Yaroslava G Yingling

Also known as: Yara Yingling

https://orcid.org/0000-0002-8557-9992

computational materials science

Works (151)

Updated: November 22nd, 2023 05:01

2023 article

Correlation of Emulsion Chemistry, Film Morphology, and Device Performance in Polyfluorene LEDs Deposited by RIR-MAPLE

Zhang, B., Pinky, S. K., Kwansa, A. L., Ferguson, S., Yingling, Y. G., & Stiff-Roberts, A. D. (2023, March 29). ACS APPLIED MATERIALS & INTERFACES, Vol. 3.

By: B. Zhang*, S. Pinky n, A. Kwansa n, S. Ferguson*, Y. Yingling n & A. Stiff-Roberts*

co-author countries: United States of America 🇺🇸
author keywords: matrix-assisted pulsed laser evaporation; molecular dynamics; polyfluorene; emulsions; light-emitting diodes
Sources: ORCID, Web Of Science
Added: March 30, 2023

2023 journal article

DFT-Based Calculation of Molecular Hyperpolarizability and SFG Intensity of Symmetric and Asymmetric Stretch Modes of Alkyl Groups

JOURNAL OF PHYSICAL CHEMISTRY B, 127(39), 8456–8467.

By: J. Choi*, A. Kwansa n, Y. Yingling n & S. Kim*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: October 16, 2023

2023 article

Effect of solvent on the emulsion and morphology of polyfluorene films: all-atom molecular dynamics approach

Pinky, S. K., Kwansa, A. L., Zhang, B., Stiff-Roberts, A. D., & Yingling, Y. G. (2023, February 2). SOFT MATTER, Vol. 2.

By: S. Pinky n, A. Kwansa n, B. Zhang*, A. Stiff-Roberts* & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Web Of Science
Added: February 14, 2023

2023 journal article

Insights into substrate coordination and glycosyl transfer of poplar cellulose synthase-8

STRUCTURE, 31(10), 1166-+.

By: P. Verma*, A. Kwansa n, R. Ho*, Y. Yingling n & J. Zimmer*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: November 13, 2023

2023 article

Molecular Mechanism of Plasticizer Exudation from Polyvinyl Chloride

Kwansa, A. L. L., Pani, R. C. C., DeLoach, J. A. A., Tieppo, A., Moskala, E. J. J., Perri, S. T. T., & Yingling, Y. G. G. (2023, June 22). MACROMOLECULES, Vol. 6.

By: A. Kwansa n, R. Pani n, J. DeLoach*, A. Tieppo*, E. Moskala*, S. Perri*, Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: July 10, 2023

2023 article

Resolving Structure of ssDNA in Solution by Fusing Molecular Simulations and Scattering Experiments with Machine Learning

Oweida, T. J., & Yingling, Y. G. (2023, September 7). ADVANCED THEORY AND SIMULATIONS, Vol. 9.

By: T. Oweida n & Y. Yingling n

co-author countries: United States of America 🇺🇸
author keywords: flexible molecular structure determination; genetic algorithm; molecular dynamics simulations; SAXS; ssDNA
Sources: Web Of Science, ORCID
Added: September 18, 2023

2023 article

Role of Nanoscale Morphology on the Efficiency of Solvent-Based Desalination Method

Peerless, J. S., Gulyuk, A. V., Milliken, N. J. B., Kim, G. D., Reid, E., Lee, J. W., … Yingling, Y. G. (2023, January 25). ACS ES&T WATER, Vol. 1.

By: J. Peerless n, A. Gulyuk n, N. Milliken n, G. Kim*, E. Reid*, J. Lee*, D. Kim*, Z. Hendren*, Y. Choi*, Y. Yingling n

co-author countries: Korea (Republic of) 🇰🇷 Saudi Arabia 🇸🇦 United States of America 🇺🇸
author keywords: solvent-based desalination; organic solvent; molecular dynamics simulation; temperature swing solvent extraction
Sources: ORCID, Web Of Science
Added: January 27, 2023

2023 article

Solvent Effects in Ligand Stripping Behavior of Colloidal Nanoparticles

Mahmood, A. U., Rizvi, M. H., Tracy, J. B., & Yingling, Y. G. (2023, June 13). ACS NANO, Vol. 6.

By: A. Mahmood n, M. Rizvi n, J. Tracy n & Y. Yingling n

co-author countries: United States of America 🇺🇸
author keywords: nanoparticles; atomisticsimulations; ligandremoval; ligand stripping isotherm; solvent effects
Sources: Web Of Science, ORCID
Added: July 3, 2023

2023 article

Squid Skin Cell-Inspired Refractive Index Mapping of Cells, Vesicles, and Nanostructures

Chatterjee, A., Pratakshya, P., Kwansa, A. L., Kaimal, N., Cannon, A. H., Sartori, B., … Gorodetsky, A. A. (2023, January 24). ACS BIOMATERIALS SCIENCE & ENGINEERING, Vol. 1.

By: A. Chatterjee*, P. Pratakshya*, A. Kwansa n, N. Kaimal*, A. Cannon n, B. Sartori*, B. Marmiroli*, H. Orins* ...

co-author countries: Austria 🇦🇹 Italy 🇮🇹 United States of America 🇺🇸
author keywords: cephalopods; engineered cells; optical materials; refractive index; self-assembly; proteins; reflectins
MeSH headings : Animals; Decapodiformes / chemistry; Refractometry; Proteins / chemistry; Biocompatible Materials; Nanostructures
Sources: Web Of Science, ORCID
Added: March 13, 2023

2022 journal article

A Comparison between the Lower Critical Solution Temperature Behavior of Polymers and Biomacromolecules

Physchem.

By: Y. Xie n, N. Li n, A. Singh n, S. Deshmukh* & Y. Yingling n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: March 23, 2022

2022 journal article

All-Atom Simulation Method for Zeeman Alignment and DipolarAssembly of Magnetic Nanoparticles br

JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 18(5), 3122–3135.

By: A. Mahmood n & Y. Yingling n

co-author countries: United States of America 🇺🇸
MeSH headings : Ligands; Magnetic Fields; Magnetics; Magnetite Nanoparticles / chemistry; Solvents
Sources: ORCID, Web Of Science
Added: March 11, 2022

2022 article

Evidence for Plant-Conserved Region Mediated Trimeric CESAs in Plant Cellulose Synthase Complexes br

Du, J., Vandavasi, V. G., Molloy, K. R., Yang, H., Massenburg, L. N., Singh, A., … Nixon, B. T. (2022, August 10). BIOMACROMOLECULES, Vol. 8.

By: J. Du*, V. Vandavasi*, K. Molloy*, H. Yang*, L. Massenburg*, A. Singh n, A. Kwansa n, Y. Yingling n ...

co-author countries: China 🇨🇳 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins; Cell Wall; Cellulose; Glucosyltransferases / chemistry; Glucosyltransferases / genetics
Sources: ORCID, Web Of Science
Added: August 11, 2022

2022 journal article

Gold nanoparticle design for RNA compaction

BIOINTERPHASES, 17(6).

By: J. Nash n, M. Manning n, A. Gulyuk n, A. Kuznetsov* & Y. Yingling n

co-author countries: Chile 🇨🇱 United States of America 🇺🇸
MeSH headings : Gold / chemistry; RNA; Metal Nanoparticles / chemistry; Ligands; Nucleic Acids / metabolism
Sources: ORCID, Web Of Science
Added: November 3, 2022

2022 article

Mapping the Morphological Landscape of Oligomeric Di-block Peptide-Polymer Amphiphiles**

Allen, B. P., Wright, Z. M., Taylor, H. F., Oweida, T. J., Kader-Pinky, S., Patteson, E. F., … Knight, A. S. (2022, January 27). ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, Vol. 1.

By: B. Allen*, Z. Wright*, H. Taylor*, T. Oweida n, S. Kader-Pinky n, E. Patteson*, K. Bucci*, C. Cox* ...

co-author countries: United States of America 🇺🇸
author keywords: Biomimetic; Electron Microscopy; Peptide-Polymer Amphiphile; Self-Assembly; Supramolecular Chemistry
MeSH headings : Biomimetics; Hydrophobic and Hydrophilic Interactions; Particle Size; Peptides / chemistry; Polymers / chemistry
Sources: ORCID, Web Of Science
Added: January 27, 2022

2022 journal article

Mapping the Morphological Landscape of Oligomeric Di‐block Peptide–Polymer Amphiphiles**

Angewandte Chemie.

By: B. Allen*, Z. Wright*, H. Taylor*, T. Oweida n, S. Kader‐Pinky n, E. Patteson*, K. Bucci*, C. Cox* ...

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 27, 2022

2021 journal article

Assessment of AMBER Force Fields for Simulations of ssDNA

JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 17(2), 1208–1217.

By: T. Oweida n, H. Kim n, J. Donald n, A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸
MeSH headings : DNA, Single-Stranded / chemistry; Fluorescence Resonance Energy Transfer; Models, Chemical; Nuclear Magnetic Resonance, Biomolecular / methods; Nucleic Acid Conformation; Scattering, Small Angle; X-Ray Diffraction
Sources: ORCID, Web Of Science
Added: January 15, 2021

2021 journal article

Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities

ACS APPLIED MATERIALS & INTERFACES, 13(33), 39030–39041.

