Works (132)

Updated: April 3rd, 2024 19:09

2023 article

Chromosome-level genome assembly of a triploid poplar Populus alba 'Berolinensis'

Chen, S., Yu, Y., Wang, X., Wang, S., Zhang, T., Zhou, Y., … Chen, S. (2023, February 27). MOLECULAR ECOLOGY RESOURCES.

co-author countries: Austria 🇦🇹 China 🇨🇳
author keywords: allele; allopolyploid; genome; Populus alba 'Berolinensis'; salinity stress; triploid
MeSH headings : Triploidy; Populus / genetics; Plant Breeding; Diploidy; Chromosomes
Source: Web Of Science
Added: March 27, 2023

2023 journal article

Multiplex CRISPR editing of wood for sustainable fiber production

SCIENCE, 381(6654), 216-+.

By: D. Sulis n, X. Jiang n, C. Yang n, B. Marques n, M. Matthews n, Z. Miller n, K. Lan n, C. Cofre-Vega n ...

co-author countries: China 🇨🇳
Sources: Web Of Science, ORCID
Added: August 9, 2023

2023 journal article

Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties

CARBOHYDRATE POLYMERS, 314.

By: X. Peng*, B. Tong*, J. Lee*, K. Wang*, X. Yu*, X. Huang*, J. Wen*, M. Makarem* ...

co-author countries: China 🇨🇳
author keywords: Nanocellulose microfibril; Poplar; Gibberellin; Pulp
MeSH headings : Gibberellins; Xylem / genetics; Xylem / metabolism; Mixed Function Oxygenases / metabolism; Wood / metabolism; Cellulose / chemistry; Arabidopsis / genetics; Arabidopsis / metabolism; Populus / genetics; Populus / metabolism
Source: Web Of Science
Added: May 30, 2023

2022 journal article

Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change

FRONTIERS IN PLANT SCIENCE, 13.

By: X. Li*, K. Cai*, Z. Han*, S. Zhang*, A. Sun*, Y. Xie, R. Han*, R. Guo* ...

co-author countries: China 🇨🇳 Sweden 🇸🇪
author keywords: Acer pseudosieboldianum; PacBio SMRT; HiFi; genome assembly; Hi-C; TCPs
Source: Web Of Science
Added: April 18, 2022

2022 journal article

Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus

FRONTIERS IN PLANT SCIENCE, 13.

By: Y. Zhao*, Q. Guo*, S. Cao*, Y. Tian*, K. Han*, Y. Sun*, J. Li*, Q. Yang* ...

co-author countries: China 🇨🇳
author keywords: AlkB homologs; poplar 84K; m(6)A RNA methylation; demethylase; salt
Source: Web Of Science
Added: October 31, 2022

2022 journal article

Morphological and Comparative Transcriptome Analysis of Three Species of Five-Needle Pines: Insights Into Phenotypic Evolution and Phylogeny

FRONTIERS IN PLANT SCIENCE, 13.

By: X. Li*, K. Cai*, Q. Zhao*, H. Li*, X. Wang*, M. Tigabu*, R. Sederoff n, W. Ma*, X. Zhao*

co-author countries: China 🇨🇳 Sweden 🇸🇪
author keywords: five-needle pines; Pinus koraiensis; Pinus sibirica; Pinus pumila; transcriptome sequencing; SSRs; Pinus phylogeny
Source: Web Of Science
Added: March 7, 2022

2022 journal article

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

GIGASCIENCE, 11.

By: X. Li*, K. Cai*, Q. Zhang*, X. Pei*, S. Chen*, L. Jiang*, Z. Han*, M. Zhao* ...

co-author countries: China 🇨🇳 Sweden 🇸🇪
author keywords: Juglans mandshurica; PacBio SMART; Hi-C; HiFi; genome assembly; comparative genomics; juglone; lipid
MeSH headings : Chromosomes; Genome; Juglans / genetics; Lipids; Naphthoquinones
Source: Web Of Science
Added: September 19, 2022

2022 article

The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion

Wang, H., Lu, Y., Zhang, T., Liu, Z., Cao, L., Chang, Q., … Zheng, Z. (2022, December 10). PLANT PHYSIOLOGY, Vol. 12.

By: H. Wang*, Y. Lu*, T. Zhang*, Z. Liu*, L. Cao*, Q. Chang*, Y. Liu*, X. Lu* ...

co-author countries: China 🇨🇳
MeSH headings : Phenotype; Sapindaceae / genetics; Magnoliopsida / genetics; DNA Transposable Elements / genetics; Flowers / genetics; Gene Expression Regulation, Plant
Sources: Web Of Science, ORCID
Added: February 20, 2023

2022 article

The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., … Li, Q. (2022, May 9). NATURE PLANTS.

By: X. Huang*, W. Wang, T. Gong*, D. Wickell, L. Kuo, X. Zhang, J. Wen, H. Kim* ...

co-author countries: China 🇨🇳
MeSH headings : Animals; Atelinae / genetics; Ferns / genetics; Genome, Plant; Phylogeny; Spiders / genetics
Source: Web Of Science
Added: May 23, 2022

2022 article

Ubiquitinated DA1 negatively regulates vascular cambium activity through modulating the stability of WOX4 in Populus

Tang, X., Wang, C., Chai, G., Wang, D., Xu, H., Liu, Y., … Zhou, G. (2022, June 15). PLANT CELL.

By: X. Tang*, C. Wang*, G. Chai*, D. Wang*, H. Xu*, Y. Liu*, G. He*, S. Liu* ...

co-author countries: China 🇨🇳
MeSH headings : Cambium; Gene Regulatory Networks; Populus; Transcription Factors; Ubiquitins; Wood; Xylem
Source: Web Of Science
Added: July 5, 2022

2021 journal article

A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182.

By: M. Matthews*, J. Wang n, R. Sederoff n, V. Chiang n & C. Williams n

co-author countries: China 🇨🇳
author keywords: Lignin biosynthesis; Multiscale modeling; Cross-regulatory influences; Random forests
Sources: Web Of Science, ORCID
Added: September 20, 2021

2021 review

An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use

[Review of ]. HORTICULTURAE, 7(8).

co-author countries: China 🇨🇳 Sweden 🇸🇪
author keywords: conifers; flowering; seed production; pollination; phytohormones; tree management; nutrient fertilization
Sources: Web Of Science, ORCID
Added: September 7, 2021

2021 journal article

BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAl5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar

FRONTIERS IN PLANT SCIENCE, 12.

By: Q. Wang*, X. Dai*, H. Pang*, Y. Cheng*, X. Huang*, H. Li*, X. Yan*, F. Lu* ...

co-author countries: China 🇨🇳
author keywords: lignin; BEL1-like homeodomain protein; transcription factor; yeast one hybrid
Source: Web Of Science
Added: July 19, 2021

2021 article

BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021)

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021, September 9). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021). FRONTIERS IN PLANT SCIENCE, Vol. 12.

By: Q. Wang*, X. Dai*, H. Pang*, Y. Cheng*, X. Huang*, H. Li*, X. Yan*, F. Lu* ...

co-author countries: China 🇨🇳
author keywords: lignin; BEL1-like homeodomain protein; transcription factor; yeast one hybrid
Source: Web Of Science
Added: November 29, 2021

2021 journal article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

By: C. Lin n, Y. Sun*, J. Song n, H. Chen n, R. Shi n, C. Yang n, J. Liu n, S. Tunlaya-Anukit n ...

co-author countries: China 🇨🇳
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
Sources: Web Of Science, ORCID
Added: November 8, 2021

2021 article

Epigenetic modification associated with climate regulates betulin biosynthesis in birch

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). JOURNAL OF FORESTRY RESEARCH, Vol. 12.

By: J. Wang*, B. Chen*, S. Ali*, T. Zhang*, Y. Wang*, H. Zhang*, L. Wang*, Y. Zhang* ...

co-author countries: China 🇨🇳 India 🇮🇳
author keywords: Epigenetics; DNA methylation; Betulin; bHLH9 transcription factor; Hormesis; Climate change; Secondary metabolite
Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 review

MYB-Mediated Regulation of Anthocyanin Biosynthesis

[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6).

co-author countries: China 🇨🇳
author keywords: MYB; transcription factor; anthocyanin; positive regulation; negative regulation; environment; MBW complexes
MeSH headings : Anthocyanins / biosynthesis; Gene Expression Regulation, Plant; Gene Regulatory Networks; Phylogeny; Plant Proteins / chemistry; Plant Proteins / metabolism; Transcription Factors / chemistry; Transcription Factors / metabolism
Source: Web Of Science
Added: May 24, 2021

2021 journal article

Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana)

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19).

By: X. Li*, Y. Li*, M. Zhao*, Y. Hu*, F. Meng*, X. Song*, M. Tigabu*, V. Chiang n ...

co-author countries: China 🇨🇳 Sweden 🇸🇪
author keywords: Padus virginiana; leaf color; anthocyanin biosynthesis; transcriptomics; metabolomic
MeSH headings : Anthocyanins / biosynthesis; Biosynthetic Pathways; Chlorophyll / biosynthesis; Color; Computational Biology / methods; Gene Expression Profiling; Gene Expression Regulation, Plant; Metabolome; Metabolomics / methods; Pigmentation / genetics; Plant Leaves / genetics; Plant Leaves / metabolism; Prunus / physiology; Transcriptome
Source: Web Of Science
Added: October 26, 2021

2021 journal article

Qu-2, a robust poplar suspension cell line for molecular biology

JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740.

