Ron Sederoff

Chen, S., Yu, Y., Wang, X., Wang, S., Zhang, T., Zhou, Y., … Chen, S. (2023, February 27). Chromosome-level genome assembly of a triploid poplar Populus alba 'Berolinensis'. MOLECULAR ECOLOGY RESOURCES. https://doi.org/10.1111/1755-0998.13770

Sulis, D. B., Jiang, X., Yang, C., Marques, B. M., Matthews, M. L., Miller, Z., … Wang, J. P. (2023). Multiplex CRISPR editing of wood for sustainable fiber production. SCIENCE, 381(6654), 216-+. https://doi.org/10.1126/science.add4514

Peng, X., Tong, B., Lee, J., Wang, K., Yu, X., Huang, X., … Li, Q. (2023). Overexpression of a gibberellin 20-oxidase gene in poplar xylem led to an increase in the size of nanocellulose fibrils and improved paper properties. CARBOHYDRATE POLYMERS, 314. https://doi.org/10.1016/j.carbpol.2023.120959

Li, X., Cai, K., Han, Z., Zhang, S., Sun, A., Xie, Y., … Zhao, X. (2022). Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.850054

Zhao, Y., Guo, Q., Cao, S., Tian, Y., Han, K., Sun, Y., … Li, Y. (2022). Genome-wide identification of the AlkB homologs gene family, PagALKBH9B and PagALKBH10B regulated salt stress response in Populus. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.994154

Li, X., Cai, K., Zhao, Q., Li, H., Wang, X., Tigabu, M., … Zhao, X. (2022). Morphological and Comparative Transcriptome Analysis of Three Species of Five-Needle Pines: Insights Into Phenotypic Evolution and Phylogeny. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.795631

Li, X., Cai, K., Zhang, Q., Pei, X., Chen, S., Jiang, L., … Zhao, X. (2022). The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis. GIGASCIENCE, 11. https://doi.org/10.1093/gigascience/giac057

Wang, H., Lu, Y., Zhang, T., Liu, Z., Cao, L., Chang, Q., … Zheng, Z. (2022, December 10). The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion. PLANT PHYSIOLOGY, Vol. 12. https://doi.org/10.1093/plphys/kiac571

Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.-Y., Zhang, X., … Li, Q. (2022, May 9). The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence. NATURE PLANTS. https://doi.org/10.1038/s41477-022-01146-6

Tang, X., Wang, C., Chai, G., Wang, D., Xu, H., Liu, Y., … Zhou, G. (2022, June 15). Ubiquitinated DA1 negatively regulates vascular cambium activity through modulating the stability of WOX4 in Populus. PLANT CELL. https://doi.org/10.1093/plcell/koac178

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2021). A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182. https://doi.org/10.1016/j.csbj.2020.11.046

Li, Y., Li, X., Zhao, M.-H., Pang, Z.-Y., Wei, J.-T., Tigabu, M., … Zhao, X.-Y. (2021). [Review of An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use]. HORTICULTURAE, 7(8). https://doi.org/10.3390/horticulturae7080252

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAl5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.695223

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021, September 9). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021). FRONTIERS IN PLANT SCIENCE, Vol. 12. https://doi.org/10.3389/fpls.2021.761291

Lin, C.-Y., Sun, Y., Song, J., Chen, H.-C., Shi, R., Yang, C., … Chiang, V. L. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.727932

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). Epigenetic modification associated with climate regulates betulin biosynthesis in birch. JOURNAL OF FORESTRY RESEARCH, Vol. 12. https://doi.org/10.1007/s11676-021-01424-7

Yan, H., Pei, X., Zhang, H., Li, X., Zhang, X., Zhao, M., … Zhao, X. (2021). [Review of MYB-Mediated Regulation of Anthocyanin Biosynthesis]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6). https://doi.org/10.3390/ijms22063103

Li, X., Li, Y., Zhao, M., Hu, Y., Meng, F., Song, X., … Zhao, X. (2021). Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19). https://doi.org/10.3390/ijms221910697

Liu, C., Li, K., Wang, M., Fan, E., Yang, C., Wang, J., … Qu, G. (2021). Qu-2, a robust poplar suspension cell line for molecular biology. JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740. https://doi.org/10.1007/s11676-020-01266-9

