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Yan, H., Pei, X., Zhang, H., Li, X., Zhang, X., Zhao, M., … Zhao, X. (2021). [Review of MYB-Mediated Regulation of Anthocyanin Biosynthesis]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6). https://doi.org/10.3390/ijms22063103

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Niu, B., Wang, W., Yuan, Z., Sederoff, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). [Review of Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease]. FRONTIERS IN MICROBIOLOGY, 11. https://doi.org/10.3389/fmicb.2020.585404

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Straub, C. T., Bing, R. G., Wang, J. P., Chiang, V. L., Adams, M. W. W., & Kelly, R. M. (2020). Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar. BIOTECHNOLOGY FOR BIOFUELS, 13(1). https://doi.org/10.1186/s13068-020-01675-2

Yeh, C.-S., Wang, Z., Miao, F., Ma, H., Kao, C.-T., Hsu, T.-S., … Lin, Y.-C. J. (2019). A novel synthetic-genetic-array-based yeast one-hybrid system for high discovery rate and short processing time. GENOME RESEARCH, 29(8), 1343–1351. https://doi.org/10.1101/gr.245951.118

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Miller, Z. D., Peralta, P. N., Mitchell, P., Chiang, V. L., Kelley, S. S., Edmunds, C. W., & Peszlen, I. M. (2019). Anatomy and Chemistry of Populus trichocarpa with Genetically Modified Lignin Content. BIORESOURCES, 14(3), 5729–5746. https://doi.org/10.15376/biores.14.3.5729-5746

Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2019). CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. NEW PHYTOLOGIST, 222(1), 244–260. https://doi.org/10.1111/nph.15505

Strauss, S. H., Boerjan, W., Chiang, V., Costanza, A., Coleman, H., Davis, J. M., … Valenzuela, S. (2019). Certification for gene-edited forests. https://doi.org/10.1126/science.aay6165

Wang, J. P., Liu, B., Sun, Y., Chiang, V. L., & Sederoff, R. R. (2019). Enzyme-Enzyme Interactions in Monolignol Biosynthesis. Frontiers in Plant Science, 9. https://doi.org/10.3389/fpls.2018.01942

Wang, J. P., Matthews, M. L., Naik, P. P., Williams, C. M., Ducoste, J. J., Sederoff, R. R., & Chiang, V. L. (2019). Flux modeling for monolignol biosynthesis. Current Opinion in Biotechnology, 56, 187–192. https://doi.org/10.1016/J.COPBIO.2018.12.003

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Edmunds, C. W., Peszlen, I., Chiang, V. L., Kelley, S. S., Miller, Z. D., Davis, M. F., … Peralta, P. (2019). Thermo-mechanical Behavior of Genetically Modified Populus trichocarpa. BIORESOURCES, 14(2), 4760–4773. https://doi.org/10.15376/biores.14.2.4760-4773

Miller, Z. D., Peralta, P. N., Mitchell, P., Chiang, V. L., Edmunds, C. W., & PESZLEN, I. L. O. N. A. (2018). Altered Lignin Content and Composition in Transgenic Populus trichocarpa Results in a Decrease of Modulus of Elasticity. BIORESOURCES, 13(4), 7698–7708. https://doi.org/10.15376/biores.13.4.7698-7708

Naik, P., Wang, J. P., Sederoff, R., Chiang, V., Williams, C., & Ducoste, J. J. (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLOS ONE, 13(3), e0193896. https://doi.org/10.1371/journal.pone.0193896

Wang, J. P., Matthews, M. L., Williams, C. M., Shi, R., Yang, C., Tunlaya-Anukit, S., … Chiang, V. L. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications, 9(1), 1579. https://doi.org/10.1038/s41467-018-03863-z

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Xiang, Z. Y., Sen, S. K., Min, D. Y., Savithri, D., Lu, F. C., Jameel, H., … Chang, H. M. (2017). Field-grown transgenic hybrid poplar with modified lignin biosynthesis to improve enzymatic saccharification efficiency. ACS Sustainable Chemistry & Engineering, 5(3), 2407–2414. https://doi.org/10.1021/acssuschemeng.6b02740

Lin, Y. J., Chen, H., Li, Q., Li, W., Wang, J. P., Shi, R., … Chiang, V. L. (2017). Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa. Proceedings of the National Academy of Sciences of the United States of America, 11(45), E9722–E9729. https://doi.org/10.1073/pnas.1714422114

