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2021 journal article
Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas)
Theoretical and Applied Genetics, 134(7), 1945–1955.
Contributors: B. Oloka n , G. Silva Pereira *, V. Amankwaah n, M. Mollinari n , K. Pecota n , B. Yada *, B. Olukolu*, n, G. Craig Yencho n
2021 journal article
Quantitative Trait Locus Mapping for Common Scab Resistance in a Tetraploid Potato Full-Sib Population
Plant Disease, 105(10), 3048–3054.
Contributors: G. Da Pereira, M. Mollinari n , X. Qu *, C. Thill*, n, K. Haynes *, G. Yencho n
2021 journal article
The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population
Heredity, 126(5), 817–830.
Contributors: G. Silva Pereira n, M. Mollinari n , M. Schumann n, M. Clough n, n & G. Yencho n
2020 journal article
Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations
Nature Genetics, 52(11), 1256–1264.
2020 journal article
Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops
Theoretical and Applied Genetics, 133(12), 3345–3363.
Contributors: D. Gemenet *, H. Lindqvist-Kreuze *, B. De Boeck *, G. Silva Pereira n, M. Mollinari n , n, G. Craig Yencho n, H. Campos *
2019 journal article
Genomic Selection with Allele Dosage in Panicum maximum Jacq.
G3-GENES GENOMES GENETICS, 9(8), 2463–2475.
2017 journal article
Genetic Architecture of Natural Variation Underlying Adult Foraging Behavior That Is Essential for Survival of Drosophila melanogaster
GENOME BIOLOGY AND EVOLUTION, 9(5), 1357–1369.
2017 journal article
Linkage map construction and QTL analysis for internal heat necrosis in autotetraploid potato
Theoretical and Applied Genetics, 130(10), 2045–2056.
2016 journal article
Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine
BMC Genetics, 17(1).
2014 journal article
Mapping epistatic quantitative trait loci
BMC GENETICS, 15.
2013 journal article
Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification
Cancer Informatics, 12, CIN.S10212.
2012 journal article
Cerebrospinal Fluid Metabolome in Mood Disorders-Remission State has a Unique Metabolic Profile
Scientific Reports, 2(1).
2012 chapter
Composite Interval Mapping and Multiple Interval Mapping: Procedures and Guidelines for Using Windows QTL Cartographer
In Methods in Molecular Biology (pp. 75–119).
2012 journal article
Merging pharmacometabolomics with pharmacogenomics using ‘1000 Genomes’ single-nucleotide polymorphism imputation
Pharmacogenetics and Genomics, 22(4), 247–253.
2012 journal article
Metabolomics Reveals Amino Acids Contribute to Variation in Response to Simvastatin Treatment
PLoS ONE, 7(7), e38386.
Ed(s): M. Oresic
2012 journal article
Multiple trait multiple interval mapping of quantitative trait loci from inbred line crosses
BMC Genetics, 13.
2011 journal article
Enteric Microbiome Metabolites Correlate with Response to Simvastatin Treatment
PLOS ONE, 6(10).
2011 journal article
High-Confidence Discovery of Genetic Network Regulators in Expression Quantitative Trait Loci Data
GENETICS, 187(3), 955–964.
2011 journal article
QTL Mapping for Days to Flowering under Drought Condition in Rice (Oryza sativa L.) Genome
Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 39(1), 58.
2010 journal article
Current Progress on Statistical Methods for Mapping Quantitative Trait Loci from Inbred Line Crosses
JOURNAL OF BIOPHARMACEUTICAL STATISTICS, 20(2), 454–481.
2010 journal article
Glycine and a Glycine Dehydrogenase (GLDC) SNP as Citalopram/Escitalopram Response Biomarkers in Depression: Pharmacometabolomics-Informed Pharmacogenomics
Clinical Pharmacology & Therapeutics, 89(1), 97–104.
2010 journal article
Lipidomic analysis of variation in response to simvastatin in the Cholesterol and Pharmacogenetics Study
Metabolomics, 6(2), 191–201.
2010 report
Power, sample size and confidence interval for quantitative trait loci mapping on multiple traits
2010 journal article
QTL Identification Using Combined Linkage and Linkage Disequilibrium Mapping for Milk Production Traits on BTA6 in Chinese Holstein Population
ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 23(10), 1261–1267.
2009 journal article
Contribution of genetic effects to genetic variance components with epistasis and linkage disequilibrium
BMC GENETICS, 10.
2009 journal article
Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains
Genetic Epidemiology, 33(2), 181–181.
2009 article
Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains (vol 32, pg 301, 2008)
Genetic Epidemiology, Vol. 33, pp. 181–181.
2009 journal article
Multiple interval mapping for gene expression QTL analysis
GENETICA, 137(2), 125–134.
2008 journal article
A Joint Association Test for Multiple SNPs in Genetic Case-Control Studies
GENETIC EPIDEMIOLOGY, 33(2), 151–163.
