇺🇸
MeSH headings : Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Drug Resistance, Multiple, Bacterial / genetics; Escherichia coli / genetics; Escherichia coli Infections / drug therapy; Escherichia coli Infections / epidemiology; Escherichia coli Proteins / genetics; Female; Humans; Male; Microbial Sensitivity Tests; Nigeria / epidemiology; Tertiary Care Centers; beta-Lactamases / genetics; beta-Lactamases / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: September 28, 2022

2022 journal article

Multidrug resistance and virulence genes carried by mobile genomic elements in Salmonella enterica isolated from live food animals, processed, and retail meat in North Carolina, 2018-2019

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 378.

By: D. Hull n, E. Harrell n, L. Harden n & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Whole-genome sequencing; Plasmid assembly; Bioinformatics; Pathogen fitness; Food safety
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Cattle; Drug Resistance, Multiple, Bacterial / genetics; Genomics; Humans; Meat; Microbial Sensitivity Tests; North Carolina; Plasmids; Poultry; Salmonella Infections; Salmonella enterica; Swine; Virulence / genetics; Virulence Factors / genetics
Sources: Web Of Science, ORCID
Added: August 15, 2022

2022 journal article

Toward the Adoption of Loop-Mediated Isothermal Amplification for Salmonella Screening at the National Antimicrobial Resistance Monitoring System's Retail Meat Sites

FOODBORNE PATHOGENS AND DISEASE, 19(11), 758–766.

By: S. Young*, K. Domesle*, R. McDonald*, K. Lozinak*, P. Laksanalamai*, E. Harrell n, S. Thakur n, C. Kabera* ...

co-author countries: United States of America 🇺🇸
author keywords: antimicrobial resistance; LAMP; NARMS; Salmonella; screening; monitoring
MeSH headings : Humans; Animals; United States; Anti-Bacterial Agents / pharmacology; Drug Resistance, Bacterial / genetics; Salmonella; Meat / microbiology; Microbial Sensitivity Tests
Sources: Web Of Science, ORCID
Added: May 1, 2023

2022 article

Tracking the Transmission of Antimicrobial-Resistant Non-O157 Escherichia coli and Salmonella Isolates at the Interface of Food Animals and Fresh Produce from Agriculture Operations Using Whole-Genome Sequencing

Glaize, A., Hull, D., Raymond, L., Vliet, A. H. M., Gutierrez-Rodriguez, E., & Thakur, S. (2022, August 4). FOODBORNE PATHOGENS AND DISEASE, Vol. 8.

By: A. Glaize n, D. Hull n, L. Raymond n, A. Vliet*, E. Gutierrez-Rodriguez* & S. Thakur n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: extended-spectrum beta-lactamase; phylogroups; antimicrobial resistance; enteropathogenic Escherichia coli; dairy; poultry
MeSH headings : Agriculture; Animals; Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Drug Resistance, Bacterial / genetics; Escherichia coli; Escherichia coli Infections / veterinary; Microbial Sensitivity Tests; Poultry; Salmonella; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: August 29, 2022

2021 journal article

Antimicrobial resistance and interspecies gene transfer in Campylobacter coli and Campylobacter jejuni isolated from food animals, poultry processing, and retail meat in North Carolina, 2018-2019

PLOS ONE, 16(2).

By: D. Hull n, E. Harrell n, A. Vliet*, M. Correa n & S. Thakur n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Campylobacter coli / drug effects; Campylobacter coli / genetics; Campylobacter coli / isolation & purification; Campylobacter jejuni / drug effects; Campylobacter jejuni / genetics; Campylobacter jejuni / isolation & purification; Drug Resistance, Bacterial; Gene Transfer, Horizontal; Meat / microbiology; North Carolina; Poultry / microbiology
Sources: Web Of Science, ORCID
Added: March 15, 2021

2021 article

Association between dietary vitamin D and calcium intakes and bone health outcomes in UK African-Caribbean women

PROCEEDINGS OF THE NUTRITION SOCIETY, Vol. 80.

By: R. Vearing*, S. Wilson-Barnes*, K. Charlton*, Y. Probst*, H. Ribeiro*, S. Thakur n, M. Mendes*, S. Lanham-New*, K. Hart*

co-author countries: Australia 🇦🇺 Brazil 🇧🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: May 24, 2021

2021 journal article

Colonization with multidrug-resistant Enterobacteriaceae among infants: an observational study in southern Sri Lanka

ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL, 10(1).

By: H. Meredith*, S. Kularatna*, K. Nagaro*, A. Nagahawatte*, C. Bodinayake*, R. Kurukulasooriya*, N. Wijesingha*, L. Harden n ...

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 Sri Lanka 🇱🇰 United States of America 🇺🇸
author keywords: ESBL; CRE; Multidrug-resistant Enterobacteriaceae; Sri Lanka; Intestinal colonization
MeSH headings : Adult; Drug Resistance, Multiple, Bacterial; Enterobacteriaceae / drug effects; Enterobacteriaceae Infections / epidemiology; Female; Hospitals, Teaching; Humans; Infant, Newborn; Male; Pregnancy; Rectum / microbiology; Sri Lanka / epidemiology; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Does Irrigation with Treated and Untreated Wastewater Increase Antimicrobial Resistance in Soil and Water: A Systematic Review

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH.

By: S. Slobodiuk n, C. Niven n, G. Arthur n, S. Thakur n & A. Ercumen n

co-author countries: United States of America 🇺🇸
author keywords: antimicrobial resistance; resistance genes; resistant bacteria; persistent organic pollutants; wastewater irrigation; wastewater reuse; water scarcity; water insecurity; untreated municipal wastewater; treated municipal wastewater
MeSH headings : Agricultural Irrigation; Angiotensin Receptor Antagonists; Angiotensin-Converting Enzyme Inhibitors; Anti-Bacterial Agents / pharmacology; Drug Resistance, Bacterial; Genes, Bacterial; Humans; Soil; Wastewater / analysis; Water
Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 journal article

Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments

Antimicrobial Resistance & Infection Control, 10(1).

By: M. Aworh*, J. Kwaga*, R. Hendriksen*, E. Okolocha* & S. Thakur n

co-author countries: Denmark 🇩🇰 Nigeria 🇳🇬 United States of America 🇺🇸
author keywords: Escherichia coli; Antimicrobial resistance; Prevalence; Chicken; Multidrug resistance; Genetic relatedness; One health; Nigeria
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Chickens / microbiology; Cross-Sectional Studies; Drug Resistance, Multiple, Bacterial / genetics; Escherichia coli / genetics; Escherichia coli / isolation & purification; Farms; Humans; Microbial Sensitivity Tests; Multilocus Sequence Typing; Nigeria; Phylogeny; Plasmids / genetics; Polymorphism, Single Nucleotide; Poultry / microbiology; Whole Genome Sequencing
Sources: Web Of Science, ORCID, Crossref
Added: April 5, 2021

2021 journal article

Genomic Characterization of a Nalidixic Acid-Resistant Salmonella Enteritidis Strain Causing Persistent Infections in Broiler Chickens

FRONTIERS IN VETERINARY SCIENCE, 8.

By: G. Walker n, M. Suyemoto n, D. Hull n, S. Gall n, F. Jimenez n, L. Chen n, S. Thakur n, R. Crespo n, L. Borst n

co-author countries: United States of America 🇺🇸

Contributors: G. Walker n, M. Suyemoto n, D. Hull n, S. Gall n, F. Jimenez n, L. Chen n, S. Thakur n, R. Crespo n, L. Borst n

author keywords: Salmonella Enteritidis; poultry; genomics; antimicrobial resistance; broilers
Sources: Web Of Science, ORCID
Added: September 27, 2021

2021 article

Global Perspective of the Vitamin D Status of African-Caribbean Populations: A Systematic Review and Meta-analysis

Vearing, R. M., Hart, K. H., Darling, A. L., Probst, Y., Olayinka, A. S., Mendis, J., … Lanham-New, S. A. (2021, July 19). EUROPEAN JOURNAL OF CLINICAL NUTRITION, Vol. 7.

By: R. Vearing*, K. Hart*, A. Darling*, Y. Probst*, A. Olayinka*, J. Mendis*, H. Ribeiro, S. Thakur n ...

co-author countries: Australia 🇦🇺 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
MeSH headings : Diabetes Mellitus, Type 2; Dietary Supplements; Humans; Seasons; Vitamin D; Vitamin D Deficiency / epidemiology; Vitamins
Sources: Web Of Science, ORCID
Added: August 2, 2021

2021 journal article

Identification of CTX-M type ESBL E. coli from sheep and their abattoir environment using whole-genome sequencing

Pathogens, 10(11), 1480.

