Ron Ross Sederoff

Chromosome-level genome assembly of a triploid poplar Populus alba 'Berolinensis'

Chen, S., Yu, Y., Wang, X., Wang, S., Zhang, T., Zhou, Y., … Chen, S. (2023, February 27). MOLECULAR ECOLOGY RESOURCES.

Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties

CARBOHYDRATE POLYMERS, 314.

Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change

FRONTIERS IN PLANT SCIENCE, 13.

Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus

FRONTIERS IN PLANT SCIENCE, 13.

Morphological and Comparative Transcriptome Analysis of Three Species of Five-Needle Pines: Insights Into Phenotypic Evolution and Phylogeny

FRONTIERS IN PLANT SCIENCE, 13.

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

GIGASCIENCE, 11.

The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion

Wang, H., Lu, Y., Zhang, T., Liu, Z., Cao, L., Chang, Q., … Zheng, Z. (2022, December 10). PLANT PHYSIOLOGY, Vol. 12.

The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., … Li, Q. (2022, May 9). NATURE PLANTS.

Ubiquitinated DA1 negatively regulates vascular cambium activity through modulating the stability of WOX4 in Populus

Tang, X., Wang, C., Chai, G., Wang, D., Xu, H., Liu, Y., … Zhou, G. (2022, June 15). PLANT CELL.

A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182.

An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use

[Review of ]. HORTICULTURAE, 7(8).

BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAl5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar

FRONTIERS IN PLANT SCIENCE, 12.

BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021)

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021, September 9). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021). FRONTIERS IN PLANT SCIENCE, Vol. 12.

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

Epigenetic modification associated with climate regulates betulin biosynthesis in birch

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). JOURNAL OF FORESTRY RESEARCH, Vol. 12.

MYB-Mediated Regulation of Anthocyanin Biosynthesis

[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6).

Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana)

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19).

Qu-2, a robust poplar suspension cell line for molecular biology

JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740.

Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus

Li, H., Dai, X., Huang, X., Xu, M., Wang, Q., Yan, X., … Li, Q. (2021, October 4). JOURNAL OF INTEGRATIVE PLANT BIOLOGY.

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease

[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa

NEW PHYTOLOGIST, 222(1), 244–260.

Editorial: Forest Genomics and Biotechnology

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). FRONTIERS IN PLANT SCIENCE, Vol. 10.

Enzyme-Enzyme Interactions in Monolignol Biosynthesis

[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis

PLOS ONE, 13(3), e0193896.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Nature Communications, 9(1), 1579.

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729.

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa

PLANTA, 245(5), 927–938.

A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa

Tree Genetics & Genomes, 12(2).

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

MOLECULAR PLANT, 8(1), 176–187.

Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa

JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis

Proceedings of the National Academy of Sciences, 112(27), 8481–8486.

Populus trichocarpa

AGROBACTERIUM PROTOCOLS, VOLUME 2, THIRD EDITION, Vol. 1224, pp. 357–363.

A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue

NATURE PROTOCOLS, 9(9), 2180–2193.

A simple improved-throughput xylem protoplast system for studying wood formation

NATURE PROTOCOLS, 9(9), 2194–2205.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

GENOME BIOLOGY, 15(3).

Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry

ANALYST, 139(21), 5439–5450.

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

The Plant Cell, 26(3), 876–893.

GENOMICS A spruce sequence

Sederoff, R. (2013, May 30). NATURE, Vol. 497, pp. 569–570.

High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer

PLANT BIOTECHNOLOGY, 30(2), 191–198.

Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

PLANT PHYSIOLOGY, 161(3), 1501–1516.

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

Proceedings of the National Academy of Sciences, 110(26), 10848–10853.

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

Planta, 238(3), 487–497.

SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa

PLANT CELL, 25(11), 4324–4341.

The Amborella Genome and the Evolution of Flowering Plants

Science, 342(6165), 1456–1457.

Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments

JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

PLANTA, 236(3), 879–885.

