Thomas Wiegers Davis, A. P., Wiegers, T. C., Sciaky, D., Barkalow, F., Strong, M., Wyatt, B., … Mattingly, C. J. (2024, October 10). Comparative toxicogenomics database's 20th anniversary: update 2025. NUCLEIC ACIDS RESEARCH, Vol. 10. https://doi.org/10.1093/nar/gkae883 Wyatt, B., Davis, A. P., Wiegers, T. C., Wiegers, J., Abrar, S., Sciaky, D., … Mattingly, C. J. (2024). Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms. FRONTIERS IN TOXICOLOGY, 6. https://doi.org/10.3389/ftox.2024.1437884 Davis, A. P., Wiegers, T. C., Wiegers, J., Wyatt, B., Johnson, R. J., Sciaky, D., … Mattingly, C. J. (2023). CTD tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health. TOXICOLOGICAL SCIENCES, 195(2), 155–168. https://doi.org/10.1093/toxsci/kfad069 Davis, A. P., Wiegers, T. C., Johnson, R. J., Sciaky, D., Wiegers, J., & Mattingly, C. J. (2022, September 28). Comparative Toxicogenomics Database (CTD): update 2023. NUCLEIC ACIDS RESEARCH, Vol. 9. https://doi.org/10.1093/nar/gkac833 Davis, A. P., Wiegers, T. C., Wiegers, J., Grondin, C. J., Johnson, R. J., Sciaky, D., & Mattingly, C. J. (2021). CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies. CURRENT RESEARCH IN TOXICOLOGY, 2, 128–139. https://doi.org/10.1016/j.crtox.2021.03.001 Grondin, C. J., Davis, A. P., Wiegers, J. A., Wiegers, T. C., Sciaky, D., Johnson, R. J., & Mattingly, C. J. (2021). Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database. CURRENT RESEARCH IN TOXICOLOGY, 2, 272–281. https://doi.org/10.1016/j.crtox.2021.08.001 Pinkhasova, D. V., Jameson, L. E., Conrow, K. D., Simeone, M. P., Davis, A. P., Wiegers, T. C., … Leung, M. C. K. (2021). Regulatory status of pesticide residues in cannabis: Implications to medical use in neurological diseases. CURRENT RESEARCH IN TOXICOLOGY, 2, 140–148. https://doi.org/10.1016/j.crtox.2021.02.007 Davis, A. P., Grondin, C. J., Johnson, R. J., Sciaky, D., Wiegers, J., Wiegers, T. C., & Mattingly, C. J. (2021). Comparative Toxicogenomics Database (CTD): update 2021. NUCLEIC ACIDS RESEARCH, 49(D1), D1138–D1143. https://doi.org/10.1093/nar/gkaa891 Davis, A. P., Wiegers, T. C., Grondin, C. J., Johnson, R. J., Sciaky, D., Wiegers, J., & Mattingly, C. J. (2020). Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease. TOXICOLOGICAL SCIENCES, 177(2), 392–404. https://doi.org/10.1093/toxsci/kfaa113 Grondin, C. J., Davis, A. P., Wiegers, T. C., Wiegers, J. A., & Mattingly, C. J. (2018). Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database. ENVIRONMENTAL HEALTH PERSPECTIVES, 126(1). https://doi.org/10.1289/ehp2873 Davis, A. P., Wiegers, T. C., Wiegers, J., Johnson, R. J., Sciaky, D., Grondin, C. J., & Mattingly, C. J. (2018). Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways. TOXICOLOGICAL SCIENCES, 165(1), 145–156. https://doi.org/10.1093/toxsci/kfy131 Davis, A. P., Grondin, C. J., Johnson, R. J., Sciaky, D., McMorran, R., Wiegers, J., … Mattingly, C. J. (2019). The Comparative Toxicogenomics Database: update 2019. NUCLEIC ACIDS RESEARCH, 47(D1), D948–D954. https://doi.org/10.1093/nar/gky868 Grondin, C. J., Davis, A. P., Wiegers, T. C., King, B. L., Wiegers, J. A., Reif, D. M., … Mattingly, C. J. (2016). Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. Environmental Health Perspectives, 124(10), 1592–1599. https://doi.org/10.1289/ehp174 Wei, C.-H., Peng, Y., Leaman, R., Davis, A. P., Mattingly, C. J., Li, J., … Lu, Z. (2016). Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/baw032 Li, J., Sun, Y. P., Johnson, R. J., Sciaky, D., Wei, C. H., Leaman, R., … al. (2016). BioCreative V CDR task corpus: a resource for chemical disease relation extraction. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/baw068 Davis, A. P., Wiegers, T. C., King, B. L., Wiegers, J., Grondin, C. J., Sciaky, D., … Mattingly, C. J. (2016). Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database. PLOS ONE, 11(5). https://doi.org/10.1371/journal.pone.0155530 Davis, A. P., Grondin, C. J., Johnson, R. J., Sciaky, D., King, B. L., McMorran, R., … Mattingly, C. J. (2017). The Comparative Toxicogenomics Database: update 2017. NUCLEIC ACIDS RESEARCH, 45(D1), D972–D978. https://doi.org/10.1093/nar/gkw838 Pelletier, D., Wiegers, T. C., Enayetallah, A., Kibbey, C., Gosink, M., Koza-Taylor, P., … Lawton, M. (2016). ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/baw062 Comeau, D. C., Batista-Navarro, R. T., Dai, H.-J., Dogan, R. I., Yepes, A. J., Khare, R., … Wilbur, W. J. (2014). BioC interoperability track overview. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bau053 Arighi, C. N., Wu, C. H., Cohen, K. B., Hirschman, L., Krallinger, M., Valencia, A., … Wiegers, T. C. (2014, May 22). BioCreative-IV virtual issue. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bau039 Davis, A. P., Grondin, C. J., Lennon-Hopkins, K., Saraceni-Richards, C., Sciaky, D., King, B. L., … Mattingly, C. J. (2015). The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. NUCLEIC ACIDS RESEARCH, 43(D1), D914–D920. https://doi.org/10.1093/nar/gku935 Wiegers, T. C., Davis, A. P., & Mattingly, C. J. (2014). Web services-based text-mining demonstrates broad impacts for interoperability and process simplification. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bau050 Davis, A. P., Wiegers, T. C., Roberts, P. M., King, B. L., Lay, J. M., Lennon-Hopkins, K., … Mattingly, C. J. (2013). A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bat080 Comeau, D. C., Dogan, R. I., Ciccarese, P., Cohen, K. B., Krallinger, M., Leitner, F., … Wilbur, W. J. (2013). BioC: a minimalist approach to interoperability for biomedical text processing. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bat064 Davis, A. P., Wiegers, T. C., Johnson, R. J., Lay, J. M., Lennon-Hopkins, K., Saraceni-Richards, C., … Mattingly, C. J. (2013). Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database. PLOS ONE, 8(4). https://doi.org/10.1371/journal.pone.0058201 Wu, C. H., Arighi, C. N., Cohen, K. B., Hirschman, L., Krallinger, M., Lu, Z. Y., … al. (2012, December 5). BioCreative-2012 Virtual Issue. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bas049 Wiegers, T. C., Davis, A. P., & Mattingly, C. J. (2012). Collaborative biocuration--text-mining development task for document prioritization for curation. Database, 2012(0), bas037–bas037. https://doi.org/10.1093/database/bas037 King, B. L., Davis, A. P., Rosenstein, M. C., Wiegers, T. C., & Mattingly, C. J. (2012). Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database. PLOS ONE, 7(11). https://doi.org/10.1371/journal.pone.0046524 Davis, A. P., Johnson, R. J., Lennon-Hopkins, K., Sciaky, D., Rosenstein, M. C., Wiegers, T. C., & Mattingly, C. J. (2012). Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database. Database-The Journal of Biological Databases and Curation.