2008 journal article
From classical genetics to quantitative genetics to systems biology: Modeling epistasis
PLoS Genetics, 4(3).
2008 journal article
Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants
BMC Genomics, 9.
2008 journal article
Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains
GENETIC EPIDEMIOLOGY, 32(4), 301–312.
2008 journal article
Quantitative Trait Loci Mapping and The Genetic Basis of Heterosis in Maize and Rice
GENETICS, 180(3), 1707–1724.
2008 journal article
Statistical Methods for Mapping Multiple QTL
International Journal of Plant Genomics, 2008, 1–8.
2008 article
The Third International Conference of Quantitative Genetics
Weir, B. S., Hill, W. G., Zhu, J., & Zeng, Z.-B. (2009, June). GENETICA, Vol. 136, pp. 211–212.
2007 journal article
A semiparametric approach for composite functional mapping of dynamic quantitative traits
GENETICS, 177(3), 1859–1870.
2007 journal article
Speed-mapping quantitative trait loci using microarrays
NATURE METHODS, 4(10), 839–841.
2007 journal article
The Hill–Robertson effect is a consequence of interplay between linkage, selection and drift: a commentary on ‘The effect of linkage on limits to artificial selection’ by W. G. Hill and A. Robertson
Genetics Research, 89(5-6), 309–310.
2007 journal article
The role of epistasis in the manifestation of heterosis: A systems-oriented approach
GENETICS, 177(3), 1815–1825.
2007 journal article
eQTL Viewer: visualizing how sequence variation affects genome-wide transcription
BMC Bioinformatics, 8(7).
2006 journal article
A population-based latent variable approach for association mapping of quantitative trait loci
ANNALS OF HUMAN GENETICS, 70, 506–523.
2006 journal article
Models and partition of variance for quantitative trait loci with epistasis and linkage disequilibrium
BMC Genetics, 7.
2006 journal article
Multiple-interval mapping for ordinal traits
GENETICS, 173(3), 1649–1663.
2006 journal article
Validation of two major quantitative trait loci for fusarium head blight resistance in Chinese wheat line W14
PLANT BREEDING, 125(1), 99–101.
2005 journal article
Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid
GENETICS, 169(4), 2295–2303.
2005 journal article
Mixture model equations for marker-assisted genetic evaluation
JOURNAL OF ANIMAL BREEDING AND GENETICS, 122(4), 229–239.
2005 journal article
Modeling quantitative trait loci and interpretation of models
GENETICS, 169(3), 1711–1725.
2005 journal article
QTL mapping and the genetic basis of adaptation: recent developments
GENETICA, 123(1-2), 25–37.
2003 journal article
Genetic dissection of hybrid Incompatibilities between Drosophila simulansand D. mauritiana. II. Mapping hybrid male sterility loci on the third chromosome
Genetics, 164(4), 1399–1418.
2003 chapter
Quantitative Trait Loci Mapping
In D. Cooper (Ed.), Nature encyclopedia of the human genome. New York: Nature Publishing Group.
Ed(s): D. Cooper
2002 journal article
Discussion on the meeting on 'Statistical modelling and analysis of genetic data'
Journal of the Royal Statistical Society: Series B (Statistical Methodology), 64(4), 737–775.
2002 journal article
Linkage mapping of sex-specific differences
GENETICAL RESEARCH, 79(1), 85–96.
2002 journal article
Modeling epistasis of quantitative trait loci using Cockerham's model
Genetics, 160(3), 1243–1261.
2002 journal article
Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing species
THEORETICAL POPULATION BIOLOGY, 61(3), 349–363.
2001 journal article
A general polyploid model for analyzing gene segregation in outcrossing tetraploid species
Genetics, 159(2), 869–882.
2001 journal article
A multivalent pairing model of linkage analysis in autotetraploids
Genetics, 159(3), 1339–1350.
2001 journal article
An analysis of polygenes affecting wing shape on chromosome 2 in Drosophila melanogaster
Genetics, 159(3), 1045–1057.
2001 journal article
Joint linkage and linkage disequilibrium mapping in natural populations
Genetics, 157(2), 899–909.
2001 journal article
Preliminary interspecific genetic maps of the Populus genome constructed from RAPD markers
GENOME, 44(4), 602–609.
2001 chapter
QTL Mapping
In Encyclopedia of Genetics (pp. 1587–1593).
2001 chapter
Quantitative trait loci: statistical methods for mapping their positions
In E. C. R. Reeve & I. Black (Eds.), Encyclopedia of Genetics. London, UK: Fitzroy Dearborn Publishers.
Ed(s): E. Reeve & I. Black
2000 journal article
A general mixture model approach for mapping quantitative trait loci from diverse cross designs involving multiple inbred lines
GENETICAL RESEARCH, 75(3), 345–355.
2000 journal article
An integrated genetic map of Populus deltoides based on amplified fragment length polymorphisms
THEORETICAL AND APPLIED GENETICS, 100(8), 1249–1256.