By: N. Atlaw n, S. Keelara n, M. Correa n, D. Foster n, W. Gebreyes*, A. Aidara-Kane*, L. Harden n, S. Thakur n, P. Fedorka-Cray n

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: abattoir environment; antimicrobial resistance; E. coli; ESBL; North Carolina; sheep; whole-genome sequencing
Sources: ORCID, Web Of Science
Added: November 16, 2021

2021 journal article

Impact of the COVID-19 pandemic on the surveillance, prevention and control of antimicrobial resistance: a global survey

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 76(11), 3045–3058.

By: S. Tomczyk*, A. Taylor*, A. Brown*, M. Kraker*, A. El-Saed*, M. Alshamrani*, R. Hendriksen*, M. Jacob n ...

co-author countries: Switzerland 🇨🇭 Germany 🇩🇪 Denmark 🇩🇰 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Saudi Arabia 🇸🇦 Sweden 🇸🇪 United States of America 🇺🇸 South Africa 🇿🇦
MeSH headings : Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Anti-Infective Agents; COVID-19; Drug Resistance, Bacterial; Humans; Pandemics / prevention & control; SARS-CoV-2; Surveys and Questionnaires
Sources: Web Of Science, ORCID
Added: January 18, 2022

2021 journal article

Resistome of a carbapenemase-producing novel ST232 Klebsiella michiganensis isolate from urban hospital effluent in South Africa

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE, 24, 321–324.

By: T. King*, S. Schmidt*, S. Thakur n, P. Fedorka-Cray n, S. Keelara n, L. Harden n, S. Essack*

co-author countries: United States of America 🇺🇸 South Africa 🇿🇦
author keywords: Klebsiella michiganensis; Genome; Carbapenemase; Hospital effluent; South Africa
MeSH headings : Bacterial Proteins; Drug Resistance, Bacterial / genetics; Hospitals, Urban; Klebsiella / drug effects; Klebsiella / genetics; South Africa; beta-Lactamases
Sources: Web Of Science, ORCID
Added: April 26, 2021

2021 journal article

The effect of vegetation barriers at reducing the transmission of Salmonella and Escherichia coli from animal operations to fresh produce

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 347.

By: A. Glaize n, M. Young n, L. Harden n, E. Gutierrez-Rodriguez* & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Seasonality; Repetitive PCR; Dairy; Poultry; Distance; Wind
MeSH headings : Animals; Cattle; Dairying; Escherichia coli / growth & development; Escherichia coli / isolation & purification; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Farms; Feces / microbiology; Lettuce / microbiology; Solanum lycopersicum / microbiology; Poultry / microbiology; Salmonella / growth & development; Salmonella / isolation & purification; Salmonella Infections, Animal / transmission
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Ultra-accurate microbial amplicon sequencing with synthetic long reads

MICROBIOME, 9(1).

By: B. Callahan n, D. Grinevich n, S. Thakur n, M. Balamotis & T. Ben Yehezkel

co-author countries: United States of America 🇺🇸
author keywords: Synthetic long reads; Amplicon sequencing; Metagenomics; Long-read sequencing
MeSH headings : High-Throughput Nucleotide Sequencing; Metagenome; Microbiota / genetics; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: June 6, 2021

2020 journal article

Antimicrobial resistance and virulence factors profile of Salmonella spp. and Escherichia coli isolated from different environments exposed to anthropogenic activity

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE, 22, 578–583.

By: M. Balbin n, D. Hull n, C. Guest*, L. Nichols n, R. Dunn n & S. Thakur n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Anthropogenic areas; Whole-genome sequencing; FosA7 gene; pHN7A8 (F33:A-:B-plasmid)
Sources: Web Of Science, ORCID
Added: October 12, 2020

2020 journal article

Class 1 integron-borne cassettes harboring blaCARB-2 gene in multidrug-resistant and virulent Salmonella Typhimurium ST19 strains recovered from clinical human stool samples, United States

PLOS ONE, 15(10), e0240978.

By: D. Monte n, F. Sellera*, R. Lopes*, S. Keelara n, M. Landgraf*, S. Greene, P. Fedorka-Cray n, S. Thakur n

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸

Ed(s): I. Karunasagar

MeSH headings : Anti-Bacterial Agents / pharmacology; Drug Resistance, Multiple, Bacterial; Genome, Bacterial; Humans; Integrons; Microbial Sensitivity Tests; Phylogeny; Plasmids / genetics; Salmonella Infections / microbiology; Salmonella typhimurium / classification; Salmonella typhimurium / genetics; Salmonella typhimurium / isolation & purification; Salmonella typhimurium / pathogenicity; United States; Virulence Factors / genetics; Whole Genome Sequencing; beta-Lactamases / genetics
Source: ORCID
Added: November 1, 2020

2020 article

Future perspectives in addressing the global issue of vitamin D deficiency

Mendes, M. M., Charlton, K., Thakur, S., Ribeiro, H., & Lanham-New, S. A. (2020, May). PROCEEDINGS OF THE NUTRITION SOCIETY, Vol. 79, pp. 246–251.

By: M. Mendes*, K. Charlton*, S. Thakur n, H. Ribeiro* & S. Lanham-New*

co-author countries: Australia 🇦🇺 Brazil 🇧🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Vitamin D; Deficiency; Global; Future perspectives
MeSH headings : Biological Variation, Population; Dietary Supplements; Global Health; Humans; Nutritional Status; Recommended Dietary Allowances; Vitamin D / administration & dosage; Vitamin D / analogs & derivatives; Vitamin D / blood; Vitamin D / physiology; Vitamin D Deficiency / diagnosis; Vitamin D Deficiency / epidemiology
Sources: Web Of Science, ORCID
Added: April 27, 2020

2020 journal article

International lineages of Salmonella enterica serovars isolated from chicken farms, Wakiso District, Uganda

PLOS ONE, 15(1).

By: T. Ball n, D. Monte*, A. Aidara-Kane*, J. Matheu*, H. Ru n, S. Thakur n, F. Ejobi*, P. Fedorka-Cray n

co-author countries: Brazil 🇧🇷 Switzerland 🇨🇭 Uganda 🇺🇬 United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / classification; Anti-Bacterial Agents / pharmacology; Chickens / microbiology; Drug Resistance, Multiple, Bacterial / genetics; Farms; Genes, Bacterial; Humans; Immunologic Surveillance; Plasmids / chemistry; Plasmids / metabolism; Poultry Diseases / epidemiology; Poultry Diseases / microbiology; Poultry Diseases / transmission; Prevalence; Replicon; Salmonella Infections / epidemiology; Salmonella Infections / microbiology; Salmonella Infections / transmission; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Seasons; Uganda / epidemiology; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: June 15, 2020

2020 journal article

Molecular Epidemiology of Infectious Zoonotic and Livestock Diseases

MICROBIOLOGY SPECTRUM, 8(2).

By: W. Gebreyes*, D. Jackwood*, C. Bruno De Oliveira*, C. Lee*, A. Hoet* & S. Thakur n

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
MeSH headings : Animals; Campylobacter; Clostridioides difficile / genetics; Drug Resistance, Multiple, Bacterial / genetics; Farms; Genotyping Techniques / methods; Hospitals, Animal; Humans; Livestock / microbiology; Livestock / virology; Methicillin-Resistant Staphylococcus aureus / genetics; Molecular Epidemiology / methods; Salmonella / genetics; Virus Diseases / veterinary; Virus Diseases / virology; Zoonoses / microbiology; Zoonoses / virology
Sources: Web Of Science, ORCID
Added: April 14, 2020

2020 journal article

The role ofEnterococcus faecalisduring co-infection with avian pathogenicEscherichia coliin avian colibacillosis

AVIAN PATHOLOGY, 49(6), 589–599.

By: G. Walker n, M. Suyemoto n, S. Gall n, L. Chen n, S. Thakur n & L. Borst n

co-author countries: United States of America 🇺🇸
author keywords: Colibacillosis; Enterococcus; E; coli; co-infection; antimicrobial resistance; broiler; turkey
MeSH headings : Animals; Chick Embryo; Chickens / microbiology; Coinfection / veterinary; Enterococcus faecalis / physiology; Escherichia coli / physiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / pathology; Escherichia coli Infections / veterinary; Female; Gram-Positive Bacterial Infections / microbiology; Gram-Positive Bacterial Infections / pathology; Gram-Positive Bacterial Infections / veterinary; Phenotype; Poultry Diseases / epidemiology; Poultry Diseases / microbiology; Poultry Diseases / pathology; Virulence
Sources: Web Of Science, ORCID
Added: September 28, 2020

2020 journal article

Transmission of antimicrobial resistant non-O157 Escherichia coli at the interface of animal-fresh produce in sustainable farming environments

International Journal of Food Microbiology, 319, 108472.