By: M. Chandler*, B. Minevich*, B. Roark*, M. Viard*, M. Johnson*, M. Rizvi n, T. Deaton n, S. Kozlov* ...

co-author countries: Slovakia 🇸🇰 United States of America 🇺🇸
author keywords: quantum dots; therapeutic nucleic acids; 3D assemblies; programmable assembly; materials organization; bioimaging; therapeutic delivery
MeSH headings : Cell Line, Tumor; Cell Membrane Permeability; Cell Survival / drug effects; Cell Tracking; Cross-Linking Reagents / chemistry; Drug Carriers / chemistry; Gene Silencing / drug effects; Humans; Luminescent Agents / chemistry; Models, Molecular; Nucleic Acids / chemistry; Optical Imaging; Quantum Dots / chemistry; Structure-Activity Relationship; Surface Properties
Sources: Web Of Science, ORCID
Added: September 27, 2021

2021 journal article

Insights into Structure and Aggregation Behavior of Elastin-like Polypeptide Coacervates: All-Atom Molecular Dynamics Simulations

JOURNAL OF PHYSICAL CHEMISTRY B, 125(30), 8627–8635.

By: N. Li n, Y. Xie n & Y. Yingling n

co-author countries: United States of America 🇺🇸
MeSH headings : Elastin; Hydrophobic and Hydrophilic Interactions; Molecular Dynamics Simulation; Peptides; Temperature
Sources: Web Of Science, ORCID
Added: August 23, 2021

2021 journal article

Phenotypic effects of changes in the FTVTxK region of an Arabidopsis secondary wall cellulose synthase compared with results from analogous mutations in other isoforms

PLANT DIRECT, 5(8).

By: J. Burris n, M. Makarem*, E. Slabaugh n, A. Chaves*, E. Pierce n, J. Lee*, S. Kiemle*, A. Kwansa n ...

co-author countries: United States of America 🇺🇸
author keywords: AtCesA7; cellulose synthesis complex; genetic complementation; irx3-1 mutant; PpCesA5; protein engineering; sum frequency generation spectroscopy
Sources: ORCID, Web Of Science
Added: August 6, 2021

2021 journal article

Uncertainty Quantification and Sensitivity Analysis of Partial Charges on Macroscopic Solvent Properties in Molecular Dynamics Simulations with a Machine Learning Model

JOURNAL OF CHEMICAL INFORMATION AND MODELING, 61(4), 1745–1761.

By: J. Peerless n, A. Kwansa n, B. Hawkins n, R. Smith n & Y. Yingling n

co-author countries: United States of America 🇺🇸
MeSH headings : Machine Learning; Molecular Dynamics Simulation; Solvents; Static Electricity; Uncertainty
Sources: ORCID, Web Of Science
Added: March 18, 2021

2021 journal article

Weakly Ionically Bound Thermosensitive Hyperbranched Polymers

LANGMUIR, 37(9), 2913–2927.

By: H. Lee*, A. Stryutsky*, A. Mahmood n, A. Singh n, V. Shevchenko, Y. Yingling n, V. Tsukruk*

co-author countries: Ukraine 🇺🇦 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: April 12, 2021

2020 journal article

Anisotropic Optical and Frictional Properties of Langmuir-Blodgett Film Consisting of Uniaxially-Aligned Rod-Shaped Cellulose Nanocrystals

ADVANCED MATERIALS INTERFACES, 7(9).

co-author countries: United States of America 🇺🇸
author keywords: cellulose nanocrystals; frictional anisotropy; Langmuir-Blodgett films; optical anisotropy; uniaxial alignments
Sources: Web Of Science, ORCID
Added: June 1, 2020

2020 journal article

Co-assembling Polysaccharide Nanocrystals and Nanofibers for Robust Chiral Iridescent Films

ACS Applied Materials & Interfaces, 12(31), 35345–35353.

By: R. Xiong*, A. Singh n, S. Yu*, S. Zhang*, H. Lee*, Y. Yingling n, D. Nepal*, T. Bunning*, V. Tsukruk*

co-author countries: United States of America 🇺🇸
author keywords: mixed nanocelluloses; photonic films; self-assembly at interfaces; chiral nematic nanostructures; robust mechanical properties
MeSH headings : Cellulose / chemistry; Nanofibers / chemistry; Nanoparticles / chemistry; Particle Size; Polysaccharides / chemistry; Surface Properties
Source: ORCID
Added: July 23, 2020

2020 journal article

Effect of Octadecylamine Surfactant on DNA Interactions with Graphene Surfaces

Langmuir, 36(4), 931–938.

By: H. Kim n, N. Brown n, S. Zauscher* & Y. Yingling n

co-author countries: United States of America 🇺🇸
MeSH headings : Amines / chemistry; DNA / chemistry; Graphite / chemistry; Molecular Dynamics Simulation; Particle Size; Surface Properties; Surface-Active Agents / chemistry
Source: ORCID
Added: January 23, 2020

2020 journal article

In silico structure prediction of full-length cotton cellulose synthase protein (GhCESA1) and its hierarchical complexes

Cellulose, 27(10), 5597–5616.

By: A. Singh n, A. Kwansa n, H. Kim n, J. Williams n, H. Yang*, N. Li n, J. Kubicki*, A. Roberts*, C. Haigler n, Y. Yingling n

co-author countries: United States of America 🇺🇸
author keywords: Plant; Cellulose synthesis complex; Homotrimer; Protein structure prediction; Molecular dynamics simulation
Sources: ORCID, Crossref
Added: May 1, 2020

2020 article

Materials matter in phosphorus sustainability

Jones, J. L., Yingling, Y. G., Reaney, I. M., & Westerhoff, P. (2020, January). MRS BULLETIN, Vol. 45, pp. 7–10.

By: J. Jones n, Y. Yingling n, I. Reaney* & P. Westerhoff*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: February 17, 2020

2020 journal article

Merging Materials and Data Science: Opportunities, Challenges, and Education in Materials Informatics

MRS Advances, 3, 1–18.

By: T. Oweida n, A. Mahmood n, M. Manning n, S. Rigin n & Y. Yingling n

co-author countries: United States of America 🇺🇸
author keywords: education; informatics; material availability; data
Source: ORCID
Added: March 11, 2020

2020 journal article

Partially Fluorinated Copolymers as Oxygen Sensitive(19)F MRI Agents

CHEMISTRY-A EUROPEAN JOURNAL, 26(44), 9982–9990.

By: N. Taylor*, S. Chung*, A. Kwansa n, R. Johnson*, A. Teator*, N. Milliken n, K. Koshlap*, Y. Yingling n, Y. Lee*, F. Leibfarth*

co-author countries: United States of America 🇺🇸
author keywords: F-19 MRI; amphiphilic copolymer; fluorinated monomers; oxygen sensing; polyacrylates
MeSH headings : Fluorine / analysis; Fluorine / chemistry; Halogenation; Magnetic Resonance Imaging; Oxygen / analysis; Oxygen / chemistry; Partial Pressure; Polymers / chemistry
Sources: Web Of Science, ORCID
Added: July 20, 2020

2020 journal article

Structure, self-assembly, and properties of a truncated reflectin variant

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(52), 32891–32901.

By: M. Umerani*, P. Pratakshya*, A. Chatterjee*, J. Sanchez*, H. Kim n, G. Ilc*, M. Kovacic*, C. Magnan* ...

co-author countries: Austria 🇦🇹 Italy 🇮🇹 Slovenia 🇸🇮 United States of America 🇺🇸
author keywords: reflectin; self-assembly; proteins; biomaterials; optical properties
Sources: Web Of Science, ORCID
Added: January 25, 2021

2019 journal article

Biochemical and physiological flexibility accompanies reduced cellulose biosynthesis in Brachypodium cesa1S830N

AoB PLANTS, 11(5).

By: C. Brabham*, A. Singh n, J. Stork*, Y. Rong*, I. Kumar*, K. Kikuchi*, Y. Yingling n, T. Brutnell*, J. Rose*, S. Debolt*

co-author countries: United States of America 🇺🇸

Ed(s): P. Jameson

Sources: Crossref, ORCID
Added: December 16, 2019

2019 chapter

Dissipative Particle Dynamics Approaches to Modeling the Self-Assembly and Morphology of Neutral and Ionic Block Copolymers in Solution

In E. Maginn & J. Errington (Eds.), Foundations of Molecular Modeling and Simulation: Select Papers from FOMMS 2018 (pp. 75–100).

By: T. Deaton n, F. Aydin*, N. Li n, X. Chu*, M. Dutt* & Y. Yingling n

co-author countries: United States of America 🇺🇸

Ed(s): E. Maginn & J. Errington

Sources: NC State University Libraries, ORCID
Added: May 3, 2021

2019 journal article

High-Performance Chromatographic Characterization of Surface Chemical Heterogeneities of Fluorescent Organic–Inorganic Hybrid Core–Shell Silica Nanoparticles

ACS Nano, 13(2), 1795–1804.

