Works (55)

Updated: April 18th, 2023 07:24

2023 article

Embryo-specific epigenetic mechanisms reconstitute the CHH methylation landscape during Arabidopsis embryogenesis

Hsieh, P.-H., Frost, J. M., Choi, Y., Hsieh, T.-F., Zilberman, D., & Fischer, R. L. (2023, April 8).

Source: ORCID
Added: April 9, 2023

2023 article

H2A.Xmutants exhibit enhanced DNA demethylation inArabidopsis thaliana

Frost, J. M., Lee, J., Hsieh, P.-H., Lin, S. J. H., Min, Y., Bauer, M., … Fischer, R. L. (2023, January 9).

By: J. Frost*, J. Lee*, P. Hsieh*, S. Lin*, Y. Min*, M. Bauer*, A. Runkel*, H. Cho* ...

Source: ORCID
Added: January 10, 2023

2023 journal article

How ambient temperature affects the heading date of foxtail millet (Setaria italica)

Frontiers in Plant Science, 14.

By: Y. Huang*, Y. Wang, Y. Choong, H. Huang, Y. Chen, T. Hsieh, Y. Lin

Source: ORCID
Added: March 4, 2023

2022 article

Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae

Shin, H., Park, J. E., Park, H. R., Choi, W. L., Yu, S. H., Koh, W., … Huh, J. H. (2022, April 28). NEW PHYTOLOGIST, Vol. 4.

By: H. Shin*, J. Park*, H. Park*, W. Choi*, S. Yu*, W. Koh*, S. Kim*, H. Soh* ...

author keywords: allopolyploidy; Brassicaceae; DNA methylation; epigenome; genome divergence; hybrid; xBrassicoraphanus
Sources: Web Of Science, ORCID
Added: May 10, 2022

2022 article

Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape

Hsieh, T.-F., Han, Q., Hung, Y.-H., Zhang, C., Bartels, A., Rea, M., … Xiao, W. (2022, October 20).

By: T. Hsieh, Q. Han*, Y. Hung n, C. Zhang n, A. Bartels*, M. Rea*, H. Yang*, C. Park* ...

Source: ORCID
Added: October 21, 2022

2022 journal article

Loss of linker histone H1 in the maternal genome influences DEMETER-mediated demethylation and affects the endosperm DNA methylation landscape

FRONTIERS IN PLANT SCIENCE, 13.

By: Q. Han*, Y. Hung, C. Zhang, A. Bartels, M. Rea, H. Yang, C. Park, X. Zhang ...

author keywords: epigenetics; DNA demethylation; gene imprinting; DNA glycosylase; linker histone H1
Sources: Web Of Science, ORCID
Added: January 23, 2023

2021 journal article

Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens

MICROBIOLOGY SPECTRUM, 9(2).

By: Y. Tan*, C. Wang*, T. Schneider*, H. Li*, R. Souza*, X. Tang*, K. Grimm*, T. Hsieh ...

author keywords: Liberibacter pathogens; Huanglongbing; zebra chip; toxins; prophages; pathogenesis; evolution; comparative genomics
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 article

Comparative phylogenomic analysis reveals evolutionary genomic changes and novel toxin families in endophytic Liberibacter pathogens

Tan, Y., Wang, C., Schneider, T., Li, H., Souza, R. F., Tang, X., … Zhang, D. (2021, June 5). (Vol. 6). Vol. 6.

By: Y. Tan*, C. Wang*, T. Schneider*, H. Li*, R. Souza*, X. Tang*, T. Hsieh, X. Wang*, X. Li n, D. Zhang*

Source: ORCID
Added: June 6, 2021

2021 article

Epigenetic remodeling by DNA glycosylases during rice reproduction

Li, M., Cui, Q., Zhang, X.-Q., & Hsieh, T.-F. (2021, September 6). MOLECULAR PLANT, Vol. 14, pp. 1433–1435.

By: M. Li, Q. Cui n, X. Zhang* & T. Hsieh

Sources: ORCID, Web Of Science
Added: August 24, 2021

2020 journal article

Identification of mixed linkage beta-glucan quantitative trait loci and evaluation of AsCslF6 homoeologs in hexaploid oat

CROP SCIENCE, 60(2), 914–933.

By: M. Fogarty*, S. Smith, J. Sheridan*, G. Hu*, E. Islamovic*, R. Reid, E. Jackson*, P. Maughan* ...

Sources: Web Of Science, ORCID
Added: July 13, 2020

2019 journal article

Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice

Rice, 12(1).

By: X. Luan*, S. Liu*, S. Ke*, H. Dai*, X. Xie*, T. Hsieh, X. Zhang*

author keywords: Rice; lncRNA; Epigenetic; Panicle; Pseudogene
Sources: Web Of Science, ORCID, Crossref
Added: April 22, 2019

2019 journal article

Epigenetics Regulates Reproductive Development in Plants

Plants, 8(12), 564.