By: A. Glaize n, E. Gutierrez-Rodriguez n, I. Hanning*, S. Díaz-Sánchez*, C. Gunter n, A. van Vliet*, W. Watson n, S. Thakur n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Pathogen transmission; Sustainable production systems; Antimicrobial resistance; Phylotyping; Non-O157 E. coli
MeSH headings : Ampicillin / pharmacology; Animals; Anti-Bacterial Agents / pharmacology; Enterotoxigenic Escherichia coli / drug effects; Enterotoxigenic Escherichia coli / genetics; Enterotoxigenic Escherichia coli / isolation & purification; Escherichia coli Infections / microbiology; Escherichia coli Infections / transmission; Farms; Foodborne Diseases / microbiology; Genome, Bacterial / genetics; Manure / microbiology; Microbial Sensitivity Tests; Serogroup; Streptomycin / pharmacology; Sulfisoxazole / pharmacology; Vegetables / microbiology
Sources: ORCID, Crossref
Added: July 7, 2020

2019 journal article

Endemic fluoroquinolone-resistant Salmonella enterica serovar Kentucky ST198 in northern India

MICROBIAL GENOMICS, 5(7).

By: J. Mahindroo*, D. Thanh*, T. Nguyen*, B. Mohan*, S. Thakur n, S. Baker*, N. Taneja*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 India 🇮🇳 United States of America 🇺🇸 Viet Nam 🇻🇳
author keywords: non-typhoidal Salmonella; fluoroquinolone; antimicrobial resistance; whole-genome sequencing; India
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Ciprofloxacin / pharmacology; Ciprofloxacin / therapeutic use; DNA, Bacterial / genetics; Drug Resistance, Bacterial; Humans; India / epidemiology; Phylogeny; Salmonella Infections, Animal / drug therapy; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Salmonella enterica / classification; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Serogroup; Whole Genome Sequencing
Sources: Web Of Science, ORCID
Added: August 19, 2019

2019 journal article

First Genome Sequence of Brucella abortus Biovar 3 Strain BAU21/S4023, Isolated from a Dairy Cow in Bangladesh

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 8(24).

co-author countries: United Arab Emirates 🇦🇪 Bangladesh 🇧🇩 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: July 1, 2019

2019 article

First Genome Sequence of Brucella abortus Biovar 3 Strain BAU21/S4023, Isolated from a Dairy Cow in Bangladesh (vol 8, e00446-19, 2019)

Islam, M. S., El Zowalaty, M. E., Vliet, A. H. M., Thakur, S., Khatun, M. M., Saha, S., … Islam, M. A. (2019, July). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 8.

By: M. Islam*, M. El Zowalaty*, A. Vliet*, S. Thakur n, M. Khatun*, S. Saha*, M. Rahman*, A. Noreddin*, M. Islam

co-author countries: United Arab Emirates 🇦🇪 Bangladesh 🇧🇩 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 5, 2019

2019 book

Food safety in Poultry meat production

(1st ed.). Springer US.

By: K. Venkitanarayanan, S. Thakur & S. Ricke

Source: NC State University Libraries
Added: February 21, 2019

2019 journal article

Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000-2016

SCIENTIFIC REPORTS, 9.

By: D. Monte n, N. Lincopan*, H. Berman n, L. Cerdeira*, S. Keelara n, S. Thakur n, P. Fedorka-Cray n, M. Landgraf*

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
MeSH headings : Agriculture; Animals; Brazil; Drug Resistance, Multiple, Bacterial / genetics; Poultry; Salmonella Infections, Animal / diagnosis; Salmonella Infections, Animal / genetics; Salmonella enterica / isolation & purification; Serogroup; Swine
Sources: Web Of Science, ORCID
Added: August 12, 2019

2019 journal article

Multidrug- and colistin-resistant Salmonella enterica 4,[5],12:i:- sequence type 34 carrying the mcr-3.1 gene on the IncHI2 plasmid recovered from a human

Journal of Medical Microbiology, 68(7), 986–990.

By: D. Monte n, V. Nelson n, L. Cerdeira*, S. Keelara n, S. Greene, D. Griffin, S. Rath, R. Hall ...

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: IncHI2; MCR-3.1; Salmonella enterica 4; [5]; 12:i:-; United States
MeSH headings : Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; China; Drug Resistance, Multiple, Bacterial / genetics; Humans; Plasmids / genetics; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Transferases (Other Substituted Phosphate Groups) / genetics; Transferases (Other Substituted Phosphate Groups) / metabolism; Travel
Sources: Web Of Science, ORCID, Crossref
Added: July 22, 2019

2019 article

Multidrug- and colistin-resistant Salmonella enterica 4,[5],12:i:- sequence type 34 carrying the mcr-3.1 gene on the IncHI2 plasmid recovered from a human (vol 68, pg 986, 2019)

Monte, D. F., Nelson, V., Cerdeira, L., Keelara, S., Greene, S., Griffin, D., … Thakur, S. (2019, November). JOURNAL OF MEDICAL MICROBIOLOGY, Vol. 68, pp. 1694–1694.

By: D. Monte n, V. Nelson n, L. Cerdeira*, S. Keelara n, S. Greene, D. Griffin, S. Rath, R. Hall ...

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: November 25, 2019

2019 journal article

Phenotypic and Genotypic Characterization of Escherichia coli and Salmonella enterica from Dairy Cattle Farms in the Wakiso District, Uganda: A Cross-Sectional Study

Foodborne Pathogens and Disease, 16(1), 54–59.

By: T. Ball n, D. Monte*, A. Aidara-Kane*, J. Matheu-Alvarez*, H. Ru n, S. Thakur n, J. Horovitz n, F. Ejobi* ...

co-author countries: Brazil 🇧🇷 Switzerland 🇨🇭 Uganda 🇺🇬 United States of America 🇺🇸
author keywords: antimicrobial resistance; ESBL; E; coli; Salmonella enterica; Uganda
MeSH headings : Animals; Anti-Infective Agents / pharmacology; Cattle; Cross-Sectional Studies; Dairying; Drug Resistance, Multiple, Bacterial; Escherichia coli / enzymology; Escherichia coli / genetics; Escherichia coli / isolation & purification; Escherichia coli Infections / epidemiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / veterinary; Farms; Feces / microbiology; Female; Pilot Projects; Plasmids / genetics; Quinolones / pharmacology; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Salmonella enterica / enzymology; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Uganda / epidemiology; beta-Lactamases / genetics
Sources: Crossref, ORCID
Added: February 18, 2019

2019 journal article

Prevalence and risk factors for multi-drug resistant Escherichia coli among poultry workers in the Federal Capital Territory, Abuja, Nigeria

PLOS ONE, 14(11), e0225379.

By: M. Aworh*, J. Kwaga*, E. Okolocha*, N. Mba & S. Thakur n

co-author countries: Nigeria 🇳🇬 United States of America 🇺🇸

Contributors: M. Aworh*, J. Kwaga*, E. Okolocha*, N. Mba & S. Thakur n

Ed(s): G. Woźniakowski

MeSH headings : Adolescent; Adult; Animals; Cross-Sectional Studies; Escherichia coli / drug effects; Escherichia coli Infections / epidemiology; Escherichia coli Infections / microbiology; Female; Humans; Male; Nigeria / epidemiology; Poultry Diseases / epidemiology; Prevalence; Risk Factors; Surveys and Questionnaires; Young Adult
Sources: Web Of Science, ORCID, Crossref
Added: June 8, 2020

2019 journal article

The Mandate for a Global “One Health” Approach to Antimicrobial Resistance Surveillance

The American Journal of Tropical Medicine and Hygiene, 1.

By: S. Thakur n & G. Gray*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents; Drug Resistance, Bacterial / drug effects; Ecuador; Escherichia coli / drug effects; Global Health; Poultry; Prevalence; Weights and Measures; beta-Lactamases
Sources: Crossref, ORCID
Added: February 18, 2019

2018 chapter

Antibiotic Usage in Poultry Production and Antimicrobial Resistant Salmonella in Poultry

In K. Venkitanarayanan, S. Thakur, & S. C. Ricke (Eds.), Food safety in Poultry meat production (p. 301). Publisher: Springer US.