By: T. Gardinier, F. Kohle, J. Peerless n, K. Ma, M. Turker, J. Hinckley, Y. Yingling n, U. Wiesner

co-author countries: United States of America 🇺🇸

Contributors: T. Gardinier, F. Kohle, J. Peerless n, K. Ma, M. Turker, J. Hinckley, Y. Yingling n, U. Wiesner

author keywords: nanoparticle heterogeneity; nanoparticle characterization; surface chemistry heterogeneity; nanoparticle surface functionalization; high-performance liquid chromatography; fluorescence correlation spectroscopy; molecular dynamics
MeSH headings : Chromatography, High Pressure Liquid / methods; Nanomedicine / methods; Nanoparticles / chemistry; Silicon Dioxide / chemistry
Sources: Web Of Science, Crossref, ORCID
Added: March 25, 2019

2019 journal article

Intrinsically disordered proteins access a range of hysteretic phase separation behaviors

Science Advances, 5(10), eaax5177.

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸

Contributors: A. Chilkoti*, Y. Yingling n, I. Weitzhandler*, M. Dzuricky*, P. Weber*, S. Roberts*, N. Li*, F. Quiroz

MeSH headings : Amino Acids / chemistry; Antifreeze Proteins / chemistry; Circular Dichroism; Hydrogen Bonding; Hydrophobic and Hydrophilic Interactions; Intrinsically Disordered Proteins / chemistry; Molecular Dynamics Simulation; Nanoparticles / chemistry; Phase Transition; Proline / chemistry; Temperature; Urea / chemistry
Sources: Web Of Science, Crossref, ORCID
Added: November 4, 2019

2019 journal article

Simulations of Cellulose Synthesis Initiation and Termination in Bacteria

The Journal of Physical Chemistry B, 123(17), 3699–3705.

By: H. Yang*, J. McManus*, D. Oehme*, A. Singh n, Y. Yingling n, M. Tien*, J. Kubicki*

co-author countries: United States of America 🇺🇸

Contributors: J. Kubicki*, M. Tien*, Y. Yingling n, A. Singh n, D. Oehme*, J. McManus*, H. Yang*

MeSH headings : Cellulose / biosynthesis; Cellulose / chemistry; Glucosyltransferases / metabolism; Molecular Dynamics Simulation; Particle Size; Quantum Theory; Rhodobacter sphaeroides / enzymology; Surface Properties
Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Bathophenanthroline Disulfonate Ligand-Induced Self-Assembly of Ir(III) Complexes in Water: An Intriguing Class of Photoluminescent Soft Materials

ACS Omega, 3(10), 14027–14038.

By: M. McGoorty n, A. Singh n, T. Deaton n, B. Peterson n, C. Taliaferro n, Y. Yingling n, F. Castellano n

co-author countries: United States of America 🇺🇸

Contributors: F. Castellano n, Y. Yingling n, C. Taliaferro n, B. Peterson n, T. Deaton n, A. Singh n, M. McGoorty n

Sources: Web Of Science, Crossref, ORCID
Added: November 26, 2018

2018 journal article

Cellulose synthase "class specific regions' are intrinsically disordered and functionally undifferentiated

JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 60(6), 481–497.

By: T. Scavuzzo-Duggan*, A. Chaves*, A. Singh n, L. Sethaphong n, E. Slabaugh n, Y. Yingling n, C. Haigler n, A. Roberts*

co-author countries: United States of America 🇺🇸

Contributors: A. Roberts*, C. Haigler n, Y. Yingling n, E. Slabaugh n, L. Sethaphong n, A. Singh n, A. Chaves*, T. Scavuzzo-Duggan*

MeSH headings : Amino Acid Sequence; Bryopsida / enzymology; Cellulose / metabolism; Gene Knockout Techniques; Genetic Complementation Test; Genetic Vectors / metabolism; Glucosyltransferases / chemistry; Glucosyltransferases / classification; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / metabolism; Isoenzymes / chemistry; Isoenzymes / metabolism; Models, Molecular; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Design of Histone-Mimic Nanoparticles for DNA and RNA Compaction using Molecular Modeling

Biophysical Journal, 114(3), 362a.

By: M. Manning n, J. Nash n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: January 19, 2020

2018 journal article

Enzymatic Synthesis of Nucleobase-Modified Single-Stranded DNA Offers Tunable Resistance to Nuclease Degradation

Biomacromolecules, 19(8), 3525–3535.

By: R. Gu*, T. Oweida n, Y. Yingling n, A. Chilkoti* & S. Zauscher*

co-author countries: United States of America 🇺🇸

Contributors: R. Gu*, T. Oweida n, Y. Yingling n, A. Chilkoti* & S. Zauscher*

MeSH headings : Biocatalysis; DNA Nucleotidylexotransferase / metabolism; DNA, Single-Stranded / chemical synthesis; DNA, Single-Stranded / chemistry; Deoxyribonucleases / metabolism; Hydrolysis; Protein Binding; Purine Nucleosides / chemistry
Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Progress in ligand design for monolayer-protected nanoparticles for nanobio interfaces

Biointerphases, 13(6), 06D502.

By: M. Manning n, A. Kwansa n, T. Oweida n, J. Peerless n, A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, A. Singh n, J. Peerless n, T. Oweida n, A. Kwansa n & M. Manning n

MeSH headings : Drug Carriers / chemistry; Humans; Nanomedicine / economics; Nanomedicine / methods; Nanomedicine / trends; Nanoparticles / chemistry; Surface Properties; Technology, Pharmaceutical / economics; Technology, Pharmaceutical / methods; Technology, Pharmaceutical / trends
Sources: Web Of Science, Crossref, ORCID
Added: December 3, 2018

2018 journal article

Sequence Directionality Dramatically Affects LCST Behavior of Elastin-Like Polypeptides

Biomacromolecules, 19(7), 2496–2505.

By: N. Li n, S. Roberts*, F. Quiroz*, A. Chilkoti* & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, A. Chilkoti*, F. Quiroz*, S. Roberts* & N. Li n

MeSH headings : Amino Acid Motifs; Elastin / chemistry; Molecular Dynamics Simulation; Phase Transition; Protein Domains; Temperature
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2018 journal article

Soft Matter Informatics: Current Progress and Challenges

Advanced Theory and Simulations, 2(1), 1800129.

By: J. Peerless, N. Milliken, T. Oweida, M. Manning & Y. Yingling*

Contributors: Y. Yingling*, M. Manning, T. Oweida, N. Milliken & J. Peerless

author keywords: databases; informatics; machine learning; polymers; soft matter
Sources: ORCID, Crossref
Added: December 16, 2019

2018 journal article

Wrapping Nanocellulose Nets around Graphene Oxide Sheets

Angewandte Chemie International Edition, 57(28), 8508–8513.

By: R. Xiong*, H. Kim n, L. Zhang*, V. Korolovych*, S. Zhang*, Y. Yingling n, V. Tsukruk*

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: R. Xiong*, H. Kim n, L. Zhang*, V. Korolovych*, S. Zhang*, Y. Yingling n, V. Tsukruk*

author keywords: cellulose nanofibers; graphene; mechanical properties; self-assembly; water transport
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2017 review

Advances in Molecular Modeling of Nanoparticle Nucleic Acid Interfaces

[Review of ]. BIOCONJUGATE CHEMISTRY, 28(1), 3–10.

By: J. Nash n, A. Kwansa n, J. Peerless n, H. Kim n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, H. Kim n, J. Peerless n, A. Kwansa n & J. Nash n

MeSH headings : Ligands; Models, Molecular; Nanoparticles / chemistry; Nucleic Acids / chemistry; Solvents / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Effect of C 60 adducts on the dynamic structure of aromatic solvation shells

Chemical Physics Letters, 678, 79–84.

By: J. Peerless n, G. Bowers n, A. Kwansa n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, A. Kwansa n, G. Bowers n & J. Peerless n

author keywords: Fullerenes; Solubility; Molecular dynamics simulations; Structure analysis
Sources: Crossref, ORCID
Added: December 16, 2019

2017 journal article

Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA

Advanced Materials Interfaces, 4(8), 1601168.

By: H. Kim n, B. Farmer n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, B. Farmer n & H. Kim n

Sources: Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2017 journal article

Functional Modification of Silica through Enhanced Adsorption of Elastin-Like Polypeptide Block Copolymers

Biomacromolecules, 19(2), 298–306.

By: L. Li*, N. Li n, Q. Tu*, O. Im*, C. Mo*, W. Han*, W. Fuss n, N. Carroll* ...

co-author countries: United States of America 🇺🇸

Contributors: G. Lopez*, S. Zauscher*, Y. Yingling n, A. Chilkoti*, N. Carroll*, W. Fuss n, W. Han*, C. Mo* ...

MeSH headings : Adsorption; Elastin / chemistry; Micelles; Molecular Dynamics Simulation; Peptide Fragments / chemistry; Protein Precursors / chemistry; Silicon Dioxide / chemistry; Wettability
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Interfacial Mechanical Properties of Graphene on Self-Assembled Monolayers: Experiments and Simulations

ACS Applied Materials & Interfaces, 9(11), 10203–10213.