Li, H., Dai, X., Huang, X., Xu, M., Wang, Q., Yan, X., … Li, Q. (2021, October 4). Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus. JOURNAL OF INTEGRATIVE PLANT BIOLOGY. https://doi.org/10.1111/jipb.13159

Niu, B., Wang, W., Yuan, Z., Sederoff, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). [Review of Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease]. FRONTIERS IN MICROBIOLOGY, 11. https://doi.org/10.3389/fmicb.2020.585404

Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2019). CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. NEW PHYTOLOGIST, 222(1), 244–260. https://doi.org/10.1111/nph.15505

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). Editorial: Forest Genomics and Biotechnology. FRONTIERS IN PLANT SCIENCE, Vol. 10. https://doi.org/10.3389/fpls.2019.01187

Wang, J. P., Liu, B., Sun, Y., Chiang, V. L., & Sederoff, R. R. (2019). [Review of Enzyme-Enzyme Interactions in Monolignol Biosynthesis]. FRONTIERS IN PLANT SCIENCE, 9. https://doi.org/10.3389/fpls.2018.01942

Naik, P., Wang, J. P., Sederoff, R., Chiang, V., Williams, C., & Ducoste, J. J. (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLOS ONE, 13(3), e0193896. https://doi.org/10.1371/journal.pone.0193896

Wang, J. P., Matthews, M. L., Williams, C. M., Shi, R., Yang, C., Tunlaya-Anukit, S., … Chiang, V. L. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nature Communications, 9(1), 1579. https://doi.org/10.1038/s41467-018-03863-z

Lin, Y.-C. J., Chen, H., Li, Q., Li, W., Wang, J. P., Shi, R., … Chiang, V. L. (2017). Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729. https://doi.org/10.1073/pnas.1714422114

Shi, R., Wang, J. P., Lin, Y.-C., Li, Q., Sun, Y.-H., Chen, H., … Chiang, V. L. (2017). Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. PLANTA, 245(5), 927–938. https://doi.org/10.1007/s00425-016-2640-1

Lin, C.-Y., Li, Q., Tunlaya-Anukit, S., Shi, R., Sun, Y.-H., Wang, J. P., … Chiang, V. L. (2016). A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa. Tree Genetics & Genomes, 12(2). https://doi.org/10.1007/s11295-016-0978-y

Lin, C.-Y., Wang, J. P., Li, Q., Chen, H.-C., Liu, J., Loziuk, P., … Chiang, V. L. (2015). 4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa. MOLECULAR PLANT, 8(1), 176–187. https://doi.org/10.1016/j.molp.2014.12.003

Loziuk, P. L., Parker, J., Li, W., Lin, C.-Y., Wang, J. P., Li, Q., … Muddiman, D. C. (2015). Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa. JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168. https://doi.org/10.1021/acs.jproteome.5b00233

Wang, J. P., Chuang, L., Loziuk, P. L., Chen, H., Lin, Y.-C., Shi, R., … Chiang, V. L. (2015). Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis. Proceedings of the National Academy of Sciences, 112(27), 8481–8486. https://doi.org/10.1073/pnas.1510473112

Li, Q., Yeh, T.-F., Yang, C., Song, J., Chen, Z.-Z., Sederoff, R. R., & Chiang, V. L. (2015). Populus trichocarpa. AGROBACTERIUM PROTOCOLS, VOLUME 2, THIRD EDITION, Vol. 1224, pp. 357–363. https://doi.org/10.1007/978-1-4939-1658-0_28

Li, W., Lin, Y.-C., Li, Q., Shi, R., Lin, C.-Y., Chen, H., … Chiang, V. L. (2014). A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue. NATURE PROTOCOLS, 9(9), 2180–2193. https://doi.org/10.1038/nprot.2014.146

Lin, Y.-C., Li, W., Chen, H., Li, Q., Sun, Y.-H., Shi, R., … Chiang, V. L. (2014). A simple improved-throughput xylem protoplast system for studying wood formation. NATURE PROTOCOLS, 9(9), 2194–2205. https://doi.org/10.1038/nprot.2014.147

Neale, D. B., Wegrzyn, J. L., Stevens, K. A., Zimin, A. V., Puiu, D., Crepeau, M. W., … Langley, C. H. (2014). Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. GENOME BIOLOGY, 15(3). https://doi.org/10.1186/gb-2014-15-3-r59

