Works (42)

2020 journal article

Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis

NATURE COMMUNICATIONS, 11(1).

By: P. Dinh, D. Paudel, H. Brochu, K. Popowski, M. Gracieux, J. Cores, K. Huang, M. Hensley ...

Source: Web Of Science
Added: March 23, 2020

2020 journal article

Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing

JOURNAL OF IMMUNOLOGY, 204(12), 3434–3444.

By: H. Brochu, E. Tseng, E. Smith, M. Thomas, A. Jones, K. Diveley, L. Law, S. Hansen ...

Source: Web Of Science
Added: July 6, 2020

2019 journal article

Fc Characteristics Mediate Selective Placental Transfer of IgG in HIV-Infected Women

CELL, 178(1), 190-+.

By: D. Martinez, Y. Fong, S. Li, F. Yang, M. Jennewein, J. Weiner, E. Harrell, J. Mangold ...

Source: Web Of Science
Added: July 15, 2019

2019 journal article

Fc Gamma Receptor Polymorphisms Modulated the Vaccine Effect on HIV-1 Risk in the HVTN 505 HIV Vaccine Trial

JOURNAL OF VIROLOGY, 93(21).

By: S. Li, P. Gilbert, L. Carpp, C. Pyo, H. Janes, Y. Fong, X. Shen, S. Neidich ...

Source: Web Of Science
Added: October 28, 2019

2019 journal article

Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control

NATURE COMMUNICATIONS, 10.

By: F. Barrenas, K. Raehtz, C. Xu, L. Law, R. Green, G. Silvestri, S. Bosinger, A. Nishida ...

Source: Web Of Science
Added: November 25, 2019

2019 journal article

Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis

MICROBIAL CELL, 6(3), 177–183.

By: . Catherine M. O'Connell, H. Brochu, J. Girardi, E. Harrell, A. Jones, T. Darville, A. Sena, X. Peng

Source: Web Of Science
Added: March 18, 2019

2018 journal article

Noncanonical placental Fc receptors: What is their role in modulating transplacental transfer of maternal IgG?

PLOS Pathogens, 14(8), e1007161.

By: D. Martinez, G. Fouda, X. Peng, M. Ackerman & S. Permar

Ed(s): D. Sheppard

Source: Crossref
Added: July 20, 2019

2017 review

Elucidating the role of host long non-coding RNA during viral infection: Challenges and paths forward

[Review of ]. Vaccines, 5(4).

By: D. Lemler, H. Brochu, F. Yang, E. Harrell & X. Peng

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells

Vaccine, 35(45), 6112–6121.

By: A. Forero, K. Fenstermacher, N. Wohlgemuth, A. Nishida, V. Carter, E. Smith, X. Peng, M. Hayes ...

Source: Crossref
Added: July 20, 2019

2016 journal article

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells

PLOS ONE, 11(3), e0152425.

By: X. Peng, S. Li, P. Gilbert, D. Geraghty & M. Katze

Ed(s): J. Tang

Source: Crossref
Added: July 20, 2019

2016 journal article

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism

Cell Host & Microbe, 19(2), 254–266.

By: J. Tisoncik-Go, D. Gasper, J. Kyle, A. Eisfeld, C. Selinger, M. Hatta, J. Morrison, M. Korth ...

Source: Crossref
Added: July 20, 2019

2015 journal article

Quantitative expression analysis of rhesus macaque MHC alleles

Journal of Immunology, 194(113).

By: X. Peng, C. Pyo, M. Thomas, Y. Pyon, L. Law, R. Wang, D. Geraghty, M. Katze

Source: NC State University Libraries
Added: September 9, 2019

2014 journal article

Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts

RNA Biology, 11(7), 875–890.

By: L. Josset, N. Tchitchek, L. Gralinski, M. Ferris, A. Eisfeld, R. Green, M. Thomas, J. Tisoncik-Go ...

Source: Crossref
Added: July 20, 2019

2014 journal article

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

Journal of Medical Primatology, 43(5), 317–328.

By: X. Peng, L. Pipes, H. Xiong, R. Green, D. Jones, W. Ruzzo, G. Schroth, C. Mason, R. Palermo, M. Katze

Source: Crossref
Added: July 20, 2019

2014 journal article

Deep Sequencing of HIV-Infected Cells: Insights into Nascent Transcription and Host-Directed Therapy

Journal of Virology, 88(16), 8768–8782.

By: X. Peng, P. Sova, R. Green, M. Thomas, M. Korth, S. Proll, J. Xu, Y. Cheng ...

Source: Crossref
Added: July 20, 2019

2014 journal article

Deep Transcriptional Sequencing of Mucosal Challenge Compartment from Rhesus Macaques Acutely Infected with Simian Immunodeficiency Virus Implicates Loss of Cell Adhesion Preceding Immune Activation

Journal of Virology, 88(14), 7962–7972.