By: Q. Tu*, H. Kim n, T. Oweida n, Z. Parlak*, Y. Yingling n & S. Zauscher*

co-author countries: United States of America 🇺🇸

Contributors: Q. Tu*, H. Kim n, T. Oweida n, Z. Parlak*, Y. Yingling n & S. Zauscher*

author keywords: graphene; self-assembled monolayer; contact resonance AFM; out-of-plane Young's modulus; molecular dynamics simulation; interfacial water
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Interfacial stability of graphene-based surfaces in water and organic solvents

Journal of Materials Science, 53(8), 5766–5776.

By: H. Kim n, T. Oweida n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, T. Oweida n & H. Kim n

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Macromol. Rapid Commun. 20/2017

Macromolecular Rapid Communications, 38(20).

By: N. Li n, H. Kuang*, W. Fuss n, S. Zauscher*, E. Kokkoli* & Y. Yingling n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 6, 2020

2017 journal article

Physisorption: Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA (Adv. Mater. Interfaces 8/2017)

Advanced Materials Interfaces, 4(8).

By: H. Kim n, B. Farmer n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2017 journal article

Salt Responsive Morphologies of ssDNA-Based Triblock Polyelectrolytes in Semi-Dilute Regime: Effect of Volume Fractions and Polyelectrolyte Length

Macromolecular Rapid Communications, 38(20), 1700422.

By: N. Li n, H. Kuang*, W. Fuss n, S. Zauscher*, E. Kokkoli* & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, E. Kokkoli*, S. Zauscher*, W. Fuss n, H. Kuang* & N. Li n

author keywords: block copolymers; dissipative particle dynamics simulations; polyelectrolytes; responsive morphology; self-assembly; ssDNA
MeSH headings : Cryoelectron Microscopy; DNA, Single-Stranded / chemistry; Hydrophobic and Hydrophilic Interactions; Micelles; Osmolar Concentration; Polyelectrolytes / chemistry; Sodium Chloride / chemistry; Solvents / chemistry
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Template-Guided Assembly of Silk Fibroin on Cellulose Nanofibers for Robust Nanostructures with Ultrafast Water Transport

ACS Nano, 11(12), 12008–12019.

By: R. Xiong*, H. Kim n, S. Zhang*, S. Kim*, V. Korolovych*, R. Ma*, Y. Yingling n, C. Lu*, V. Tsukruk*

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: V. Tsukruk*, C. Lu*, Y. Yingling n, R. Ma*, V. Korolovych*, S. Kim n, S. Zhang*, H. Kim*, R. Xiong*

author keywords: silk fibroin; cellulose nanofiber; ultrathin membrane; flexible nanocomposites; ultrafast permeation
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2016 journal article

A Barley Efflux Transporter Operates in a Na+-Dependent Manner, as Revealed by a Multidisciplinary Platform

Plant Cell, 28(1), 202–218.

By: Y. Nagarajan*, J. Rongala*, S. Luang*, A. Singh n, N. Shadiac*, J. Hayes*, T. Sutton*, M. Gilliham* ...

co-author countries: Australia 🇦🇺 United States of America 🇺🇸

Contributors: Y. Nagarajan*, J. Rongala*, S. Luang*, A. Singh n, N. Shadiac*, J. Hayes*, T. Sutton*, M. Gilliham* ...

MeSH headings : Anions / metabolism; Binding Sites; Borates / metabolism; Cell-Free System; Computer Simulation; Hordeum / metabolism; Lipid Bilayers / metabolism; Liposomes / metabolism; Membrane Transport Proteins / chemistry; Membrane Transport Proteins / metabolism; Models, Molecular; Permeability; Pichia / metabolism; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Folding; Protein Multimerization; Sodium / metabolism; Triticum / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Binding of single stranded nucleic acids to cationic ligand functionalized gold nanoparticles

BIOINTERPHASES, 11(4).

By: J. Nash n, T. Tucker n, W. Therriault n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, W. Therriault n, T. Tucker n & J. Nash n

MeSH headings : Cations / metabolism; Gold / metabolism; Molecular Dynamics Simulation; Nanoparticles / chemistry; Nanoparticles / metabolism; Nucleic Acids / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Bionanocomposites: Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces (Adv. Funct. Mater. 35/2016)

Advanced Functional Materials, 26(35), 6496–6496.

By: A. Grant*, H. Kim n, T. Dupnock n, K. Hu*, Y. Yingling n & V. Tsukruk*

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2016 journal article

Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex

Scientific Reports, 6(1).

By: B. Nixon*, K. Mansouri n, A. Singh n, J. Du*, J. Davis n, J. Lee n, E. Slabaugh n, V. Vandavasi* ...

co-author countries: United States of America 🇺🇸

Contributors: C. Haigler n, Y. Yingling n, A. Roberts*, E. Roberts*, H. O'Neill*, V. Vandavasi*, E. Slabaugh n, J. Lee n ...

MeSH headings : Cellulose / biosynthesis; Cellulose / chemistry; Glucosyltransferases / chemistry; Models, Molecular; Plant Proteins / chemistry; Protein Domains; Protein Folding; Protein Structure, Quaternary
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Design of Potent and Controllable Anticoagulants Using DNA Aptamers and Nanostructures

MOLECULES, 21(2).

By: A. Rangnekar n, J. Nash n, B. Goodfred n, Y. Yingling n & T. LaBean n

co-author countries: United States of America 🇺🇸

Contributors: T. LaBean n, Y. Yingling n, B. Goodfred n, J. Nash n & A. Rangnekar n

author keywords: thrombin; DNA aptamers; anticoagulation; DNA nanotechnology
MeSH headings : Anticoagulants / chemistry; Anticoagulants / pharmacology; Aptamers, Nucleotide / chemistry; Aptamers, Nucleotide / pharmacology; Drug Design; Drug Evaluation, Preclinical; Humans; Molecular Dynamics Simulation; Nanostructures / chemistry; Partial Thromboplastin Time
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Emulsion-Based RIR-MAPLE Deposition of Conjugated Polymers: Primary Solvent Effect and Its Implications on Organic Solar Cell Performance

ACS APPLIED MATERIALS & INTERFACES, 8(30), 19494–19506.

By: W. Ge*, N. Li n, R. McCormick*, E. Lichtenberg*, Y. Yingling n & A. Stiff-Roberts

co-author countries: United States of America 🇺🇸

Contributors: A. Stiff-Roberts, Y. Yingling n, E. Lichtenberg*, R. McCormick*, N. Li n & W. Ge*

author keywords: MAPLE; emulsion target; polymer films; organic solar cells; dissipative particle dynamics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Fluorescence Blinking as an Output Signal for Biosensing

ACS Sensors, 1(11), 1295–1300.

By: B. Roark*, J. Tan*, A. Ivanina*, M. Chandler*, J. Castaneda*, H. Kim n, S. Jawahar*, M. Viard* ...

co-author countries: United States of America 🇺🇸

Contributors: K. Afonin*, M. Jones*, Y. Yingling n, K. Wustholz*, S. Talic*, M. Viard*, S. Jawahar*, H. Kim n ...

author keywords: fluorescence blinking; quantum dots; lattices; biosensors; K-ras; nucleic acid engineering; strand displacement
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2016 journal article

LCST Behavior is Manifested in a Single Molecule: Elastin-Like polypeptide (VPGVG)n

BIOMACROMOLECULES, 17(1), 111–118.

By: B. Zhao n, N. Li n, Y. Yingling n & C. Hall n

co-author countries: United States of America 🇺🇸

Contributors: C. Hall n, Y. Yingling n, N. Li n & B. Zhao n

MeSH headings : Cold Temperature; Elastin / chemistry; Hydrogen Bonding; Oligopeptides / chemistry; Peptides / chemistry; Pharmaceutical Solutions / chemistry; Transition Temperature; Water / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Molecular Dynamics Simulations of Nano-biomaterials

Encyclopedia of Nanotechnology, pp. 2260–2269.

By: M. Pasquinelli & Y. Yingling*

Source: ORCID
Added: December 6, 2018

2016 journal article

Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis

Cellulose, 23(1), 145–161.

By: L. Sethaphong n, J. Davis n, E. Slabaugh n, A. Singh n, C. Haigler n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, C. Haigler n, A. Singh n, E. Slabaugh n, J. Davis n & L. Sethaphong n

author keywords: Arabidopsis thaliana; Cellulose synthesis; Computational protein structure prediction; Isoform specificity; Mutant complementation
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Sequence dependent interaction of single stranded DNA with graphitic flakes: atomistic molecular dynamics simulations

MRS Advances, 1(25), 1883–1889.

By: H. Kim n, S. Huang n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, S. Huang n & H. Kim n

Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2016 journal article

Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces

ADVANCED FUNCTIONAL MATERIALS, 26(35), 6380–6392.

By: A. Grant*, H. Kim n, T. Dupnock n, K. Hu*, Y. Yingling n & V. Tsukruk*

co-author countries: United States of America 🇺🇸

Contributors: A. Grant*, H. Kim n, T. Dupnock n, K. Hu*, Y. Yingling n & V. Tsukruk*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

The effect of imidazolium cations on the structure and activity of the Candida antarctica Lipase B enzyme in ionic liquids

Physical Chemistry Chemical Physics, 18(32), 22062–22069.

