William L. Franck

Works (9)

Updated: April 23rd, 2025 19:31

2018 article

Sequential Phosphopeptide Enrichment for Phosphoproteome Analysis of Filamentous Fungi: A Test Case Using Magnaporthe oryzae

Oh, Y., Franck, W. L., & Dean, R. A. (2018, January 1). Methods in Molecular Biology, Vol. 1848, pp. 81–91.

By: Y. Oh n, W. Franck n & R. Dean n 

author keywords: Mass spectrometry; Phosphopeptide enrichment; Magnaporthe oryzae; Iron-IMAC; TiO2; Fungus
MeSH headings : Chromatography, Affinity; Chromatography, Liquid; Computational Biology / methods; Data Analysis; Fungal Proteins; Humans; Magnaporthe / metabolism; Phosphopeptides / chemistry; Phosphopeptides / isolation & purification; Phosphopeptides / metabolism; Phosphoproteins / chemistry; Phosphoproteins / isolation & purification; Phosphoproteins / metabolism; Proteome; Proteomics / methods; Tandem Mass Spectrometry; Titanium / chemistry
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Mass Spectrometry Techniques and Applications; Genomics and Phylogenetic Studies
TL;DR: An effective protocol for phosphopeptide enrichment using an Iron-IMAC resin in combination with titanium dioxide (TiO2) beads from trypsin digested protein samples of the filamentous fungus Magnaporthe oryzae is described. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: May 13, 2019

2016 article

Identification and characterization of suppressors of plant cell death (SPD) effectors from Magnaporthe oryzae

Sharpee, W., Oh, Y., Yi, M., Franck, W., Eyre, A., Okagaki, L. H., … Dean, R. A. (2016, June 15). Molecular Plant Pathology, Vol. 18, pp. 850–863.

By: W. Sharpee n, Y. Oh n, M. Yi *, W. Franck n, A. Eyre n, L. Okagaki n, B. Valent *, R. Dean n 

author keywords: effector; rice blast; suppressor
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Host-Pathogen Interactions; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / metabolism; Plant Leaves / microbiology; Tobacco / metabolism; Tobacco / microbiology
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Plant Pathogenic Bacteria Studies; Toxin Mechanisms and Immunotoxins
TL;DR: A series of effectors that probably act at different stages of the infection process and contribute to the virulence of M. oryzae are identified, some of which were previously unknown or whose function was unknown. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2014 journal article

Comparative transcriptomic analysis of symbiotic Bradyrhizobium japonicum

Symbiosis, 63(3), 123–135.

By: S. Franck, W. Franck, S. Birke, W. Chang, D. Sangurdekar, E. Cytryn, T. Joshi, M. Sadowsky ...

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

Soybean ureases, but not that of Bradyrhizobium japonicum, are involved in the process of soybean root nodulation

Journal of Agricultural and Food Chemistry, 62(16), 3517–3524.

By: M. Medeiros-Silva, W. Franck, M. Borba, S. Pizzato, K. Strodtman, D. Emerich, G. Stacey, J. Poacco, C. Carlini

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation

Molecular & Cellular Proteomics, 12(8), 2249–2265.

By: W. Franck*, E. Gokce n, Y. Oh n, D. Muddiman n  & R. Dean n 

MeSH headings : Cyclic AMP / metabolism; Fungal Proteins / metabolism; Magnaporthe / growth & development; Magnaporthe / metabolism; Mitochondrial Proteins / metabolism; Peptide Hydrolases / metabolism; Proteome; Spores, Fungal / growth & development; Spores, Fungal / metabolism
topics (OpenAlex): Fungal and yeast genetics research; Mycotoxins in Agriculture and Food; Plant-Microbe Interactions and Immunity
TL;DR: The data presented here provide the first comprehensive view of the M. oryzae proteome during early infection-related development and highlight biological processes important for pathogenicity. (via Semantic Scholar)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2012 article

In-Depth Analysis of the Magnaporthe oryzae Conidial Proteome

Gokce, E., Franck, W. L., Oh, Y., Dean, R. A., & Muddiman, D. C. (2012, October 8). Journal of Proteome Research, Vol. 11, pp. 5827–5835.