Loziuk, P. L., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2014). Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry. ANALYST, 139(21), 5439–5450. https://doi.org/10.1039/c4an00567h

Chen, H.-C., Song, J., Wang, J. P., Lin, Y.-C., Ducoste, J., Shuford, C. M., … Chiang, V. L. (2014). Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling. The Plant Cell, 26(3), 876–893. https://doi.org/10.1105/tpc.113.119685

Sederoff, R. (2013, May 30). GENOMICS A spruce sequence. NATURE, Vol. 497, pp. 569–570. https://doi.org/10.1038/nature12250

Liu, E., Peng, S., Li, Q., Sun, Y.-H., Chiang, V. L., & Sederoff, R. R. (2013). High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer. PLANT BIOTECHNOLOGY, 30(2), 191–198. https://doi.org/10.5511/plantbiotechnology.13.0213a

Chen, H.-C., Song, J., Williams, C. M., Shuford, C. M., Liu, J., Wang, J. P., … Chiang, V. L. (2013). Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes. PLANT PHYSIOLOGY, 161(3), 1501–1516. https://doi.org/10.1104/pp.112.210971

Lu, S., Li, Q., Wei, H., Chang, M.-J., Tunlaya-Anukit, S., Kim, H., … Chiang, V. L. (2013). Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa. Proceedings of the National Academy of Sciences, 110(26), 10848–10853. https://doi.org/10.1073/pnas.1308936110

Shi, R., Shuford, C. M., Wang, J. P., Sun, Y. H., Yang, Z. C., Chen, H. C., … Chiang, V. L. (2013). Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta, 238(3), 487–497. https://doi.org/10.1007/s00425-013-1905-1

Lin, Y.-C., Li, W., Sun, Y.-H., Kumari, S., Wei, H., Li, Q., … Chiang, V. L. (2013). SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa. PLANT CELL, 25(11), 4324–4341. https://doi.org/10.1105/tpc.113.117697

Albert, V. A., Barbazuk, W. B., dePamphilis, C. W., Der, J. P., Leebens-Mack, J., Ma, H., … Tomsho, L. (2013). The Amborella Genome and the Evolution of Flowering Plants. Science, 342(6165), 1456–1457. https://doi.org/10.1126/science.1241089

Loziuk, P. L., Wang, J., Li, Q., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2013). Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments. JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829. https://doi.org/10.1021/pr4008442

Liu, J., Shi, R., Li, Q., Sederoff, R. R., & Chiang, V. L. (2012). A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities. PLANTA, 236(3), 879–885. https://doi.org/10.1007/s00425-012-1688-9

Kubisiak, T. L., Nelson, C. D., Staton, M. E., Zhebentyayeva, T., Smith, C., Olukolu, B. A., … Sederoff, R. R. (2012). A transcriptome-based genetic map of Chinese chestnut (Castanea mollissima) and identification of regions of segmental homology with peach (Prunus persica). Tree Genetics & Genomes, 9(2), 557–571. https://doi.org/10.1007/s11295-012-0579-3

Shuford, C. M., Li, Q., Sun, Y.-H., Chen, H.-C., Wang, J., Shi, R., … Muddiman, D. C. (2012). Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry. Journal of Proteome Research, 11(6), 3390–3404. https://doi.org/10.1021/pr300205a

Wang, J. P., Shuford, C. M., Li, Q., Song, J., Lin, Y.-C., Sun, Y.-H., … Chiang, V. L. (2012). Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis. PLANTA, 236(3), 795–808. https://doi.org/10.1007/s00425-012-1663-5

Sun, Y.-H., Shi, R., Zhang, X.-H., Chiang, V. L., & Sederoff, R. R. (2012). MicroRNAs in trees. PLANT MOLECULAR BIOLOGY, 80(1), 37–53. https://doi.org/10.1007/s11103-011-9864-z

Li, Q., Lin, Y.-C., Sun, Y.-H., Song, J., Chen, H., Zhang, X.-H., … Chiang, V. L. (2012). Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704. https://doi.org/10.1073/pnas.1212977109

Chen, H.-C., Li, Q., Shuford, C. M., Liu, J., Muddiman, D. C., Sederoff, R. R., & Chiang, V. L. (2011). Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258. https://doi.org/10.1073/pnas.1116416109

