mass spectrometry, proteomics, glycomics, nanoscale/microscale LC, OMICS, systems biology
Taufika is originally from Dhaka, Bangladesh. She graduated with a BA from Transylvania University in Lexington, KY in 1998, double-majoring in Chemistry and Mathematics. She went on to receive her MS in Analytical Chemistry from Purdue University in West Lafayette, IN, under the guidance of Dr. R. Graham Cooks. Her thesis focused on the study of gas-phase fundamental ion chemistry using mass spectrometric techniques. Taufika then began her doctoral studies at the University of Kentucky, in the laboratory of Dr. Bert C. Lynn, completing her PhD in Analytical Chemistry in 2005 (summa cum laude). Her dissertation centered on methods development in biological mass spectrometry, with applications in small molecule research and proteomics. Completion of doctoral studies was followed by a North Carolina Biotechnology Center - Kenan Institute postdoctoral fellowship at NCSU under the guidance of Dr. David C. Muddiman in the Department of Chemistry. During this time, Taufika focused on advanced mass spectrometry techniques in the study of glycomics and ovarian cancer detection. Upon completion of the post-doc, she joined the NCSU Department of Chemistry as the Director of the NCSU Mass Spectrometry Facility (MSF). Today, she continues her career at NCSU with a joint appointment as a Senior Research Scholar at the Molecular Education, Technology, and Research Innovation Center (METRIC) and as a Research Associate Professor at the Department of Chemistry. She is also the Proteomics Section Leader for the Center for Human Health and the Environment (CHHE), as well as the METRIC Lead at the Plant Sciences Initiative (PSI) at NCSU. Taufika's focus is in the area of proteomics/glycomics/metabolomics and mass spectrometry. She enjoys collaborating with NCSU researchers in these cutting-edge areas of bioanalytical chemistry, teaching proteomics graduate courses, collaborator and graduate student training on mass spectrometry and proteomics techniques, as well as conducting her own research. Taufika is the Chair of the NCSU Council on the Status of Women (CSW).
2024 journal article
Myeloid cell MHC I expression drives CD8<SUP>+</SUP> T cell activation in nonalcoholic steatohepatitis
FRONTIERS IN IMMUNOLOGY, 14.
Contributors: , V. Adams n, L. Collins n , J. Holmes n, P. Hess n , H. Atkins n, G. Scheidemantle n, X. Liu n n
Ed(s): , L. Collins n & A. Kennedy n n
2024 journal article
The Biochemical Effects of Carotenoids in Orange Carrots on the Colonic Proteome in a Mouse Model of Diet-induced Obesity
BioRxiv.
Contributors: E. Balbuena n, F. Milhem n, B. Kiremitci n, n , L. Collins n, Q. Shu n, A. Eroglu n
2023 article
Discovery Proteomics and Absolute Protein Quantification Can Be Performed Simultaneously on an Orbitrap-Based Mass Spectrometer
Williams, T. I., Kowalchyk, C., Collins, L. B., & Reading, B. J. (2023, March 22). ACS OMEGA, Vol. 3.
Contributors: , C. Kowalchyk*, L. Collins n & B. Reading n n
2023 article
Identification and characterization of CHO host-cell proteins in monoclonal antibody bioprocessing
Oh, Y. H., Mendola, K. M., Choe, L. H., Min, L., Lavoie, A. R., Sripada, S. A., … Lenhoff, A. M. (2023, October 25). BIOTECHNOLOGY AND BIOENGINEERING, Vol. 10.
2023 journal article
Improving therapeutic protein secretion in the probiotic yeast Saccharomyces boulardii using a multifactorial engineering approach
MICROBIAL CELL FACTORIES, 22(1).
Contributors: D. Durmusoglu n, I. Al’Abri n, Z. Li n, T. Islam Williams n, L. Collins n , J. Martínez *, N. Crook n
2023 journal article
Pseudo-affinity capture of K. phaffii host cell proteins in flow-through mode: Purification of protein therapeutics and proteomic study
Separation and Purification Technology, 326, 124777.
Contributors: S. Sripada n, D. Elhanafi*, L. Collins n , n , M. Linova *, J. Woodley *, C. Boi n , S. Menegatti n
2022 article
A bottom-up proteomics workflow for a system containing multiple organisms
Bai, H., Collins, L. B. B., Andre, M. R., Breitschwerdt, E. B. B., & Williams, T. I. (2023, January 3). RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Vol. 1.
