Zhaobang Zeng

Oloka, B. M., da Silva Pereira, G., Amankwaah, V. A., Mollinari, M., Pecota, K. V., Yada, B., … Yencho, G. C. (2021). Discovery of a major QTL for root-knot nematode (Meloidogyne incognita) resistance in cultivated sweetpotato (Ipomoea batatas). Theoretical and Applied Genetics, 134(7), 1945–1955. https://doi.org/10.1007/s00122-021-03797-z

da Silva Pereira, G., Mollinari, M., Qu, X., Thill, C., Zeng, Z.-B., Haynes, K., & Yencho, G. C. (2021). Quantitative Trait Locus Mapping for Common Scab Resistance in a Tetraploid Potato Full-Sib Population. Plant Disease, 105(10), 3048–3054. https://doi.org/10.1094/PDIS-10-20-2270-RE

da Silva Pereira, G., Mollinari, M., Schumann, M. J., Clough, M. E., Zeng, Z.-B., & Yencho, G. C. (2021). The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population. Heredity, 126(5), 817–830. https://doi.org/10.1038/s41437-021-00416-x

Zhou, C., Olukolu, B., Gemenet, D. C., Wu, S., Gruneberg, W., Cao, M. D., … Coin, L. J. M. (2020). Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations. Nature Genetics, 52(11), 1256–1264. https://doi.org/10.1038/s41588-020-00717-7

Gemenet, D. C., Lindqvist-Kreuze, H., De Boeck, B., da Silva Pereira, G., Mollinari, M., Zeng, Z.-B., … Campos, H. (2020). Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops. Theoretical and Applied Genetics, 133(12), 3345–3363. https://doi.org/10.1007/s00122-020-03673-2

Lara, L. A. de C., Santos, M. F., Jank, L., Chiari, L., Vilela, M. de M., Amadeu, R. R., … Garcia, A. A. F. (2019). Genomic Selection with Allele Dosage in Panicum maximum Jacq. G3-GENES GENOMES GENETICS, 9(8), 2463–2475. https://doi.org/10.1534/g3.118.200986

Lee, Y. C. G., Yang, Q., Chi, W., Turkson, S. A., Du, W. A., Kemkemer, C., … Zhuang, X. (2017). Genetic Architecture of Natural Variation Underlying Adult Foraging Behavior That Is Essential for Survival of Drosophila melanogaster. GENOME BIOLOGY AND EVOLUTION, 9(5), 1357–1369. https://doi.org/10.1093/gbe/evx089

Schumann, M. J., Zeng, Z.-B., Clough, M. E., & Yencho, G. C. (2017). Linkage map construction and QTL analysis for internal heat necrosis in autotetraploid potato. Theoretical and Applied Genetics, 130(10), 2045–2056. https://doi.org/10.1007/s00122-017-2941-1

Xiong, J. S., McKeand, S. E., Isik, F., Wegrzyn, J., Neale, D. B., Zeng, Z.-B., … Whetten, R. W. (2016). Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine. BMC Genetics, 17(1). https://doi.org/10.1186/s12863-016-0446-6

Laurie, C., Wang, S., Carlini-Garcia, L. A., & Zeng, Z.-B. (2014). Mapping epistatic quantitative trait loci. BMC GENETICS, 15. https://doi.org/10.1186/s12863-014-0112-9

Huang, L., Zhang, H. H., Zeng, Z.-B., & Bushel, P. R. (2013). Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification. Cancer Informatics, 12, CIN.S10212. https://doi.org/10.4137/cin.s10212

Kaddurah-Daouk, R., Yuan, P., Boyle, S. H., Matson, W., Wang, Z., Zeng, Z. B., … Drevets, W. (2012). Cerebrospinal Fluid Metabolome in Mood Disorders-Remission State has a Unique Metabolic Profile. Scientific Reports, 2(1). https://doi.org/10.1038/srep00667