By: C. Liu*, K. Li*, M. Wang*, E. Fan*, C. Yang*, J. Wang*, P. Fu*, X. Ge* ...

co-author countries: China 🇨🇳

Contributors: C. Liu*, K. Li*, M. Wang*, E. Fan*, C. Yang*, J. Wang*, P. Fu*, X. Ge* ...

author keywords: Qu-2 cell line; Suspension cell; Poplar; Protoplast isolation; Transient transformation
Sources: Web Of Science, ORCID
Added: January 4, 2021

2021 article

Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus

Li, H., Dai, X., Huang, X., Xu, M., Wang, Q., Yan, X., … Li, Q. (2021, October 4). JOURNAL OF INTEGRATIVE PLANT BIOLOGY.

By: H. Li*, X. Dai*, X. Huang*, M. Xu*, Q. Wang*, X. Yan*, R. Sederoff n, Q. Li*

co-author countries: China 🇨🇳
author keywords: differentiating trajectory; differentiating xylem; marker genes; Populus alba x Populus glandulosa; single-cell RNA-seq; wood formation
MeSH headings : Cell Differentiation; Cell Wall / metabolism; Gene Expression Profiling; Genome, Plant; Populus / cytology; Populus / genetics; Populus / metabolism; Sequence Analysis, RNA; Single-Cell Analysis; Xylem / cytology
Source: Web Of Science
Added: October 12, 2021

2020 review

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease

[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.

By: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

co-author countries: China 🇨🇳 Germany 🇩🇪

Contributors: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

author keywords: microbial interaction; biological control agents; soil-borne disease; consortia; microbiome and community
Sources: Web Of Science, ORCID
Added: November 16, 2020

2019 journal article

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa

NEW PHYTOLOGIST, 222(1), 244–260.

By: X. Yan*, J. Liu n, H. Kim*, B. Liu*, X. Huang*, Z. Yang n, Y. Lin*, H. Chen n ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: X. Yan*, J. Liu n, H. Kim*, B. Liu*, X. Huang*, Z. Yang n, Y. Lin*, H. Chen n ...

author keywords: co-immunoprecipitation; enzyme activity; monolignol biosynthetic pathway; nuclear magnetic resonance (NMR); Populus trichocarpa; stem-differentiating xylem protein
MeSH headings : Aldehyde Oxidoreductases / genetics; Aldehyde Oxidoreductases / metabolism; Down-Regulation / genetics; Gene Expression Regulation, Plant; Lignin / metabolism; Magnetic Resonance Spectroscopy; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Populus / genetics; Populus / metabolism; RNA Interference; Recombinant Proteins / metabolism; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: December 17, 2018

2019 article

Editorial: Forest Genomics and Biotechnology

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). FRONTIERS IN PLANT SCIENCE, Vol. 10.

By: I. Allona*, M. Kirst*, W. Boerjan*, S. Strauss* & R. Sederoff n

co-author countries: Belgium 🇧🇪 Spain 🇪🇸
author keywords: tree; forest plantation; conifers; angiosperms; wood
Source: Web Of Science
Added: December 9, 2019

2019 review

Enzyme-Enzyme Interactions in Monolignol Biosynthesis

[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.

By: J. Wang n, B. Liu*, Y. Sun*, V. Chiang n & R. Sederoff n

co-author countries: China 🇨🇳

Contributors: J. Wang n, B. Liu*, Y. Sun*, V. Chiang n & R. Sederoff n

author keywords: monolignol biosynthesis; protein-protein interaction; lignin; enzyme kinetics; BiFC; co-immunoprecipitation
Sources: Web Of Science, ORCID
Added: January 28, 2019

2018 journal article

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis

PLOS ONE, 13(3), e0193896.

By: P. Naik n, J. Wang n, R. Sederoff n, V. Chiang n, C. Williams n & J. Ducoste n

Contributors: P. Naik n, J. Wang n, R. Sederoff n, V. Chiang n, C. Williams n & J. Ducoste n

Ed(s): D. Cullen

MeSH headings : Biosynthetic Pathways; Homeostasis; Lignin / biosynthesis; Metabolic Networks and Pathways; Monte Carlo Method; Plant Proteins / metabolism; Populus / enzymology; Populus / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2018 journal article

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Nature Communications, 9(1), 1579.

By: J. Wang n, M. Matthews n, C. Williams n, R. Shi n, C. Yang n, S. Tunlaya-Anukit n, H. Chen n, Q. Li* ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: J. Wang n, M. Matthews n, C. Williams n, R. Shi n, C. Yang n, S. Tunlaya-Anukit n, H. Chen n, Q. Li* ...

MeSH headings : Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / genetics; Plants, Genetically Modified / genetics; Populus / genetics; Populus / metabolism; Transcriptome / genetics; Trees / genetics; Trees / metabolism; Wood / chemistry; Wood / physiology; Xylem / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729.

By: Y. Lin n, H. Chen n, Q. Li*, W. Li n, J. Wang n, R. Shi n, S. Tunlaya-Anukit n, P. Shuai n ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: Y. Lin n, H. Chen n, Q. Li*, W. Li n, J. Wang n, R. Shi n, S. Tunlaya-Anukit n, P. Shuai n ...

author keywords: reciprocal cross-regulation; NAC transcription factors; alternative splicing; wood formation; Populus trichocarpa
MeSH headings : Alternative Splicing; Cell Wall / genetics; Cell Wall / metabolism; Cloning, Molecular; DNA, Plant; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genes, Plant; Homeostasis; Multigene Family; Nuclear Proteins; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Shoots / genetics; Plant Shoots / metabolism; Populus / genetics; Populus / metabolism; Recombinant Proteins / genetics; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptional Activation / genetics; Transcriptome; Wood / genetics; Wood / growth & development; Xylem / genetics; Xylem / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa

PLANTA, 245(5), 927–938.

By: R. Shi n, J. Wang n, Y. Lin n, Q. Li*, Y. Sun*, H. Chen n, R. Sederoff n, V. Chiang*

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: R. Shi n, J. Wang n, Y. Lin n, Q. Li*, Y. Sun*, H. Chen n, R. Sederoff n, V. Chiang*

author keywords: Wood formation; Transcriptome; Fiber cells; Vessel elements; Cell wall biosynthesis; Co-expression network
MeSH headings : Cell Wall / metabolism; Cellulose / metabolism; Cluster Analysis; Gene Expression Regulation, Plant; Lignin / metabolism; Molecular Sequence Annotation; Organ Specificity; Phloem / genetics; Phloem / growth & development; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Proteins / genetics; Populus / genetics; Populus / growth & development; Sequence Analysis, RNA; Transcription Factors / genetics; Transcriptome; Wood / genetics; Wood / growth & development; Xylem / genetics; Xylem / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa

Tree Genetics & Genomes, 12(2).

By: C. Lin n, Q. Li*, S. Tunlaya-Anukit*, R. Shi n, Y. Sun*, J. Wang n, J. Liu n, P. Loziuk n ...

co-author countries: China 🇨🇳 Thailand 🇹🇭 Taiwan, Province of China 🇹🇼

Contributors: C. Lin n, Q. Li*, S. Tunlaya-Anukit*, R. Shi n, Y. Sun*, J. Wang n, J. Liu n, P. Loziuk n ...

author keywords: Lignin polymerization; Populus trichocarpa; Lignin peroxidase; LC-MS/MS; Lignin systems biology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

MOLECULAR PLANT, 8(1), 176–187.

By: C. Lin n, J. Wang n, Q. Li*, H. Chen n, J. Liu n, P. Loziuk n, J. Song n, C. Williams n ...

co-author countries: China 🇨🇳

Contributors: C. Lin n, J. Wang n, Q. Li*, H. Chen n, J. Liu n, P. Loziuk n, J. Song n, C. Williams n ...

author keywords: monolignol biosynthesis; Populus trichocarpa; metabolic flux; reaction and inhibition kinetics; LC-MS/MS; 4-coumaroyl and caffeoyl shikimic acids
MeSH headings : Acyl Coenzyme A / metabolism; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Hydroxylation / drug effects; Plant Proteins / metabolism; Populus / drug effects; Populus / enzymology; Populus / metabolism; Propionates; Shikimic Acid / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa

JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.

By: P. Loziuk n, J. Parker n, W. Li n, C. Lin n, J. Wang n, Q. Li*, R. Sederoff n, V. Chiang n, D. Muddiman n

co-author countries: China 🇨🇳

Contributors: P. Loziuk n, J. Parker n, W. Li n, C. Lin n, J. Wang n, Q. Li*, R. Sederoff n, V. Chiang n, D. Muddiman n

author keywords: shotgun discovery proteomics; absolute quantification; PC-IDMS; cellulose biosynthesis; transcription factor; targeted mass spectrometiry; SRM
MeSH headings : Carbohydrate Metabolism; Cellulose / biosynthesis; Cellulose / genetics; Chromatography, Liquid; Gene Expression Regulation, Plant; Molecular Sequence Annotation; Plant Proteins / genetics; Plant Proteins / isolation & purification; Plant Proteins / metabolism; Populus / genetics; Populus / metabolism; Proteome / genetics; Proteome / isolation & purification; Proteome / metabolism; Proteomics; Tandem Mass Spectrometry; Transcription Factors / genetics; Transcription Factors / isolation & purification; Transcription Factors / metabolism; Wood / chemistry; Wood / metabolism; Xylem / genetics; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis

Proceedings of the National Academy of Sciences, 112(27), 8481–8486.