Wyatt, S. E., Sederoff, R., Flaishman, M. A., & Lev-Yadun, S. (2010). Arabidopsis thaliana as a model for gelatinous fiber formation. RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, 57(3), 363–367. https://doi.org/10.1134/s1021443710030076

Kremer, A., Sederoff, R., & Wheeler, N. (2010). Genomics of forest and ecosystem health in the Fagaceae: meeting report. TREE GENETICS & GENOMES, 6(5), 815–820. https://doi.org/10.1007/s11295-010-0277-y

Novaes, E., Kirst, M., Chiang, V., Winter-Sederoff, H., & Sederoff, R. (2010). Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees. PLANT PHYSIOLOGY, 154(2), 555–561. https://doi.org/10.1104/pp.110.161281

Shi, R., Yang, C., Lu, S., Sederoff, R., & Chiang, V. L. (2010). Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa. PLANTA, 232(6), 1281–1288. https://doi.org/10.1007/s00425-010-1253-3

Shi, R., Sun, Y.-H., Li, Q., Heber, S., Sederoff, R., & Chiang, V. L. (2010). [Review of Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163. https://doi.org/10.1093/pcp/pcp175

Barakat, A., DiLoreto, D. S., Zhang, Y., Smith, C., Baier, K., Powell, W. A., … Carlson, J. E. (2009). Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC PLANT BIOLOGY, 9. https://doi.org/10.1186/1471-2229-9-51

Grattapaglia, D., Plomion, C., Kirst, M., & Sederoff, R. R. (2009). [Review of Genomics of growth traits in forest trees]. CURRENT OPINION IN PLANT BIOLOGY, 12(2), 148–156. https://doi.org/10.1016/j.pbi.2008.12.008

Wheeler, N., & Sederoff, R. (2009). Role of genomics in the potential restoration of the American chestnut. TREE GENETICS & GENOMES, 5(1), 181–187. https://doi.org/10.1007/s11295-008-0180-y

Adomas, A., Heller, G., Olson, A., Osborne, J., Karlsson, M., Nahalkova, J., … Asiegbu, F. O. (2008). Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus. TREE PHYSIOLOGY, 28(6), 885–897. https://doi.org/10.1093/treephys/28.6.885

Novaes, E., Drost, D. R., Farmerie, W. G., Pappas, G. J., Jr., Grattapaglia, D., Sederoff, R. R., & Kirst, M. (2008). High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC GENOMICS, 9. https://doi.org/10.1186/1471-2164-9-312

Heller, G., Adomas, A., Li, G. S., Osborne, J., Van Zyl, L., Sederoff, R., … Asiegbu, F. O. (2008). Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor. BMC Plant Biology, 8.

Sederoff, R. (2007, April). Regulatory science in forest biotechnology. TREE GENETICS & GENOMES, Vol. 3, pp. 71–74. https://doi.org/10.1007/s11295-006-0081-x

Mazur, M., Hope-Ross, K., Kadla, J. F., Sederoff, R., & Chang, H.-min. (2007). Synthesis of hydroxyphenylpropanoid beta-D-glucosides. JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 27(1), 1–8. https://doi.org/10.1080/02773810701282264

Adomas, A., Heller, G., Li, G., Olson, A., Chu, T.-M., Osborne, J., … Asiegbu, F. O. (2007). Trranscript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion. TREE PHYSIOLOGY, 27(10), 1441–1458. https://doi.org/10.1093/treephys/27.10.1441

Wadenback, J., Clapham, D. H., Craig, D., Sederoff, R., Peter, G. F., Von Arnold, S., & Egertsdotter, U. (2005). Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays. BMC Genomics, 6(61).

Kirst, M., Basten, C. J., Myburg, A. A., Zeng, Z. B., & Sederoff, R. R. (2005). Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid. GENETICS, 169(4), 2295–2303. https://doi.org/10.1534/genetics.104.039198

Morris, C. R., Goldfarb, B., Isik, F., Li, C. S., Chang, H.-M., Sederoff, R., & Kadla, J. F. (2005). Variation of a-cellulose content and related metabolites during wood formation in loblolly pine. 13th ISWFPC Proceedings, 13.