Silva, L. D. C. E., Wang, S., & Zeng, Z.-B. (2012). Composite Interval Mapping and Multiple Interval Mapping: Procedures and Guidelines for Using Windows QTL Cartographer. In Methods in Molecular Biology (pp. 75–119). https://doi.org/10.1007/978-1-61779-785-9_6

Abo, R., Hebbring, S., Ji, Y., Zhu, H., Zeng, Z.-B., Batzler, A., … Weinshilboum, R. M. (2012). Merging pharmacometabolomics with pharmacogenomics using ‘1000 Genomes’ single-nucleotide polymorphism imputation. Pharmacogenetics and Genomics, 22(4), 247–253. https://doi.org/10.1097/fpc.0b013e32835001c9

Trupp, M., Zhu, H., Wikoff, W. R., Baillie, R. A., Zeng, Z.-B., Karp, P. D., … Kaddurah-Daouk, R. (2012). Metabolomics Reveals Amino Acids Contribute to Variation in Response to Simvastatin Treatment. PLoS ONE, 7(7), e38386. https://doi.org/10.1371/journal.pone.0038386

Silva, L. D. E., Wang, S. C., & Zeng, Z. B. (2012). Multiple trait multiple interval mapping of quantitative trait loci from inbred line crosses. BMC Genetics, 13.

Kaddurah-Daouk, R., Baillie, R. A., Zhu, H., Zeng, Z.-B., Wiest, M. M., Nguyen, U. T., … Krauss, R. M. (2011). Enteric Microbiome Metabolites Correlate with Response to Simvastatin Treatment. PLOS ONE, 6(10). https://doi.org/10.1371/journal.pone.0025482

Duarte, C. W., & Zeng, Z.-B. (2011). High-Confidence Discovery of Genetic Network Regulators in Expression Quantitative Trait Loci Data. GENETICS, 187(3), 955–964. https://doi.org/10.1534/genetics.110.124685

Chakraborty, S., & Zeng, Z. B. (2011). QTL Mapping for Days to Flowering under Drought Condition in Rice (Oryza sativa L.) Genome. Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 39(1), 58. https://doi.org/10.15835/nbha3915610

Silva, L. D. C. E., & Zeng, Z.-B. (2010). Current Progress on Statistical Methods for Mapping Quantitative Trait Loci from Inbred Line Crosses. JOURNAL OF BIOPHARMACEUTICAL STATISTICS, 20(2), 454–481. https://doi.org/10.1080/10543400903572845

Ji, Y., Hebbring, S., Zhu, H., Jenkins, G. D., Biernacka, J., Snyder, K., … Weinshilboum, R. M. (2010). Glycine and a Glycine Dehydrogenase (GLDC) SNP as Citalopram/Escitalopram Response Biomarkers in Depression: Pharmacometabolomics-Informed Pharmacogenomics. Clinical Pharmacology & Therapeutics, 89(1), 97–104. https://doi.org/10.1038/clpt.2010.250

Kaddurah-Daouk, R., Baillie, R. A., Zhu, H., Zeng, Z.-B., Wiest, M. M., Nguyen, U. T., … Krauss, R. M. (2010). Lipidomic analysis of variation in response to simvastatin in the Cholesterol and Pharmacogenetics Study. Metabolomics, 6(2), 191–201. https://doi.org/10.1007/s11306-010-0207-x

E Silva, L. D. C., Chang, S.-M., & Zeng, Z.-B. (2010). Power, sample size and confidence interval for quantitative trait loci mapping on multiple traits.

Hu, F., Liu, J. F., Zeng, Z. B., Ding, X. D., Yin, C. C., Gong, Y. Z., & Zhang, Q. (2010). QTL Identification Using Combined Linkage and Linkage Disequilibrium Mapping for Milk Production Traits on BTA6 in Chinese Holstein Population. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 23(10), 1261–1267. https://doi.org/10.5713/ajas.2010.10011

Wang, T., Jacob, H., Ghosh, S., Wang, X., & Zeng, Z.-B. (2009). A Joint Association Test for Multiple SNPs in Genetic Case-Control Studies. GENETIC EPIDEMIOLOGY, 33(2), 151–163. https://doi.org/10.1002/gepi.20368