By: J. Wang n, L. Chuang n, P. Loziuk n, H. Chen n, Y. Lin n, R. Shi n, G. Qu*, D. Muddiman n, R. Sederoff n, V. Chiang n

co-author countries: China 🇨🇳

Contributors: J. Wang n, L. Chuang n, P. Loziuk n, H. Chen n, Y. Lin n, R. Shi n, G. Qu*, D. Muddiman n, R. Sederoff n, V. Chiang n

author keywords: AldOMT; COMT; lignin; phosphoproteomics; phosphoregulation
MeSH headings : Acrolein / analogs & derivatives; Acrolein / metabolism; Amino Acid Sequence; Binding Sites / genetics; Biocatalysis; Catechols / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Isoenzymes / genetics; Isoenzymes / metabolism; Lignin / biosynthesis; Methyltransferases / genetics; Methyltransferases / metabolism; Microscopy, Confocal; Molecular Sequence Data; Mutation; Phosphoproteins / metabolism; Phosphorylation; Plant Proteins / genetics; Plant Proteins / metabolism; Populus / enzymology; Populus / genetics; Populus / metabolism; Proteomics / methods; Protoplasts / enzymology; Protoplasts / metabolism; Sequence Homology, Amino Acid; Tandem Mass Spectrometry
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 article

Populus trichocarpa

AGROBACTERIUM PROTOCOLS, VOLUME 2, THIRD EDITION, Vol. 1224, pp. 357–363.

By: Q. Li*, T. Yeh*, C. Yang*, J. Song*, Z. Chen*, R. Sederoff*, V. Chiang*

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼
author keywords: Agrobacterium tumefaciens; Genetic transformation; Populus trichocarpa; Transgenic trees
MeSH headings : Agrobacterium tumefaciens / genetics; Agrobacterium tumefaciens / growth & development; Coculture Techniques; Genetic Engineering / methods; Plant Roots / growth & development; Plant Shoots / growth & development; Populus / genetics; Populus / growth & development; Populus / physiology; Regeneration; Transformation, Genetic
Source: Web Of Science
Added: August 6, 2018

2014 journal article

A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue

NATURE PROTOCOLS, 9(9), 2180–2193.

By: W. Li n, Y. Lin n, Q. Li n, R. Shi n, C. Lin n, H. Chen n, L. Chuang n, G. Qu*, R. Sederoff n, V. Chiang n

co-author countries: China 🇨🇳
MeSH headings : Base Sequence; Chromatin Immunoprecipitation / methods; DNA / metabolism; DNA Fragmentation; Histones / metabolism; Immunoprecipitation; Molecular Sequence Data; Populus / cytology; Populus / metabolism; Sequence Analysis, DNA; Transcription Factors / metabolism; Wood / cytology; Xylem / genetics; Xylem / metabolism
Source: Web Of Science
Added: August 6, 2018

2014 journal article

A simple improved-throughput xylem protoplast system for studying wood formation

NATURE PROTOCOLS, 9(9), 2194–2205.

By: Y. Lin n, W. Li n, H. Chen n, Q. Li n, Y. Sun*, R. Shi n, C. Lin n, J. Wang n ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: Y. Lin n, W. Li n, H. Chen n, Q. Li n, Y. Sun*, R. Shi n, C. Lin n, J. Wang n ...

MeSH headings : Cell Wall / metabolism; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Green Fluorescent Proteins; Populus / cytology; Populus / growth & development; Protoplasts / metabolism; Transfection / methods; Wood / cytology; Wood / growth & development; Xylem / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

GENOME BIOLOGY, 15(3).

By: D. Neale*, J. Wegrzyn*, K. Stevens*, A. Zimin*, D. Puiu*, M. Crepeau*, C. Cardeno*, M. Koriabine ...

MeSH headings : Contig Mapping / methods; DNA, Plant / genetics; Genome, Plant; Haploidy; Pinus taeda / genetics; Sequence Analysis, DNA / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry

ANALYST, 139(21), 5439–5450.

By: P. Loziuk n, R. Sederoff n, V. Chiang n & D. Muddiman n

MeSH headings : Chromatography, Liquid; Isotopes / chemistry; Proteins / analysis; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

The Plant Cell, 26(3), 876–893.

By: H. Chen n, J. Song n, J. Wang n, Y. Lin n, J. Ducoste n, C. Shuford n, J. Liu n, Q. Li n ...

co-author countries: China 🇨🇳

Contributors: H. Chen n, J. Song n, J. Wang n, Y. Lin n, J. Ducoste n, C. Shuford n, J. Liu n, Q. Li n ...

MeSH headings : Coenzyme A Ligases / genetics; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Immunoprecipitation; Lignin / biosynthesis; Mass Spectrometry; Models, Biological; Populus / metabolism; Propionates; RNA, Messenger / genetics; Substrate Specificity; Systems Biology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 article

GENOMICS A spruce sequence

Sederoff, R. (2013, May 30). NATURE, Vol. 497, pp. 569–570.

By: R. Sederoff n

MeSH headings : Evolution, Molecular; Genome, Plant / genetics; Picea / genetics
Source: Web Of Science
Added: August 6, 2018

2013 journal article

High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer

PLANT BIOTECHNOLOGY, 30(2), 191–198.

By: E. Liu n, S. Peng, Q. Li n, Y. Sun*, V. Chiang n & R. Sederoff n

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼
author keywords: PtrCOMT2 promoter; xylem-specific; 4 x 35S enhancer; woody plants; genetic engineering
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

PLANT PHYSIOLOGY, 161(3), 1501–1516.

By: H. Chen n, J. Song n, C. Williams n, C. Shuford n, J. Liu n, J. Wang n, Q. Li n, R. Shi n ...

Contributors: H. Chen n, J. Song n, C. Williams n, C. Shuford n, J. Liu n, J. Wang n, Q. Li n, R. Shi n ...

MeSH headings : Allosteric Regulation / drug effects; Binding Sites; Biosynthetic Pathways / drug effects; Blotting, Western; Caffeic Acids / pharmacology; Coenzyme A / metabolism; Coenzyme A Ligases / antagonists & inhibitors; Coenzyme A Ligases / metabolism; Computer Simulation; Coumaric Acids / chemistry; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Kinetics; Lignin / biosynthesis; Lignin / chemistry; Phenylpropionates / metabolism; Phosphoproteins / metabolism; Phosphorylation / drug effects; Plant Extracts; Populus / drug effects; Populus / enzymology; Propionates; Proteomics; Recombinant Fusion Proteins / metabolism; Sequence Homology, Amino Acid; Substrate Specificity / drug effects; Xylem / drug effects; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

Proceedings of the National Academy of Sciences, 110(26), 10848–10853.

By: S. Lu*, Q. Li n, H. Wei*, M. Chang*, S. Tunlaya-Anukit n, H. Kim*, J. Liu n, J. Song* ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼
MeSH headings : Base Sequence; Down-Regulation / genetics; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Laccase / antagonists & inhibitors; Laccase / genetics; Lignin / antagonists & inhibitors; Lignin / chemistry; Lignin / metabolism; MicroRNAs / genetics; MicroRNAs / metabolism; Phylogeny; Plant Proteins / genetics; Populus / enzymology; Populus / genetics; RNA, Plant / genetics; RNA, Plant / metabolism
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2013 journal article

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

Planta, 238(3), 487–497.

By: R. Shi n, C. Shuford n, J. Wang n, Y. Sun n, Z. Yang n, H. Chen n, S. Tunlaya-Anukit n, Q. Li n ...

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼

Contributors: R. Shi n, C. Shuford n, J. Wang n, Y. Sun n, Z. Yang n, H. Chen n, S. Tunlaya-Anukit n, Q. Li n ...

MeSH headings : Gene Expression Regulation, Plant / physiology; Mass Spectrometry; Phenylalanine Ammonia-Lyase / metabolism; Populus / enzymology; Populus / metabolism
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa

PLANT CELL, 25(11), 4324–4341.

co-author countries: China 🇨🇳 Taiwan, Province of China 🇹🇼
MeSH headings : Algorithms; Cell Wall / genetics; Chromatin Immunoprecipitation; Gene Expression Regulation, Plant; Gene Ontology; Gene Regulatory Networks; High-Throughput Nucleotide Sequencing; Models, Genetic; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Polymerase Chain Reaction / methods; Populus / genetics; Populus / metabolism; Protoplasts; Reproducibility of Results; Transcription Factors / genetics; Transcription Factors / metabolism; Transfection; Wood / genetics; Wood / metabolism; Xylem / cytology; Xylem / genetics
Source: Web Of Science
Added: August 6, 2018

2013 journal article

The Amborella Genome and the Evolution of Flowering Plants

Science, 342(6165), 1456–1457.