By: H. Kim n, D. Eom*, Y. Koo* & Y. Yingling n

co-author countries: Korea (Republic of) 🇰🇷 United States of America 🇺🇸

Contributors: Y. Yingling n, Y. Koo*, D. Eom* & H. Kim n

MeSH headings : Candida / enzymology; Catalysis; Cations; Fungal Proteins / metabolism; Hydrophobic and Hydrophilic Interactions; Lipase / metabolism; Molecular Dynamics Simulation
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2016 journal article

When in silico meets in vitro: Molecular basis of function of an anion-permeable efflux transporter from barley (Hordeum vulgare L.)

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/382040/

Contributors: Y. Yingling, M. Hrmova, Y. Nagarajan & A. Singh

Source: ORCID
Added: January 6, 2020

2015 journal article

An Implicit Solvent Ionic Strength (ISIS) Method to Model Polyelectrolyte Systems with Dissipative Particle Dynamics

MACROMOLECULAR THEORY AND SIMULATIONS, 24(1), 7–12.

By: N. Li n, W. Fuss n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, W. Fuss n & N. Li n

author keywords: block copolymer; dissipative particle dynamics; polyelectrolyte; solvent ionic strength; self-assembly
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

CELLULOSE SYNTHASE INTERACTIVE1 Is Required for Fast Recycling of Cellulose Synthase Complexes to the Plasma Membrane in Arabidopsis

The Plant Cell, 27(10), tpc.15.00442.

By: L. Lei*, A. Singh n, L. Bashline*, S. Li*, Y. Yingling n & Y. Gu*

co-author countries: United States of America 🇺🇸

Contributors: L. Lei*, A. Singh n, L. Bashline*, S. Li*, Y. Yingling n & Y. Gu*

MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis / ultrastructure; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Carrier Proteins / genetics; Carrier Proteins / metabolism; Cell Membrane / enzymology; Cellulose / metabolism; Clathrin / metabolism; Endocytosis; Genes, Reporter; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Microtubules / metabolism; Models, Molecular; Protein Transport; Seedlings / genetics; Seedlings / physiology; Seedlings / ultrastructure
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics

ACS NANO, 9(12), 12374–12382.

By: J. Nash n, A. Singh n, N. Li n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, N. Li n, A. Singh n & J. Nash n

author keywords: gold nanoparticles; DNA compaction; RNA compaction; molecular dynamics simulations; nanoparticle binding; nucleosome
MeSH headings : Gold / chemistry; Histones / chemistry; Metal Nanoparticles / chemistry; Molecular Dynamics Simulation; Nucleic Acids / chemistry; Nucleic Acids / metabolism; Nucleic Acids / ultrastructure
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Cover Picture: Macromol. Theory Simul. 1∕2015

Macromolecular Theory and Simulations, 24(1), 1–1.

By: N. Li n, W. Fuss n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2015 journal article

Effect of NP shape and ligand flexibility in the design of nucleic acid wrapping NPs

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057470/

Contributors: Y. Yingling, N. Li, A. Singh & J. Nash

Source: ORCID
Added: January 6, 2020

2015 journal article

Effect of surface polarity on physisorption of biomolecules: Molecular modeling

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057471/

Contributors: Y. Yingling & H. Kim

Source: ORCID
Added: January 6, 2020

2015 journal article

Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility

JOURNAL OF PHYSICAL CHEMISTRY B, 119(49), 15344–15352.

By: J. Peerless n, G. Bowers n, A. Kwansa n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, A. Kwansa n, G. Bowers n & J. Peerless n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Gold nanoparticle-nucleic acid modeling using GPU-accelerated molecular dynamics

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057466/

Contributors: Y. Yingling, A. Kwansa & J. Nash

Source: ORCID
Added: January 6, 2020

2015 journal article

How Cellulose Elongates-A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA

JOURNAL OF PHYSICAL CHEMISTRY B, 119(22), 6525–6535.

By: H. Yang*, J. Zimmer*, Y. Yingling n & J. Kubicki*

co-author countries: United States of America 🇺🇸

Contributors: J. Kubicki*, Y. Yingling n, J. Zimmer* & H. Yang*

MeSH headings : Biocatalysis; Carbohydrate Conformation; Cellulose / chemistry; Cellulose / metabolism; Enzyme Activation; Glucose / chemistry; Glucose / metabolism; Glucosyltransferases / chemistry; Glucosyltransferases / metabolism; Glycosylation; Molecular Dynamics Simulation; Polymerization; Protein Conformation; Protons; Quantum Theory; Rhodobacter / enzymology; Uridine Diphosphate / chemistry; Uridine Diphosphate / metabolism; Water / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 review

Microtubules and cellulose biosynthesis: the emergence of new players

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 28, 76–82.

By: S. Li*, L. Lei*, Y. Yingling n & Y. Gu*

co-author countries: United States of America 🇺🇸

Contributors: S. Li*, L. Lei*, Y. Yingling n & Y. Gu*

MeSH headings : Cell Membrane / metabolism; Cellulose / biosynthesis; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Microfibrils / metabolism; Microtubules / metabolism; Plant Physiological Phenomena; Plant Proteins / genetics; Plant Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Molecular description of LCST behavior of elastin-like peptides poly(VPGVG) and poly(VGPVG)

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057468/

Contributors: Y. Yingling & N. Li

Source: ORCID
Added: January 6, 2020

2015 journal article

Morphological and rheological properties of aqueous micellar network of polyelectrolyte block copolymers

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057469/

Contributors: Y. Yingling, W. Fuss & N. Li

Source: ORCID
Added: January 6, 2020

2015 journal article

Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles

SOFT MATTER, 11(42), 8236–8245.

By: N. Li n, W. Fuss n, L. Tang*, R. Gu*, A. Chilkoti*, S. Zauscher*, Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, S. Zauscher*, A. Chilkoti*, R. Gu*, L. Tang*, W. Fuss n, N. Li n

MeSH headings : Computer Simulation; DNA, Single-Stranded / chemistry; Electrolytes / chemistry; Micelles; Models, Chemical; Polymers / chemistry; Solvents / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Simulations of the self-assembly of polyelectrolyte block copolymers using dissipative particle dynamics with an implicit solvent ionic strength (ISIS) method

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057467/

Contributors: Y. Yingling, W. Fuss & N. Li

Source: ORCID
Added: January 6, 2020

2014 journal article

Cellulose synthases: new insights from crystallography and modeling

Trends in Plant Science, 19(2), 99–106.

By: E. Slabaugh n, J. Davis n, C. Haigler n, Y. Yingling n & J. Zimmer*

co-author countries: United States of America 🇺🇸

Contributors: J. Zimmer*, Y. Yingling n, C. Haigler n, J. Davis n & E. Slabaugh n

MeSH headings : Catalytic Domain; Crystallography; Glucosyltransferases / chemistry; Models, Molecular; Plant Proteins / chemistry
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2014 journal article

Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase

Journal of Experimental Botany, 65(22), 6645–6653.

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, C. Haigler n, C. Anderson*, J. Amick n, C. Xiao*, L. Sethaphong n, E. Slabaugh n

author keywords: Cellulose biosynthesis; CESA; genetic complementation; protein structural modelling; rsw1 mutant; transmembrane helix
MeSH headings : Amino Acid Sequence; Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Biocatalysis; Computational Biology; Glucosyltransferases / chemistry; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Molecular Sequence Data; Mutant Proteins / metabolism; Mutation; Phenotype; Protein Structure, Secondary; Recombinant Fusion Proteins / metabolism; Sequence Alignment; Structure-Activity Relationship
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2014 journal article

Enzymatic Polymerization of High Molecular Weight DNA Amphiphiles That Self-Assemble into Star-Like Micelles

ADVANCED MATERIALS, 26(19), 3050–3054.

By: L. Tang*, V. Tjong*, N. Li n, Y. Yingling n, A. Chilkoti* & S. Zauscher*

co-author countries: United States of America 🇺🇸

Contributors: L. Tang*, V. Tjong*, N. Li n, Y. Yingling n, A. Chilkoti* & S. Zauscher*

author keywords: polynucleotides; polymerase; self-assembly; AFM; dissipative particle dynamics
MeSH headings : Biocatalysis; Boron Compounds / chemistry; DNA, Single-Stranded / chemistry; DNA, Single-Stranded / metabolism; Enzymes / metabolism; Exodeoxyribonucleases / metabolism; Micelles; Microscopy, Atomic Force; Nanostructures / chemistry; Polymerization; Polynucleotides / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Molecular Description of the LCST Behavior of an Elastin-Like Polypeptide

BIOMACROMOLECULES, 15(10), 3522–3530.

By: N. Li n, F. Quiroz*, C. Hall*, A. Chilkoti* & Y. Yingling*

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling*, A. Chilkoti*, C. Hall*, F. Quiroz* & N. Li n

MeSH headings : Cold Temperature; Elastin / chemistry; Hydrophobic and Hydrophilic Interactions; Oligopeptides / chemistry; Peptides / chemistry; Protein Structure, Secondary; Solutions / chemistry; Solvents / chemistry; Transition Temperature; Water / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface

Biophysical Journal.

Contributors: Y. Yingling n & H. Kim n

Source: ORCID
Added: January 6, 2020

2014 journal article

Progress in molecular modelling of DNA materials

MOLECULAR SIMULATION, 40(10-11), 777–783.