Contributors: H. Bai n, L. Collins n , M. André n, E. Breitschwerdt n & n
2022 journal article
Filtered Cerebrospinal Fluid From Patients With Amyotrophic Lateral Sclerosis Displays an Altered Proteome and Affects Motor Phenotype in a Mouse Model
Cureus, 12.
2022 article
Improving Therapeutic Protein Secretion in the Probiotic YeastSaccharomyces boulardiiusing a Multifactorial Engineering Approach
Durmusoglu, D., Al’Abri, I., Williams, T. I., Collins, L. B., Martínez, J. L., & Crook, N. (2022, December 31). BioRxiv.
Contributors: D. Durmusoglu n, I. Al'Abri n, n , L. Collins n , J. Martínez * & N. Crook n
2022 article
Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain
Muthusamy, N., Williams, T. I., O'Toole, R., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). GEROSCIENCE, Vol. 1.
Contributors: N. Muthusamy n, n , R. O’Toole *, J. Brudvig *, K. Adler n, J. Weimer *, D. Muddiman n , H. Ghashghaei n
2022 journal article
Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of para-aminobenzoate in Chlamydia trachomatis
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(39).
2022 article
Towards continuous mAb purification: Clearance of host cell proteins from CHO cell culture harvests via "flow-through affinity chromatography" using peptide-based adsorbents
Sripada, S. A., Chu, W., Williams, T. I., Teten, M. A., Mosley, B. J., Carbonell, R. G., … Menegatti, S. (2022, April 22). BIOTECHNOLOGY AND BIOENGINEERING, Vol. 119.
Contributors: S. Sripada n, W. Chu n, n , M. Teten n, B. Mosley n, R. Carbonell n, A. Lenhoff *, S. Cramer *
2022 journal article
Using Proteomic Approaches to Unravel the Response of Ctenocephalides felis felis to Blood Feeding and Infection With Bartonella henselae
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12.
Contributors: M. André n, P. Neupane n, M. Lappin *, B. Herrin*, V. Smith*, n , L. Collins n , H. Bai n
2021 article
Development of Peptide Ligands for Targeted Capture of Host Cell Proteins from Cell Culture Production Harvests
PROTEOMIC PROFILING, 2 EDITION, Vol. 2261, pp. 489–506.
Contributors: R. Lavoie n, n , R. Blackburn *, R. Carbonell n & S. Menegatti n
2021 article
Discovery proteomics of human placental tissue
Mellinger, A. L., McCoy, K., Minior, D. A. T., & Williams, T. I. (2021, December 23). RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Vol. 9.
Contributors: A. Mellinger n, K. McCoy *, D. Minior* & n
2020 journal article
Removal of host cell proteins from cell culture fluids by weak partitioning chromatography using peptide-based adsorbents
SEPARATION AND PURIFICATION TECHNOLOGY, 257.
Contributors: R. Lavoie n, W. Chu n, J. Lavoie n, Z. Hetzler n, n , R. Carbonell n, S. Menegatti n
2019 journal article
A substitute variety for agronomically and medicinally important Serenoa repens (saw palmetto)
SCIENTIFIC REPORTS, 9(1).
Contributors: Y. Jaiswal *, D. Weber *, A. Yerke *, Y. Xue*, D. Lehman n, n , T. Xiao*, D. Haddad *, L. Williams*
2019 conference paper
Egg Characteristics and Striped Bass Fertility
Presented at the Mass Spectrometry Research Symposium, North Carolina State University, Raleigh, NC.
Event: Mass Spectrometry Research Symposium at North Carolina State University, Raleigh, NC
2019 conference paper
Exploring Egg Characteristics of Striped Bass
Presented at the American Society for Mass Spectrometry Meeting, Atlanta, GA.
Event: American Society for Mass Spectrometry Meeting at Atlanta, GA on July 2-6, 2019
2019 journal article
Targeted capture of Chinese hamster ovary host cell proteins: Peptide ligand binding by proteomic analysis
BIOTECHNOLOGY AND BIOENGINEERING, 117(2), 438–452.
Contributors: R. Lavoie n, A. Fazio n, n , R. Carbonell n & S. Menegatti n
2018 journal article
Conrad Bessant (Ed.): Proteome informatics
Analytical and Bioanalytical Chemistry, 410(14), 3231–3233.
2014 journal article
Proportional Accumulation of Yolk Proteins Derived From Multiple Vitellogenins is Precisely Regulated During Vitellogenesis in Striped Bass (Morone saxatilis)
JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY, 321(6), 301–315.