By: E. Gokce n, W. Franck n, Y. Oh n, R. Dean n  & D. Muddiman n 

author keywords: proteomics; mass spectrometry; Magnaporthe oryzae; FASP; statistical tests; differential protein expression
MeSH headings : Cell Nucleus / chemistry; Chemical Fractionation / methods; Chromatography, Liquid / methods; Cytoplasm / chemistry; Fungal Proteins / analysis; Fungal Proteins / chemistry; Magnaporthe / chemistry; Mass Spectrometry / methods; Nanotechnology; Nuclear Proteins / analysis; Nuclear Proteins / chemistry; Peptides / analysis; Peptides / chemistry; Proteome / analysis; Proteome / chemistry; Reproducibility of Results; Sensitivity and Specificity; Spores, Fungal / chemistry; Time Factors
topics (OpenAlex): Fungal and yeast genetics research; Mycotoxins in Agriculture and Food; Advanced Proteomics Techniques and Applications
TL;DR: The identification of 2912 conidial proteins at a 1% protein false discovery rate (FDR) is reported and the most extensive study performed on M. oryzae conidia to date is presented, suggesting the detected proteins build a representative portion of the predicted proteome. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2012 journal article

Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae

PLoS ONE, 7(8), e42868.

By: Y. Oh n, W. Franck n, S. Han*, A. Shows n, E. Gokce n, D. Muddiman n , R. Dean n 

Ed(s): K. Nielsen

MeSH headings : Boronic Acids / pharmacology; Bortezomib; Cluster Analysis; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Germination / genetics; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Mutation; Nitrogen / metabolism; Oryza / microbiology; Plant Diseases / microbiology; Polyubiquitin / genetics; Polyubiquitin / metabolism; Proteasome Inhibitors / pharmacology; Proteolysis / drug effects; Proteomics; Pyrazines / pharmacology; Ubiquitination
topics (OpenAlex): Fungal and yeast genetics research; Ubiquitin and proteasome pathways; Microbial Natural Products and Biosynthesis
TL;DR: This study suggests that ubiquitination of target proteins plays an important role in nutrient assimilation, development and pathogenicity of M. oryzae. (via Semantic Scholar)
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Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2011 article

Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows

Gokce, E., Shuford, C. M., Franck, W. L., Dean, R. A., & Muddiman, D. C. (2011, September 23). Journal of the American Society for Mass Spectrometry, Vol. 22, pp. 2199–2208.

By: E. Gokce n, C. Shuford n, W. Franck n, R. Dean n  & D. Muddiman n 

author keywords: Label-free; Proteomics; Mass spectrometry; Total spectral count normalization; Normalized spectral abundance factor; Quantification; Spectral counting; Significance test; Fold-change; GeLC-MS/MS; nanoLC-MS; Orbitrap XL
MeSH headings : Animals; Chickens; Chromatography, Gel / methods; Fungal Proteins / analysis; Fungal Proteins / chemistry; Horses; Myoglobin / analysis; Myoglobin / chemistry; Ovalbumin / analysis; Ovalbumin / chemistry; Peptide Mapping / methods; Proteomics / methods; Proteomics / standards; Regression Analysis; Reproducibility of Results; Tandem Mass Spectrometry / methods
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Mass Spectrometry Techniques and Applications; Metabolomics and Mass Spectrometry Studies
TL;DR: The correlation between SpCs of the same proteins across the different data sets was investigated and it was reported that TSpC normalization and NSAF normalization yielded almost ideal slopes of unity for normalized SpC versus average normalized SpCs, while NSP did not afford effective corrections of the unnormalized data. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 article

Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics

Collier, T. S., Sarkar, P., Franck, W. L., Rao, B. M., Dean, R. A., & Muddiman, D. C. (2010, September 16). Analytical Chemistry, Vol. 82, pp. 8696–8702.

By: T. Collier n, P. Sarkar  n, W. Franck n, B. Rao n , R. Dean n  & D. Muddiman n 

Contributors: T. Collier n, P. Sarkar  n, W. Franck n, B. Rao n , R. Dean n  & D. Muddiman n 

MeSH headings : Amino Acids / analysis; Animals; Cell Line; Humans; Isotope Labeling / methods; Mice; Proteomics / methods
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Mass Spectrometry Techniques and Applications; Metabolomics and Mass Spectrometry Studies
TL;DR: A direct comparison of SILAC to label-free quantification by spectral counting of an identical set of data from the bottom-up proteomic analysis of human embryonic stem cells, finding that both strategies result in a similar number of protein identifications. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018

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