By: Q. Han, A. Bartels*, X. Cheng*, A. Meyer*, Y. An*, T. Hsieh, W. Xiao*

author keywords: DNA methylation; dynamics; Polycomb group proteins; histone modifications; epigenetics; chromatin; siRNA; RdDM; gametogenesis; seed development
Sources: ORCID, Crossref
Added: December 3, 2019

2019 journal article

Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice

Rice, 12(1).

By: S. Ke*, S. Liu*, X. Luan*, X. Xie*, T. Hsieh & X. Zhang*

author keywords: Rice; PCD; Glycosylation; Senescence; Ethylene
Sources: Web Of Science, ORCID, Crossref
Added: March 4, 2019

2019 journal article

Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth

Plant Molecular Biology, 100(1-2), 151–161.

By: S. Ke*, X. Luan*, J. Liang*, Y. Hung, T. Hsieh & X. Zhang*

author keywords: Rice; Semi-dwarf; Lignin; Lodging resistance; Leucine-rich repeat extensin-like protein; OsPEX1
Sources: Web Of Science, ORCID, Crossref
Added: June 4, 2019

2019 journal article

The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis

Proceedings of the National Academy of Sciences, 116(35), 17563–17571.

By: C. Zhang n, Y. Hung n, H. Rim*, D. Zhang*, J. Frost*, H. Shin*, H. Jang*, F. Liu n ...

author keywords: gene imprinting; active DNA demethylation; endosperm development; epigenetic reprogramming; Arabidopsis thaliana
Sources: ORCID, Crossref
Added: September 13, 2019

2018 journal article

Dynamic DNA Methylation in Plant Growth and Development

International Journal of Molecular Sciences, 19(7), 2144.

By: A. Bartels*, Q. Han*, P. Nair*, L. Stacey*, H. Gaynier, M. Mosley*, Q. Huang*, J. Pearson* ...

author keywords: DNA methylation; methylome; seed; development; gene expression; dynamics; epigenetics; transposable element; plant
Sources: ORCID, Crossref
Added: September 13, 2019

2018 journal article

Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems

Molecular Plant, 11(2), 245–256.

By: L. Lowder*, J. Zhou*, Y. Zhang*, A. Malzahn*, Z. Zhong*, T. Hsieh, D. Voytas*, Y. Zhang*, Y. Qi*

author keywords: CRISPR; gRNA2.0; MS2-VP64; TALE-VP64; multiplex; transcriptional activation
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2018 chapter

Sexual and Non-sexual Reproduction

In Advances in Botanical Research (Vol. 88, pp. 117–163).

By: Y. Hung, F. Liu n, X. Zhang n, W. Xiao* & T. Hsieh

Sources: ORCID, Crossref, Web Of Science
Added: January 7, 2019

2017 journal article

A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter

Plant Molecular Biology, 94(1-2), 137–148.

By: X. Zeng*, R. Tang*, H. Guo*, S. Ke*, B. Teng*, Y. Hung, Z. Xu*, X. Xie* ...

author keywords: Rice; ABC transporter; Iron transport; Chloroplast development
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 chapter

Epigenetic Reprogramming During Plant Reproduction

In Plant Epigenetics (pp. 405–425).

By: J. Lin* & T. Hsieh

author keywords: Epigenetics; Reprogramming; Gametogenesis; Reproduction; DNA Methylation; Active DNA Demethylation; Chromatin Remodeling; Transgenerational Inheritance; siRNAs
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development

Proceedings of the National Academy of Sciences, 114(45), E9730–E9739.

By: J. Lin*, B. Le*, M. Chen*, K. Henry*, J. Hur*, T. Hsieh, P. Chen*, J. Pelletier* ...

author keywords: seed development; DNA methylation; soybean; Arabidopsis; transposon
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement

The Plant Genome, 9(2), 0.

By: A. Chaffin*, Y. Huang*, S. Smith, W. Bekele*, E. Babiker*, B. Gnanesh*, B. Foresman*, S. Blanchard* ...

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

A Tug of war for DNA methylation

Nature Plants, 2(11).

By: T. Hsieh

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution

Molecular Biology and Evolution, 33(11), 2947–2959.

By: I. Mendizabal*, L. Shi*, T. Keller*, G. Konopka*, T. Preuss, T. Hsieh, E. Hu*, Z. Zhang* ...

author keywords: DNA methylation; human brain evolution; transcriptional divergence; differentially methylated regions; epigenomes
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Epigenetics: A tug of war for DNA methylation.

Nature Plants.