Contributors: V. Williams n, B. Reading n , H. Amano*, N. Hiramatsu*, J. Schilling n, S. Salger n, T. Islam Williams n, K. Gross n, C. Sullivan n
2013 journal article
Dynamics of the Striped Bass (Morone saxatilis) Ovary Proteome Reveal a Complex Network of the Translasome
Journal of Proteome Research, 12(4), 1691–1699.
Contributors: B. Reading* , V. Williams*, R. Chapman*, * & C. Sullivan*
2013 conference paper
The North Carolina State University Mass Spectrometry Facility at the Cutting Edge of Scientific Research
Presented at the Workshop on Allergy and Inflammation, North Carolina State University, Raleigh, NC.
Event: Workshop on Allergy and Inflammation at North Carolina State University, Raleigh, NC
2012 journal article
Re-evaluating the role of ascorbic acid and phenolic glycosides in ozone scavenging in the leaf apoplast of Arabidopsis thaliana L.
Plant, Cell & Environment, 8.
2011 conference paper
Behavioral Response Profiles of Odorant Binding Proteins in Drosophila melanogaster
Presented at the 6th Annual North Carolina State University Graduate Student Research Symposium, Raleigh, NC.
Event: 6th Annual North Carolina State University Graduate Student Research Symposium at Raleigh, NC
2011 conference paper
Functional Dissection of Odorant Binding Protein Genes in Drosophila melanogaster
Presented at the Center for Integrative Genomics (CIG) Symposium, Université de Lausanne, Lausanne, Switzerland.
Event: Center for Integrative Genomics (CIG) Symposium at Université de Lausanne, Lausanne, Switzerland
2011 journal article
Functional dissection of Odorant binding protein genes in Drosophila melanogaster
GENES BRAIN AND BEHAVIOR, 10(6), 648–657.
Contributors: S. Swarup*, * & R. Anholt n
2011 conference paper
Proteomics of Olfaction: Identification and Relative Quantification of Odorant Binding Proteins in the Antennae of Drosophila melanogaster
Presented at the American Society for Mass Spectrometry, Denver, CO.
Event: American Society for Mass Spectrometry at Denver, CO
2009 conference paper
Accurate Mass Measurements in FTMS with Automatic Gain Control
Presented at the Pharmaceutical Interest Group, American Society for Mass Spectrometry, Philadelphia, PA.
Event: Pharmaceutical Interest Group, American Society for Mass Spectrometry at Philadelphia, PA
2009 journal article
Construction of Coordination-Driven Self-Assembled [5+5] Pentagons Using Metal-Carbonyl Dipyridine Ligands
INORGANIC CHEMISTRY, 48(13), 5590–5592.
Contributors: L. Zhao *, K. Ghosh *, Y. Zheng *, M. Lyndon n, n & P. Stang *
2009 conference paper
Proteomic Profiling of Populus trichocarpa for the Interrogation of Molecular Mechanisms behind Wood Formation
Presented at the American Society for Mass Spectrometry, Philadelphia, PA.
Event: American Society for Mass Spectrometry at Philadelphia, PA
2009 conference paper
The Development of Nano LC Mass Spectrometric Methods for Profiling Glycans in Epithelial Ovarian Cancer (EOC) and Control Plasma
Presented at the 60th Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy, Chicago, IL.
Event: 60th Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy at Chicago, IL
2009 journal article
The Soluble Proteome of the Drosophila Antenna
Chemical Senses, 35(1), 21–30.
Contributors: R. Anholt n & n
2008 conference paper
A Combinatorial Approach: The Use of MALDI-MS and Nano LC-MS for Glycan Biomarker Discovery
Presented at the Protein Biomarkers Meeting, Philadelphia, PA.
Event: Protein Biomarkers Meeting at Philadelphia, PA
2008 conference paper
Analysis of O-linked Glycans Derived from Normal and Diseased EOC Plasma by Nano LC-ESI-FTICR Mass Spectrometry
Presented at the American Society for Mass Spectrometry, Denver, CO.
Event: American Society for Mass Spectrometry at Denver, CO
2008 speech
Applications of Carbohydrate Profiling in Ovarian Cancer Plasma Glycoproteins
Presented at the Longwood University, Farmville, VA.
Event: Longwood University at Farmville, VA
2008 journal article
Calibration laws based on multiple linear regression applied to matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
JOURNAL OF MASS SPECTROMETRY, 43(12), 1659–1663.
Contributors: D. Williams Jr., M. Chadwick n, n & D. Muddiman n
2008 journal article
Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients
ANALYTICAL CHEMISTRY, 81(3), 1130–1136.
Contributors: M. Bereman n, n & D. Muddiman n
2008 conference paper
Epithelial Ovarian Cancer Detection by Glycan Profiling in Blood
Presented at the North Carolina State University, Raleigh, NC.