By: V. Albert, W. Barbazuk, C. dePamphilis, J. Der, J. Leebens-Mack, H. Ma, J. Palmer, S. Rounsley ...

Contributors: C. DePamphilis, J. Palmer, S. Rounsley, D. Sankoff, S. Schuster, J. Ammiraju, W. Barbazuk, S. Chamala ...

MeSH headings : Conservation of Natural Resources; Contig Mapping; Evolution, Molecular; Flowers / genetics; Gene Duplication; Genetic Variation; Genome, Plant; Metagenomics / statistics & numerical data; Molecular Sequence Annotation; Multigene Family; New Caledonia; Phylogeny; Sequence Analysis, DNA; Tracheophyta / classification; Tracheophyta / genetics; Tracheophyta / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments

JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.

By: P. Loziuk n, J. Wang n, Q. Li n, R. Sederoff n, V. Chiang n & D. Muddiman n

Contributors: P. Loziuk n, J. Wang n, Q. Li n, R. Sederoff n, V. Chiang n & D. Muddiman n

author keywords: design of experiments; proteolytic digestion; LC-MS/MS; Populus trichocarpa
MeSH headings : Amino Acid Sequence; Animals; Cattle; Chromatography, Liquid / standards; Factor Analysis, Statistical; Hydrogen-Ion Concentration; Isotope Labeling; Molecular Sequence Annotation; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / isolation & purification; Plant Proteins / chemistry; Plant Proteins / isolation & purification; Populus / chemistry; Protein Stability; Proteolysis; Proteomics / methods; Proteomics / standards; Research Design; Swine; Tandem Mass Spectrometry / standards; Trypsin / chemistry; Xylem / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

PLANTA, 236(3), 879–885.

By: J. Liu n, R. Shi n, Q. Li n, R. Sederoff n & V. Chiang n

author keywords: Monolignols; Enzyme activity; Populus trichocarpa; Pinus taeda; Angiosperm; Gymnosperm
MeSH headings : Biosynthetic Pathways; Chromatography, High Pressure Liquid; Enzyme Assays; Lignin / biosynthesis; Methyltransferases / metabolism; Mixed Function Oxygenases / metabolism; Oxidoreductases / metabolism; Pinus taeda / enzymology; Plant Proteins / analysis; Plant Stems / enzymology; Populus / enzymology; Substrate Specificity; Xylem / enzymology
Source: Web Of Science
Added: August 6, 2018

2012 journal article

A transcriptome-based genetic map of Chinese chestnut (Castanea mollissima) and identification of regions of segmental homology with peach (Prunus persica)

Tree Genetics & Genomes, 9(2), 557–571.

By: T. Kubisiak*, C. Nelson*, M. Staton*, T. Zhebentyayeva*, C. Smith n, B. Olukolu*, G. Fang*, F. Hebard* ...

author keywords: Fagaceae; Castanea spp.; Chestnut; Genetic map; Comparative genomics; Disease resistance
Sources: Web Of Science, Crossref
Added: August 6, 2018

2012 journal article

Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry

Journal of Proteome Research, 11(6), 3390–3404.

By: C. Shuford n, Q. Li n, Y. Sun n, H. Chen n, J. Wang n, R. Shi n, R. Sederoff n, V. Chiang n, D. Muddiman n

Contributors: C. Shuford n, Q. Li n, Y. Sun n, H. Chen n, J. Wang n, R. Shi n, R. Sederoff n, V. Chiang n, D. Muddiman n

author keywords: quantification; isotope dilution mass spectrometry; selected reaction monitoring; filter-aided sample preparation; monolignol biosynthesis
MeSH headings : Amino Acid Sequence; Biosynthetic Pathways; Isotope Labeling; Molecular Sequence Data; Plant Proteins / chemistry; Plant Proteins / metabolism; Populus / enzymology; Proteome / chemistry; Proteome / metabolism; Reference Standards; Spectrometry, Mass, Electrospray Ionization / standards; Xylem / enzymology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis

PLANTA, 236(3), 795–808.

By: J. Wang n, C. Shuford n, Q. Li n, J. Song n, Y. Lin n, Y. Sun n, H. Chen n, C. Williams n ...

Contributors: J. Wang n, C. Shuford n, Q. Li n, J. Song n, Y. Lin n, Y. Sun n, H. Chen n, C. Williams n ...

author keywords: Lignin; Syringyl lignin; Angiosperm; Kinetics; Subcellular localization
MeSH headings : Cloning, Molecular; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Hydroxylation; Kinetics; Lignin / analysis; Lignin / biosynthesis; Mixed Function Oxygenases / metabolism; Plants, Genetically Modified; Populus / metabolism; Xylem / enzymology; Yeasts / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

MicroRNAs in trees

PLANT MOLECULAR BIOLOGY, 80(1), 37–53.

By: Y. Sun n, R. Shi n, X. Zhang n, V. Chiang n & R. Sederoff n

author keywords: MicroRNA; Woody plant; Gene regulation; Plant development; Plant stress response; Artificial microRNA
MeSH headings : Gene Expression Regulation, Plant; MicroRNAs / genetics; MicroRNAs / metabolism; Models, Genetic; Phylogeny; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / genetics; RNA, Plant / metabolism; Trees / classification; Trees / genetics; Trees / metabolism
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704.

By: Q. Li n, Y. Lin n, Y. Sun n, J. Song n, H. Chen n, X. Zhang*, R. Sederoff n, V. Chiang n

MeSH headings : Blotting, Western; Cloning, Molecular; DNA Primers / genetics; Dimerization; Electrophoresis, Polyacrylamide Gel; Gene Regulatory Networks / genetics; Homeostasis / physiology; Models, Biological; Plasmids / genetics; Populus / genetics; Protein Isoforms / genetics; Protein Transport; Real-Time Polymerase Chain Reaction; Transcription Factors / genetics
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258.

By: H. Chen*, Q. Li*, C. Shuford n, J. Liu, D. Muddiman n, R. Sederoff*, V. Chiang*

MeSH headings : Carboxylic Ester Hydrolases / chemistry; Carboxylic Ester Hydrolases / metabolism; Chromatography, Liquid; Coumaric Acids; DNA Primers / genetics; Hydroxylation; Immunoprecipitation; Kinetics; Lignin / biosynthesis; Mass Spectrometry; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Microscopy, Confocal; Molecular Structure; Multiprotein Complexes / chemistry; Multiprotein Complexes / metabolism; Phenols; Phenylpropionates; Plasmids / genetics; Populus / metabolism; Propionates; Trans-Cinnamate 4-Monooxygenase / chemistry; Trans-Cinnamate 4-Monooxygenase / metabolism; Xylem / metabolism; Yeasts
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Arabidopsis thaliana as a model for gelatinous fiber formation

RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, 57(3), 363–367.

co-author countries: Israel 🇮🇱
author keywords: Arabidpsis thaliana; cambium; gelatinous fibers; gravity; reaction wood; tension wood
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Genomics of forest and ecosystem health in the Fagaceae: meeting report

TREE GENETICS & GENOMES, 6(5), 815–820.

By: A. Kremer*, R. Sederoff n & N. Wheeler n

co-author countries: France 🇫🇷
author keywords: Fagaceae; Genomics
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees

PLANT PHYSIOLOGY, 154(2), 555–561.

Contributors: E. Novaes n, M. Kirst n, V. Chiang n, H. Winter-Sederoff & R. Sederoff n

MeSH headings : Biomass; Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / chemistry; Transcription Factors / metabolism; Trees / genetics; Trees / growth & development; Trees / metabolism; Wood / genetics; Wood / growth & development; Wood / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa

PLANTA, 232(6), 1281–1288.

By: R. Shi n, C. Yang n, S. Lu n, R. Sederoff n & V. Chiang n

author keywords: Artificial microRNA; Phenylalanine ammonia-lyase; Populus trichocarpa transformation; Down-regulation; PolyA tailing-based real time RT-PCR; Quantitation
MeSH headings : Base Sequence; DNA Primers; Down-Regulation; Genes, Plant; MicroRNAs / physiology; Mutation; Populus / genetics; Reverse Transcriptase Polymerase Chain Reaction; Sequence Homology, Nucleic Acid
Source: Web Of Science
Added: August 6, 2018

2010 review

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.

By: R. Shi n, Y. Sun n, Q. Li n, S. Heber n, R. Sederoff n & V. Chiang n

author keywords: Lignin systems biology; Monolignol biosynthesis; Populus trichocarpa; Promoter motifs; Transcript abundance; Xylem-specific expression
MeSH headings : Amino Acid Motifs / genetics; Biosynthetic Pathways / genetics; Enzymes / biosynthesis; Enzymes / genetics; Gene Expression Regulation, Enzymologic / physiology; Gene Expression Regulation, Plant / physiology; Genome, Plant / genetics; Lignin / biosynthesis; Lignin / genetics; Phloem / enzymology; Phloem / genetics; Plant Shoots / enzymology; Plant Shoots / genetics; Populus / genetics; Populus / metabolism; Promoter Regions, Genetic / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / analysis; RNA, Plant / genetics; RNA, Plant / metabolism; Transcription, Genetic / physiology; Xylem / enzymology; Xylem / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

BMC PLANT BIOLOGY, 9.