Source: ORCID
Added: September 13, 2019

2016 journal article

FIE, a nuclear PRC2 protein, forms cytoplasmic complexes inArabidopsis thaliana

Journal of Experimental Botany, 67(21), 6111–6123.

By: M. Oliva*, Y. Butenko*, T. Hsieh, O. Hakim*, A. Katz*, N. Smorodinsky*, D. Michaeli*, R. Fischer*, N. Ohad*

author keywords: Cytoplasm; FIE; MEA; PcG; Polycomb complex; PRC2
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation

Plant Physiology, 169(2), 971–985.

By: L. Lowder*, D. Zhang*, N. Baltes*, J. Paul*, X. Tang*, X. Zheng*, D. Voytas*, T. Hsieh ...

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm

PLOS ONE, 10(2), e0117431.

By: C. Jeong*, G. Park*, H. Yun*, T. Hsieh, Y. Choi*, Y. Choi*, J. Lee*

Ed(s): M. Sun

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 chapter

Whole-Genome DNA Methylation Profiling with Nucleotide Resolution

In Methods in Molecular Biology (Vol. 1284, pp. 27–40).

By: T. Hsieh

author keywords: 5-Methylcytosine; Epigenetics; SPRI; DNA methylome; Bisulfite conversion; Next-gen sequencing
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2014 journal article

The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes

Proceedings of the National Academy of Sciences, 111(45), 16166–16171.

By: Z. Mérai*, N. Chumak*, M. García-Aguilar*, T. Hsieh, T. Nishimura*, V. Schoft*, J. Bindics*, L. Ślusarz* ...

author keywords: centromere disassembly; heterochromatin decondensation; chromosome dynamics; rDNA activation; pollen tip growth
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 chapter

Epigenetic Control of Seed Gene Imprinting

In Seed Genomics (pp. 63–82).

By: C. Ibarra*, J. Frost*, J. Shin*, T. Hsieh & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2013 journal article

Heritable Epigenetic Variation and its Potential Applications for Crop Improvement

Plant Breeding and Biotechnology, 1(4), 307–319.

By: C. Zhang n & T. Hsieh

Sources: ORCID, Crossref
Added: September 13, 2019

2012 journal article

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

Science, 337(6100), 1360–1364.

By: C. Ibarra*, X. Feng*, V. Schoft*, T. Hsieh, R. Uzawa*, J. Rodrigues*, A. Zemach*, N. Chumak* ...

Sources: ORCID, Crossref
Added: September 13, 2019

2011 journal article

MethylCoder: software pipeline for bisulfite-treated sequences

Bioinformatics, 27(17), 2435–2436.

By: B. Pedersen*, T. Hsieh, C. Ibarra* & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2011 journal article

Regulation of imprinted gene expression in Arabidopsis endosperm

Proceedings of the National Academy of Sciences, 108(5), 1755–1762.

By: T. Hsieh, J. Shin, R. Uzawa, P. Silva, S. Cohen, M. Bauer, M. Hashimoto, R. Kirkbride ...

author keywords: epigenetics; gene imprinting; angiosperm reproduction; DNA demethylation
Sources: ORCID, Crossref
Added: September 13, 2019

2009 journal article

Genome-Wide Demethylation of Arabidopsis Endosperm

Science, 324(5933), 1451–1454.

By: T. Hsieh, C. Ibarra*, P. Silva*, A. Zemach*, L. Eshed-Williams*, R. Fischer*, D. Zilberman*

Sources: ORCID, Crossref
Added: September 13, 2019

2008 journal article

Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis

Proceedings of the National Academy of Sciences, 105(8), 3151–3156.

By: S. Stone*, S. Braybrook*, S. Paula*, L. Kwong*, J. Meuser*, J. Pelletier*, T. Hsieh, R. Fischer*, R. Goldberg*, J. Harada*

author keywords: seed development; totipotency
Sources: ORCID, Crossref
Added: September 13, 2019

2008 journal article

Cellular Programming of Plant Gene Imprinting

Cell, 132(5), 735–744.

By: J. Huh*, M. Bauer*, T. Hsieh & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2007 journal article

Endosperm gene imprinting and seed development

Current Opinion in Genetics & Development, 17(6), 480–485.

By: J. Huh*, M. Bauer*, T. Hsieh & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2007 chapter

Genomic Imprinting in Arabidopsis thaliana and Zea mays

In Plant Cell Monographs (pp. 219–239).

By: J. Penterman*, J. Huh*, T. Hsieh & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2006 journal article

DEMETER DNA Glycosylase Establishes MEDEA Polycomb Gene Self-Imprinting by Allele-Specific Demethylation

Cell, 124(3), 495–506.