Event: North Carolina State University at Raleigh, NC
2008 conference paper
Glycan Analysis by Nano LC-MS: Applications for Biomarker Discovery in Epithelial Ovarian Cancer (EOC)
Presented at the Atlanta Athens Mass Spectrometry Discussion Group Symposium, University of Georgia, Athens, GA.
Event: Atlanta Athens Mass Spectrometry Discussion Group Symposium at University of Georgia, Athens, GA
2008 conference paper
Glycan Profiling in Plasma: Fundamentals and Applications to Ovarian Cancer
Presented at the Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy, New Orleans, LA.
Event: Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy at New Orleans, LA
2008 conference paper
In Search of Epithelial Ovarian Cancer Molecular Markers by MALDI-FT-ICR-MS and NANO-LC-LTQ-ORBITRAP-MS
Presented at the Mass Spectrometry Applications to the Clinical Laboratory, University of California - San Diego, San Diego, CA.
Event: Mass Spectrometry Applications to the Clinical Laboratory at University of California - San Diego, San Diego, CA
2008 conference paper
Innovative Technology Development Directed at the Elucidation of Biomarkers for the Detection of Early-Stage Ovarian Cancer
Presented at the Meeting for the Innovative Molecular Analysis Technologies (IMAT) Program of the National Cancer Institute, Cambridge, MA.
Event: Meeting for the Innovative Molecular Analysis Technologies (IMAT) Program of the National Cancer Institute at Cambridge, MA
2008 journal article
Investigations with O-linked protein glycosylations by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
JOURNAL OF MASS SPECTROMETRY, 43(9), 1215–1223.
Contributors: , D. Saggese n, K. Toups n, J. Frahm n, H. An *, B. Li*, C. Lebrilla *, D. Muddiman n n
2008 conference paper
Mining the Plasma Glycome for Epithelial Ovarian Cancer Biomarker Discovery
Presented at the American Society for Mass Spectrometry, Denver, CO.
Event: American Society for Mass Spectrometry at Denver, CO
2008 journal article
Studying O-linked protein glycosylations in human plasma
JOURNAL OF PROTEOME RESEARCH, 7(6), 2562–2568.
Contributors: , D. Saggese n & D. Muddiman n n
2008 conference paper
The Development of a Nano-LC Mass Spectrometric Method for Profiling Glycans in Epithelial Ovarian Cancer (EOC) and Control Plasma
Presented at the Triangle Chromatography Symposium and Instrument Exhibit, Raleigh, NC.
Event: Triangle Chromatography Symposium and Instrument Exhibit at Raleigh, NC
2007 conference paper
Calibration Laws Based on Multiple Linear Regression Applied to MALDI-FT-ICR-MS
Presented at the American Society for Mass Spectrometry, Indianapolis, IN.
Event: American Society for Mass Spectrometry at Indianapolis, IN
2007 journal article
Carbohydrate analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
ANALYTICAL CHEMISTRY, 79(22), 8812–8815.
Contributors: M. Bereman n, n & D. Muddiman n
2007 conference paper
Characterization and Biological Applications of Desorption Electrospray Ionization Coupled to Hybrid FT-ICR Mass Spectrometry
Presented at the Southeastern Regional Meeting of the American Chemical Society, Greenville, SC.
Event: Southeastern Regional Meeting of the American Chemical Society at Greenville, SC
2007 journal article
Effect of matrix crystal structure on ion abundance of carbohydrates by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 21(5), 807–811.
Contributors: , D. Saggese n, R. Wilcox n, J. Martin n & D. Muddiman n n
2007 review
Epithelial ovarian cancer: Disease etiology, treatment, detection, and investigational gene, metabolite, and protein biomarkers
[Review of ]. JOURNAL OF PROTEOME RESEARCH, 6(8), 2936–2962.
Contributors: , K. Toups n, D. Saggese n, K. Kalli n, W. Cliby n & D. Muddiman n n
2007 conference paper
Investigations with O-linked Protein Glycosylations by MALDI-FT-ICR-MS
Presented at the American Society for Mass Spectrometry, Indianapolis, IN.
Event: American Society for Mass Spectrometry at Indianapolis, IN
2007 conference paper
MALDI-FT-ICR-MS Quantification of Peptides and Oligosaccharides using Stable-Isotope Labels
Presented at the American Society for Mass Spectrometry, Indianapolis, IN.