By: F. Barrenas, R. Palermo, B. Agricola, M. Agy, L. Aicher, V. Carter, L. Flanary, R. Green ...

Ed(s): G. Silvestri

Source: Crossref
Added: July 20, 2019

2014 journal article

Genomic Profiling of Collaborative Cross Founder Mice Infected with Respiratory Viruses Reveals Novel Transcripts and Infection-Related Strain-Specific Gene and Isoform Expression

G3: Genes|Genomes|Genetics, 4(8), 1429–1444.

By: H. Xiong, J. Morrison, M. Ferris, L. Gralinski, A. Whitmore, R. Green, M. Thomas, J. Tisoncik-Go ...

Source: Crossref
Added: July 20, 2019

2014 journal article

Infection with MERS-CoV Causes Lethal Pneumonia in the Common Marmoset

PLoS Pathogens, 10(8), e1004250.

By: D. Falzarano, E. de Wit, F. Feldmann, A. Rasmussen, A. Okumura, X. Peng, M. Thomas, N. van Doremalen ...

Ed(s): M. Denison

Source: Crossref
Added: July 20, 2019

2014 journal article

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

Nature Biotechnology, 32(12), 1250–1255.

By: X. Peng, J. Alföldi, K. Gori, A. Eisfeld, S. Tyler, J. Tisoncik-Go, D. Brawand, G. Law ...

Source: Crossref
Added: July 20, 2019

2014 journal article

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

Nucleic Acids Research, 43(D1), D737–D742.

By: X. Peng, J. Thierry-Mieg, D. Thierry-Mieg, A. Nishida, L. Pipes, M. Bozinoski, M. Thomas, S. Kelly ...

Source: Crossref
Added: July 20, 2019

2013 journal article

Next-Generation Sequence Analysis of the Genome of RFHVMn, the Macaque Homolog of Kaposi's Sarcoma (KS)-Associated Herpesvirus, from a KS-Like Tumor of a Pig-Tailed Macaque

Journal of Virology, 87(24), 13676–13693.

By: A. Bruce, J. Ryan, M. Thomas, X. Peng, A. Grundhoff, C. Tsai, T. Rose

Source: Crossref
Added: July 20, 2019

2012 journal article

A new approach to bias correction in RNA-Seq

Bioinformatics, 28(7), 921–928.

By: D. Jones, W. Ruzzo, X. Peng & M. Katze

Source: Crossref
Added: July 20, 2019

2012 journal article

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

Nucleic Acids Research, 40(22), e171–e171.

By: D. Jones, W. Ruzzo, X. Peng & M. Katze

Source: Crossref
Added: July 20, 2019

2012 journal article

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

Nucleic Acids Research, 41(D1), D906–D914.

By: L. Pipes, S. Li, M. Bozinoski, R. Palermo, X. Peng, P. Blood, S. Kelly, J. Weiss ...

Source: Crossref
Added: July 20, 2019

2011 journal article

Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection

MBio, 2(6).

By: X. Peng, L. Gralinski, M. Ferris, M. Frieman, M. Thomas, S. Proll, M. Korth, J. Tisoncik ...

Ed(s): B. Cullen & T. Dermody

Source: Crossref
Added: July 20, 2019

2011 journal article

Next-Generation Sequencing Reveals HIV-1-Mediated Suppression of T Cell Activation and RNA Processing and Regulation of Noncoding RNA Expression in a CD4+ T Cell Line

MBio, 2(5).

By: S. Chang, P. Sova, X. Peng, J. Weiss, G. Law, R. Palermo, M. Katze

Ed(s): D. Unutmaz & T. Dermody

Source: Crossref
Added: July 20, 2019

2010 journal article

Lethal Dissemination of H5N1 Influenza Virus Is Associated with Dysregulation of Inflammation and Lipoxin Signaling in a Mouse Model of Infection

Journal of Virology, 84(15), 7613–7624.

By: C. Cilloniz, M. Pantin-Jackwood, C. Ni, A. Goodman, X. Peng, S. Proll, V. Carter, E. Rosenzweig ...

Source: Crossref
Added: July 20, 2019

2010 journal article

MicroRNA Expression and Virulence in Pandemic Influenza Virus-Infected Mice

Journal of Virology, 84(6), 3023–3032.

By: Y. Li, E. Chan, J. Li, C. Ni, X. Peng, E. Rosenzweig, T. Tumpey, M. Katze

Source: Crossref
Added: July 20, 2019

2010 journal article

SAP1 is a critical post-transcriptional regulator of infectivity in malaria parasite sporozoite stages

Molecular Microbiology, 79(4), 929–939.