By: A. Barakat*, D. DiLoreto*, Y. Zhang*, C. Smith n, K. Baier*, W. Powell*, N. Wheeler n, R. Sederoff n, J. Carlson*

MeSH headings : Ascomycota; DNA, Complementary / genetics; Expressed Sequence Tags; Fagaceae / genetics; Fagaceae / microbiology; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Library; Genes, Plant; Genomics; Plant Diseases / genetics; RNA, Plant / genetics; Sequence Analysis, DNA
Source: Web Of Science
Added: August 6, 2018

2009 review

Genomics of growth traits in forest trees

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(2), 148–156.

co-author countries: Brazil 🇧🇷 France 🇫🇷
MeSH headings : Genomics; Plants, Genetically Modified; Population Dynamics; Quantitative Trait Loci / genetics; Quantitative Trait, Heritable; Trees / genetics; Trees / growth & development
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Role of genomics in the potential restoration of the American chestnut

TREE GENETICS & GENOMES, 5(1), 181–187.

By: N. Wheeler n & R. Sederoff n

author keywords: Genomics; Chestnut; Restoration
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

TREE PHYSIOLOGY, 28(6), 885–897.

By: A. Adomas n, G. Heller n, A. Olson*, J. Osborne n, M. Karlsson*, J. Nahalkova*, L. Van Zyl n, R. Sederoff n ...

co-author countries: Finland 🇫🇮 Sweden 🇸🇪
author keywords: defence; ectomycorrhiza; Heterobasidion annostan; Laccaria bicolor; microarray; recognition; Trichoderma aureoviride
MeSH headings : Basidiomycota / pathogenicity; Cell Communication; Microscopy, Electron, Scanning; Pinus sylvestris / genetics; Pinus sylvestris / microbiology; Pinus sylvestris / physiology; Plant Diseases / microbiology; Plant Proteins / metabolism; Plant Roots / microbiology; Plant Roots / ultrastructure; Ribosomal Proteins / biosynthesis; Ribosomal Proteins / metabolism; Seedlings / microbiology; Transcription, Genetic; Trichoderma / pathogenicity; Trichoderma / ultrastructure
Source: Web Of Science
Added: August 6, 2018

2008 journal article

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

BMC GENOMICS, 9.

By: E. Novaes*, D. Drost*, W. Farmerie*, G. Pappas*, D. Grattapaglia*, R. Sederoff n, M. Kirst*

co-author countries: Brazil 🇧🇷
MeSH headings : Alleles; DNA, Complementary / biosynthesis; Eucalyptus / genetics; Expressed Sequence Tags; Gene Library; Genes, Plant; Genetic Variation; Haplotypes; Polymorphism, Single Nucleotide / genetics; Reproducibility of Results; Sequence Analysis, DNA / methods; Software; Transcription, Genetic
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor

BMC Plant Biology, 8.

By: G. Heller, A. Adomas, G. Li, J. Osborne, L. Van Zyl, R. Sederoff, R. Finlay, J. Stenlid, F. Asiegbu

Source: NC State University Libraries
Added: August 6, 2018

2007 article

Regulatory science in forest biotechnology

Sederoff, R. (2007, April). TREE GENETICS & GENOMES, Vol. 3, pp. 71–74.

By: R. Sederoff n

Source: Web Of Science
Added: August 6, 2018

2007 journal article

Synthesis of hydroxyphenylpropanoid beta-D-glucosides

JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 27(1), 1–8.

By: M. Mazur*, K. Hope-Ross*, J. Kadla*, R. Sederoff n & H. Chang n

co-author countries: Canada 🇨🇦
author keywords: dihydroconiferyl alcohol glucoside; coniferin; synthesis; monolignol
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Trranscript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion

TREE PHYSIOLOGY, 27(10), 1441–1458.

By: A. Adomas*, G. Heller*, G. Li*, A. Olson*, T. Chu*, J. Osborne n, D. Craig n, L. Van Zyl n ...

co-author countries: Sweden 🇸🇪
author keywords: antimicrobial peptide; microarray; peroxidase; phenylopropanoid pathway; pine; plant defence
MeSH headings : Fungi / physiology; Gene Expression Profiling; Gene Expression Regulation, Plant; Oligonucleotide Array Sequence Analysis; Pinus sylvestris / metabolism; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / metabolism; Plant Roots / microbiology; Plant Roots / ultrastructure; Seedlings
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays

BMC Genomics, 6(61).

By: J. Wadenback, D. Clapham, D. Craig, R. Sederoff, G. Peter, S. Von Arnold, U. Egertsdotter

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid

GENETICS, 169(4), 2295–2303.

By: M. Kirst n, C. Basten n, A. Myburg*, Z. Zeng n & R. Sederoff n

co-author countries: South Africa 🇿🇦
MeSH headings : Cell Differentiation; Chimera; Chromosome Mapping; Crosses, Genetic; Eucalyptus / genetics; Gene Expression Regulation; Genes, Plant; Genetic Linkage; Genetic Markers; Genetic Variation; Genome, Plant; Genotype; Nucleic Acid Hybridization; Oligonucleotide Array Sequence Analysis; Phylogeny; Quantitative Trait Loci; RNA, Messenger / metabolism
Source: Web Of Science
Added: August 6, 2018

2005 conference paper

Variation of a-cellulose content and related metabolites during wood formation in loblolly pine

13th ISWFPC Proceedings, 13.

By: C. Morris, B. Goldfarb, F. Isik, C. Li, H. Chang, R. Sederoff, J. Kadla

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Verification of QTL linked markers for propagation traits in Eucalyptus

TREE GENETICS & GENOMES, 1(3), 103–108.

By: C. Marques, V. Carocha, A. Sa*, M. Oliveira*, A. Pires*, R. Sederoff n, N. Borralho*

co-author countries: Portugal 🇵🇹
author keywords: Eucalyptus; AFLP; QTL verification; vegetative propagation; marker-aided selection
Source: Web Of Science
Added: August 6, 2018

2004 journal article

An auxin-inducible gene from loblolly pine ( Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein

Planta, 218(6), 916–927.

By: V. Busov n, E. Johannes n, R. Whetten n, R. Sederoff n, S. Spiker n, C. Lanz-Garcia n, B. Goldfarb n

author keywords: adventitious root formation; auxin; gene expression (5NG4); maturation; nodulin; Pinus
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Down-Regulation; Gene Expression Regulation, Plant; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Molecular Sequence Data; Phylogeny; Pinus taeda / genetics; Pinus taeda / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Shoots / growth & development; Plant Shoots / metabolism; Sequence Alignment; Sequence Homology, Amino Acid
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2004 journal article

Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus

PLANT PHYSIOLOGY, 135(4), 2368–2378.

By: M. Kirst n, A. Myburg n, J. De Leon n, M. Kirst n, J. Scott n & R. Sederoff n

co-author countries: South Africa 🇿🇦
MeSH headings : Base Sequence; Chromosome Mapping; Crosses, Genetic; DNA Primers; Eucalyptus / genetics; Eucalyptus / growth & development; Eucalyptus / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant; Lignin / metabolism; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Quantitative Trait Loci
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Gene Expression during Formation of Earlywood and Latewood in Loblolly Pine: Expression Profiles of 350 Genes

Plant Biology, 6(6), 654–663.

By: U. Egertsdotter*, L. Zyl n, J. MacKay*, G. Peter*, M. Kirst n, C. Clark n, R. Whetten n, R. Sederoff n

co-author countries: Canada 🇨🇦
author keywords: microarray analysis; Pinus taeda; earlywood; latewood; transcript abundance
MeSH headings : Expressed Sequence Tags; Gene Expression Profiling; Gene Expression Regulation, Plant; Genes, Plant; Microarray Analysis; Pinus taeda / genetics; Pinus taeda / metabolism; Reverse Transcriptase Polymerase Chain Reaction; Seasons; Transcription, Genetic
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2004 journal article

Genetics of Postzygotic Isolation in Eucalyptus: Whole-Genome Analysis of Barriers to Introgression in a Wide Interspecific Cross of Eucalyptus grandis and E. globulus

Genetics, 166(3), 1405–1418.

By: A. Myburg n, C. Vogl*, A. Griffin*, R. Sederoff n & R. Whetten n

co-author countries: Australia 🇦🇺
MeSH headings : Alleles; Bayes Theorem; Chi-Square Distribution; Chromosome Mapping; Chromosomes, Plant; Crosses, Genetic; Eucalyptus / genetics; Genetic Linkage; Genetic Markers; Genome, Plant; Hybridization, Genetic; Markov Chains; Monte Carlo Method; Pedigree; Polymorphism, Restriction Fragment Length; Species Specificity
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2004 journal article

Metabolic profiling: A new tool in the study of wood formation

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 52(6), 1427–1434.

By: C. Morris n, J. Scott n, H. Chang n, R. Sederoff n, . D O'Malley & J. Kadla n

co-author countries: Canada 🇨🇦
author keywords: metabolic profiling; principal component analysis (PCA); loblolly pine; xylem tissue; lipid metabolites; polar metabolites
MeSH headings : Cellulose / analysis; Gas Chromatography-Mass Spectrometry; Genotype; Lipid Metabolism; Phenotype; Pinus taeda / chemistry; Pinus taeda / genetics; Pinus taeda / metabolism; Plant Extracts / chemistry; Wood
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Microarray analyses of gene expression during adventitious root development in Pinus contorta (1[w])

PLANT PHYSIOLOGY, 135(3), 1526–1539.