Wang, T., & Zeng, Z.-B. (2009). Contribution of genetic effects to genetic variance components with epistasis and linkage disequilibrium. BMC GENETICS, 10. https://doi.org/10.1186/1471-2156-10-52

Kim, Y., Feng, S., & Zeng, Z.-B. (2009). Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains. Genetic Epidemiology, 33(2), 181–181. https://doi.org/10.1002/gepi.20349

Kim, Y. J., Feng, S., & Zeng, Z. B. (2009). Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains (vol 32, pg 301, 2008). Genetic Epidemiology, Vol. 33, pp. 181–181.

Zou, W., & Zeng, Z.-B. (2009). Multiple interval mapping for gene expression QTL analysis. GENETICA, 137(2), 125–134. https://doi.org/10.1007/s10709-009-9365-z

Weir, B. S., Hill, W. G., Zhu, J., & Zeng, Z.-B. (2009, June). The Third International Conference of Quantitative Genetics. GENETICA, Vol. 136, pp. 211–212. https://doi.org/10.1007/s10709-008-9315-1

Aylor, D. L., & Zeng, Z. B. (2008). From classical genetics to quantitative genetics to systems biology: Modeling epistasis. PLoS Genetics, 4(3).

Huang, L., Heinloth, A. N., Zeng, Z. B., Paules, R. S., & Bushel, P. R. (2008). Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants. BMC Genomics, 9.

Kim, Y., Feng, S., & Zeng, Z.-B. (2008). Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains. GENETIC EPIDEMIOLOGY, 32(4), 301–312. https://doi.org/10.1002/gepi.20305

Franco Garcia, A. A., Wang, S., Melchinger, A. E., & Zeng, Z.-B. (2008). Quantitative Trait Loci Mapping and The Genetic Basis of Heterosis in Maize and Rice. GENETICS, 180(3), 1707–1724. https://doi.org/10.1534/genetics.107.082867

Zou, W., & Zeng, Z.-B. (2008). Statistical Methods for Mapping Multiple QTL. International Journal of Plant Genomics, 2008, 1–8. https://doi.org/10.1155/2008/286561

Yang, R., Gao, H., Wang, X., Zhang, J., Zeng, Z.-B., & Wu, R. (2007). A semiparametric approach for composite functional mapping of dynamic quantitative traits. GENETICS, 177(3), 1859–1870. https://doi.org/10.1534/genetics.107.077321

Lai, C.-Q., Leips, J., Zou, W., Roberts, J. F., Wollenberg, K. R., Parnell, L. D., … Mackay, T. F. C. (2007). Speed-mapping quantitative trait loci using microarrays. NATURE METHODS, 4(10), 839–841. https://doi.org/10.1038/NMETH1084

Zeng, Z. B. (2007). The Hill–Robertson effect is a consequence of interplay between linkage, selection and drift: a commentary on ‘The effect of linkage on limits to artificial selection’ by W. G. Hill and A. Robertson. Genetics Research, 89(5-6), 309–310. https://doi.org/10.1017/s0016672308009506

Melchinger, A. E., Utz, H. F., Piepho, H.-P., Zeng, Z.-B., & Schoen, C. C. (2007). The role of epistasis in the manifestation of heterosis: A systems-oriented approach. GENETICS, 177(3), 1815–1825. https://doi.org/10.1534/genetics.107.077537

Zou, W., Aylor, D. L., & Zeng, Z. B. (2007). eQTL Viewer: visualizing how sequence variation affects genome-wide transcription. BMC Bioinformatics, 8(7).

Wang, T., Weir, B., & Zeng, Z. B. (2006). A population-based latent variable approach for association mapping of quantitative trait loci. ANNALS OF HUMAN GENETICS, 70, 506–523. https://doi.org/10.1111/j.1469-1809.2006.00264.x

Wang, T., & Zeng, Z. B. (2006). Models and partition of variance for quantitative trait loci with epistasis and linkage disequilibrium. BMC Genetics, 7.