By: A. Aly, S. Lindner, D. MacKellar, X. Peng & S. Kappe

Source: Crossref
Added: July 20, 2019

2010 journal article

Unique Signatures of Long Noncoding RNA Expression in Response to Virus Infection and Altered Innate Immune Signaling

MBio, 1(5).

By: X. Peng, L. Gralinski, C. Armour, M. Ferris, M. Thomas, S. Proll, B. Bradel-Tretheway, M. Korth ...

Ed(s): N. Sonenberg & T. Dermody

Source: Crossref
Added: July 20, 2019

2009 journal article

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers

BMC Genomics, 10(1), 373.

By: X. Peng, Y. Li, K. Walters, E. Rosenzweig, S. Lederer, L. Aicher, S. Proll, M. Katze

Source: Crossref
Added: July 20, 2019

2009 journal article

Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events

BMC Genomics, 10(1), 270.

By: S. Albuquerque, C. Carret, A. Grosso, A. Tarun, X. Peng, S. Kappe, M. Prudêncio, M. Mota

Source: Crossref
Added: July 20, 2019

2009 journal article

Lethal Influenza Virus Infection in Macaques Is Associated with Early Dysregulation of Inflammatory Related Genes

PLoS Pathogens, 5(10), e1000604.

By: C. Cillóniz, K. Shinya, X. Peng, M. Korth, S. Proll, L. Aicher, V. Carter, J. Chang ...

Ed(s): M. Diamond

Source: Crossref
Added: July 20, 2019

2009 journal article

P58IPK: A Novel “CIHD” Member of the Host Innate Defense Response against Pathogenic Virus Infection

PLoS Pathogens, 5(5), e1000438.

By: A. Goodman, J. Fornek, G. Medigeshi, L. Perrone, X. Peng, M. Dyer, S. Proll, S. Knoblaugh ...

Ed(s): R. Andino

Source: Crossref
Added: July 20, 2019

2009 journal article

The Alpha/Beta Interferon Receptor Provides Protection against Influenza Virus Replication but Is Dispensable for Inflammatory Response Signaling

Journal of Virology, 84(4), 2027–2037.

By: A. Goodman, H. Zeng, S. Proll, X. Peng, C. Cilloniz, V. Carter, M. Korth, T. Tumpey, M. Katze

Source: Crossref
Added: July 20, 2019

2009 journal article

The Type I interferon receptor protects against influenza virus replication while the Type II receptor is dispensible

Cytokine, 48(1-2), 83.

By: A. Goodman, H. Zeng, C. Cilloniz, V. Carter, X. Peng, S. Proll, T. Tumpey, M. Katze

Source: Crossref
Added: August 28, 2020

2009 journal article

Virus–host interactions: from systems biology to translational research

Current Opinion in Microbiology, 12(4), 432–438.

By: X. Peng, E. Chan, Y. Li, D. Diamond, M. Korth & M. Katze

Source: Crossref
Added: July 20, 2019

2008 journal article

A combined transcriptome and proteome survey of malaria parasite liver stages

Proceedings of the National Academy of Sciences, 105(1), 305–310.

By: A. Tarun, X. Peng, R. Dumpit, Y. Ogata, H. Silva-Rivera, N. Camargo, T. Daly, L. Bergman, S. Kappe

Source: Crossref
Added: July 20, 2019

2008 journal article

Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis

Bioinformatics, 24(13), i383–i389.

By: A. Vaughan, S. Chiu, G. Ramasamy, L. Li, M. Gardner, A. Tarun, S. Kappe, X. Peng

Source: Crossref
Added: July 20, 2019

2008 journal article

Distinct Malaria Parasite Sporozoites Reveal Transcriptional Changes That Cause Differential Tissue Infection Competence in the Mosquito Vector and Mammalian Host

Molecular and Cellular Biology, 28(20), 6196–6207.

By: S. Mikolajczak, H. Silva-Rivera, X. Peng, A. Tarun, N. Camargo, V. Jacobs-Lorena, T. Daly, L. Bergman ...

Source: Crossref
Added: July 20, 2019

2007 chapter

Detecting Network Motifs in Gene Co-expression Networks Through Integration of Protein Domain Information

In Methods of Microarray Data Analysis V (pp. 89–102).

By: X. Peng, M. Langston, A. Saxton, N. Baldwin & J. Snoddy

Source: Crossref
Added: July 20, 2019

2005 journal article

GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments

BMC Bioinformatics, 6(1), 72.

By: S. Kirov, X. Peng, E. Baker, D. Schmoyer, B. Zhang & J. Snoddy

Source: Crossref
Added: September 9, 2019