By: M. Brinker n, L. Zyl n, W. Liu n, D. Craig n, R. Sederoff n, D. Clapham n, S. Arnold n

co-author countries: Sweden 🇸🇪
MeSH headings : Cell Division; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Plant / genetics; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis / methods; Pinus / genetics; Pinus / growth & development; Plant Proteins / genetics; Plant Roots / genetics; Plant Roots / growth & development; Polymerase Chain Reaction
Source: Web Of Science
Added: August 6, 2018

2004 journal article

The effect of reduced glutathione on morphology and gene expression of white spruce (Picea glauca) somatic embryos

JOURNAL OF EXPERIMENTAL BOTANY, 55(397), 695–709.

By: C. Stasolla*, M. Belmonte, L. Zyl, D. Craig*, W. Liu, E. Yeung, R. Sederoff*

co-author countries: Canada 🇨🇦
author keywords: embryogenesis; glutathione; microarray; transcript levels
MeSH headings : Desiccation; Enzymes / genetics; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Plant / drug effects; Gene Expression Regulation, Plant / genetics; Glutathione / pharmacology; Glutathione Disulfide / metabolism; Picea / cytology; Picea / drug effects; Picea / embryology; Picea / genetics; Plant Proteins / genetics
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Variation an transcript abundance during somatic embryogenesis in gymnosperms

TREE PHYSIOLOGY, 24(10), 1073–1085.

By: C. Stasolla*, P. Bozhkov*, T. Chu*, L. Van Zyl n, U. Egertsdotter, M. Suarez*, D. Craig n, R. Wolfinger*, S. Von Arnold*, R. Sederoff n

co-author countries: Canada 🇨🇦 Sweden 🇸🇪
author keywords: embryo development; gene expression; hybridization; microarray; Picea abies; Pinus taeda
MeSH headings : Cycadopsida / genetics; Cycadopsida / physiology; Gene Expression Regulation, Plant / physiology; Genetic Variation / physiology; Oligonucleotide Array Sequence Analysis; Picea / genetics; Picea / physiology; Seeds / genetics; Seeds / physiology; Transcription, Genetic / physiology; Trees / genetics; Trees / physiology
Source: Web Of Science
Added: August 6, 2018

2003 journal article

An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine

Plant Molecular Biology, 52(1), 91–102.

By: Y. Zhang n, G. Brown*, R. Whetten n, C. Loopstra*, D. Neale*, M. Kieliszewski*, R. Sederoff n

author keywords: arabinogalactan proteins (AGPs); Pinus taeda; plant cell wall biosynthesis; xylem differentiation
MeSH headings : Amino Acid Sequence; Antibodies, Monoclonal / immunology; Antibody Specificity; Blotting, Western; Cell Wall / metabolism; Chromatography, High Pressure Liquid / methods; Chromosome Mapping; Escherichia coli / genetics; Haplotypes; Immunohistochemistry; Molecular Sequence Data; Mucoproteins / genetics; Mucoproteins / immunology; Mucoproteins / metabolism; Pinus / genetics; Pinus / metabolism; Pinus taeda; Plant Proteins; Plant Structures / growth & development; Plant Structures / metabolism; Recombinant Proteins / genetics; Recombinant Proteins / isolation & purification; Recombinant Proteins / metabolism; Sequence Alignment; Sequence Analysis, DNA; Sequence Homology, Amino Acid
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Analysis of lignin produced by cinnamyl alcohol dehydrogenase-deficient Pinus taeda cultured cells

PLANT PHYSIOLOGY AND BIOCHEMISTRY, 41(5), 439–445.

By: C. Stasolla*, J. Scott, U. Egertsdotter, J. Kadla*, . D O'Malley, R. Sederoff*, L. Zyl

author keywords: cinnamyl alcohol dehydrogenase; cultured cells; dihydroconiferyl alcohol; lignin; Pinus taeda; xylem
Source: Web Of Science
Added: August 6, 2018

2003 journal article

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

Proceedings of the National Academy of Sciences, 100(12), 7383–7388.

By: M. Kirst n, A. Johnson n, C. Baucom n, E. Ulrich n, K. Hubbard n, R. Staggs n, C. Paule n, E. Retzel n, R. Whetten n, R. Sederoff n

MeSH headings : 3' Untranslated Regions; 5' Untranslated Regions; Arabidopsis / genetics; Conserved Sequence; Contig Mapping; DNA, Complementary / genetics; DNA, Plant / genetics; Evolution, Molecular; Expressed Sequence Tags; Gene Expression; Genes, Plant; Genome, Plant; Molecular Sequence Data; Pinus / genetics; Pinus taeda; Retroelements / genetics; Sequence Homology, Nucleic Acid; Species Specificity; Wood
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2003 journal article

Characterisation of PtMYB1, an R2R3-MYB from pine xylem

Plant Molecular Biology, 53(4), 597–608.

By: A. Patzlaff*, L. Newman*, C. Dubos*, R. Whetten n, C. Smith*, S. McInnis*, M. Bevan*, R. Sederoff n, M. Campbell*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧
author keywords: MYB; phenylalanine ammonia-lyase; phenylpropanoid; pine; xylem
MeSH headings : Adenosine Triphosphate / genetics; Adenosine Triphosphate / metabolism; Base Sequence; Binding Sites / genetics; Cloning, Molecular; Cytidine Triphosphate / genetics; Cytidine Triphosphate / metabolism; DNA, Complementary / chemistry; DNA, Complementary / genetics; Electrophoretic Mobility Shift Assay; Molecular Sequence Data; Oligonucleotides / genetics; Oligonucleotides / metabolism; Phylogeny; Pinus / genetics; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Structures / genetics; Protein Binding; Proto-Oncogene Proteins c-myb / genetics; Proto-Oncogene Proteins c-myb / metabolism; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Saccharomyces cerevisiae / genetics; Sequence Analysis, DNA; Transcription, Genetic / genetics
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2003 journal article

Characterisation of a pine MYB that regulates lignification

The Plant Journal, 36(6), 743–754.

By: A. Patzlaff*, S. McInnis*, A. Courtenay*, C. Surman*, L. Newman*, C. Smith*, M. Bevan*, S. Mansfield* ...

co-author countries: Canada 🇨🇦 United Kingdom of Great Britain and Northern Ireland 🇬🇧
author keywords: lignin; MYB; transcription; wood; pine; phenylpropanoid
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Base Sequence; DNA, Complementary / genetics; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / genetics; Gene Expression Regulation, Plant / genetics; Gene Library; Genes, myb / genetics; Lignin / genetics; Molecular Sequence Data; Pinus / genetics; Plant Proteins / chemistry; Plant Proteins / genetics; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; RNA, Plant / genetics; RNA, Plant / isolation & purification; Sequence Alignment; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; Tobacco / metabolism; Transcription Factors / chemistry; Transcription Factors / genetics
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2003 journal article

Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F1 hybrid based on a double pseudo-backcross mapping approach

Theoretical and Applied Genetics, 107(6), 1028–1042.

By: A. Myburg n, A. Griffin*, R. Sederoff n & R. Whetten n

co-author countries: Australia 🇦🇺
author keywords: comparative mapping; AFLP; Eucalyptus; transmission ratio distortion; genome synteny
MeSH headings : Chromosome Mapping; Chromosomes, Plant; Eucalyptus / genetics; Genetic Linkage; Genome, Plant; Inbreeding; Polymorphism, Genetic
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2003 article

Genome studies and molecular genetics - The rice genome and comparative genomics of higher plants - Editorial overview

Sasaki, T., & Sederoff, R. R. (2003, April). CURRENT OPINION IN PLANT BIOLOGY, Vol. 6, pp. 97–100.

By: T. Sasaki* & R. Sederoff n

co-author countries: Japan 🇯🇵
Source: Web Of Science
Added: August 6, 2018

2003 journal article

NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins

ORGANIC & BIOMOLECULAR CHEMISTRY, 1(2), 268–281.

By: H. Kim*, J. Ralph*, F. Lu*, S. Ralph*, A. Boudet*, J. MacKay*, R. Sederoff n, T. Ito* ...

co-author countries: Canada 🇨🇦 France 🇫🇷 Japan 🇯🇵
MeSH headings : Alcohol Oxidoreductases / deficiency; Alcohol Oxidoreductases / genetics; Benzaldehydes / chemistry; Benzaldehydes / metabolism; Carbon Isotopes; Cinnamates / chemistry; Cinnamates / metabolism; Dimerization; Down-Regulation; Lignin / biosynthesis; Lignin / chemistry; Nuclear Magnetic Resonance, Biomolecular; Pinus / enzymology; Pinus / genetics; Pinus / metabolism; Plants, Genetically Modified / enzymology; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Tobacco / enzymology; Tobacco / genetics; Tobacco / metabolism
Source: Web Of Science
Added: August 6, 2018

2003 journal article

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine

Plant Physiology, 133(4), 1702–1716.

By: J. Watkinson, A. Sioson, C. Vasquez-Robinet, M. Shukla, D. Kumar, M. Ellis, L. Heath, N. Ramakrishnan ...

