William R Atchley

A novel N-terminal domain may dictate the glucose response of Mondo proteins

PLoS One, 7(4).

Evolution of the Max and Mlx Networks in Animals

GENOME BIOLOGY AND EVOLUTION, 3, 915–937.

Joint analysis of transcriptional and post-transcriptional brain tumor data: searching for emergent properties of cellular systems

BMC Bioinformatics, 12.

Walter M. Fitch (1929-2011)

Atchley, W. R. (2011, May 13). SCIENCE, Vol. 332, pp. 804–804.

Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences

JOURNAL OF MOLECULAR EVOLUTION, 67(1), 51–67.

Hepatic endopolyploidy as a cellular consequence of age-specific selection for rate of development in mice

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION, 310B(5), 385–397.

Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative

BIOINFORMATICS, 24(19), 2177–2183.

Application of complex demodulation on bZIP and bHLH-PAS protein domains

Mathematical Biosciences, 207(2), 204–218.

Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins

MOLECULAR BIOLOGY AND EVOLUTION, 24(1), 192–202.

Networks of coevolving sites in structural and functional domains of serpin proteins

MOLECULAR BIOLOGY AND EVOLUTION, 22(7), 1627–1634.

Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6401–6406.

Solving the protein sequence metric problem

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6395–6400.

Phylogenetic analysis of plant basic helix-loop-helix proteins

Journal of Molecular Evolution, 56(6), 742–750.

Origin of the black shank resistance gene, Ph, in tobacco cultivar Coker 371-gold

PLANT DISEASE, 86(10), 1080–1084.

Phylogenetic analyses of amino acid variation in the serpin proteins

MOLECULAR BIOLOGY AND EVOLUTION, 18(8), 1502–1511.

Vertebrate serpins: Construction of a conflict-free phylogeny by combining exon-intron and diagnostic site analyses

MOLECULAR BIOLOGY AND EVOLUTION, 18(4), 577–584.

Body weight and tail length divergence in mice selected for rate of development

JOURNAL OF EXPERIMENTAL ZOOLOGY, 288(2), 151–164.

Cellular consequences in the brain and liver of age-specific selection for rate of development in mice

Genetics, 155(3), 1347–1357.

Characterization and differential expression of a human gene family of olfactomedin-related proteins

GENETICAL RESEARCH, 76(1), 41–50.

Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis

MOLECULAR BIOLOGY AND EVOLUTION, 17(1), 164–178.

Differential longevity in mouse stocks selected for early life growth trajectory

JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES, 55(9), B455–B461.

Effect of long-term selection for early postnatal growth rate on survival and prenatal development of transferred mouse embryos

Journal of Reproduction & Fertility, 118(1), 205–210.

Molecular evolution of the GATA family of transcription factors: Conservation within the DNA-binding domain

JOURNAL OF MOLECULAR EVOLUTION, 50(2), 103–115.

Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 97(7), 3288–3291.

Effect of selection for development rate on reproductive onset in female mice

GENETICAL RESEARCH, 74(1), 55–64.

Evolution of bHLH transcription factors: Modular evolution by domain shuffling?

MOLECULAR BIOLOGY AND EVOLUTION, 16(12), 1654–1663.

Molecular evolution of helix-turn-helix proteins

JOURNAL OF MOLECULAR EVOLUTION, 49(3), 301–309.

Positional dependence, cliques, and predictive motifs in the bHLH protein domain

JOURNAL OF MOLECULAR EVOLUTION, 48(5), 501–516.

Uterine and postnatal maternal effects in mice selected for differential rate of early development

Genetics, 153(2), 905–917.

Molecular evolution of the Myb family of transcription factors: Evidence for polyphyletic origin

JOURNAL OF MOLECULAR EVOLUTION, 46(1), 74–83.

A natural classification of the basic helix-loop-helix class of transcription factors

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 94(10), 5172–5176.

Altering developmental trajectories in mice by restricted index selection

Genetics, 146(2), 629–640.

Developmental quantitative genetics, conditional epigenetic variability and growth in mice

Genetics, 147(2), 765–776.

DEVELOPMENTAL QUANTITATIVE GENETIC MODELS OF EVOLUTIONARY CHANGE

DEVELOPMENTAL GENETICS, 15(1), 92–103.

Genetic affinities of inbred mouse strains of uncertain origin

Molecular Biology and Evolution, 10(6), 1150.

UTERINE EFFECTS, EPIGENETICS, AND POSTNATAL SKELETAL DEVELOPMENT IN THE MOUSE

EVOLUTION, 45(4), 891–909.

A QUANTITATIVE-GENETICS PERSPECTIVE ON MAMMALIAN DEVELOPMENT

AMERICAN NATURALIST, 134(3), 486–512.