Marques, C. M., Carocha, V. J., Sa, A. R. P., Oliveira, M. R., Pires, A. M., Sederoff, R., & Borralho, N. M. G. (2005). Verification of QTL linked markers for propagation traits in Eucalyptus. TREE GENETICS & GENOMES, 1(3), 103–108. https://doi.org/10.1007/s11295-005-0013-1

Busov, V. B., Johannes, E., Whetten, R. W., Sederoff, R. R., Spiker, S. L., Lanz-Garcia, C., & Goldfarb, B. (2004). An auxin-inducible gene from loblolly pine ( Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta, 218(6), 916–927. https://doi.org/10.1007/s00425-003-1175-4

Kirst, M., Myburg, A. A., De Leon, J. P. G., Kirst, M. E., Scott, J., & Sederoff, R. (2004). Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus. PLANT PHYSIOLOGY, 135(4), 2368–2378. https://doi.org/10.1104/pp.103.037960

Egertsdotter, U., Zyl, L. M., MacKay, J., Peter, G., Kirst, M., Clark, C., … Sederoff, R. (2004). Gene Expression during Formation of Earlywood and Latewood in Loblolly Pine: Expression Profiles of 350 Genes. Plant Biology, 6(6), 654–663. https://doi.org/10.1055/s-2004-830383

Myburg, A. A., Vogl, C., Griffin, A. R., Sederoff, R. R., & Whetten, R. W. (2004). Genetics of Postzygotic Isolation in Eucalyptus: Whole-Genome Analysis of Barriers to Introgression in a Wide Interspecific Cross of Eucalyptus grandis and E. globulus. Genetics, 166(3), 1405–1418. https://doi.org/10.1534/genetics.166.3.1405

Morris, C. R., Scott, J. T., Chang, H. M., Sederoff, R. R., D O'Malley, & Kadla, J. F. (2004). Metabolic profiling: A new tool in the study of wood formation. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 52(6), 1427–1434. https://doi.org/10.1021/jf034688l

Brinker, M., Zyl, L., Liu, W. B., Craig, D., Sederoff, R. R., Clapham, D. H., & Arnold, S. (2004). Microarray analyses of gene expression during adventitious root development in Pinus contorta (1[w]). PLANT PHYSIOLOGY, 135(3), 1526–1539. https://doi.org/10.1104/pp.103.032235

Stasolla, C., Belmonte, M. F., Zyl, L., Craig, D. L., Liu, W. B., Yeung, E. C., & Sederoff, R. R. (2004). The effect of reduced glutathione on morphology and gene expression of white spruce (Picea glauca) somatic embryos. JOURNAL OF EXPERIMENTAL BOTANY, 55(397), 695–709. https://doi.org/10.1093/jxb/erh074

Stasolla, C., Bozhkov, P. V., Chu, T. M., Van Zyl, L., Egertsdotter, U., Suarez, M. F., … Sederoff, R. R. (2004). Variation an transcript abundance during somatic embryogenesis in gymnosperms. TREE PHYSIOLOGY, 24(10), 1073–1085. https://doi.org/10.1093/treephys/24.10.1073

Zhang, Y., Brown, G., Whetten, R., Loopstra, C. A., Neale, D., Kieliszewski, M. J., & Sederoff, R. R. (2003). An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. Plant Molecular Biology, 52(1), 91–102. https://doi.org/10.1023/A:1023978210001

Stasolla, C., Scott, J., Egertsdotter, U., Kadla, J., D O'Malley, Sederoff, R., & Zyl, L. (2003). Analysis of lignin produced by cinnamyl alcohol dehydrogenase-deficient Pinus taeda cultured cells. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 41(5), 439–445. https://doi.org/10.1016/S0981-9428(03)00051-2

Kirst, M., Johnson, A. F., Baucom, C., Ulrich, E., Hubbard, K., Staggs, R., … Sederoff, R. (2003). Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana. Proceedings of the National Academy of Sciences, 100(12), 7383–7388. https://doi.org/10.1073/pnas.1132171100

Patzlaff, A., Newman, L. J., Dubos, C., Whetten, R. W., Smith, C., McInnis, S., … Campbell, M. M. (2003). Characterisation of PtMYB1, an R2R3-MYB from pine xylem. Plant Molecular Biology, 53(4), 597–608. https://doi.org/10.1023/B:PLAN.0000019066.07933.d6

Patzlaff, A., McInnis, S., Courtenay, A., Surman, C., Newman, L. J., Smith, C., … Campbell, M. M. (2003). Characterisation of a pine MYB that regulates lignification. The Plant Journal, 36(6), 743–754. https://doi.org/10.1046/j.1365-313X.2003.01916.x