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

The effects of polyethylene glycol on gene expression of developing white spruce somatic embryos

PLANT PHYSIOLOGY, 131(1), 49–60.

By: C. Stasolla n, L. Zyl n, U. Egertsdotter, D. Craig n, W. Liu n & R. Sederoff n

MeSH headings : Arabidopsis Proteins / genetics; COP9 Signalosome Complex; Carbohydrate Metabolism; Cell Differentiation; Culture Techniques; DNA, Complementary / genetics; DNA, Complementary / metabolism; Disasters; GTP-Binding Proteins; Gene Expression Regulation, Developmental / drug effects; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Plant / drug effects; Gene Expression Regulation, Plant / genetics; Intracellular Signaling Peptides and Proteins; Meristem / genetics; Meristem / growth & development; Nitrogen / metabolism; Oligonucleotide Array Sequence Analysis / methods; Oxidative Stress; Picea / drug effects; Picea / genetics; Picea / growth & development; Pinus / genetics; Plant Roots / genetics; Plant Roots / growth & development; Plant Shoots / genetics; Plant Shoots / growth & development; Polyethylene Glycols / pharmacology; Proteins / genetics; RNA, Plant / genetics; Repressor Proteins; Seeds / drug effects; Seeds / genetics; Seeds / growth & development
Source: Web Of Science
Added: August 6, 2018

2003 journal article

Transcript profiles of stress-related genes in developing white spruce (Picea glauca) somatic embryos cultured with polyethylene glycol

PLANT SCIENCE, 165(4), 719–729.

By: C. Stasolla*, L. Zyl, U. Egertsdotter, D. Craig, W. Liu & R. Sederoff*

author keywords: microarray; polyethylene glycol; transcript levels; white spruce
Source: Web Of Science
Added: August 6, 2018

2003 journal article

Up, down and up again is a signature global gene expression pattern at the beginning of gymnosperm embryogenesis

GENE EXPRESSION PATTERNS, 3(1), 83–91.

By: L. Zyl n, P. Bozhkov*, D. Clapham*, R. Sederoff n & S. Arnold*

co-author countries: Sweden 🇸🇪
author keywords: Picea abies; embryogenesis; cDNA arrays; gene expression profile; transcriptionally repressive state; developmentally regulated genes; arrested cell line
MeSH headings : Gene Expression / physiology; Gene Expression Profiling; Gene Expression Regulation, Developmental; Phylogeny; Picea / embryology; Picea / metabolism
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species

THEORETICAL AND APPLIED GENETICS, 105(2-3), 474–478.

By: C. Marques*, R. Brondani*, D. Grattapaglia* & R. Sederoff n

co-author countries: Brazil 🇧🇷 Portugal 🇵🇹
author keywords: SSR; mapping; QTLs; eucalyptus; synteny
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Heterologous array analysis in Pinaceae: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P-taeda, P-sylvestris or Picea abies

COMPARATIVE AND FUNCTIONAL GENOMICS, 3(4), 306–318.

By: L. Zyl n, S. Arnold*, P. Bozhkov*, Y. Chen*, U. Egertsdotter, J. MacKay, R. Sederoff n, J. Shen n, L. Zelena, D. Clapham*

co-author countries: Sweden 🇸🇪
author keywords: cDNA array; conifer; normalization; functional genomics; pine; spruce
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system

COMPARATIVE AND FUNCTIONAL GENOMICS, 3(3), 226–243.

By: L. Heath*, N. Ramakrishnan*, R. Sederoff n, R. Whetten n, B. Chevone*, C. Struble*, V. Jouenne*, D. Chen* ...

author keywords: microarrays; data mining; experiment management systems; inductive logic programming; reactive oxygen species; drought stress; Pinus taeda; microarray design
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 article

Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR

Ralph, J., Lapierre, C., Marita, J. M., Kim, H., Lu, F. C., Hatfield, R. D., … Boerjan, W. (2001, July). PHYTOCHEMISTRY, Vol. 57, pp. 993–1003.

By: J. Ralph*, C. Lapierre*, J. Marita*, H. Kim*, F. Lu*, R. Hatfield*, S. Ralph*, C. Chapple* ...

co-author countries: Belgium 🇧🇪 France 🇫🇷
author keywords: NMR; transgenic; mutant; O-methyltransferase; monolignol; coniferyl aldehyde; sinapyl aldehyde; 5-hydroxyconiferyl alcohol
MeSH headings : Alcohol Oxidoreductases / deficiency; Alcohol Oxidoreductases / metabolism; Cycadopsida / enzymology; Cycadopsida / metabolism; Lignin / biosynthesis; Lignin / chemistry; Methyltransferases / deficiency; Methyltransferases / metabolism; Models, Chemical; Molecular Structure; Nuclear Magnetic Resonance, Biomolecular / methods; Plants, Toxic; Tobacco / enzymology; Tobacco / metabolism
Source: Web Of Science
Added: August 6, 2018

2001 journal article

Functional genomics and cell wall biosynthesis in loblolly pine

Plant Molecular Biology, 47(1/2), 275–291.

By: R. Whetten n, Y. Sun n, Y. Zhang n & R. Sederoff n

author keywords: EST sequencing; microarrays; Pinus taeda; xylogenesis; wood formation
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2001 journal article

Genotypic control of high-frequency adventitious shoot regeneration via somatic organogenesis in loblolly pine

Plant Science, 161(2), 267–272.

By: W. Tang n, R. Whetten n & R. Sederoff n

author keywords: Pinus taedu L.; organogenesis; adventitious shoot regeneration; callus induction frequency; differentiation frequency
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2001 personal communication

Grafting for transgene containment

Lev-Yadun, S., & Sederoff, R. (2001, December).

By: S. Lev-Yadun* & R. Sederoff n

co-author countries: Israel 🇮🇱
MeSH headings : Biotechnology / methods; Biotechnology / trends; Containment of Biohazards / methods; Genetic Engineering / methods; Plants, Genetically Modified; Transgenes
Source: Web Of Science
Added: August 6, 2018

2001 journal article

High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer

BIOTECHNIQUES, 30(2), 348-+.

By: A. Myburg n, D. Remington n, . DM O'Malley n, R. Sederoff n & R. Whetten n

MeSH headings : Electrophoresis; Genetic Markers; Genotype; Infrared Rays; Polymerase Chain Reaction; Polymorphism, Genetic; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Molecular Cloning and Expression of Eight Laccase cDNAs in Loblolly Pine (Pinus taeda)*

Journal of Plant Research, 114(2), 147–155.

By: Y. Sato*, B. Wuli n, R. Sederoff n & R. Whetten n

co-author countries: Japan 🇯🇵
author keywords: laccase; lignin synthesis; loblolly pine (Pinus taeda L); xylem differentiation
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2001 personal communication

Moribund funding in agricultural research

By: G. Robertson*, P. Barry*, F. Busta*, R. Collier*, N. Keen*, R. Sederoff n, W. Simpkins*, F. Stormshak*, T. Urban*

MeSH headings : Agriculture; Research; Research Support as Topic; United States; United States Department of Agriculture / economics
Source: NC State University Libraries
Added: August 6, 2018

2001 journal article

Pulping and bleaching of CAD-deficient wood

JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 21(1), 1–17.

By: D. Dimmel, J. MacKay*, E. Althen, C. Parks & R. Sederoff n

Source: Web Of Science
Added: August 6, 2018

2001 journal article

Regeneration of transgenic loblolly pine (Pinus taeda L.) from zygotic embryos transformed with Agrobacterium tumefaciens

PLANTA, 213(6), 981–989.

By: W. Tang n, R. Sederoff n & R. Whetten n

author keywords: genetic transformation; beta-glucuronidase gene; Pinus (transformation); plant DNA/T-DNA junction analysis; transgenic pine; zygotic embryo
MeSH headings : Agrobacterium tumefaciens / genetics; Base Sequence; Blotting, Southern; Culture Techniques; DNA, Bacterial / analysis; DNA, Bacterial / genetics; DNA, Plant / analysis; DNA, Plant / genetics; Glucuronidase / genetics; Glucuronidase / metabolism; Pinus / genetics; Pinus / physiology; Pinus taeda; Plant Shoots / genetics; Plant Shoots / physiology; Plant Structures / genetics; Plant Structures / physiology; Plants, Genetically Modified; Polymerase Chain Reaction; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Regeneration / physiology; Seeds / genetics; Seeds / physiology; Transformation, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees

Tree Physiology, 20(7), 457–466.

By: Y. Zhang, R. Sederoff & I. Allona

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Lignin structure in a mutant pine deficient in cinnamyl alcohol dehydrogenase

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 48(6), 2326–2331.

By: C. Lapierre n, B. Pollet n, J. MacKay n & R. Sederoff n

author keywords: lignification; altered lignin structure; pine (Pinus taeda L.); thioacidolysis; dihydroconiferyl alcohol
MeSH headings : Alcohol Oxidoreductases / genetics; Cycadopsida / enzymology; Cycadopsida / genetics; Lignin / biosynthesis; Lignin / chemistry; Mutation; Trees / enzymology; Trees / genetics
Source: Web Of Science
Added: August 6, 2018

2000 patent

Methods for within family selection in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

By: D. O'Malley, R. Sederoff & D. Grattapaglia

Source: NC State University Libraries
Added: August 6, 2018

2000 review

Pines as model gymnosperms to study evolution, wood formation, and perennial growth

[Review of ]. JOURNAL OF PLANT GROWTH REGULATION, 19(3), 290–305.