Chang, H.-min, Sederoff, R., Chiang, V., & Umezawa, T. (2017). Takayoshi Higuchi (1927–2017). Journal of Wood Chemistry and Technology, 37(5), 405–406. https://doi.org/10.1080/02773813.2017.1350792

Shi, R., Wang, J. P., Lin, Y.-C., Li, Q., Sun, Y.-H., Chen, H., … Chiang, V. L. (2017). Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. Planta, 245(5), 927–938. https://doi.org/10.1007/s00425-016-2640-1

Lin, C.-Y., Li, Q., Tunlaya-Anukit, S., Shi, R., Sun, Y.-H., Wang, J. P., … Chiang, V. L. (2016). A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa. Tree Genetics & Genomes, 12(2). https://doi.org/10.1007/s11295-016-0978-y

Kumari, S., Deng, W. P., Gunasekara, C., Chiang, V., Chen, H. S., Ma, H., … Wei, H. R. (2016). Bottom-up GGM algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways or processes. BMC Bioinformatics, 17. https://doi.org/10.1186/s12859-016-0981-1

Lin, C. Y., Wang, J. P., Li, Q. Z., Chen, H. C., Liu, J., Loziuk, P., … Chiang, V. L. (2015). 4-Coumaroyl and caffeoyl shikimic acids inhibit 4-coumaric acid:coenzyme a ligases and modulate metabolic flux for 3-hydroxylation in monolignol biosynthesis of populus trichocarpa. Molecular Plant, 8(1), 176–187. https://doi.org/10.1016/j.molp.2014.12.003

Loziuk, P. L., Parker, J., Li, W., Lin, C. Y., Wang, J. P., Li, Q. Z., … Muddiman, D. (2015). Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa. Journal of Proteome Research, 14(10), 4158–4168. https://doi.org/10.1021/acs.jproteome.5b00233

Wang, J. P., Chuang, L., Loziuk, P. L., Chen, H., Lin, Y.-C., Shi, R., … Chiang, V. L. (2015). Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis. Proceedings of the National Academy of Sciences, 112(27), 8481–8486. https://doi.org/10.1073/pnas.1510473112

Li, Q. Z., Yeh, T. F., Yang, C. M., Song, J. Y., Chen, Z. Z., Sederoff, R. R., & Chiang, V. L. (2015). Populus trichocarpa. Agrobacterium Protocols, Volume 2, Third Edition, 1224, 357–363. https://doi.org/10.1007/978-1-4939-1658-0_28

Xiang, Z. Y., Sen, S. K., Roy, A., Min, D. Y., Savithri, D., Jameel, H., … Chang, H. M. (2015). Wood characteristics and enzymatic saccharification efficiency of field-grown transgenic black cottonwood with altered lignin content and structure. Cellulose, 22(1), 683–693. https://doi.org/10.1007/s10570-014-0541-7

Nakatsubo, T., Ragamustari, S. K., Hattori, T., Ono, E., Yamamura, M., Li, L. G., … Umezawa, T. (2014). A new O-methyltransferase for monolignol synthesis in Carthamus tinctorius. Plant Biotechnology, 31(5), 545–553. https://doi.org/10.5511/plantbiotechnology.14.0903a

Li, W., Lin, Y. C., Li, Q., Shi, R., Lin, C. Y., Chen, H., … Chiang, V. L. (2014). A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue. Nature Protocols, 9(9), 2180–2193. https://doi.org/10.1038/nprot.2014.146

Lin, Y.-C., Li, W., Chen, H., Li, Q., Sun, Y.-H., Shi, R., … Chiang, V. L. (2014). A simple improved-throughput xylem protoplast system for studying wood formation. Nature Protocols, 9(9), 2194–2205. https://doi.org/10.1038/nprot.2014.147

Loziuk, P. L., Sederoff, R. R., Chiang, V. L., & Muddiman, D. (2014). Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry. Analyst [London], 139(21), 5439–5450. https://doi.org/10.1039/c4an00567h

Min, D., Xiang, Z., Liu, J., Jameel, H., Chiang, V., Jin, Y., & Chang, H.-min. (2014). Improved Protocol for Alkaline Nitrobenzene Oxidation of Woody and Non-Woody Biomass. Journal of Wood Chemistry and Technology, 35(1), 52–61. https://doi.org/10.1080/02773813.2014.902965