Myburg, A. A., Griffin, A. R., Sederoff, R. R., & Whetten, R. W. (2003). Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F1 hybrid based on a double pseudo-backcross mapping approach. Theoretical and Applied Genetics, 107(6), 1028–1042. https://doi.org/10.1007/s00122-003-1347-4

Sasaki, T., & Sederoff, R. R. (2003, April). Genome studies and molecular genetics - The rice genome and comparative genomics of higher plants - Editorial overview. CURRENT OPINION IN PLANT BIOLOGY, Vol. 6, pp. 97–100. https://doi.org/10.1016/S1369-5266(03)00018-9

Kim, H., Ralph, J., Lu, F. C., Ralph, S. A., Boudet, A. M., MacKay, J. J., … Higuchi, T. (2003). NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins. ORGANIC & BIOMOLECULAR CHEMISTRY, 1(2), 268–281. https://doi.org/10.1039/b209686b

Watkinson, J. I., Sioson, A. A., Vasquez-Robinet, C., Shukla, M., Kumar, D., Ellis, M., … Grene, R. (2003). Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiology, 133(4), 1702–1716. https://doi.org/10.1104/pp.103026914

Stasolla, C., Zyl, L., Egertsdotter, U., Craig, D., Liu, W. B., & Sederoff, R. R. (2003). The effects of polyethylene glycol on gene expression of developing white spruce somatic embryos. PLANT PHYSIOLOGY, 131(1), 49–60. https://doi.org/10.1104/pp.015214

Stasolla, C., Zyl, L., Egertsdotter, U., Craig, D., Liu, W. B., & Sederoff, R. R. (2003). Transcript profiles of stress-related genes in developing white spruce (Picea glauca) somatic embryos cultured with polyethylene glycol. PLANT SCIENCE, 165(4), 719–729. https://doi.org/10.1016/S0168-9452(03)00228-0

Zyl, L., Bozhkov, P. V., Clapham, D. H., Sederoff, R. R., & Arnold, S. (2003). Up, down and up again is a signature global gene expression pattern at the beginning of gymnosperm embryogenesis. GENE EXPRESSION PATTERNS, 3(1), 83–91. https://doi.org/10.1016/S1567-133X(02)00068-6

Marques, C. M., Brondani, R. P. V., Grattapaglia, D., & Sederoff, R. (2002). Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species. THEORETICAL AND APPLIED GENETICS, 105(2-3), 474–478. https://doi.org/10.1007/s00122-002-0899-z

Zyl, L., Arnold, S., Bozhkov, P., Chen, Y. Z., Egertsdotter, U., MacKay, J., … Clapham, D. H. (2002). Heterologous array analysis in Pinaceae: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P-taeda, P-sylvestris or Picea abies. COMPARATIVE AND FUNCTIONAL GENOMICS, 3(4), 306–318. https://doi.org/10.1002/cfg.199

Heath, L. S., Ramakrishnan, N., Sederoff, R. R., Whetten, R. W., Chevone, B. I., Struble, C. A., … al. (2002). Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system. COMPARATIVE AND FUNCTIONAL GENOMICS, 3(3), 226–243. https://doi.org/10.1002/cfg.169

Ralph, J., Lapierre, C., Marita, J. M., Kim, H., Lu, F. C., Hatfield, R. D., … Boerjan, W. (2001, July). Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR. PHYTOCHEMISTRY, Vol. 57, pp. 993–1003. https://doi.org/10.1016/S0031-9422(01)00109-1

Whetten, R., Sun, Y.-H., Zhang, Y., & Sederoff, R. (2001). Functional genomics and cell wall biosynthesis in loblolly pine. Plant Molecular Biology, 47(1/2), 275–291. https://doi.org/10.1023/A:1010652003395

Tang, W., Whetten, R., & Sederoff, R. (2001). Genotypic control of high-frequency adventitious shoot regeneration via somatic organogenesis in loblolly pine. Plant Science, 161(2), 267–272. https://doi.org/10.1016/S0168-9452(01)00394-6

Lev-Yadun, S., & Sederoff, R. (2001, December). Grafting for transgene containment. https://doi.org/10.1038/nbt1201-1104