Li, J., Wang, S., & Zeng, Z.-B. (2006). Multiple-interval mapping for ordinal traits. GENETICS, 173(3), 1649–1663. https://doi.org/10.1534/genetics.105.054619

Chen, J., Griffey, C. A., Maroof, M. A. S., Stromberg, E. L., Biyashev, R. M., Zhao, W., … Zeng, Z. (2006). Validation of two major quantitative trait loci for fusarium head blight resistance in Chinese wheat line W14. PLANT BREEDING, 125(1), 99–101. https://doi.org/10.1111/j.1439-0523.2006.01182.x

Kirst, M., Basten, C. J., Myburg, A. A., Zeng, Z. B., & Sederoff, R. R. (2005). Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid. GENETICS, 169(4), 2295–2303. https://doi.org/10.1534/genetics.104.039198

Liu, Y., & Zeng, Z. B. (2005). Mixture model equations for marker-assisted genetic evaluation. JOURNAL OF ANIMAL BREEDING AND GENETICS, 122(4), 229–239. https://doi.org/10.1111/j.1439-0388.2005.00525.x

Zeng, Z. B., Wang, T., & Zou, W. (2005). Modeling quantitative trait loci and interpretation of models. GENETICS, 169(3), 1711–1725. https://doi.org/10.1534/genetics.104.035857

Zeng, Z. B. (2005). QTL mapping and the genetic basis of adaptation: recent developments. GENETICA, 123(1-2), 25–37. https://doi.org/10.1007/s10709-004-2705-0

Tao, Y., Zeng, Z. B., Li, J., Hartl, D. L., & Laurie, C. C. (2003). Genetic dissection of hybrid Incompatibilities between Drosophila simulansand D. mauritiana. II. Mapping hybrid male sterility loci on the third chromosome. Genetics, 164(4), 1399–1418.

Zeng, Z.-B. (2003). Quantitative Trait Loci Mapping. In D. Cooper (Ed.), Nature encyclopedia of the human genome. New York: Nature Publishing Group.

Balding, D. J., Carothers, A. D., Marchini, J. L., Cardon, L. R., Vetta, A., Griffiths, B., … Gabrielson, E. (2002). Discussion on the meeting on 'Statistical modelling and analysis of genetic data'. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 64(4), 737–775. https://doi.org/10.1111/1467-9868.00359

Wu, R. L., Ma, C. X., Wu, S. S., & Zeng, Z. B. (2002). Linkage mapping of sex-specific differences. GENETICAL RESEARCH, 79(1), 85–96. https://doi.org/10.1017/s0016672301005389

Kao, C. H., & Zeng, Z. B. (2002). Modeling epistasis of quantitative trait loci using Cockerham's model. Genetics, 160(3), 1243–1261.

Wu, R. L., Ma, C. X., Painter, I., & Zeng, Z. B. (2002). Simultaneous maximum likelihood estimation of linkage and linkage phases in outcrossing species. THEORETICAL POPULATION BIOLOGY, 61(3), 349–363. https://doi.org/10.1006/tpbi.2002.1577

Wu, R. L., Gallo-Meagher, M., Littell, R. C., & Zeng, Z. B. (2001). A general polyploid model for analyzing gene segregation in outcrossing tetraploid species. Genetics, 159(2), 869–882.

Wu, S. S., Wu, R. L., Ma, C. X., Zeng, Z. B., Yang, M. C., & Casella, G. (2001). A multivalent pairing model of linkage analysis in autotetraploids. Genetics, 159(3), 1339–1350.

Weber, K., Eisman, R., Higgins, S., Morey, L., Patty, A., Tausek, M., & Zeng, Z. B. (2001). An analysis of polygenes affecting wing shape on chromosome 2 in Drosophila melanogaster. Genetics, 159(3), 1045–1057.

Wu, R. L., & Zeng, Z. B. (2001). Joint linkage and linkage disequilibrium mapping in natural populations. Genetics, 157(2), 899–909.