By: N. Li n, H. Kim n, J. Nash n, M. Lim n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, M. Lim n, J. Nash n, H. Kim n & N. Li n

author keywords: molecular modelling; DNA materials; computer simulations
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study

PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 16(7), 2944–2953.

By: H. Kim n, S. Ha*, L. Sethaphong n, Y. Koo* & Y. Yingling n

co-author countries: Korea (Republic of) 🇰🇷 United States of America 🇺🇸

Contributors: H. Kim n, S. Ha*, L. Sethaphong n, Y. Koo* & Y. Yingling n

MeSH headings : 1-Butanol / chemistry; Esterification; Fungal Proteins / chemistry; Fungal Proteins / metabolism; Ionic Liquids / chemistry; Lipase / chemistry; Lipase / metabolism; Molecular Dynamics Simulation; Protein Conformation; Solvents / chemistry; Vinyl Compounds / chemistry; Water / chemistry; tert-Butyl Alcohol / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Correlating fullerene diffusion with the polythiophene morphology: molecular dynamics simulations

SOFT MATTER, 9(42), 10048–10055.

By: R. Pani n, B. Bond n, G. Krishnan n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, G. Krishnan n, B. Bond n & R. Pani n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Modeling polymer/biopolymer and nanoparticle interactions: Prediction of materials morphology

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057478/

Contributors: Y. Yingling

Source: ORCID
Added: January 6, 2020

2013 journal article

Tertiary model of a plant cellulose synthase

Proceedings of the National Academy of Sciences, 110(18), 7512–7517.

By: L. Sethaphong*, C. Haigler n, J. Kubicki*, J. Zimmer*, D. Bonetta*, S. DeBolt*, Y. Yingling*

co-author countries: Australia 🇦🇺 Canada 🇨🇦 Japan 🇯🇵 United States of America 🇺🇸

Contributors: Y. Yingling*, S. DeBolt*, D. Bonetta*, J. Zimmer*, J. Kubicki*, C. Haigler n, L. Sethaphong*

author keywords: rosette cellulose synthase complex; molecular modeling; protein structure prediction; GlycosylTransferase Family 2; beta-1,4-glucan polymerization
MeSH headings : Arabidopsis / enzymology; Bacteria / enzymology; Computational Biology; Cytosol / enzymology; Glucosyltransferases / chemistry; Glucosyltransferases / genetics; Gossypium / enzymology; Models, Molecular; Mutation / genetics; Phenotype; Protein Structure, Quaternary; Protein Structure, Secondary; Protein Structure, Tertiary
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 journal article

Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations

Biophysical Journal, 104(2), 29a.

By: A. Singh n, N. Li n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, N. Li n & A. Singh n

Source: ORCID
Added: January 6, 2020

2013 conference paper

X3DBio2: A visual analysis tool for biomolecular structure comparison

In P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, & C. G. Healey (Eds.), Visualization and Data Analysis 2013 (Vol. 8654).

By: H. Yi*, S. Thakur*, L. Sethaphong n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Ed(s): P. Wong, D. Kao, M. Hao, C. Chen & C. Healey

Event: IS&T/SPIE Electronic Imaging

author keywords: Molecular structure comparison; Molecular visualization; Interactive exploration; Protein and nucleic acids; Sequence alignment; Structure superposition; Quaternion map; Contact map; Ramachandran plot
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Effect of solvent on the interfacial properties between functionalized nanoparticles and polymers

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057488/

Contributors: Y. Yingling & R. Pani

Source: ORCID
Added: January 6, 2020

2012 journal article

Effect of surface immobilization on the DNA structure and its mechanical properties

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057502/

Contributors: Y. Yingling, H. Eksiri & A. Singh

Source: ORCID
Added: January 6, 2020

2012 journal article

Gold Nanoparticles: Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation (Adv. Mater. 31/2012)

Advanced Materials, 24(31), 4221–4221.

By: J. Railsback n, A. Singh n, R. Pearce n, T. McKnight*, R. Collazo n, Z. Sitar n, Y. Yingling n, A. Melechko n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2012 journal article

Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity

Biophysical Journal.

Contributors: Y. Yingling n, N. Li n & A. Singh n

Source: ORCID
Added: January 6, 2020

2012 chapter

Molecular dynamics simulations of nano-bio materials

In B. Bhushan (Ed.), Encyclopedia of Nanotechnology (pp. 1454–1463).

By: M. Pasquinelli n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Ed(s): B. Bhushan

Sources: NC State University Libraries, ORCID
Added: January 14, 2021

2012 journal article

Role of Solvent and Dendritic Architecture on the Redox Core Encapsulation

JOURNAL OF PHYSICAL CHEMISTRY A, 116(28), 7593–7599.

By: R. Pani n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: R. Pani n & Y. Yingling n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations

Biophysical Journal.

Contributors: Y. Yingling n, L. Sethaphong n & A. Singh n

Source: ORCID
Added: January 6, 2020

2012 journal article

The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study

MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS, 32(8), 2583–2588.

By: A. Marlowe n, A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: A. Marlowe n, A. Singh n & Y. Yingling n

author keywords: Collagen fibril; Molecular dynamics simulations; Point mutations; Osteogenesis Imperfecta; Mechanical properties
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids

JOURNAL OF MOLECULAR LIQUIDS, 166, 25–30.

By: H. Kim*, R. Pani n, S. Ha*, Y. Koo* & Y. Yingling n

co-author countries: Korea (Republic of) 🇰🇷 United States of America 🇺🇸

Contributors: Y. Yingling n, Y. Koo*, S. Ha*, R. Pani n & H. Kim*

author keywords: Ionic liquids; Molecular dynamics simulation; Hydrogen bonding; Glucose solubility; Water interactions
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Tuning DNA structure and compaction with gold nanoparticles

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057484/

Contributors: Y. Yingling

Source: ORCID
Added: January 6, 2020

2012 journal article

Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation

ADVANCED MATERIALS, 24(31), 4261-+.

By: J. Railsback n, A. Singh n, R. Pearce n, T. McKnight*, R. Collazo n, Z. Sitar n, Y. Yingling n, A. Melechko n

co-author countries: United States of America 🇺🇸

Contributors: A. Melechko n, Y. Yingling n, Z. Sitar n, R. Collazo n, T. McKnight*, R. Pearce n, A. Singh n, J. Railsback n

author keywords: gold nanoparticles; DNA compaction; DNA denaturing; cationic ligands; DNA-nanoparticle interactions
MeSH headings : Cations / chemistry; DNA / chemistry; Gold / chemistry; Molecular Dynamics Simulation; Nanoparticles / chemistry; Nucleic Acid Conformation; Nucleic Acid Denaturation; Spectrophotometry, Ultraviolet
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 article

X3DBio1: A Visual Analysis Tool for Biomolecular Structure Exploration

(P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, R. Kosara, M. A. Livingston, … I. Roberts, Eds.). VISUALIZATION AND DATA ANALYSIS 2012, Vol. 8294.

By: H. Yi, A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Ed(s): P. Wong, D. Kao, M. Hao, C. Chen, R. Kosara, M. Livingston, J. Park, I. Roberts

author keywords: molecular visualization; visual analytics; interactive exploration; protein structure; contact map
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study

Biophysical Journal.

Contributors: Y. Yingling* & A. Marlowe

Source: ORCID
Added: January 6, 2020

2011 journal article

Computational Prediction of Cellulose Synthase Protein Structure

Biophysical Journal.

Contributors: Y. Yingling*, L. Sethaphong & A. Vargas

Source: ORCID
Added: January 6, 2020

2011 journal article

Interactions of Cations with RNA Loop-Loop Complexes

BIOPHYSICAL JOURNAL, 101(3), 727–735.

By: A. Singh n, L. Sethaphong n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: A. Singh n, L. Sethaphong n & Y. Yingling n

MeSH headings : Base Pairing; Base Sequence; Cations / metabolism; Metals / metabolism; Molecular Dynamics Simulation; Nucleic Acid Conformation; RNA / chemistry; RNA / genetics; RNA / metabolism; Solvents / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA

Biophysical Journal.

Contributors: Y. Yingling* & A. Singh

Source: ORCID
Added: January 6, 2020

2011 journal article

Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding

Biophysical Journal.

Contributors: Y. Yingling* & L. Sethaphong

Source: ORCID
Added: January 6, 2020

2011 journal article

Nucleic acid helical conformation and sequence effects on cationic binding

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057504/

Contributors: Y. Yingling & L. Sethaphong

Source: ORCID
Added: January 6, 2020

2011 journal article

Simulations of Stretching Single Stranded DNA

MRS Proceedings, 1301.

By: A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2011 article

Theoretical Perspective on Properties of DNA-Functionalized Surfaces

Singh, A., Eksiri, H., & Yingling, Y. G. (2011, November 15). JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS, Vol. 49, pp. 1563–1568.

By: A. Singh n, H. Eksiri n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, H. Eksiri n & A. Singh n

author keywords: DNA-functionalized surface; modeling; nanotechnology; simulations; theory
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Cationic Sequence Dependence in Nucleic Acid Structures

Biophysical Journal.

Contributors: Y. Yingling n, A. Marlowe n, A. Singh n & L. Sethaphong n

Source: ORCID
Added: January 6, 2020

2010 journal article

Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films

LANGMUIR, 26(22), 17339–17347.

