Tzung Fu Hsieh

Distinct regulatory pathways contribute to dynamic CHH methylation patterns in transposable elements throughout Arabidopsis embryogenesis

FRONTIERS IN PLANT SCIENCE, 14.

Embryo-specific epigenetic mechanisms reconstitute the CHH methylation landscape during Arabidopsis embryogenesis

Hsieh, P.-H., Frost, J. M., Choi, Y., Hsieh, T.-F., Zilberman, D., & Fischer, R. L. (2023, April 8).

H2A.Xmutants exhibit enhanced DNA demethylation inArabidopsis thaliana

Frost, J. M., Lee, J., Hsieh, P.-H., Lin, S. J. H., Min, Y., Bauer, M., … Fischer, R. L. (2023, January 9).

How ambient temperature affects the heading date of foxtail millet (Setaria italica)

Frontiers in Plant Science, 14.

Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae

Shin, H., Park, J. E., Park, H. R., Choi, W. L., Yu, S. H., Koh, W., … Huh, J. H. (2022, April 28). NEW PHYTOLOGIST, Vol. 4.

Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape

Hsieh, T.-F., Han, Q., Hung, Y.-H., Zhang, C., Bartels, A., Rea, M., … Xiao, W. (2022, October 20).

Loss of linker histone H1 in the maternal genome influences DEMETER-mediated demethylation and affects the endosperm DNA methylation landscape

FRONTIERS IN PLANT SCIENCE, 13.

Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens

MICROBIOLOGY SPECTRUM, 9(2).

Comparative phylogenomic analysis reveals evolutionary genomic changes and novel toxin families in endophytic Liberibacter pathogens

Tan, Y., Wang, C., Schneider, T., Li, H., Souza, R. F., Tang, X., … Zhang, D. (2021, June 5). (Vol. 6). Vol. 6.

Epigenetic remodeling by DNA glycosylases during rice reproduction

Li, M., Cui, Q., Zhang, X.-Q., & Hsieh, T.-F. (2021, September 6). MOLECULAR PLANT, Vol. 14, pp. 1433–1435.

Identification of mixed linkage beta-glucan quantitative trait loci and evaluation of AsCslF6 homoeologs in hexaploid oat

CROP SCIENCE, 60(2), 914–933.

Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice

Rice, 12(1).

Epigenetics Regulates Reproductive Development in Plants

Plants, 8(12), 564.

Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice

Rice, 12(1).

Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth

Plant Molecular Biology, 100(1-2), 151–161.

The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis

Proceedings of the National Academy of Sciences, 116(35), 17563–17571.

Dynamic DNA Methylation in Plant Growth and Development

International Journal of Molecular Sciences, 19(7), 2144.

Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems

Molecular Plant, 11(2), 245–256.

Sexual and Non-sexual Reproduction

In Advances in Botanical Research (Vol. 88, pp. 117–163).

A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter

Plant Molecular Biology, 94(1-2), 137–148.

Epigenetic Reprogramming During Plant Reproduction

In Plant Epigenetics (pp. 405–425).

Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development

Proceedings of the National Academy of Sciences, 114(45), E9730–E9739.

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement

The Plant Genome, 9(2), 0.

A Tug of war for DNA methylation

Nature Plants, 2(11).

Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution

Molecular Biology and Evolution, 33(11), 2947–2959.

Epigenetics: A tug of war for DNA methylation.

Nature Plants.

FIE, a nuclear PRC2 protein, forms cytoplasmic complexes inArabidopsis thaliana

Journal of Experimental Botany, 67(21), 6111–6123.

A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation

Plant Physiology, 169(2), 971–985.

Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm

PLOS ONE, 10(2), e0117431.

Whole-Genome DNA Methylation Profiling with Nucleotide Resolution

In Methods in Molecular Biology (Vol. 1284, pp. 27–40).

The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes

Proceedings of the National Academy of Sciences, 111(45), 16166–16171.

Epigenetic Control of Seed Gene Imprinting

In Seed Genomics (pp. 63–82).

Heritable Epigenetic Variation and its Potential Applications for Crop Improvement

Plant Breeding and Biotechnology, 1(4), 307–319.

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

Science, 337(6100), 1360–1364.

MethylCoder: software pipeline for bisulfite-treated sequences

Bioinformatics, 27(17), 2435–2436.

Regulation of imprinted gene expression in Arabidopsis endosperm

Proceedings of the National Academy of Sciences, 108(5), 1755–1762.

Genome-Wide Demethylation of Arabidopsis Endosperm

Science, 324(5933), 1451–1454.

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis

Proceedings of the National Academy of Sciences, 105(8), 3151–3156.

Cellular Programming of Plant Gene Imprinting

Cell, 132(5), 735–744.

Endosperm gene imprinting and seed development

Current Opinion in Genetics & Development, 17(6), 480–485.

Genomic Imprinting in Arabidopsis thaliana and Zea mays

In Plant Cell Monographs (pp. 219–239).

DEMETER DNA Glycosylase Establishes MEDEA Polycomb Gene Self-Imprinting by Allele-Specific Demethylation

Cell, 124(3), 495–506.

Patenting Applied to Genetic Sequence Information

Biotechnology and Genetic Engineering Reviews, 23(1), 317–330.

BIOLOGY OF CHROMATIN DYNAMICS

Annual Review of Plant Biology, 56(1), 327–351.

From flour to flower: how Polycomb group proteins influence multiple aspects of plant development

Trends in Plant Science, 8(9), 439–445.

Genomic analysis of Arabidopsis gene expression in response to a systemic fungicide

In Genomics of Plants and Fungi (pp. 251–268). CRC Press.

Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily

Plant Molecular Biology, 50(2), 237–248.

Gene expression in the developing mouse retina by EST sequencing and microarray analysis.

Nucleic Acids Research.

Identification of estrogen-induced genes downregulated by AhR agonists in MCF-7 breast cancer cells using suppression subtractive hybridization

Gene, 262(1-2), 207–214.

The use of RT-PCR differential display in single-celled organisms and plant tissues

Differential Display: A Practical Approach, (224), 83.

Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco.

Plant Physiology.

Plant P-Hydroxyphenylpyruvate Dioxygenase: A Target for New Bleaching Herbicides

In Photosynthesis: Mechanisms and Effects (pp. 3861–3864).

Molecular approaches to identify novel genes expressed in Arabidopsis thaliana.

SAAS Bulletin, Biochemistry and Biotechnology.

Homeobox genes expressed in Arabidopsis embryo

PLANT PHYSIOLOGY, 111(2), 733–733.

Identification of novel mRNAs in immature seeds of Arabidopsis thaliana.

SAAS Bulletin, Biochemistry and Biotechnology.

Identification of phospholipase activities in the exotoxin of Edwardsiella tarda

Reports On Fish Disease Research, 29, 39–46.