By: M. Gehring*, J. Huh*, T. Hsieh, J. Penterman*, Y. Choi*, J. Harada*, R. Goldberg*, R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2006 journal article

Patenting Applied to Genetic Sequence Information

Biotechnology and Genetic Engineering Reviews, 23(1), 317–330.

By: M. Duval* & T. Hsieh

Sources: Crossref, ORCID
Added: January 4, 2020

2005 journal article

BIOLOGY OF CHROMATIN DYNAMICS

Annual Review of Plant Biology, 56(1), 327–351.

By: T. Hsieh & R. Fischer*

author keywords: chromatin remodeling; epigenetic inheritance; histone modification; DNA methylation; RNA interference
Sources: ORCID, Crossref
Added: September 13, 2019

2003 journal article

From flour to flower: how Polycomb group proteins influence multiple aspects of plant development

Trends in Plant Science, 8(9), 439–445.

By: T. Hsieh, O. Hakim*, N. Ohad* & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2003 chapter

Genomic analysis of Arabidopsis gene expression in response to a systemic fungicide

In Genomics of Plants and Fungi (pp. 251–268). CRC Press.

By: H. Chuang, T. Hsieh, M. Duval & T. Thomas

Source: ORCID
Added: September 13, 2019

2002 journal article

Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily

Plant Molecular Biology, 50(2), 237–248.

By: M. Duval*, T. Hsieh, S. Kim* & T. Thomas*

author keywords: DNA-binding domain; shoot meristem; transcriptional activation
Sources: ORCID, Crossref
Added: September 13, 2019

2001 journal article

Gene expression in the developing mouse retina by EST sequencing and microarray analysis.

Nucleic Acids Research.

Source: ORCID
Added: September 13, 2019

2001 journal article

Identification of estrogen-induced genes downregulated by AhR agonists in MCF-7 breast cancer cells using suppression subtractive hybridization

Gene, 262(1-2), 207–214.

By: I. Chen*, T. Hsieh, T. Thomas* & S. Safe*

author keywords: antiestrogens; gene expression
Sources: ORCID, Crossref
Added: September 13, 2019

2000 journal article

The use of RT-PCR differential display in single-celled organisms and plant tissues

Differential Display: A Practical Approach, (224), 83.

By: M. Nuccio, T. Hsieh & T. Thomas

Source: ORCID
Added: September 13, 2019

1999 journal article

Characterization and subcellular compartmentation of recombinant 4-hydroxyphenylpyruvate dioxygenase from Arabidopsis in transgenic tobacco.

Plant Physiology.

Source: ORCID
Added: September 13, 2019

1998 chapter

Plant P-Hydroxyphenylpyruvate Dioxygenase: A Target for New Bleaching Herbicides

In Photosynthesis: Mechanisms and Effects (pp. 3861–3864).

By: I. Garcia*, M. Rodgers*, R. Pépin*, T. Hsieh & M. Matringe*

Sources: ORCID, Crossref
Added: September 13, 2019

1997 journal article

Molecular approaches to identify novel genes expressed in Arabidopsis thaliana.

SAAS Bulletin, Biochemistry and Biotechnology.

Source: ORCID
Added: September 13, 2019

1996 conference paper

Homeobox genes expressed in Arabidopsis embryo

PLANT PHYSIOLOGY, 111(2), 733–733.

By: T. Hsieh & T. Thomas

Event: AMER SOC PLANT PHYSIOLOGISTS 15501 MONONA DRIVE, ROCKVILLE, MD 20855

Source: ORCID
Added: September 13, 2019

1996 journal article

Identification of novel mRNAs in immature seeds of Arabidopsis thaliana.

SAAS Bulletin, Biochemistry and Biotechnology.

Source: ORCID
Added: September 13, 2019

1991 journal article

Identification of phospholipase activities in the exotoxin of Edwardsiella tarda

Reports On Fish Disease Research, 29, 39–46.

By: Y. Chung, T. Hsieh & C. Wang

Source: NC State University Libraries
Added: January 13, 2020

Employment

Updated: December 3rd, 2019 09:16

2018 - present

North Carolina State University Kannapolis, NC, US
Associate Professor Department of Plant and Microbial Biology

2012 - 2018

North Carolina State University Kannapolis, NC, US
Assistant Professor Plant and Microbial Biology

2007 - 2012

University of California Berkeley Berkeley, CA, US
Research Specialist Plant and Microbial Biology

2001 - 2007

University of California Berkeley Berkeley, CA, US
Postgraduate Researcher Plant and Microbial Biology

1998 - 2001

Texas A&M University College Station, Texas, US
Postdoctoral Research Associate Biology

Education

Updated: July 3rd, 2019 16:37

1991 - 1998

Texas A&M University College Station, Texas, US
PhD Biology

1983 - 1987

National Tsing-Hua University Hsinchu , TW
BS Chemistry