By: A. Singh n, S. Snyder n, L. Lee*, A. Johnston*, F. Caruso* & Y. Yingling n

co-author countries: Australia 🇦🇺 United States of America 🇺🇸

Contributors: Y. Yingling n, F. Caruso*, A. Johnston*, L. Lee*, S. Snyder n & A. Singh n

MeSH headings : Base Sequence; DNA / chemistry; DNA / genetics; Gold / chemistry; Metal Nanoparticles / chemistry; Molecular Dynamics Simulation; Nanotechnology / methods; Nucleic Acid Conformation; Nucleic Acid Hybridization; Oligodeoxyribonucleotides / chemistry; Oligodeoxyribonucleotides / genetics; Poly T / chemistry; Quartz Crystal Microbalance Techniques
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Molecular Dynamics and Distribution of Ions in Kissing Loop

Biophysical Journal, 98(3), 264a.

By: A. Singh n, L. Sethaphong n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, L. Sethaphong n & A. Singh n

Source: ORCID
Added: January 6, 2020

2010 journal article

The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations

Biophysical Journal, 98(3), 568a.

By: A. Marlowe n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n & A. Marlowe n

Source: ORCID
Added: January 6, 2020

2010 journal article

The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution

JOURNAL OF PHYSICAL CHEMISTRY C, 114(12), 5506–5512.

By: L. Sethaphong n, A. Singh n, A. Marlowe n & Y. Yingling n

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling n, A. Marlowe n, A. Singh n & L. Sethaphong n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Computational Discovery Of The Electronegative Channel In RNA Loop-loop Interactions

Biophysical Journal, 96(3), 83a.

By: A. Semichaevsky n, A. Singh n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Source: Crossref
Added: September 9, 2020

2009 journal article

Computational Discovery Of The Electronegative Channel In RNA Looploop Interactions

Biophysical Journal. https://publons.com/publon/28057498/

Contributors: Y. Yingling, A. Singh & A. Semichaevsky

Source: ORCID
Added: January 6, 2020

2009 journal article

Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV)

Biophysical Journal, 96(3), 19a–20a.

By: W. Kasprzak*, Y. Yingling n, A. Simon* & B. Shapiro

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 6, 2020

2008 journal article

COMP 215-Explicit molecular dynamics simulations of kissing loop motif formed between TAR-RNA element of HIV-1 and aptamer

Abstracts of Papers of the American Chemical Society. https://publons.com/publon/28057500/

Contributors: Y. Yingling & A. Singh

Source: ORCID
Added: January 6, 2020

2008 journal article

Comparing Ion Distributions around RNA and DNA Helical and Loop-loop Motifs

MRS Proceedings, 1130.

By: A. Semichaevsky n, A. Marlowe n & Y. Yingling n

co-author countries: United States of America 🇺🇸
Sources: ORCID, Crossref
Added: January 6, 2020

2008 chapter

Protocols for the In Silico Design of RNA Nanostructures

In Methods in Molecular Biology™ (pp. 93–115).

By: B. Shapiro, E. Bindewald, W. Kasprzak & Y. Yingling*

Contributors: Y. Yingling*

MeSH headings : Computational Biology / methods; Databases, Genetic; Nanoparticles / chemistry; Nanotechnology / methods; Nucleic Acid Conformation; RNA / chemistry
Sources: ORCID, Crossref
Added: January 6, 2020

2008 journal article

Structural Domains within the 3' Untranslated Region of Turnip Crinkle Virus

Journal of Virology, 82(17), 8706–8720.

By: J. McCormack*, X. Yuan*, Y. Yingling*, W. Kasprzak*, R. Zamora*, B. Shapiro*, A. Simon*

co-author countries: United States of America 🇺🇸

Contributors: J. McCormack*, X. Yuan*, Y. Yingling*, W. Kasprzak*, R. Zamora*, B. Shapiro*, A. Simon*

MeSH headings : 3' Untranslated Regions / chemistry; 3' Untranslated Regions / genetics; Algorithms; Base Pair Mismatch; Base Sequence; Carmovirus / chemistry; Carmovirus / genetics; Computer Simulation; Genes, Viral; Models, Molecular; Molecular Sequence Data; Mutation; Nucleic Acid Conformation; Plasmids; Protein Structure, Tertiary; RNA / chemistry; RNA, Satellite / chemistry; RNA, Viral / biosynthesis; RNA, Viral / chemistry; RNA, Viral / genetics; RNA, Viral / isolation & purification; Virus Replication
Sources: ORCID, Crossref
Added: January 6, 2020

2008 journal article

The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits

RNA, 14(11), 2379–2393.

By: V. Stupina*, A. Meskauskas, J. McCormack, Y. Yingling*, B. Shapiro, J. Dinman, A. Simon

co-author countries: United States of America 🇺🇸

Contributors: A. Simon, J. Dinman, B. Shapiro, Y. Yingling*, J. McCormack, A. Meskauskas, V. Stupina*

author keywords: cap-independent translation; internal ribosome entry site; Turnip crinkle virus; translational enhancer
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Bridging the gap in RNA structure prediction

Current Opinion in Structural Biology, 17(2), 157–165.

By: B. Shapiro*, Y. Yingling*, W. Kasprzak* & E. Bindewald*

co-author countries: United States of America 🇺🇸

Contributors: E. Bindewald*, W. Kasprzak*, Y. Yingling* & B. Shapiro*

MeSH headings : Algorithms; Base Sequence; Computer Simulation; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; RNA / chemistry; RNA / genetics; Sequence Alignment; Software; Thermodynamics
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational Design of an RNA Hexagonal Nanoring and an RNA Nanotube

Nano Letters, 7(8), 2328–2334.

By: Y. Yingling* & B. Shapiro*

co-author countries: United States of America 🇺🇸

Contributors: B. Shapiro* & Y. Yingling*

MeSH headings : Computer Simulation; Crystallization / methods; Drug Carriers / chemistry; Drug Design; Macromolecular Substances / chemistry; Materials Testing; Models, Chemical; Models, Molecular; Nanostructures / chemistry; Nanostructures / ultrastructure; Nanotechnology / methods; Nucleic Acid Conformation; Particle Size; RNA / chemistry; RNA / ultrastructure; Surface Properties
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational investigation into the mechanisms of UV ablation of poly(methyl methacrylate)

Applied Surface Science, 253(15), 6382–6385.

By: M. Prasad, P. Conforti, B. Garrison & Y. Yingling*

Contributors: Y. Yingling*, B. Garrison, P. Conforti & M. Prasad

author keywords: computational investigation; mechanisms of UV ablation; poly(methyl methacrylate)
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational studies of ultraviolet ablation of poly(methyl methacrylate)

Journal of Physics: Conference Series, 59, 322–327.

By: P. Conforti*, Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison*, Y. Yingling* & P. Conforti*

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material

Applied Surface Science, 253(15), 6377–6381.

By: Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison* & Y. Yingling*

author keywords: laser ablation; simulations; coarse-grained; photochemistry
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

Nucleic Acids Research, 36(suppl_1), D392–D397.

By: E. Bindewald, R. Hayes, Y. Yingling*, W. Kasprzak & B. Shapiro

Contributors: B. Shapiro, W. Kasprzak, Y. Yingling*, R. Hayes & E. Bindewald

MeSH headings : Algorithms; Databases, Nucleic Acid; Internet; Nanostructures / chemistry; Nanotechnology; Nucleic Acid Conformation; RNA / chemistry; Sequence Analysis, RNA; User-Computer Interface
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

The Impact of Dyskeratosis Congenita Mutations on the Structure and Dynamics of the Human Telomerase RNA Pseudoknot Domain

Journal of Biomolecular Structure and Dynamics, 24(4), 303–319.

By: Y. Yingling* & B. Shapiro*

co-author countries: United States of America 🇺🇸

Contributors: B. Shapiro* & Y. Yingling*

author keywords: dyskeratosis congenita; telomerase; RNA; molecular modeling; and pseudoknot
MeSH headings : Base Sequence; Dyskeratosis Congenita / genetics; Humans; Kinetics; Models, Molecular; Molecular Sequence Data; Mutation; Nucleic Acid Conformation; Nucleic Acid Denaturation; RNA / chemistry; RNA / genetics; Software; Telomerase / genetics; Thermodynamics
Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Theoretical investigation of formation and properties of RNA nanoparticles

Biophysical Journal. https://publons.com/publon/11561857/

Contributors: Y. Yingling

Source: ORCID
Added: January 6, 2020

2006 journal article

A unique electromagnetic photon field using Feynman's electron characteristics and Maxwell's equations

Journal of Computational and Theoretical Nanoscience.

Contributors: D. Grimes & C. Grimes

author keywords: photon; emission; photoelectron; photon field; radiation; superluminal speeds
Source: ORCID
Added: January 6, 2020

2006 journal article

Structural and Dynamical Classification of RNA Single-Base Bulges for Nanostructure Design

Journal of Computational and Theoretical Nanoscience, 3(1), 63–77.