By: S. Lev-Yadun* & R. Sederoff n

co-author countries: Israel 🇮🇱
author keywords: forest biotechnology; genomics; gymnosperms; Pinus; plant longevity; plant reproduction; wood formation; wood structure; xylogenesis
Source: Web Of Science
Added: August 6, 2018

2000 journal article

Tree genomes: What will we understand about them by the year 2020 and how might we use that knowledge?

Forest Genetics and Sustainability, 23.

By: R. Sederoff*

Source: NC State University Libraries
Added: August 6, 2018

1999 article

Building better trees with antisense

Sederoff, R. (1999, August). NATURE BIOTECHNOLOGY, Vol. 17, pp. 750–751.

By: R. Sederoff n

MeSH headings : Cellulose / biosynthesis; Genetic Engineering; Lignin / genetics; Oligonucleotides, Antisense / genetics; Plants, Genetically Modified / genetics; Plants, Genetically Modified / growth & development; Trees / genetics; Trees / growth & development
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E-globulus

THEORETICAL AND APPLIED GENETICS, 99(6), 936–946.

By: C. Marques, J. Vasquez-Kool*, V. Carocha*, J. Ferreira*, . DM O'Malley, B. Liu*, R. Sederoff*

co-author countries: Portugal 🇵🇹
author keywords: AFLP; pseudo-testcross; Eucalyptus; QTL; vegetative propagation
Source: Web Of Science
Added: August 6, 2018

1999 journal article

High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda)

Plant Molecular Biology, 39(3), 407–416.

By: A. Wenck n, M. Quinn n, R. Whetten n, G. Pullman & R. Sederoff n

MeSH headings : Acetophenones / pharmacology; Agrobacterium tumefaciens / genetics; Agrobacterium tumefaciens / growth & development; Agrobacterium tumefaciens / pathogenicity; Base Sequence; Culture Techniques; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Dose-Response Relationship, Drug; Molecular Sequence Data; Pinus taeda; Transformation, Genetic / drug effects; Virulence / genetics
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1999 patent

Methods for within family selection of disease resistance in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

By: H. Amerson, P. Wilcox, R. Sederoff, E. Kuhlman, D. O'Malley & D. Grattapaglia

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Modified lignin and delignification with a CAD-deficient loblolly pine

HOLZFORSCHUNG, 53(4), 403–410.

By: J. MacKay*, T. Presnell, H. Jameel*, H. Taneda, . D O'Malley & R. Sederoff*

author keywords: pine; genetic modification; lignin mutant; delignification; soda pulping; coniferaldehyde
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Surfing on AG Biotech into genomics

Molecular Breeding, 5(1999), 485–491.

By: R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1999 review

Unexpected variation in lignin

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 2(2), 145–152.

By: R. Sederoff n, J. MacKay*, J. Ralph* & R. Hatfield*

MeSH headings : Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Lignin / biosynthesis; Lignin / chemistry; Mutation; Phenols / metabolism; Plants, Genetically Modified; Trees / genetics; Trees / metabolism
Source: Web Of Science
Added: August 6, 2018

1998 journal article

AFLP genetic maps of Eucalyptus globulus and E-tereticornis

THEORETICAL AND APPLIED GENETICS, 96(6-7), 727–737.

By: C. Marques, J. Araujo*, J. Ferreira*, R. Whetten*, . DM O'Malley, B. Liu*, R. Sederoff*

co-author countries: Portugal 🇵🇹
author keywords: genetic map; linkage; Eucalyptus; AFLP marker
Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 journal article

Analysis of xylem formation in pine by cDNA sequencing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(16), 9693–9698.

By: I. Allona n, M. Quinn n, E. Shoop n, K. Swope n, S. St Cyr n, J. Carlis n, J. Riedl n, E. Retzel n ...

MeSH headings : DNA, Complementary; Gene Expression Regulation, Plant; Molecular Sequence Data; Trees / genetics; Trees / metabolism; Wood
Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 patent

Method of altering lignin in trees

Washington, DC: U.S. Patent and Trademark Office.

By: J. MacKay, D. O'Malley, R. Whetten & R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1998 journal article

NMR applications in cell wall research

By: J. Ralph, R. Hatfield, L. Fanchuang, J. Marita, R. Ede, S. Junpeng, S. Quideau, R. Helm ...

Source: NC State University Libraries
Added: August 6, 2018

1998 review

Recent advances in understanding lignin biosynthesis

[Review of ]. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY, 49(1998), 585–609.

By: R. Whetten n, J. MacKay n & R. Sederoff n

author keywords: monolignol biosynthesis; lignin composition; pulp manufacturing; forage quality; metabolic plasticity
Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 journal article

The promise of forest biotechnology

Paper Age, (1998 Aug.), 13–18.

By: R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1997 journal article

Abnormal lignin in a loblolly pine mutant

SCIENCE, 277(5323), 235–239.

By: J. Ralph n, J. MacKay n, R. Hatfield n, D. OMalley n, R. Whetten n & R. Sederoff n

MeSH headings : Alcohol Oxidoreductases / deficiency; Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Aldehydes / analysis; Lignin / biosynthesis; Lignin / chemistry; Magnetic Resonance Spectroscopy; Mutation; Oxidation-Reduction; Phenols / analysis; Phenols / metabolism; Pinus taeda; Plant Proteins / genetics; Plant Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

1997 article

Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase

MacKay, J. J., OMalley, D. M., Presnell, T., Booker, F. L., Campbell, M. M., Whetten, R. W., & Sederoff, R. R. (1997, July 22). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 94, pp. 8255–8260.

By: J. MacKay n, D. OMalley n, T. Presnell n, F. Booker n, M. Campbell n, R. Whetten n, R. Sederoff n

MeSH headings : Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Chromosome Mapping; Gene Expression Regulation, Enzymologic / genetics; Gene Expression Regulation, Plant / genetics; Homozygote; Lignin / metabolism; Mutation; Phenotype; Substrate Specificity; Trees / enzymology; Trees / genetics; Trees / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

1996 conference paper

Molecular markers, forest genetics, and tree breeding

In J. P. Gustafson & R. B. Flavell (Eds.), Genomes of Plants and Animals: 21 Stadler Genetics Symposium (pp. 87–102).

By: D. O'Malley n, D. Grattapaglia*, J. Chaparro n, P. Wilcox n, H. Amerson n, B. Liu n, R. Whetten n, S. McKeand n ...

Ed(s): J. Gustafson & R. Flavell

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1995 review

LIGNIN BIOSYNTHESIS

[Review of ]. PLANT CELL, 7(7), 1001–1013.

By: R. Whetten* & R. Sederoff*

Sources: Web Of Science, ORCID
Added: August 6, 2018

1994 journal article

Genetic regulation of lignin biosynthesis and the potential modification of wood by genetic engineering in loblolly pine

Genetic Engineering of Plant Secondary Metabolism, 313.

Ed(s): G. B. E. Ellis & H. Stafford

Source: NC State University Libraries
Added: August 6, 2018

1994 journal article

Genetic-linkage maps of eucalyptus-grandis and eucalyptus-urophylla using a pseudo-testcross - mapping strategy and rapd markers

Genetics, 137(4), 1121–1137.

By: D. Grattapaglia & R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1993 conference paper

Application of genetic markers to tree breeding

Proceedings of the 22nd Southern Forest Tree Improvement Conference, 452–463.

By: D. Grattapaglia, J. Chaparro, P. Wilcox, S. McCord, B. Crane, H. Amerson, D. Werner, B. Liu ...

Source: NC State University Libraries
Added: August 6, 2018

1992 patent

Ballistic transformation of conifers

Washington, DC: U.S. Patent and Trademark Office.

By: A. Stomp, A. Weissinger & R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1992 conference paper

Mapping in woody plants with RAPD markers: application to breeding in forestry and horticulture

Proceedings of the Symposium on the Applications of RAPD Technology to Plant Breeding, 37–40. Joint Plant Breeding Symposium Series, Crop Science Society of America, American Society for Horticultural Science, and American Genetics Association.

By: D. Grattapaglia, J. Chaparro, P. Wilcox, S. McCord, D. Werner, H. Amerson, S. McKeand, F. Bridgwater ...

Source: NC State University Libraries
Added: August 6, 2018

1989 patent

Method for transforming pine

Washington, DC: U.S. Patent and Trademark Office.

By: R. Sederoff, A. Stomp, L. Moore & S. Chilton

Source: NC State University Libraries
Added: August 6, 2018

1981 journal article

IMPROVED ESTIMATION OF DNA FRAGMENT LENGTHS FROM AGAROSE GELS

ANALYTICAL BIOCHEMISTRY, 115(1), 113–122.

By: H. Schaffer n & R. Sederoff n

MeSH headings : Bacteriophage lambda; Base Composition; Chromatography, Gel / methods; DNA / isolation & purification; DNA Restriction Enzymes; DNA, Viral / isolation & purification; Mathematics; Molecular Weight; Sepharose
Source: Web Of Science
Added: August 6, 2018

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.