Sutela, S., Hahl, T., Tiimonen, H., Aronen, T., Ylioja, T., Laakso, T., … Haggman, H. (2014). Phenolic compounds and expression of 4CL genes in silver birch clones and Pt4CL1a lines. PLoS One, 9(12). https://doi.org/10.1371/journal.pone.0114434

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Chen, H.-C., Song, J., Wang, J. P., Lin, Y.-C., Ducoste, J., Shuford, C. M., … Chiang, V. L. (2014). Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling. The Plant Cell, 26(3), 876–893. https://doi.org/10.1105/tpc.113.119685

Min, D. Y., Li, Q. Z., Chiang, V., Jameel, H., Chang, H. M., & Lucia, L. (2014). The influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification I: Transgenic black cottonwood (western balsam poplar, California poplar) P-trichocarpa including the xylan down-regulated and the lignin down-regulated lines. Fuel, 119, 207–213. https://doi.org/10.1016/j.fuel.2013.11.047

Min, D. Y., Yang, C. M., Chiang, V., Jameel, H., & Chang, H. M. (2014). The influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification II: Transgenic hybrid poplars (Populus nigra L. and Populus maximowiczii A.). Fuel, 116, 56–62. https://doi.org/10.1016/j.fuel.2013.07.046

Kafle, K., Shi, R., Lee, C. M., Mittal, A., Park, Y. B., Sun, Y. H., … Kim, S. H. (2014). Vibrational sum-frequency-generation (SFG) spectroscopy study of the structural assembly of cellulose microfibrils in reaction woods. Cellulose, 21(4), 2219–2231. https://doi.org/10.1007/s10570-014-0322-3

Umezawa, T., Ragamustari, S. K., Nakatsubo, T., Wada, S., Li, L. G., Yamamura, M., … Chiang, V. L. (2013). A lignan O-methyltransferase catalyzing the regioselective methylation of matairesinol in Carthamus tinctorius. Plant Biotechnology, 30(2), 97–109. https://doi.org/10.5511/plantbiotechnology.12.1230a

Liu, E. Y., Peng, S. B., Li, Q. Z., Sun, Y. H., Chiang, V. L., & Sederoff, R. R. (2013). High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer. Plant Biotechnology, 30(2), 191–198. https://doi.org/10.5511/plantbiotechnology.13.0213a

Chen, H. C., Song, J. N., Williams, C. M., Shuford, C. M., Liu, J., Wang, J. P., … Chiang, V. L. (2013). Monolignol pathway 4-coumaric acid: Coenzyme A ligases in populus trichocarpa: Novel specificity, metabolic regulation, and simulation of coenzyme a ligation fluxes. Plant Physiology, 161(3), 1501–1516. https://doi.org/10.1104/pp.112.210971

Lu, S., Li, Q., Wei, H., Chang, M.-J., Tunlaya-Anukit, S., Kim, H., … Chiang, V. L. (2013). Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa. Proceedings of the National Academy of Sciences, 110(26), 10848–10853. https://doi.org/10.1073/pnas.1308936110

Shi, R., Shuford, C. M., Wang, J. P., Sun, Y. H., Yang, Z. C., Chen, H. C., … Chiang, V. L. (2013). Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta, 238(3), 487–497. https://doi.org/10.1007/s00425-013-1905-1

Lin, Y. C., Li, W., Sun, Y. H., Kumari, S., Wei, H. R., Li, Q. Z., … Chiang, V. L. (2013). SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. Plant Cell, 25(11), 4324–4341. https://doi.org/10.1105/tpc.113.117697

Albert, V. A., Barbazuk, W. B., dePamphilis, C. W., Der, J. P., Leebens-Mack, J., Ma, H., … Ammiraju, J. S. S. (2013). The Amborella Genome and the Evolution of Flowering Plants. Science, 342(6165), 1456–1457. https://doi.org/10.1126/science.1241089

Min, D. Y., Yang, C. M., Shi, R., Jameel, H., Chiang, V., & Chang, H. M. (2013). The elucidation of the lignin structure effect on the cellulase-mediated saccharification by genetic engineering poplars (Populus nigra L. x Populus maximowiczii A.). Biomass and Bioenergy, 58, 52–57. https://doi.org/10.1016/j.biombioe.2013.08.019