By: D. Kumar, S. Pornsukarom & S. Thakur

Ed(s): K. Venkitanarayanan, S. Thakur & S. Ricke

Source: NC State University Libraries
Added: March 9, 2019

2018 journal article

Environmental Dissemination of Multidrug Methicillin-Resistant Staphylococcus sciuri After Application of Manure from Commercial Swine Production Systems

FOODBORNE PATHOGENS AND DISEASE, 15(4), 210–217.

By: D. Kumar*, S. Pornsukarom n, G. Sivaraman* & S. Thakur n

co-author countries: India 🇮🇳 United States of America 🇺🇸
author keywords: swine; manure; soil; antimicrobial resistance; environment
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Drug Resistance, Multiple, Bacterial / genetics; Erythromycin / pharmacology; Genes, Bacterial; Genotyping Techniques; Iowa; Manure / microbiology; Methicillin-Resistant Staphylococcus aureus / genetics; Methicillin-Resistant Staphylococcus aureus / isolation & purification; Microbial Sensitivity Tests; North Carolina; Soil Microbiology; Swine; Tetracycline / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

First report of mcr-1-harboring Salmonella enterica serovar Schwarzengrund isolated from poultry meat in Brazil

Diagnostic Microbiology and Infectious Disease, 11.

By: L. Moreno*, V. Gomes*, J. Moreira*, C. de Oliveira*, B. Peres*, A. Silva*, S. Thakur n, R. La Ragione*, A. Moreno*

co-author countries: Brazil 🇧🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: Salmonella enterica; Schwarzengrund; Poultry; Colistin resistance; Plasmid
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Brazil; Colistin / pharmacology; Drug Resistance, Bacterial; Escherichia coli Proteins / genetics; Genotype; Meat / microbiology; Microbial Sensitivity Tests; Multilocus Sequence Typing; Plasmids / analysis; Poultry; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Serogroup; Whole Genome Sequencing
Sources: Crossref, ORCID
Added: February 18, 2019

2018 journal article

Molecular Characterization of Salmonella spp. from Cattle and Chicken Farms in Uganda

Online Journal of Public Health Informatics, 10(1), 148.

By: T. Ball, P. Cray, J. Horovitz & S. Thakur

Source: NC State University Libraries
Added: February 18, 2019

2018 journal article

Molecular Tools To Study Preharvest Food Safety Challenges

Microbiology Spectrum, 6(1), 361–382.

By: D. Kumar* & S. Thakur n

co-author countries: India 🇮🇳 United States of America 🇺🇸

Ed(s): S. Thakur n & K. Kniel

MeSH headings : Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Food Contamination / analysis; Food Contamination / prevention & control; Food Microbiology / methods; Food Safety / methods; Foodborne Diseases / prevention & control; Humans; Meat / microbiology; Molecular Typing / methods; Oligonucleotide Array Sequence Analysis / methods; Polymerase Chain Reaction / methods; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: ORCID, Crossref, NC State University Libraries
Added: February 21, 2019

2018 journal article

Molecular tools to study preharvest food safety challenges

Microbiology Spectrum, 6(1).

By: D. Kumar & S. Thakur

Source: NC State University Libraries
Added: August 6, 2018

2018 book

Preharvest Food Safety

(T. & K., Eds.).

By: N. Libraries

Ed(s): Thakur & Kniel

Sources: Crossref, ORCID
Added: February 18, 2019

2018 book

Preharvest Food Safety

American Society for Microbiology.

By: S. Thakur & K. Kniel

Source: NC State University Libraries
Added: September 11, 2019

2018 book

Preharvest food safety

Washington, DC: ASM Press.

Siddhartha Thakur

Ed(s): S. Thakur & K. Kniel

Source: NC State University Libraries
Added: February 5, 2022

2018 journal article

The role of citizen science in addressing grand challenges in food and agriculture research

Proceedings of the Royal Society B: Biological Sciences, 285(1891), 20181977.

By: S. Ryan*, N. Adamson*, A. Aktipis*, L. Andersen*, R. Austin*, L. Barnes, M. Beasley, K. Bedell* ...

co-author countries: Denmark 🇩🇰 United States of America 🇺🇸 South Africa 🇿🇦

Contributors: S. Ryan*, N. Adamson*, A. Aktipis*, L. Andersen*, R. Austin*, L. Barnes, M. Beasley, K. Bedell* ...

author keywords: citizen science; agriculture; grand challenges; sustainable development goals; extension; food science
MeSH headings : Agriculture / standards; Agriculture / trends; Community Participation; Food; Research / standards; Research / trends; United States
Sources: Crossref, ORCID
Added: February 18, 2019

2018 journal article

Understanding the Complexities of Food Safety Using a “One Health” Approach

Microbiology Spectrum, 6(1).

By: K. Kniel*, D. Kumar* & S. Thakur n

co-author countries: India 🇮🇳 United States of America 🇺🇸
MeSH headings : Animal Husbandry / methods; Animals; Communicable Disease Control / methods; Communicable Diseases / transmission; Environmental Health / methods; Food Safety / methods; Humans; One Health; Zoonoses / prevention & control; Zoonoses / transmission
Sources: Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2018 journal article

Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources

BMC GENOMICS, 19.

By: S. Pornsukarom*, A. Vliet* & S. Thakur n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 Thailand 🇹🇭 United States of America 🇺🇸
author keywords: Salmonella; WGS; Core genome; SNP; FFP; Antimicrobial resistance; Virulence gene; Plasmid; Human; Swine; Poultry; Environment
MeSH headings : Agriculture; Animals; Anti-Bacterial Agents / pharmacology; Chickens; Drug Resistance, Bacterial; Genome, Bacterial; Genotype; Humans; Phylogeny; Polymorphism, Single Nucleotide; Salmonella / classification; Salmonella / genetics; Salmonella / isolation & purification; Salmonella / pathogenicity; Salmonella Infections / microbiology; Serogroup; Swine; Virulence; Whole Genome Sequencing / methods
Sources: Web Of Science, ORCID
Added: November 26, 2018

2017 journal article

Horizontal Dissemination of Antimicrobial Resistance Determinants in Multiple Salmonella Serotypes following Isolation from the Commercial Swine Operation Environment after Manure Application

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 83(20).

By: S. Pornsukarom n & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Salmonella; plasmid; antimicrobial resistance; horizontal gene transfer; environment; environmental microbiology; swine farm
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Conjugation, Genetic; Drug Resistance, Bacterial; Gene Transfer, Horizontal; Integrons; Manure / microbiology; Microbial Sensitivity Tests; Phylogeny; Plasmids / genetics; Plasmids / metabolism; Salmonella Infections, Animal / microbiology; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella enterica / isolation & purification; Salmonella enterica / metabolism; Serogroup; Swine; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 chapter

Molecular epidemiology of zoonotic and livestock diseases

In L. W. Riley (Ed.), Molecular Epidemiology of Infectious Diseases, Principles and Practices (2nd ed.). ASM Publications.

By: W. Gebreyes, D. Jackwood, C. Lee, A. Hoet, S. Thakur & L. Riley

Ed(s): L. Riley

Source: NC State University Libraries
Added: February 21, 2019

2017 journal article

Multilaboratory Survey To Evaluate Salmonella Prevalence in Diarrheic and Nondiarrheic Dogs and Cats in the United States between 2012 and 2014

Journal of Clinical Microbiology, 55(5), 1350–1368.

By: R. Reimschuessel*, M. Grabenstein*, J. Guag*, S. Nemser*, K. Song*, J. Qiu*, K. Clothier*, B. Byrne* ...

co-author countries: United States of America 🇺🇸

Ed(s): B. Fenwick

author keywords: Salmonella; diarrhea; fecal organisms; pets; WGS
MeSH headings : Animal Feed / microbiology; Animals; Anti-Bacterial Agents / therapeutic use; Cats; Cross-Sectional Studies; Dogs; Feces / microbiology; Female; Foodborne Diseases / epidemiology; Foodborne Diseases / microbiology; Foodborne Diseases / veterinary; Male; Microbial Sensitivity Tests; Salmonella / drug effects; Salmonella / isolation & purification; Salmonella Infections, Animal / drug therapy; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; United States
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Assessing the Impact of Manure Application in Commercial Swine Farms on the Transmission of Antimicrobial Resistant Salmonella in the Environment

PLOS ONE, 11(10).

