Wenbin Zhou
Works (9)
Updated: January 16th, 2024 08:10
2022 article
An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic data
Du, Z.-Y., Xiang, Q.-Y., Cheng, J., Zhou, W., Wang, Q.-F., Soltis, D. E. E., & Soltis, P. S. S. (2023, February 15). AMERICAN JOURNAL OF BOTANY, Vol. 2.
author keywords: biogeography; Cornaceae; Cornus; dogwood; Hyb-Seq; PhyloCode; phylogenomics; plastome phylogeny; RAD-seq
MeSH headings : Phylogeny; Cornaceae; Biological Evolution; Genomics; Africa; Phylogeography
TL;DR:
This study provides an example of integrating genomic and morphological data to produce a robust, explicit species phylogeny that includes fossil taxa, which is translated into an updated classification scheme using the PhyloCode to stabilize names for this taxonomically controversial group.
(via Semantic Scholar)
open access via doi.org (publisher)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: December 9, 2022
2022 journal article
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 64(5), 1020–1043.
author keywords: deep genome skimming; genomic discordance; historical biogeography; massive extinction; reticulate evolution; single-copy nuclear genes
MeSH headings : Fossils; Hybridization, Genetic; Malus / genetics; Phylogeny; Plastids
TL;DR:
The conflict analysis demonstrated that ILS, hybridization, and allopolyploidy could explain the widespread nuclear gene tree discordance and a historical biogeographic analysis integrating living and fossil data supported a widespread East Asian-western North American origin of Malus s.l.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: May 31, 2022
2022 journal article
Phylogenomics AND biogeography of Castanea (chestnut) and Hamamelis (witch-hazel) - Choosing between RAD-seq and Hyb-Seq approaches
MOLECULAR PHYLOGENETICS AND EVOLUTION, 176.
author keywords: RAD-seq; Hyb-Seq; Angiosperms353 genes; Castanea; Hamamelis; America disjunction; Biogeography of eastern Asia-eastern North
MeSH headings : Biodiversity; Biological Evolution; Fossils; Hamamelis; Phylogeny; Phylogeography; Plants
TL;DR:
This study employed RAD-seq and Hyb-Seq of Angiosperms353 genes in phylogenomic and biogeographic studies of Hamamelis and Castanea, two classic examples exhibiting the well-known eastern Asian -eastern North American disjunct distribution, and showed congruences in phylogenetic inference and divergence time dating.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: September 6, 2022
2022 article
Phylogenomics and biogeography of Torreya (Taxaceae)-Integrating data from three organelle genomes, morphology, and fossils and a practical method for reducing missing data from RAD-seq
Zhou, W., Harris, A. J., & Xiang, Q.-Y. (2022, May 30). JOURNAL OF SYSTEMATICS AND EVOLUTION, Vol. 2.
author keywords: Angiosperms353; eastern Asian-North American disjunction; fossilized birth-death model; phylogenetic discordance; plastid genome sequences
TL;DR:
A new pipeline, RAD‐seq Allele Dropout Remedy, is developed in this study of the gymnosperm genus, Torreya, to mitigate ADO in outgroups by recovering missing loci from previously published transcriptomes, and the improved data yielded a more robust phylogeny forTorreya.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: February 13, 2022
2021 journal article
A New Pipeline for Removing Paralogs in Target Enrichment Data
SYSTEMATIC BIOLOGY, 71(2), 410–425.
MeSH headings : Genome; High-Throughput Nucleotide Sequencing; Phylogeny
TL;DR:
The value of Hyb-Seq with data derived from the Angiosperms353 probe set for elucidating species relationships within a genus is demonstrated, and the importance of additional steps to filter paralogous genes and poorly aligned regions is argued.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 7, 2022
2020 journal article
Phylogenomics, biogeography, and evolution of morphology and ecological niche of the eastern Asian-eastern North AmericanNyssa(Nyssaceae)
JOURNAL OF SYSTEMATICS AND EVOLUTION, 58(5), 571–603.
author keywords: eastern Asian-eastern North American-Central American disjunction; evolution of morphology and ecological niche; Fluidigm sequencing; gene tree; species tree; Nyssa; phylogenomics
TL;DR:
A number of evolutionary changes in morphology and ecological niches are found between the EA–ENA disjunct, supporting the ecological selection driving trait evolutions after geographic isolation and demonstrating challenges in phylogenomic studies of lineages with rapid diversification histories.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 6, 2020
2020 journal article
Rediscovery of the lost little dogwood Cornus wardiana (Cornaceae)-Its phylogenetic and morphological distinction and implication in the origin of the Arctic-Sino-Himalayan disjunction
JOURNAL OF SYSTEMATICS AND EVOLUTION, 59(2), 405–416.
author keywords: circumboreal-Himalayan disjunction; Cornus; morphometry; new species; phylogeny
TL;DR:
The results suggest that the dwarf dogwood lineage split from the big‐bracted dogwoods in Asia or Asia‐western North America during the late Paleocene and spread widely to form a Eurasia‐North America distribution; the Arctic‐Sino‐Himalayan disjunction was the result of southward migration in the Miocene followed by extinction in the intervening highland areas.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: April 6, 2020
2019 journal article
Natural selection and repeated patterns of molecular evolution following allopatric divergence
ELife, 8.
MeSH headings : Evolution, Molecular; Asia, Eastern; Genes, Plant; Genetic Speciation; Genetic Variation; North America; Plant Leaves / genetics; Plants / classification; Plants / genetics; Selection, Genetic
TL;DR:
This work examines genome-wide divergence of putatively single-copy orthologous genes (POGs) in 20 allopatric species/variety pairs from diverse angiosperm clades, with 16 pairs reflecting the classic eastern Asia-eastern North America floristic disjunction.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: October 14, 2019
2018 journal article
Resolving relationships and phylogeographic history of the Nyssa sylvatica complex using data from RAD-seq and species distribution modeling
Molecular Phylogenetics and Evolution, 126, 1–16.
author keywords: RAD-seq; LGM; Nyssa; Phylogeography; Refugia; SDM
MeSH headings : Bayes Theorem; Genetic Loci; Models, Theoretical; Nyssa / classification; Nyssa / genetics; Phylogeny; Phylogeography; Polymorphism, Single Nucleotide / genetics; Sequence Analysis, DNA / methods; Species Specificity; Time Factors
TL;DR:
The results support the recognition of two species in the complex, N. sylvatica and N. biflora, following the phylogenetic species concept and support movements of trees in eastern North America in response to climatic changes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
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