Loziuk, P. L., Wang, J. P., Li, Q. Z., Sederoff, R. R., Chiang, V. L., & Muddiman, D. (2013). Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments. Journal of Proteome Research, 12(12), 5820–5829. https://doi.org/10.1021/pr4008442

Liu, J., Shi, R., Li, Q. Z., Sederoff, R. R., & Chiang, V. L. (2012). A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities. Planta, 236(3), 879–885. https://doi.org/10.1007/s00425-012-1688-9

Shuford, C. M., Li, Q., Sun, Y.-H., Chen, H.-C., Wang, J., Shi, R., … Muddiman, D. C. (2012). Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry. Journal of Proteome Research, 11(6), 3390–3404. https://doi.org/10.1021/pr300205a

Wang, J. P., Shuford, C. M., Li, Q. Z., Song, J. N., Lin, Y. C., Sun, Y. H., … Chiang, V. L. (2012). Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC–MS/MS based protein quantification and metabolic flux analysis. Planta, 236(3), 795–808. https://doi.org/10.1007/s00425-012-1663-5

Sun, Y. H., Shi, R., Zhang, X. H., Chiang, V. L., & Sederoff, R. R. (2012). MicroRNAs in trees. Plant Molecular Biology, 80(1), 37–53. https://doi.org/10.1007/s11103-011-9864-z

Shuford, C. M., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2012). Peptide Production and Decay Rates Affect the Quantitative Accuracy of Protein Cleavage Isotope Dilution Mass Spectrometry (PC-IDMS). Molecular & Cellular Proteomics, 11(9), 814–823. https://doi.org/10.1074/mcp.O112.017145

Perera, P. N., Schmidt, M., Chiang, V. L., Schuck, P. J., & Adams, P. D. (2012). Raman-spectroscopy-based noninvasive microanalysis of native lignin structure. Analytical and Bioanalytical Chemistry, 402(2), 983–987. https://doi.org/10.1007/s00216-011-5518-x

Li, Q. Z., Lin, Y. C., Sun, Y. H., Song, J., Chen, H., Zhang, X. H., … Chiang, V. L. (2012). Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. Proceedings of the National Academy of Sciences of the United States of America, 109(36), 14699–14704. https://doi.org/10.1073/pnas.1212977109

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Min, D. Y., Li, Q. Z., Yang, C. M., Chang, H. M., Chiang, V., & Jameel, H. (2012). The effects of transgenic samples on the enzymatic saccharification. Proceeding of the 4th International Conference on Pulping, Papermaking and Biotechnology (ICPPB '12), vols. I and II, 1058–1062.

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Zhou, C. Z., Li, Q. Z., Chiang, V. L., Lucia, L., & Griffis, D. P. (2011). Chemical and spatial differentiation of syringyl and guaiacyl lignins in poplar wood via time-of-flight secondary ion mass spectrometry. Analytical Chemistry, 83(18), 7020–7026. https://doi.org/10.1021/ac200903y

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Lu, S. F., Yang, C. M., & Chiang, V. L. (2011). Conservation and diversity of MicroRNA-associated copper-regulatory networks in Populus trichocarpa. Journal of Integrative Plant Biology, 53(11), 879–891. https://doi.org/10.1111/j.1744-7909.2011.01080.x

Li, Q. Z., Min, D. Y., Wang, J. P. Y., PESZLEN, I. L. O. N. A., Horvath, L., Horvath, B., … Chiang, V. L. (2011). Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood. Tree Physiology, 31(2), 226–236. https://doi.org/10.1093/treephys/tpr008

Roque-Rivera, R., Talhelm, A. F., Johnson, D. W., Chiang, V. L., & Pregitzer, K. S. (2011). Effects of lignin-modified Populus tremuloides on soil organic carbon. Journal of Plant Nutrition and Soil Science, 174(5), 818–826. https://doi.org/10.1002/jpln.201000445

Chen, H. C., Li, Q. Z., Shuford, C. M., Liu, J., Muddiman, D., Sederoff, R. R., & Chiang, V. L. (2011). Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 108(52), 21253–21258. https://doi.org/10.1073/pnas.1116416109

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