By: S. Pornsukarom n & S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Drug Resistance, Multiple, Bacterial / drug effects; Electrophoresis, Gel, Pulsed-Field; Environment; Manure / microbiology; Microbial Sensitivity Tests; Phylogeny; Salmonella / classification; Salmonella / drug effects; Salmonella / isolation & purification; Salmonella Infections, Animal / microbiology; Salmonella Infections, Animal / pathology; Salmonella Infections, Animal / transmission; Serogroup; Streptomycin / pharmacology; Sulfisoxazole / pharmacology; Swine; Swine Diseases / microbiology; Swine Diseases / pathology; Tetracycline / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Biofilm Formation by Environmental Isolates of Salmonella and Their Sensitivity to Natural Antimicrobials

FOODBORNE PATHOGENS AND DISEASE, 13(9), 509–516.

By: S. Keelara n, S. Thakur n & J. Patel*

co-author countries: United States of America 🇺🇸
MeSH headings : Acrolein / analogs & derivatives; Acrolein / pharmacology; Animals; Anti-Bacterial Agents / pharmacology; Biofilms / drug effects; Biofilms / growth & development; Environmental Microbiology; Microbial Sensitivity Tests; Microscopy, Electron, Scanning; North Carolina; Oils, Volatile / pharmacology; Salmonella enterica / classification; Salmonella enterica / isolation & purification; Salmonella enterica / physiology; Swine / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Cronobacter sakazakii - An unrecognised food borne pathogen, India

International Journal of Infectious Diseases, 45, 182.

By: J. Mahindroo*, I. Shyam*, B. Mohan*, S. Thakur n & N. Taneja*

co-author countries: India 🇮🇳 United States of America 🇺🇸
Sources: Crossref, ORCID
Added: February 18, 2019

2016 chapter

Phenotypic Sub typing of Foodborne Pathogens

In S. Brul, P. M. Fratamico, & T. A. McMeekin (Eds.), Tracking Pathogens in the Food Chain. Woodhead Publishing Limited.

By: W. Gebereys & S. Thakur

Ed(s): S. Brul, P. Fratamico & T. McMeekin

Source: NC State University Libraries
Added: September 8, 2019

2015 journal article

Early-life dietary spray-dried plasma influences immunological and intestinal injury responses to later-life Salmonella typhimurium challenge

BRITISH JOURNAL OF NUTRITION, 113(5), 783–793.

By: P. Boyer n, . S. D'Costa, L. Edwards n, M. Milloway n, E. Susick n, L. Borst n, S. Thakur n, J. Campbell ...

co-author countries: United States of America 🇺🇸
author keywords: Spray-dried plasma; Early-life nutrition; Salmonella typhimurium; Intestinal inflammation; Mucosal immunity; Intestinal permeability; Weaning
MeSH headings : Animals; Biomarkers / blood; Biomarkers / metabolism; Blood Proteins / administration & dosage; Blood Proteins / therapeutic use; Crosses, Genetic; Cytokines / blood; Cytokines / metabolism; Diet / adverse effects; Diet / veterinary; Energy Intake; Enterocolitis / immunology; Enterocolitis / microbiology; Enterocolitis / prevention & control; Enterocolitis / veterinary; Feces / microbiology; Female; Ileum / immunology; Ileum / metabolism; Ileum / microbiology; Ileum / pathology; Immunity, Mucosal; Immunotherapy / adverse effects; Immunotherapy / veterinary; Intestinal Mucosa / immunology; Intestinal Mucosa / metabolism; Intestinal Mucosa / microbiology; Intestinal Mucosa / pathology; Male; Salmonella Infections, Animal / immunology; Salmonella Infections, Animal / metabolism; Salmonella Infections, Animal / microbiology; Salmonella Infections, Animal / prevention & control; Salmonella typhimurium / growth & development; Salmonella typhimurium / immunology; Salmonella typhimurium / isolation & purification; Sus scrofa; Swine; Swine Diseases / immunology; Swine Diseases / metabolism; Swine Diseases / microbiology; Swine Diseases / prevention & control; Weaning; Weight Gain
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Comparative phenotypic and genotypic characterization of temporally related nontyphoidal salmonella isolated from human clinical cases, pigs, and the environment in North Carolina

Foodborne Pathogens and Disease, 11(2), 156–164.

By: S. Keelara n, H. Scott*, W. Morrow n, C. Hartley*, D. Griffin*, W. Gebreyes*, S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Cephalosporins / pharmacology; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Genotype; Humans; Integrons; Microbial Sensitivity Tests; North Carolina; Phenotype; Salmonella / classification; Salmonella / genetics; Salmonella / isolation & purification; Swine / microbiology; beta-Lactamases / genetics
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

Dissemination of plasmid-encoded AmpC beta-lactamases in antimicrobial resistant Salmonella serotypes originating from humans, pigs and the swine environment

VETERINARY MICROBIOLOGY, 173(1-2), 76–83.

By: S. Keelara n & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Salmonella; Plasmids; Antimicrobial resistance and pigs; Conjugation
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Proteins / isolation & purification; Bacterial Typing Techniques; Blotting, Southern; Conjugation, Genetic; Humans; Microbial Sensitivity Tests; North Carolina / epidemiology; Plasmids; Polymerase Chain Reaction; Replicon; Salmonella / drug effects; Salmonella / enzymology; Salmonella / genetics; Salmonella Infections, Animal / drug therapy; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Salmonella Infections, Animal / transmission; Soil Microbiology; Swine / microbiology; Water Microbiology; beta-Lactamases / genetics; beta-Lactamases / isolation & purification
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Co-occurrence and Environmental Distribution of Campylobacter and Salmonella in Broiler Flocks

Research in Veterinary Science, 94, 33–42.

By: S. Thakur, J. Brake, S. Keelara, M. Zou & E. Susick

Source: NC State University Libraries
Added: February 18, 2019

2013 journal article

Farm and environmental distribution of Campylobacter and Salmonella in broiler flocks

RESEARCH IN VETERINARY SCIENCE, 94(1), 33–42.

By: S. Thakur n, J. Brake n, S. Keelara n, M. Zou* & E. Susick n

co-author countries: China 🇨🇳 United States of America 🇺🇸
author keywords: Campylobacter; Salmonella; Broiler; Antimicrobial resistance; Genotyping; Transmission
MeSH headings : Animal Husbandry; Animals; Campylobacter Infections / microbiology; Campylobacter jejuni / drug effects; Chickens / microbiology; Drug Resistance, Microbial; Environmental Microbiology; Feces / microbiology; Housing, Animal; Microbial Sensitivity Tests / veterinary; Poultry Diseases / microbiology; Salmonella Infections, Animal / microbiology; Salmonella typhimurium / drug effects; Streptomycin / pharmacology; Tetracycline / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Longitudinal Study of Distributions of Similar Antimicrobial-Resistant Salmonella Serovars in Pigs and Their Environment in Two Distinct Swine Production Systems

Applied and Environmental Microbiology, 79(17), 5167–5178.

By: S. Keelara n, H. Scott*, W. Morrow n, W. Gebreyes*, M. Correa n, R. Nayak*, R. Stefanova*, S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Abattoirs; Animal Husbandry; Animals; Anti-Bacterial Agents / pharmacology; Drug Resistance, Bacterial; Environmental Microbiology; Food Industry; Genotype; Longitudinal Studies; Meat / microbiology; Salmonella Infections, Animal / microbiology; Salmonella enterica / classification; Salmonella enterica / drug effects; Salmonella enterica / isolation & purification; Serotyping; Swine; Swine Diseases / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 journal article

Methicillin-Resistant Staphylococcus aureus in Pigs and Farm Workers on Conventional and Antibiotic-Free Swine Farms in the USA

PLOS ONE, 8(5).

By: T. Smith*, W. Gebreyes*, M. Abley*, A. Harper*, B. Forshey*, M. Male*, H. Martin*, B. Molla* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Agriculture; Animals; Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Bacterial Typing Techniques; Demography; Female; Livestock / microbiology; Male; Methicillin-Resistant Staphylococcus aureus / classification; Methicillin-Resistant Staphylococcus aureus / drug effects; Methicillin-Resistant Staphylococcus aureus / isolation & purification; Staphylococcal Infections / drug therapy; Staphylococcal Infections / microbiology; Staphylococcal Infections / veterinary; Sus scrofa / microbiology; Swine; Swine Diseases / drug therapy; Swine Diseases / microbiology; United States; Weaning
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Yersinia enterocolitica of Porcine Origin: Carriage of Virulence Genes and Genotypic Diversity

FOODBORNE PATHOGENS AND DISEASE, 10(1), 80–86.