A transcriptome-based genetic map of Chinese chestnut (Castanea mollissima) and identification of regions of segmental homology with peach (Prunus persica)

Tree Genetics & Genomes, 9(2), 557–571.

Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry

Journal of Proteome Research, 11(6), 3390–3404.

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis

PLANTA, 236(3), 795–808.

MicroRNAs in trees

PLANT MOLECULAR BIOLOGY, 80(1), 37–53.

Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704.

Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258.

Arabidopsis thaliana as a model for gelatinous fiber formation

RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, 57(3), 363–367.

Genomics of forest and ecosystem health in the Fagaceae: meeting report

TREE GENETICS & GENOMES, 6(5), 815–820.

Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees

PLANT PHYSIOLOGY, 154(2), 555–561.

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa

PLANTA, 232(6), 1281–1288.

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

BMC PLANT BIOLOGY, 9.

Genomics of growth traits in forest trees

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(2), 148–156.

Role of genomics in the potential restoration of the American chestnut

TREE GENETICS & GENOMES, 5(1), 181–187.

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

TREE PHYSIOLOGY, 28(6), 885–897.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

BMC GENOMICS, 9.

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

BMC Plant Biology, 8.

Regulatory science in forest biotechnology

Sederoff, R. (2007, April). TREE GENETICS & GENOMES, Vol. 3, pp. 71–74.

Synthesis of hydroxyphenylpropanoid beta-D-glucosides

JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 27(1), 1–8.

Trranscript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion

TREE PHYSIOLOGY, 27(10), 1441–1458.

Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays

BMC Genomics, 6(61).

Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid

GENETICS, 169(4), 2295–2303.

Variation of a-cellulose content and related metabolites during wood formation in loblolly pine

13th ISWFPC Proceedings, 13.

Verification of QTL linked markers for propagation traits in Eucalyptus

TREE GENETICS & GENOMES, 1(3), 103–108.

An auxin-inducible gene from loblolly pine ( Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein

Planta, 218(6), 916–927.

Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus

PLANT PHYSIOLOGY, 135(4), 2368–2378.

Gene Expression during Formation of Earlywood and Latewood in Loblolly Pine: Expression Profiles of 350 Genes

Plant Biology, 6(6), 654–663.

Genetics of Postzygotic Isolation in Eucalyptus: Whole-Genome Analysis of Barriers to Introgression in a Wide Interspecific Cross of Eucalyptus grandis and E. globulus

Genetics, 166(3), 1405–1418.

Metabolic profiling: A new tool in the study of wood formation

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 52(6), 1427–1434.

Microarray analyses of gene expression during adventitious root development in Pinus contorta (1[w])

PLANT PHYSIOLOGY, 135(3), 1526–1539.

The effect of reduced glutathione on morphology and gene expression of white spruce (Picea glauca) somatic embryos

JOURNAL OF EXPERIMENTAL BOTANY, 55(397), 695–709.

Variation an transcript abundance during somatic embryogenesis in gymnosperms

TREE PHYSIOLOGY, 24(10), 1073–1085.

An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine

Plant Molecular Biology, 52(1), 91–102.

Analysis of lignin produced by cinnamyl alcohol dehydrogenase-deficient Pinus taeda cultured cells

PLANT PHYSIOLOGY AND BIOCHEMISTRY, 41(5), 439–445.

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

Proceedings of the National Academy of Sciences, 100(12), 7383–7388.

Characterisation of PtMYB1, an R2R3-MYB from pine xylem

Plant Molecular Biology, 53(4), 597–608.

Characterisation of a pine MYB that regulates lignification

The Plant Journal, 36(6), 743–754.

Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F1 hybrid based on a double pseudo-backcross mapping approach

Theoretical and Applied Genetics, 107(6), 1028–1042.

Genome studies and molecular genetics - The rice genome and comparative genomics of higher plants - Editorial overview

Sasaki, T., & Sederoff, R. R. (2003, April). CURRENT OPINION IN PLANT BIOLOGY, Vol. 6, pp. 97–100.

NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins

ORGANIC & BIOMOLECULAR CHEMISTRY, 1(2), 268–281.