Yin, T. M., Huang, M. R., Wang, M. X., Zhu, L. H., Zeng, Z. B., & Wu, R. L. (2001). Preliminary interspecific genetic maps of the Populus genome constructed from RAPD markers. GENOME, 44(4), 602–609. https://doi.org/10.1139/gen-44-4-602

Zeng, Z.-B. (2001). QTL Mapping. In Encyclopedia of Genetics (pp. 1587–1593). https://doi.org/10.1006/rwgn.2001.1441

Zeng, Z.-B. (2001). Quantitative trait loci: statistical methods for mapping their positions. In E. C. R. Reeve & I. Black (Eds.), Encyclopedia of Genetics. London, UK: Fitzroy Dearborn Publishers.

Liu, Y. F., & Zeng, Z. B. (2000). A general mixture model approach for mapping quantitative trait loci from diverse cross designs involving multiple inbred lines. GENETICAL RESEARCH, 75(3), 345–355. https://doi.org/10.1017/S0016672300004493

Wu, R. L., Han, Y. F., Hu, J. J., Fang, J. J., Li, L., Li, M. L., & Zeng, Z. B. (2000). An integrated genetic map of Populus deltoides based on amplified fragment length polymorphisms. THEORETICAL AND APPLIED GENETICS, 100(8), 1249–1256. https://doi.org/10.1007/s001220051431

Zeng, Z. B., Liu, J. J., Stam, L. F., Kao, C. H., Mercer, J. M., & Laurie, C. C. (2000). Genetic architecture of a morphological shape difference between two Drosophila species. Genetics, 154(1), 299–310.

Vieira, C., Pasyukova, E. G., Zeng, Z. B., Hackett, J. B., Lyman, R. F., & Mackay, T. F. C. (2000). Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster. Genetics, 154(1), 213–227.

Luo, Z. W., Tao, S. H., & Zeng, Z. B. (2000). Inferring linkage disequilibrium between a polymorphic marker locus and a trait locus in natural populations. Genetics, 156(1), 457–467.

Wu, R., Li, B., & Zeng, Z.-B. (2000). Molecular dissection of quantitative traits: new perspectives from populus. In S. M. Jain & S. C. Minocha (Eds.), Molecular biology of woody plants (Vol. 1, pp. 475–490). Dordrecht; Boston: Kluwer Academic.

Rongling, W., Zeng, Z.-B., McKeand, & O'Malley, D. M. (2000). The case for molecular mapping in forest tree breeding. Plant Breeding Reviews, 19(2000), 41–68.

Weber, K., Eisman, R., Morey, L., Patty, A., Sparks, J., Tausek, M., & Zeng, Z. B. (1999). An analysis of polygenes affecting wing shape on chromosome 3 in Drosophila melanogaster. Genetics, 153(2), 773–786.

Zeng, Z. B., Kao, C. H., & Basten, C. J. (1999). Estimating the genetic architecture of quantitative traits. GENETICAL RESEARCH, 74(3), 279–289. https://doi.org/10.1017/S0016672399004255

Kao, C. H., Zeng, Z. B., & Teasdale, R. D. (1999). Multiple interval mapping for quantitative trait loci. Genetics, 152(3), 1203–1216.

Zeng, Z. B. (1997). Combining information from data in mapping analysis: use of multiple markers and multiple traits. Animal Biotechnology, 8(1), 145–150. https://doi.org/10.1080/10495399709525876

Kao, C. H., & Zeng, Z. B. (1997). General formulas for obtaining the MLEs and the asymptotic variance-covariance matrix in mapping quantitative trait loci when using the EM algorithm. BIOMETRICS, 53(2), 653–665. https://doi.org/10.2307/2533965

Jiang, C. J., & Zeng, Z. B. (1997). Mapping quantitative trait loci with dominant and missing markers in various crosses from two inbred lines. GENETICA, 101(1), 47–58. https://doi.org/10.1023/A:1018394410659

Basten, C. J., Weir, B. S., & Zeng, Z.-B. (1997). QTL Cartographer: a reference manual and tutorial for QTL mapping. Department of Statistics, NC State University.