By: D. Tadesse*, P. Bahnson*, J. Funk*, W. Morrow n, M. Abley*, V. Ponte*, S. Thakur n, T. Wittum* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Animals; Bacterial Proteins / genetics; Chromosomes, Bacterial / genetics; Cluster Analysis; DNA, Bacterial / genetics; Disease Reservoirs; Drug Resistance, Bacterial; Feces / microbiology; Foodborne Diseases / microbiology; Genetic Variation; Genotype; Humans; Midwestern United States; North Carolina; Phenotype; Plasmids / genetics; Serotyping; Swine; Swine Diseases / microbiology; Virulence Factors / genetics; Yersinia Infections / microbiology; Yersinia Infections / transmission; Yersinia enterocolitica / genetics; Yersinia enterocolitica / isolation & purification; Yersinia enterocolitica / pathogenicity; Zoonoses; beta-Lactamases / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Antimicrobial resistance, toxinotype, and genotypic profiling of clostridium difficile isolates of swine origin

Journal of Clinical Microbiology, 50(7), 2366–2372.

By: P. Fry*, S. Thakur n, M. Abley* & W. Gebreyes*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Bacterial Toxins / genetics; Clostridioides difficile / drug effects; Clostridioides difficile / genetics; Clostridioides difficile / isolation & purification; Clostridioides difficile / pathogenicity; Drug Resistance, Bacterial; Electrophoresis, Gel, Pulsed-Field; Feces / microbiology; Genes, Bacterial; Genotype; Humans; Molecular Typing; North Carolina; Ohio; Phylogeography; Polymerase Chain Reaction; Sequence Analysis, DNA; Swine
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

Longitudinal Study of the Persistence of Antimicrobial-Resistant Campylobacter Strains in Distinct Swine Production Systems on Farms, at Slaughter, and in the Environment

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 78(8), 2698–2705.

By: M. Quintana-Hayashi n & S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animal Husbandry; Animal Structures / microbiology; Animals; Anti-Bacterial Agents / pharmacology; Campylobacter coli / drug effects; Campylobacter coli / isolation & purification; Campylobacter jejuni / drug effects; Campylobacter jejuni / isolation & purification; Drug Resistance, Bacterial; Environmental Microbiology; Feces / microbiology; Longitudinal Studies; Microbial Sensitivity Tests; Swine / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Longitudinal study comparing the dynamics of Clostridium difficile in conventional and antimicrobial free pigs at farm and slaughter

VETERINARY MICROBIOLOGY, 157(1-2), 172–178.

By: E. Susick n, M. Putnam n, D. Bermudez n & S. Thakur n

co-author countries: United States of America 🇺🇸
author keywords: Clostridium difficile; Antimicrobial resistance; Swine; Toxinotyping; Toxins; Farm; Slaughter
MeSH headings : Animal Husbandry / methods; Animals; Anti-Bacterial Agents / administration & dosage; Clostridioides difficile / classification; Clostridioides difficile / drug effects; Clostridioides difficile / isolation & purification; Drug Resistance, Multiple, Bacterial; Longitudinal Studies; Microbial Sensitivity Tests; Prevalence; Sus scrofa / microbiology; Swine / microbiology; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Molecular Characterization of Salmonella enterica Serotype Enteritidis Isolates from Humans by Antimicrobial Resistance, Virulence Genes, and Pulsed-Field Gel Electrophoresis

FOODBORNE PATHOGENS AND DISEASE, 9(3), 232–238.

By: M. Zou*, S. Keelara n & S. Thakur n

co-author countries: China 🇨🇳 United States of America 🇺🇸
MeSH headings : Ampicillin / pharmacology; Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; DNA Fingerprinting; Disease Outbreaks; Disk Diffusion Antimicrobial Tests; Drug Resistance, Bacterial; Drug Resistance, Multiple, Bacterial; Eggs / microbiology; Electrophoresis, Gel, Pulsed-Field; Humans; Molecular Typing; North Carolina / epidemiology; Phylogeny; Salmonella Food Poisoning / epidemiology; Salmonella Food Poisoning / microbiology; Salmonella enteritidis / drug effects; Salmonella enteritidis / genetics; Salmonella enteritidis / isolation & purification; Salmonella enteritidis / pathogenicity; Seasons; United States / epidemiology; Virulence; Virulence Factors / genetics; Virulence Factors / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Phylogenetic Analysis Reveals Common Antimicrobial Resistant Campylobacter coli Population in Antimicrobial-Free (ABF) and Commercial Swine Systems

PLOS ONE, 7(9).

By: M. Quintana-Hayashi n & S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Alleles; Animal Husbandry / methods; Animals; Anti-Infective Agents / pharmacology; Campylobacter coli / metabolism; Cluster Analysis; Genetic Variation; Genotype; Microbial Sensitivity Tests / methods; Multilocus Sequence Typing; Mutation; Phylogeny; Swine; Swine Diseases / microbiology; Swine Diseases / prevention & control
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Unilateral Epididymitis Associated with Salmonella Bacteremia in a Dog

Clinical Theriogenology, 4(1), 61–65.

By: C. Perez, M. Whitacre, S. Thakur, S. Keelara, M. Fauls & E. Breitschwerdt

Source: NC State University Libraries
Added: February 18, 2019

2011 chapter

7 - Phenotypic subtyping of foodborne pathogens

In S. Brul, P. M. Fratamico, & T. A. McMeekin (Eds.), Tracing Pathogens in the Food Chain (pp. 141–156). http://www.sciencedirect.com/science/article/pii/B9781845694968500077

By: W. Gebreyes & S. Thakur

Ed(s): S. Brul, P. Fratamico & T. McMeekin

Source: NC State University Libraries
Added: February 27, 2019

2011 journal article

Detection of Clostridium difficile and Salmonella in Feral Swine Population in North Carolina

JOURNAL OF WILDLIFE DISEASES, 47(3), 774–776.

By: S. Thakur n, M. Sandfoss n, S. Kennedy-Stoskopf n & C. DePerno n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Animals, Domestic; Animals, Wild; Anti-Bacterial Agents / pharmacology; Clostridioides difficile / drug effects; Clostridioides difficile / isolation & purification; Disease Reservoirs / veterinary; Drug Resistance, Bacterial; Enterocolitis, Pseudomembranous / drug therapy; Enterocolitis, Pseudomembranous / epidemiology; Enterocolitis, Pseudomembranous / transmission; Enterocolitis, Pseudomembranous / veterinary; Female; Male; North Carolina / epidemiology; Prevalence; Salmonella / drug effects; Salmonella / isolation & purification; Salmonella Infections, Animal / drug therapy; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / transmission; Sus scrofa / microbiology; Swine; Swine Diseases / drug therapy; Swine Diseases / epidemiology; Swine Diseases / transmission
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Prevalence and Antimicrobial Resistance Profile of Campylobacter Spp. Isolated from Conventional and Antimicrobial-Free Swine Production Systems from Different U.S. Regions

FOODBORNE PATHOGENS AND DISEASE, 8(3), 367–374.

By: D. Tadesse*, P. Bahnson*, J. Funk*, S. Thakur n, W. Morrow n, T. Wittum*, F. DeGraves*, P. Rajala-Schultz*, W. Gebreyes*

co-author countries: United States of America 🇺🇸
MeSH headings : Abattoirs; Animal Husbandry; Animals; Anti-Bacterial Agents / administration & dosage; Anti-Bacterial Agents / pharmacology; Campylobacter / classification; Campylobacter / drug effects; Campylobacter / isolation & purification; Campylobacter Infections / epidemiology; Campylobacter Infections / microbiology; Campylobacter Infections / veterinary; Cohort Studies; Confidence Intervals; Drug Resistance, Bacterial; Feces / microbiology; Great Lakes Region / epidemiology; Microbial Sensitivity Tests / veterinary; Midwestern United States / epidemiology; Polymerase Chain Reaction; Prevalence; Risk Factors; Swine; Swine Diseases / epidemiology; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Antimicrobial Resistance, Virulence, and Genotypic Profile Comparison of Campylobacter jejuni and Campylobacter coli Isolated from Humans and Retail Meats

FOODBORNE PATHOGENS AND DISEASE, 7(7), 835–844.