Myburg, A. A., Remington, D. L., DM O'Malley, Sederoff, R. R., & Whetten, R. W. (2001). High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer. BIOTECHNIQUES, 30(2), 348-+. https://doi.org/10.2144/01302tt04

Sato, Y., Wuli, B., Sederoff, R., & Whetten, R. (2001). Molecular Cloning and Expression of Eight Laccase cDNAs in Loblolly Pine (Pinus taeda)*. Journal of Plant Research, 114(2), 147–155. https://doi.org/10.1007/PL00013978

Robertson, G. P., Barry, P. J., Busta, F. F., Collier, R. J., Keen, N. T., Sederoff, R. R., … Urban, T. N. (2001). Moribund funding in agricultural research. https://doi.org/10.1126/science.291.5511.2089c

Dimmel, D. R., MacKay, J. J., Althen, E. M., Parks, C., & Sederoff, R. R. (2001). Pulping and bleaching of CAD-deficient wood. JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 21(1), 1–17. https://doi.org/10.1081/WCT-100102651

Tang, W., Sederoff, R., & Whetten, R. (2001). Regeneration of transgenic loblolly pine (Pinus taeda L.) from zygotic embryos transformed with Agrobacterium tumefaciens. PLANTA, 213(6), 981–989. https://doi.org/10.1007/s004250100566

Zhang, Y., Sederoff, R. R., & Allona, I. (2000). Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees. Tree Physiology, 20(7), 457–466.

Lapierre, C., Pollet, B., MacKay, J. J., & Sederoff, R. R. (2000). Lignin structure in a mutant pine deficient in cinnamyl alcohol dehydrogenase. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 48(6), 2326–2331. https://doi.org/10.1021/jf991398p

O'Malley, D. M., Sederoff, R. R., & Grattapaglia, D. (2000). Methods for within family selection in woody perennials using genetic markers. Washington, DC: U.S. Patent and Trademark Office.

Lev-Yadun, S., & Sederoff, R. (2000). [Review of Pines as model gymnosperms to study evolution, wood formation, and perennial growth]. JOURNAL OF PLANT GROWTH REGULATION, 19(3), 290–305. https://doi.org/10.1007/s003440000045

Sederoff, R. R. (2000). Tree genomes: What will we understand about them by the year 2020 and how might we use that knowledge? Forest Genetics and Sustainability, 23. https://doi.org/10.1007/978-94-017-1576-8_4

Sederoff, R. (1999, August). Building better trees with antisense. NATURE BIOTECHNOLOGY, Vol. 17, pp. 750–751. https://doi.org/10.1038/11678

Marques, C. M., Vasquez-Kool, J., Carocha, V. J., Ferreira, J. G., DM O'Malley, Liu, B. H., & Sederoff, R. (1999). Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E-globulus. THEORETICAL AND APPLIED GENETICS, 99(6), 936–946. https://doi.org/10.1007/s001220051400

Wenck, A. R., Quinn, M., Whetten, R., Pullman, G., & Sederoff, R. (1999). High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda). Plant Molecular Biology, 39(3), 407–416. https://doi.org/10.1023/a:1006126609534

Amerson, H. V., Wilcox, P., Sederoff, R. R., Kuhlman, E. G., O'Malley, D. M., & Grattapaglia, D. (1999). Methods for within family selection of disease resistance in woody perennials using genetic markers. Washington, DC: U.S. Patent and Trademark Office.

MacKay, J., Presnell, T., Jameel, H., Taneda, H., D O'Malley, & Sederoff, R. (1999). Modified lignin and delignification with a CAD-deficient loblolly pine. HOLZFORSCHUNG, 53(4), 403–410. https://doi.org/10.1515/HF.1999.067

Sederoff, R. R. (1999). Surfing on AG Biotech into genomics. Molecular Breeding, 5(1999), 485–491.

Sederoff, R. R., MacKay, J. J., Ralph, J., & Hatfield, R. D. (1999). [Review of Unexpected variation in lignin]. CURRENT OPINION IN PLANT BIOLOGY, 2(2), 145–152. https://doi.org/10.1016/S1369-5266(99)80029-6

Marques, C. M., Araujo, J. A., Ferreira, J. G., Whetten, R., DM O'Malley, Liu, B. H., & Sederoff, R. (1998). AFLP genetic maps of Eucalyptus globulus and E-tereticornis. THEORETICAL AND APPLIED GENETICS, 96(6-7), 727–737. https://doi.org/10.1007/s001220050795

Allona, I., Quinn, M., Shoop, E., Swope, K., St Cyr, S., Carlis, J., … Whetten, R. W. (1998). Analysis of xylem formation in pine by cDNA sequencing. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(16), 9693–9698. https://doi.org/10.1073/pnas.95.16.9693

MacKay, J., O'Malley, D., Whetten, R., & Sederoff, R. (1998). Method of altering lignin in trees. Washington, DC: U.S. Patent and Trademark Office.