True, JR, Liu, J. J., Stam, L. F., Zeng, Z. B., & Laurie, C. C. (1997). Quantitative genetic analysis of divergence in male secondary sexual traits between Drosophila simulans and Drosophila mauritiana. EVOLUTION, 51(3), 816–832. https://doi.org/10.2307/2411157

Nuzhdin, S. V., Pasyukova, E. G., Dilda, C. L., Zeng, Z. B., & Mackay, T. F. C. (1997). Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 94(18), 9734–9739. https://doi.org/10.1073/pnas.94.18.9734

Doerge, R. W., Zeng, Z. B., & Weir, B. S. (1997). Statistical issues in the search for genes? Statistical Science, 12(1997), 195–219.

Cockerham, C. C., & Zeng, Z.-B. (1996). Design III with marker loci. Genetics, 143(3), 1437–1456. https://doi.org/10.1093/genetics/143.3.1437

Liu, J., Mercer, J. M., Stam, L. F., Gibson, G. C., Zeng, Z.-B., & Laurie, C. C. (1996). Genetic analysis of a morphological shape difference in the male genitalia of Drosophila simulans and D. mauritiana. Genetics, 142(4), 1129–1145. https://doi.org/10.1093/genetics/142.4.1129

Zeng, Z.-B., & Weir, B. S. (1996). Statistical methods for mapping quantitative trait loci. Acta Agronomica Sinica, 22, 535–549.

Dragani, T. A., Zeng, Z.-B., Canzian, F., Gariboldi, M., Ghilarducci, M. T., Manenti, G., & Pierotti, M. A. (1995). Mapping of body weight loci on mouse Chromosome X. Mammalian Genome, 6(11), 778–781. https://doi.org/10.1007/bf00539002

Jiang, C. J., & Zeng, Z. B. (1995). Multiple-trait analysis of genetic-mapping for quantitative trait loci. Genetics, 140(3), 1111–1127.

Zeng, Z.-B. (1994). A composite interval mapping method for locating multiple QTLs. Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, 21, 37–40.

Zeng, Z. B. (1994). Precision mapping of quantitative trait loci. Genetics, 136(4), 1457–1468.

Basten, C. J., Weir, B. S., & Zeng, Z.-B. (1994). ZMAP---A QTL Cartographer. Proceedings of the 5th World Congress on Genetics Applied to Livestock Production, 22, 65–66.

Zeng, Z. B., & Cockerham, C. C. (1993). Mutation models and quantitative genetic variation. Genetics, 133(3), 729.

ZENG, Z. B. (1993). THEORETICAL BASIS FOR SEPARATION OF MULTIPLE LINKED GENE EFFECTS IN MAPPING QUANTITATIVE TRAIT LOCI. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 90(23), 10972–10976. https://doi.org/10.1073/pnas.90.23.10972

Zeng, Z. B. (1992). Correcting the bias of Wright's estimates of the number of genes affecting a quantitative character: A further improved method. Genetics, 131(4), 987.

Zeng, Z. B., & Cockerham, C. C. (1991). Variance of neutral genetic variances within and between populations for a quantitative character. Genetics, 129(2), 535.

Zeng, Z.-B., & Tachida, H. (1990). How important is mutation for selection responses? Proceedings of the 4th World Congress on Genetics Applied to Livestock Production, 13, 301–305.

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Zeng, Z. B., Tachida, H., & Cockerham, C. C. (1989). Effects of mutation on selection limits in finite populations with multiple alleles. Genetics, 122(4), 977.

Zeng, Z.-B. (1988). Long-Term Correlated Response, Interpopulation Covariation, and Interspecific Allometry. Evolution, 42(2), 363. https://doi.org/10.2307/2409239

Zeng, Z.-B. (1987). Genotypic distribution at the limits to natural and artificial selection with mutation. Theoretical Population Biology, 32(1), 90–113. https://doi.org/10.1016/0040-5809(87)90042-6

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