By: S. Thakur n, S. Zhao*, P. McDermott*, H. Harbottle*, J. Abbott*, L. English*, W. Gebreyes*, D. White*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Animals, Domestic / microbiology; Campylobacter Infections / microbiology; Campylobacter Infections / transmission; Campylobacter coli / drug effects; Campylobacter coli / genetics; Campylobacter coli / isolation & purification; Campylobacter coli / pathogenicity; Campylobacter jejuni / drug effects; Campylobacter jejuni / genetics; Campylobacter jejuni / isolation & purification; Campylobacter jejuni / pathogenicity; Ciprofloxacin / pharmacology; Doxycycline / pharmacology; Drug Resistance, Bacterial; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Erythromycin / pharmacology; Genes, Bacterial; Genotype; Humans; Iowa; Meat / microbiology; Polymerase Chain Reaction; Restriction Mapping; Virulence / genetics; Virulence Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Phenotypic and Genotypic Heterogeneity of Campylobacter coli Within Individual Pigs at Farm and Slaughter in the US

ZOONOSES AND PUBLIC HEALTH, 57, 100–106.

By: S. Thakur n & W. Gebreyes*

co-author countries: United States of America 🇺🇸
author keywords: Campylobacter; heterogeneity; antimicrobial resistance; swine; minimum inhibitory concentration; multi locus sequence typing
MeSH headings : Abattoirs; Animal Husbandry; Animals; Anti-Bacterial Agents / pharmacology; Bacterial Typing Techniques / veterinary; Campylobacter Infections / drug therapy; Campylobacter Infections / microbiology; Campylobacter Infections / veterinary; Campylobacter coli / drug effects; Campylobacter coli / genetics; Campylobacter coli / isolation & purification; Drug Resistance, Multiple, Bacterial; Feces / microbiology; Genotype; Microbial Sensitivity Tests / veterinary; Multilocus Sequence Typing / veterinary; Phenotype; Swine / genetics; Swine / microbiology; Swine Diseases / drug therapy; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Prevalence and Distribution of Salmonella in Organic and Conventional Broiler Poultry Farms

FOODBORNE PATHOGENS AND DISEASE, 7(11), 1363–1371.

By: W. Alali*, S. Thakur n, R. Berghaus*, M. Martin n & W. Gebreyes*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Drug Resistance, Bacterial; Drug Resistance, Multiple; Electrophoresis, Gel, Pulsed-Field; Feces / microbiology; Microbial Sensitivity Tests; Organic Agriculture; Phenotype; Poultry / microbiology; Salmonella / classification; Salmonella / genetics; Salmonella / isolation & purification; Streptomycin; Water Microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Prevalence of antimicrobial resistance and association with toxin genes in Clostridium difficile in commercial swine

AMERICAN JOURNAL OF VETERINARY RESEARCH, 71(10), 1189–1194.

By: S. Thakur n, M. Putnam, P. Fry, M. Abley & W. Gebreyes*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Toxins / genetics; Clostridioides difficile / drug effects; Clostridioides difficile / genetics; Clostridium Infections / microbiology; Clostridium Infections / veterinary; Female; Male; Microbial Sensitivity Tests; Swine; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Genotyping of Campylobacter coli isolated from humans and retail meats using multilocus sequence typing and pulsed-field gel electrophoresis

JOURNAL OF APPLIED MICROBIOLOGY, 106(5), 1722–1733.

By: S. Thakur n, D. White*, P. McDermott*, S. Zhao*, B. Kroft*, W. Gebreyes, J. Abbott*, P. Cullen* ...

co-author countries: United States of America 🇺🇸
author keywords: antimicrobial resistance; Campylobacter coli; humans; multilocus sequence typing; pulsed-field gel electrophoresis; retail meats
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Campylobacter Infections / microbiology; Campylobacter coli / classification; Campylobacter coli / drug effects; Campylobacter coli / genetics; Cattle; Chickens; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Food Microbiology; Genetic Variation; Genotype; Humans; Meat / microbiology; Microbial Sensitivity Tests; Phenotype; Phylogeny; Swine; Turkeys
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Longitudinal Study of Salmonella Dispersion and the Role of Environmental Contamination in Commercial Swine Production Systems

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 75(6), 1478–1486.

By: P. Dorr, D. Tadesse*, B. Zewde*, P. Fry*, S. Thakur n & W. Gebreyes*

co-author countries: United States of America 🇺🇸
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Animals; Anti-Bacterial Agents / pharmacology; Bacterial Typing Techniques; Cluster Analysis; Cohort Studies; Cross-Sectional Studies; DNA Fingerprinting; DNA, Bacterial / genetics; Environmental Microbiology; Longitudinal Studies; Microbial Sensitivity Tests; Prevalence; Salmonella / classification; Salmonella / isolation & purification; Salmonella Infections, Animal / microbiology; Serotyping; Swine; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Occurrence of spvA Virulence Gene and Clinical Significance for Multidrug-Resistant Salmonella Strains

JOURNAL OF CLINICAL MICROBIOLOGY, 47(3), 777–780.

By: W. Gebreyes*, S. Thakur n, P. Dorr*, D. Tadesse*, K. Post* & L. Wolf*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Typing Techniques; Cluster Analysis; DNA Fingerprinting; DNA, Bacterial / genetics; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Genotype; Humans; Microbial Sensitivity Tests; Salmonella / drug effects; Salmonella / genetics; Salmonella / isolation & purification; Salmonella Infections / microbiology; Salmonella Infections, Animal / microbiology; Swine; Swine Diseases / microbiology; Virulence Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 article

Molecular epidemiologic investigation of Campylobacter coli in swine production systems, using multilocus sequence typing (vol 72, pg 5666, 2006)

Thakur, S., Morrow, W. E. M., Funk, J. A., Bahnson, P. B., & Gebreyes, W. A. (2008, January). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 74, pp. 342–342.

By: S. Thakur n, W. Morrow n, J. Funk n, P. Bahnson n & W. Gebreyes n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Occurrence of multidrug resistant Salmonella in antimicrobial-free (ABF) swine production systems

VETERINARY MICROBIOLOGY, 125(3-4), 362–367.

By: S. Thakur*, D. Tadesse*, M. Morrow n & W. Gebreyes*

co-author countries: United States of America 🇺🇸
author keywords: swine; Salmonella species; antimicrobial-free production system; antimicrobials; multidrug resistance
MeSH headings : Animal Husbandry / methods; Animals; Cross-Sectional Studies; Drug Resistance, Multiple, Bacterial; Feces / microbiology; Microbial Sensitivity Tests / veterinary; Prevalence; Salmonella / drug effects; Salmonella / isolation & purification; Swine / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Comparison of prevalence, antimicrobial resistance, and occurrence of multidrug-resistant Salmonella in antimicrobial-free and conventional pig production

JOURNAL OF FOOD PROTECTION, 69(4), 743–748.

By: W. Gebreyes n, S. Thakur n & W. Morrow n

co-author countries: United States of America 🇺🇸
MeSH headings : Animal Husbandry / methods; Animals; Anti-Bacterial Agents / pharmacology; Drug Resistance, Bacterial; Drug Resistance, Multiple, Bacterial; Prevalence; Salmonella Infections, Animal / drug therapy; Salmonella Infections, Animal / epidemiology; Salmonella enterica / classification; Salmonella enterica / drug effects; Salmonella enterica / growth & development; Swine; Swine Diseases / drug therapy; Swine Diseases / epidemiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Genetics of Antimicrobial Resistance

Animal Biotechnology, 17(2), 111–124.

By: H. Harbottle*, S. Thakur*, S. Zhao* & D. White*

co-author countries: United States of America 🇺🇸
author keywords: antimicrobial resistance genes; antimicrobial resistance mechanisms; conjugation; integron; plasmid; transposon
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Anti-Bacterial Agents / therapeutic use; Bacteria / drug effects; Bacteria / genetics; Bacteria / growth & development; Bacterial Infections / drug therapy; Bacterial Infections / microbiology; Bacterial Infections / veterinary; Drug Resistance, Bacterial / genetics; Drug Resistance, Multiple, Bacterial / genetics; Genome, Bacterial; Humans; Interspersed Repetitive Sequences; Phenotype; Transformation, Genetic
Sources: Crossref, ORCID
Added: February 18, 2019

2006 journal article

Molecular epidemiologic investigation of Campylobacter coli in swine production systems, using multilocus sequence typing

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(8), 5666–5669.

By: S. Thakur n, W. Morrow n, J. Funk*, P. Bahnson* & W. Gebreyes n

co-author countries: United States of America 🇺🇸
MeSH headings : Abattoirs; Animal Husbandry / methods; Animals; Anti-Bacterial Agents / pharmacology; Bacterial Proteins / genetics; Bacterial Typing Techniques; Campylobacter coli / classification; Campylobacter coli / genetics; Campylobacter coli / isolation & purification; Ciprofloxacin / pharmacology; Drug Resistance, Bacterial; Genotype; Molecular Epidemiology; Sequence Analysis, DNA / methods; Swine / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Molecular epidemiology and diversity of Salmonella serovar Typhimurium in pigs using phenotypic and genotypic approaches

EPIDEMIOLOGY AND INFECTION, 134(1), 187–198.