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine

Plant Physiology, 133(4), 1702–1716.

The effects of polyethylene glycol on gene expression of developing white spruce somatic embryos

PLANT PHYSIOLOGY, 131(1), 49–60.

Transcript profiles of stress-related genes in developing white spruce (Picea glauca) somatic embryos cultured with polyethylene glycol

PLANT SCIENCE, 165(4), 719–729.

Up, down and up again is a signature global gene expression pattern at the beginning of gymnosperm embryogenesis

GENE EXPRESSION PATTERNS, 3(1), 83–91.

Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species

THEORETICAL AND APPLIED GENETICS, 105(2-3), 474–478.

Heterologous array analysis in Pinaceae: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P-taeda, P-sylvestris or Picea abies

COMPARATIVE AND FUNCTIONAL GENOMICS, 3(4), 306–318.

Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system

COMPARATIVE AND FUNCTIONAL GENOMICS, 3(3), 226–243.

Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR

Ralph, J., Lapierre, C., Marita, J. M., Kim, H., Lu, F. C., Hatfield, R. D., … Boerjan, W. (2001, July). PHYTOCHEMISTRY, Vol. 57, pp. 993–1003.

Functional genomics and cell wall biosynthesis in loblolly pine

Plant Molecular Biology, 47(1/2), 275–291.

Genotypic control of high-frequency adventitious shoot regeneration via somatic organogenesis in loblolly pine

Plant Science, 161(2), 267–272.

Grafting for transgene containment

Lev-Yadun, S., & Sederoff, R. (2001, December).

High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer

BIOTECHNIQUES, 30(2), 348-+.

Molecular Cloning and Expression of Eight Laccase cDNAs in Loblolly Pine (Pinus taeda)*

Journal of Plant Research, 114(2), 147–155.

Moribund funding in agricultural research

Pulping and bleaching of CAD-deficient wood

JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 21(1), 1–17.

Regeneration of transgenic loblolly pine (Pinus taeda L.) from zygotic embryos transformed with Agrobacterium tumefaciens

PLANTA, 213(6), 981–989.

Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees

Tree Physiology, 20(7), 457–466.

Lignin structure in a mutant pine deficient in cinnamyl alcohol dehydrogenase

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 48(6), 2326–2331.

Methods for within family selection in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

Pines as model gymnosperms to study evolution, wood formation, and perennial growth

[Review of ]. JOURNAL OF PLANT GROWTH REGULATION, 19(3), 290–305.

Tree genomes: What will we understand about them by the year 2020 and how might we use that knowledge?

Forest Genetics and Sustainability, 23.

Building better trees with antisense

Sederoff, R. (1999, August). NATURE BIOTECHNOLOGY, Vol. 17, pp. 750–751.

Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E-globulus

THEORETICAL AND APPLIED GENETICS, 99(6), 936–946.

High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda)

Plant Molecular Biology, 39(3), 407–416.

Methods for within family selection of disease resistance in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

Modified lignin and delignification with a CAD-deficient loblolly pine

HOLZFORSCHUNG, 53(4), 403–410.

Surfing on AG Biotech into genomics

Molecular Breeding, 5(1999), 485–491.

Unexpected variation in lignin

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 2(2), 145–152.

AFLP genetic maps of Eucalyptus globulus and E-tereticornis

THEORETICAL AND APPLIED GENETICS, 96(6-7), 727–737.

Analysis of xylem formation in pine by cDNA sequencing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(16), 9693–9698.

Method of altering lignin in trees

Washington, DC: U.S. Patent and Trademark Office.

NMR applications in cell wall research

Recent advances in understanding lignin biosynthesis

[Review of ]. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY, 49(1998), 585–609.

The promise of forest biotechnology

Paper Age, (1998 Aug.), 13–18.

Abnormal lignin in a loblolly pine mutant

SCIENCE, 277(5323), 235–239.

Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase

MacKay, J. J., OMalley, D. M., Presnell, T., Booker, F. L., Campbell, M. M., Whetten, R. W., & Sederoff, R. R. (1997, July 22). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 94, pp. 8255–8260.