Ralph, J., Hatfield, R., Fanchuang, L., Marita, J. M., Ede, R. M., Junpeng, S. R., … Boudet, A. (1998). NMR applications in cell wall research. TAPPI Journal, (1998).

Whetten, R. W., MacKay, J. J., & Sederoff, R. R. (1998). [Review of Recent advances in understanding lignin biosynthesis]. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY, 49(1998), 585–609. https://doi.org/10.1146/annurev.arplant.49.1.585

Sederoff, R. R. (1998). The promise of forest biotechnology. Paper Age, (1998 Aug.), 13–18.

Ralph, J., MacKay, J. J., Hatfield, R. D., OMalley, D. M., Whetten, R. W., & Sederoff, R. R. (1997). Abnormal lignin in a loblolly pine mutant. SCIENCE, 277(5323), 235–239. https://doi.org/10.1126/science.277.5323.235

MacKay, J. J., OMalley, D. M., Presnell, T., Booker, F. L., Campbell, M. M., Whetten, R. W., & Sederoff, R. R. (1997, July 22). Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 94, pp. 8255–8260. https://doi.org/10.1073/pnas.94.15.8255

O'Malley, D. M., Grattapaglia, D., Chaparro, J. X., Wilcox, P. L., Amerson, H. V., Liu, B.-H., … Sederoff, R. (1996). Molecular markers,  forest genetics, and tree breeding. In J. P. Gustafson & R. B. Flavell (Eds.), Genomes of Plants and Animals: 21 Stadler Genetics Symposium (pp. 87–102). https://doi.org/10.1007/978-1-4899-0280-1_7

WHETTEN, R., & SEDEROFF, R. (1995). [Review of LIGNIN BIOSYNTHESIS]. PLANT CELL, 7(7), 1001–1013. https://doi.org/10.2307/3870053

Sederoff, R., Campbell, M., O'Malley, D., & Whetten, R. (1994). Genetic regulation of lignin biosynthesis and the potential modification of wood by genetic engineering in loblolly pine. Genetic Engineering of Plant Secondary Metabolism, 313. https://doi.org/10.1007/978-1-4615-2544-8_12

Grattapaglia, D., & Sederoff, R. (1994). Genetic-linkage maps of eucalyptus-grandis and eucalyptus-urophylla using a pseudo-testcross - mapping strategy and rapd markers. Genetics, 137(4), 1121–1137.

Grattapaglia, D., Chaparro, J., Wilcox, P., McCord, S., Crane, B., Amerson, H., … Sederoff, R. (1993). Application of genetic markers to tree breeding. Proceedings of the 22nd Southern Forest Tree Improvement Conference, 452–463.

Stomp, A., Weissinger, A., & Sederoff, R. (1992). Ballistic transformation of conifers. Washington, DC: U.S. Patent and Trademark Office.

Grattapaglia, D., Chaparro, J., Wilcox, P., McCord, S., Werner, D., Amerson, H., … Sederoff, R. (1992). Mapping in woody plants with RAPD markers: application to breeding in forestry and horticulture. Proceedings of the Symposium on the Applications of RAPD Technology to Plant Breeding, 37–40. Joint Plant Breeding Symposium Series,  Crop Science Society of America, American Society for Horticultural Science, and American Genetics Association.

Sederoff, R. R., Stomp, A.-M., Moore, L. W., & Chilton, S. W. (1989). Method for transforming pine. Washington, DC: U.S. Patent and Trademark Office.

SCHAFFER, H. E., & SEDEROFF, R. R. (1981). IMPROVED ESTIMATION OF DNA FRAGMENT LENGTHS FROM AGAROSE GELS. ANALYTICAL BIOCHEMISTRY, 115(1), 113–122. https://doi.org/10.1016/0003-2697(81)90533-9