By: W. Gebreyes n, C. Altier n & S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animal Husbandry; Animals; DNA, Bacterial / analysis; Drug Resistance, Bacterial; Drug Resistance, Multiple; Electrophoresis, Gel, Pulsed-Field; Genotype; Longitudinal Studies; Nucleic Acid Amplification Techniques; Phenotype; Polymerase Chain Reaction; Salmonella Infections, Animal / microbiology; Salmonella typhimurium / classification; Salmonella typhimurium / genetics; Salmonella typhimurium / pathogenicity; Serotyping; Swine; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Campylobacter coli in swine production: Antimicrobial resistance mechanisms and molecular epidemiology

JOURNAL OF CLINICAL MICROBIOLOGY, 43(11), 5705–5714.

By: S. Thakur n & W. Gebreyes n

co-author countries: United States of America 🇺🇸
MeSH headings : Abattoirs; Animals; Animals, Domestic; Anti-Bacterial Agents / pharmacology; Campylobacter Infections / epidemiology; Campylobacter Infections / veterinary; Campylobacter Infections / virology; Campylobacter coli / drug effects; Campylobacter coli / genetics; Ciprofloxacin / pharmacology; Costs and Cost Analysis; DNA Gyrase / genetics; Drug Resistance, Multiple, Viral; Electrophoresis, Gel, Pulsed-Field / economics; Electrophoresis, Gel, Pulsed-Field / veterinary; Erythromycin / pharmacology; Evaluation Studies as Topic; Genetic Variation; Microbial Sensitivity Tests; Mutation; Sequence Analysis, DNA / economics; Sequence Analysis, DNA / veterinary; Species Specificity; Swine; Swine Diseases / epidemiology; Swine Diseases / virology; Tetracycline / pharmacology; United States
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Campylobacter coli: prevalence and antimicrobial resistance in antimicrobial-free (ABF) swine production systems

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 56(4), 765–768.

By: W. Gebreyes n, S. Thakur n & W. Morrow n

co-author countries: United States of America 🇺🇸
author keywords: pig; Campylobacter species; antibiotic resistance; antimicrobial-free production
MeSH headings : Abattoirs; Animal Husbandry; Animals; Anti-Bacterial Agents / administration & dosage; Anti-Bacterial Agents / pharmacology; Campylobacter Infections / microbiology; Campylobacter Infections / veterinary; Campylobacter coli / drug effects; Campylobacter coli / isolation & purification; Campylobacter coli / physiology; Carrier State / microbiology; Drug Resistance, Bacterial; Swine / microbiology; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Multidrug-resistant Salmonella enterica serovar Muenchen from pigs and humans and potential interserovar transfer of antimicrobial resistance

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 49(2), 503–511.

By: W. Gebreyes n & S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Blotting, Southern; Conjugation, Genetic; DNA Fingerprinting; DNA, Bacterial / genetics; Disease Reservoirs; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Gene Transfer, Horizontal; Humans; Integrons / genetics; Microbial Sensitivity Tests; Plasmids / genetics; Salmonella enterica / drug effects; Salmonella enterica / genetics; Salmonella typhimurium / drug effects; Salmonella typhimurium / genetics; Swine
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Prevalence and antimicrobial resistance of Campylobacter in antimicrobial-free and conventional pig production systems

JOURNAL OF FOOD PROTECTION, 68(11), 2402–2410.

By: S. Thakur n & W. Gebreyes n

co-author countries: United States of America 🇺🇸
MeSH headings : Animal Husbandry / methods; Animals; Anti-Bacterial Agents / pharmacology; Campylobacter / drug effects; Campylobacter / isolation & purification; Campylobacter coli / drug effects; Campylobacter coli / isolation & purification; Colony Count, Microbial / veterinary; Drug Resistance, Bacterial; Drug Resistance, Multiple, Bacterial; Food-Processing Industry / standards; Microbial Sensitivity Tests / veterinary; Prevalence; Swine; United States / epidemiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Characterization of Antimicrobial-Resistant Phenotypes and Genotypes among Salmonella enterica Recovered from Pigs on Farms, from Transport Trucks, and from Pigs after Slaughter

Journal of Food Protection, 67(4), 698–705.

By: W. Gebreyes n, P. Davies n, P. Turkson n, W. Morgan Morrow n, J. Funk n, C. Altier n, S. Thakur n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Colony Count, Microbial; Drug Resistance, Bacterial; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field; Genotype; Microbial Sensitivity Tests; Phenotype; Salmonella enterica / classification; Salmonella enterica / drug effects; Swine / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Trends in antimicrobial resistance, phage types and integrons among Salmonella serotypes from pigs, 1997-2000

Journal of Antimicrobial Chemotherapy, 53(6), 997–1003.

By: W. Gebreyes n, S. Thakur n, P. Davies n, J. Funk n & C. Altier n

co-author countries: United States of America 🇺🇸
author keywords: swine; food safety; antibiotic resistance; salmonellae
MeSH headings : Animals; Bacteriophage Typing; Drug Resistance, Bacterial; Feces / microbiology; Integrons / genetics; Microbial Sensitivity Tests; Reverse Transcriptase Polymerase Chain Reaction; Salmonella / drug effects; Salmonella / virology; Salmonella Phages; Swine / microbiology; Swine Diseases / epidemiology; Swine Diseases / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Molecular Epidemiology of Multi-drug resistant Salmonella enterica serovar Typhimurium isolated from Swine and Humans

Infection, Genetics and Evolution, 2, 277.

By: W. Gebreyes & S. Thakur

Source: NC State University Libraries
Added: February 18, 2019

Employment

Updated: August 7th, 2018 19:33

2007 - present

North Carolina State University Raleigh, NC, US
Professor Population Health and Pathobiology, College of Veterinary Medicine

Education

Updated: October 31st, 2020 09:37

2006 - 2007

Center for Veterinary Medicine, FDA Laurel, Maryland, US
Postdoctoral

2002 - 2005

North Carolina State University Raleigh, NC, US
PhD Population Health and Pathobiology

1998 - 2000

Indian Veterinary Research Institute Izatnagar, Uttar Pradesh, IN
MVSc Veterinary Public Health

1993 - 1998

Govind Ballabh Pant University of Agriculture and Technology Pantnagar, Uttarakhand, IN
BVSc & AH College of Veterinary Medicine

Funding History

Funding history based on the linked ORCID record. Updated: October 31st, 2020 09:39

grant September 1, 2020 - August 31, 2025
Monitoring antimicrobial resistance (AMR) in enteric pathogens isolated from retail meats and seafoods in North Carolina
United States Food and Drug Administration
grant July 5, 2019 - June 30, 2020
Enhancing the WGS based surveillance of Salmonella, Listeria, STEC and other foodborne related bacterial pathogens isolated from food and environment at the national and global level
United States Food and Drug Administration
grant September 5, 2017 - August 31, 2019
Enhancing the whole genome sequence(WGS)based surveillance of Salmonella, Listeria and Shiga Toxin producing Escherichia coli(STEC) isolated from food and environment at the national and global level
United States Food and Drug Administration
grant September 1, 2017 - August 31, 2022
Monitoring antimicrobial resistance (AMR) in Salmonella, Campylobacter, Escherichia coli and Enterococcus spp. isolated from retail meats in North Carolina
United States Food and Drug Administration
grant January 29 - September 30, 2015
Monitoring the Anitmicrobial Resistance Profile of Bacterial Food-borne Pathogens in Humans, Food Animals and Retail Meat in India
United States Department of Agriculture
grant June 30, 2014 - June 30, 2016
Food Safety at the Interface of Food Animals and Fresh Produce: Addressing Pathogen Risks on Sustainable Polycuture Farm
United States Department of Agriculture
grant September 16, 2011 - September 15, 2014
Salmonella serotype distribution in pets presented to veterinary teaching and com
United States Food and Drug Administration
grant September 1, 2008 - August 31, 2012
Molecular Epidemiology of Salmonella in Conventional and Antimicrobial Free Swine Production Systems
National Institute of Food and Agriculture
grant September 1, 2008 - February 28, 2013
An Integrated Approach To Determine Salmonella Dynamics In The Niche-Market Antimicrobial-Free Swine Production System
National Institute of Food and Agriculture

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