2000 journal article
Genetic architecture of a morphological shape difference between two Drosophila species
Genetics, 154(1), 299–310.
2000 journal article
Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster
Genetics, 154(1), 213–227.
2000 journal article
Inferring linkage disequilibrium between a polymorphic marker locus and a trait locus in natural populations
Genetics, 156(1), 457–467.
2000 chapter
Molecular dissection of quantitative traits: new perspectives from populus
In S. M. Jain & S. C. Minocha (Eds.), Molecular biology of woody plants (Vol. 1, pp. 475–490). Dordrecht; Boston: Kluwer Academic.
Ed(s): S. Jain & S. Minocha
2000 journal article
The case for molecular mapping in forest tree breeding
Plant Breeding Reviews, 19(2000), 41–68.
1999 journal article
An analysis of polygenes affecting wing shape on chromosome 3 in Drosophila melanogaster
Genetics, 153(2), 773–786.
1999 journal article
Estimating the genetic architecture of quantitative traits
GENETICAL RESEARCH, 74(3), 279–289.
1999 journal article
Multiple interval mapping for quantitative trait loci
Genetics, 152(3), 1203–1216.
1997 journal article
Combining information from data in mapping analysis: use of multiple markers and multiple traits
Animal Biotechnology, 8(1), 145–150.
1997 journal article
General formulas for obtaining the MLEs and the asymptotic variance-covariance matrix in mapping quantitative trait loci when using the EM algorithm
BIOMETRICS, 53(2), 653–665.
1997 journal article
Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines
GENETICA, 101(1), 47–58.
1997 book
QTL Cartographer: a reference manual and tutorial for QTL mapping
Department of Statistics, NC State University.
1997 journal article
Quantitative genetic analysis of divergence in male secondary sexual traits between Drosophila simulans and Drosophila mauritiana
EVOLUTION, 51(3), 816–832.
1997 journal article
Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 94(18), 9734–9739.
1997 journal article
Statistical issues in the search for genes?
Statistical Science, 12(1997), 195–219.
1996 journal article
Design III with marker loci
Genetics, 143(3), 1437–1456.
1996 journal article
Genetic analysis of a morphological shape difference in the male genitalia of Drosophila simulans and D. mauritiana
Genetics, 142(4), 1129–1145.
1996 journal article
Statistical methods for mapping quantitative trait loci
Acta Agronomica Sinica, 22, 535–549.
1995 journal article
Mapping of body weight loci on mouse Chromosome X
Mammalian Genome, 6(11), 778–781.
1995 journal article
Multiple-trait analysis of genetic-mapping for quantitative trait loci
Genetics, 140(3), 1111–1127.
1994 conference paper
A composite interval mapping method for locating multiple QTLs
Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, 21, 37–40.
1994 journal article
Precision mapping of quantitative trait loci
Genetics, 136(4), 1457–1468.
1994 conference paper
ZMAP---A QTL Cartographer
Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, 22, 65–66.
1993 journal article
Mutation models and quantitative genetic variation
Genetics, 133(3), 729.
1993 journal article
THEORETICAL BASIS FOR SEPARATION OF MULTIPLE LINKED GENE EFFECTS IN MAPPING QUANTITATIVE TRAIT LOCI
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 90(23), 10972–10976.
1992 journal article
Correcting the bias of Wright's estimates of the number of genes affecting a quantitative character: A further improved method
Genetics, 131(4), 987.
1991 journal article
Variance of neutral genetic variances within and between populations for a quantitative character
Genetics, 129(2), 535.
1990 conference paper
How important is mutation for selection responses?
Proceedings of the 4th World Congress on Genetics Applied to Livestock Production, 13, 301–305.
1990 journal article
How informative is Wright's estimator of the number of genes affecting a quantitative character?
Genetics, 126(1), 235.
1990 journal article
LONG-TERM RESPONSE TO ARTIFICIAL SELECTION WITH MULTIPLE ALLELES - STUDY BY SIMULATIONS
THEORETICAL POPULATION BIOLOGY, 37(1), 254–272.
1989 journal article
A GENETIC MODEL OF INTERPOPULATION VARIATION AND COVARIATION OF QUANTITATIVE CHARACTERS
GENETICS RESEARCH, 53(3), 215–221.
1989 journal article
Effects of mutation on selection limits in finite populations with multiple alleles
Genetics, 122(4), 977.
1988 journal article
Long-Term Correlated Response, Interpopulation Covariation, and Interspecific Allometry
Evolution, 42(2), 363.
1987 journal article
Genotypic distribution at the limits to natural and artificial selection with mutation
Theoretical Population Biology, 32(1), 90–113.
1986 journal article
The selection limit due to the conflict between truncation and stabilizing selection with mutation
Genetics, 114, 1313–1328.
1986 thesis
Theoretical studies on genetic limits to natural and artificial selection with mutation
(Ph.D Thesis). Department of Genetics, The University of Edinburgh.
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