Event: American Society for Mass Spectrometry at Indianapolis, IN
2007 conference paper
O-linked Protein Glycosylations in Plasma as Biomarkers for Epithelial Ovarian Cancer
Presented at the American Society for Mass Spectrometry, Indianapolis, IN.
Event: American Society for Mass Spectrometry at Indianapolis, IN
2007 conference paper
Plasma Biomarker Discovery and Analysis using FT-ICR Mass Spectrometry
Presented at the Federation of Analytical Chemistry and Spectroscopy Societies, Memphis, TN.
Event: Federation of Analytical Chemistry and Spectroscopy Societies at Memphis, TN
2007 conference paper
The Development and Characterization of a Desorption Electrospray Ionization Source Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (DESI-FT-ICR-MS) for Biological Analyses
Presented at the American Society for Mass Spectrometry, Indianapolis, IN.
Event: American Society for Mass Spectrometry at Indianapolis, IN
2006 journal article
A novel Bicine running buffer system for doubled sodium dodecyl sulfate – polyacrylamide gel electrophoresis of membrane proteins
Electrophoresis, 27(14), 2984–2995.
Contributors: , J. Combs*, A. Thakur*, H. Strobel* & B. Lynn * *
2006 journal article
Proteomic profile changes in membranes of ethanol-tolerant Clostridium thermocellum
Applied Microbiology and Biotechnology, 74(2), 422–432.
Contributors: , J. Combs*, B. Lynn * & H. Strobel* n
2005 journal article
Analysis of derivatized biogenic aldehydes by LC tandem mass spectrometry.
Analytical Chemistry, 5(10), 3383–3389.
Contributors: , M. Lovell * & B. Lynn * *
2005 journal article
Increased levels of 4-hydroxynonenal and acrolein, neurotoxic markers of lipid peroxidation, in the brain in Mild Cognitive Impairment and early Alzheimer's disease
Neurobiology of Aging, 27(8), 1094–1099.
Contributors: , B. Lynn *, W. Markesbery* & M. Lovell * *
2005 thesis
METHODS DEVELOPMENT IN BIOLOGICAL MASS SPECTROMETRY: APPLICATIONS IN SMALL MOLECULE RESEARCH AND PROTEOMICS
https://uknowledge.uky.edu/cgi/viewcontent.cgi?referer=&httpsredir=1&article=1291&context=gradschool_diss
2005 speech
Methods Development in Biological Mass Spectrometry: Applications in Small Molecule Research and Proteomics
Presented at the North Carolina State University, Raleigh, NC.
Event: North Carolina State University at Raleigh, NC
2005 conference paper
Proteomic Profile Changes in Membranes of Ethanol-Tolerant Clostridium thermocellum
Presented at the American Society for Microbiology, Atlanta, GA.
Event: American Society for Microbiology at Atlanta, GA
2005 conference paper
The Membrane Proteome of Clostridium Thermocellum by MALDI-TOF-MS
Presented at the American Society for Mass Spectrometry, San Antonio, TX.
Event: American Society for Mass Spectrometry at San Antonio, TX
2004 conference paper
Analysis of Derivatized Biogenic Aldehydes by HPLC Tandem Mass Spectrometry
Presented at the American Society for Mass Spectrometry, Nashville, TN.
Event: American Society for Mass Spectrometry at Nashville, TN
2003 conference paper
Analysis of Aldehydes and Aldehyde-DNA Adducts by HPLC Tandem Mass Spectrometry
Presented at the Naff Symposium on Chemistry and Molecular Biology, University of Kentucky, Lexington, KY.
Event: Naff Symposium on Chemistry and Molecular Biology at University of Kentucky, Lexington, KY
2001 journal article
Proton affinity of deuterated acetonitrile estimated by the kinetic method with full entropy analysis
International Journal of Mass Spectrometry, 210(211), 133–146.
Contributors: , J. Denault* & R. Cooks * *
1998 conference paper
Electrochemical Analysis of DNA Bioconjugates
Presented at the American Chemical Society, Dallas, TX.
Event: American Chemical Society at Dallas, TX
1997 speech
Electrochemical Analysis of DNA Bioconjugates
Presented at the University of Tennessee, Knoxville, TN.
Event: University of Tennessee at Knoxville, TN
1997 conference paper
Promoting Science for Fun at a Local Inner City School
Presented at the American Chemical Society, San Francisco, CA.
Event: American Chemical Society at San Francisco, CA
Updated: August 2nd, 2022 19:30
2017 - present
2008 - 2017
Updated: July 28th, 2020 11:19
2006 - 2008
2002 - 2005
1994 - 1998
Funding history based on the linked ORCID record. Updated: August 22nd, 2023 13:35
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