By: W. Hastings, Y. Yingling, G. Chirikjian & B. Shapiro

author keywords: protein NanoActuator; NanoMotor; molecular dynamics; TMD
Sources: Web Of Science, ORCID
Added: January 14, 2021

2006 journal article

The Prediction of the Wild-type Telomerase RNA Pseudoknot Structure and the Pivotal Role of a Bulge in its Formation

Journal of Molecular Graphics and Modelling, 25(2), 261–274.

By: Y. Yingling* & B. Shapiro

Contributors: Y. Yingling* & B. Shapiro

author keywords: telomerase; RNA; molecular dynamics; theoretical prediction; pseudoknot
MeSH headings : Base Pairing / genetics; Base Sequence; Computer Simulation; Humans; Hydrogen Bonding; Models, Molecular; Nucleic Acid Conformation; RNA / chemistry; RNA / genetics; Telomerase / chemistry; Telomerase / genetics; Thermodynamics
Sources: ORCID, Web Of Science
Added: January 6, 2020

2005 journal article

Coarse-Grained Model of the Interaction of Light with Polymeric Material: Onset of Ablation

The Journal of Physical Chemistry B, 109(34), 16482–16489.

By: Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: Y. Yingling* & B. Garrison*

MeSH headings : Light; Models, Molecular; Molecular Conformation; Photochemistry; Polymethyl Methacrylate / chemistry; Thermodynamics; Vibration
Sources: ORCID, Crossref
Added: January 6, 2020

2005 journal article

Dynamic Behavior of the Telomerase RNA Hairpin Structure and its Relationship to Dyskeratosis Congenita

Journal of Molecular Biology, 348(1), 27–42.

By: Y. Yingling* & B. Shapiro

Contributors: B. Shapiro & Y. Yingling*

author keywords: telomerase; RNA; molecular dynamics simulations; dyskeratosis congenita; pseudoknot
MeSH headings : Base Pairing; Base Sequence; Dyskeratosis Congenita / genetics; Humans; Hydrogen Bonding; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Protein Structure, Secondary; RNA / chemistry; RNA / genetics; RNA / metabolism; Telomerase / chemistry; Telomerase / genetics; Telomerase / metabolism
Sources: ORCID, Crossref
Added: January 6, 2020

2004 journal article

Coarse-Grained Chemical Reaction Model

The Journal of Physical Chemistry B, 108(6), 1815–1821.

By: Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison* & Y. Yingling*

Sources: ORCID, Web Of Science
Added: January 6, 2020

2004 journal article

Theoretical investigation of laser pulse width dependence in a thermal confinement regime

Applied Physics A, 79(4-6), 757–759.

By: Y. Yingling*, P. Conforti* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison*, P. Conforti* & Y. Yingling*

Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Big molecule ejection—SIMS vs. MALDI

Applied Surface Science, 203-204, 69–71.

By: B. Garrison*, A. Delcorte*, L. Zhigilei*, T. Itina*, K. Krantzman*, Y. Yingling*, C. McQuaw*, E. Smiley*, N. Winograd*

co-author countries: Belgium 🇧🇪 France 🇫🇷 United States of America 🇺🇸

Contributors: N. Winograd*, E. Smiley*, C. McQuaw*, Y. Yingling*, K. Krantzman*, T. Itina*, L. Zhigilei*, A. Delcorte*, B. Garrison*

author keywords: MALDI; organic SIMS; molecular dynamics; computer simulation
Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Computer Simulations of Laser Ablation of Molecular Substrates

ChemInform, 34(18).

By: L. Zhigilei*, E. Leveugle*, B. Garrison*, Y. Yingling* & M. Zeifman*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 6, 2020

2003 journal article

Computer Simulations of Laser Ablation of Molecular Substrates

Chemical Reviews, 103(2), 321–348.

By: L. Zhigilei*, E. Leveugle*, B. Garrison, Y. Yingling* & M. Zeifman*

co-author countries: United States of America 🇺🇸

Contributors: M. Zeifman*, Y. Yingling*, B. Garrison, E. Leveugle* & L. Zhigilei*

Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Molecular dynamics simulations of matrix-assisted laser desorption - connections to experiment

International Journal of Mass Spectrometry, 226(1), 85–106.

By: L. Zhigilei*, Y. Yingling*, T. Itina*, T. Schoolcraft* & B. Garrison*

co-author countries: France 🇫🇷 United States of America 🇺🇸

Contributors: B. Garrison*, T. Schoolcraft*, T. Itina*, Y. Yingling* & L. Zhigilei*

author keywords: ablation; MALDI; molecular dynamics
Sources: ORCID, Web Of Science
Added: January 6, 2020

2003 journal article

Photochemical ablation of organic solids

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 202, 188–194.

By: Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison* & Y. Yingling*

author keywords: molecular dynamics simulations; laser ablation; photochemical fragmentation; photochemical processes
Sources: ORCID, Crossref
Added: January 6, 2020

2002 journal article

Photochemical induced effects in material ejection in laser ablation

Chemical Physics Letters, 364(3-4), 237–243.

By: Y. Yingling* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison* & Y. Yingling*

Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

Laser ablation of bicomponent systems: A probe of molecular ejection mechanisms

Applied Physics Letters, 78(11), 1631–1633.

By: Y. Yingling*, L. Zhigilei*, B. Garrison*, A. Koubenakis*, J. Labrakis* & S. Georgiou*

co-author countries: Greece 🇬🇷 United States of America 🇺🇸

Contributors: S. Georgiou*, J. Labrakis*, A. Koubenakis*, B. Garrison*, L. Zhigilei* & Y. Yingling*

Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

Photochemical fragmentation processes in laser ablation of organic solids

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 180(1-4), 171–175.

By: Y. Yingling*, L. Zhigilei* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison*, L. Zhigilei* & Y. Yingling*

author keywords: molecular dynamics simulations; laser ablation; photofragmentation
Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

The role of the photochemical fragmentation in laser ablation: a molecular dynamics study

Journal of Photochemistry and Photobiology A: Chemistry, 145(3), 173–181.

By: Y. Yingling*, L. Zhigilei* & B. Garrison*

co-author countries: United States of America 🇺🇸

Contributors: B. Garrison*, L. Zhigilei* & Y. Yingling*

author keywords: photochemical fragmentation; laser ablation; molecular dynamics
Sources: ORCID, Crossref
Added: January 6, 2020

journal article

New polyvalent RNA nanoparticle comprises RNA motifs as building blocks, useful in a drug delivery composition for treating or preventing a disease or disorder, e.g. AIDS, Alzheimer's disease, anemia, cancer, hypertension, or obesity

https://publons.com/publon/15543588/

Contributors: Y. Yingling

Source: ORCID
Added: January 6, 2020

journal article

New polyvalent RNA nanoparticle, useful for treating or preventing a disease or disorder, e.g. adenoma, aging, AIDS, alopecia, Alzheimer's disease, or anemia

https://publons.com/publon/15543587/

Contributors: Y. Yingling

Source: ORCID
Added: January 6, 2020

Employment

Updated: April 4th, 2022 10:08

2007 - present

NC State University Raleigh, NC, US
Distinguished Professor Materials Science and Engineering

2004 - 2007

National Cancer Institute Frederick, MD, US
CRTA Fellow Center for Cancer Research Nanobiology Program

2002 - 2004

Pennsylvania State University University Park, PA, US
Postdoctoral Research Associate Chemistry

Education

Updated: December 10th, 2019 21:21

1997 - 2002

Pennsylvania State University University Park, PA, US
PhD Materials

1990 - 1996

Saint Petersburg State Polytechnical University Saint Petersburg, RU
B.S. Computer Science and Engineering

Funding History

Funding history based on the linked ORCID record. Updated: February 25th, 2018 12:01

grant August 1, 2017 - July 31, 2020
Collaborative Research: Processing Films from Multi-Functional Polymer Dispersion Blends
Directorate for Engineering
grant July 15, 2014 - June 30, 2018
Collaborative Research: Supramolecular Materials by Nucleic Acid Block Copolymer Self-Assembly
Directorate for Mathematical & Physical Sciences
grant July 15, 2014 - June 30, 2017
Collaborative Research: Supramolecular Materials by Nucleic Acid Block Copolymer Self-Assembly
National Science Foundation
grant July 1, 2014 - June 30, 2018
Confinement, Dynamics, and Orientation of DNA at Nano-interfaces
Directorate for Engineering
grant July 1, 2014 - June 30, 2017
Confinement, Dynamics, and Orientation of DNA at Nano-interfaces
National Science Foundation
grant September 1, 2013 - May 31, 2014
Modeling and Theory-Driven Design of Soft Materials
Directorate for Mathematical & Physical Sciences
grant September 1, 2013 - May 31, 2014
Modeling and Theory-Driven Design of Soft Materials
National Science Foundation
grant June 1, 2012 - June 30, 2018
Texas State University PREM: Center on Interfaces in Materials. A Partnership with the Research Triangle MRSEC
Directorate for Mathematical & Physical Sciences
grant June 1, 2012 - May 31, 2017
Texas State University PREM: Center on Interfaces in Materials. A Partnership with the Research Triangle MRSEC
National Science Foundation
grant February 15, 2012 - January 31, 2018
CAREER: Integrating DNA and Inorganic Surfaces for Functional Materials Design
Directorate for Engineering
grant February 15, 2012 - January 31, 2017
CAREER: Integrating DNA and Inorganic Surfaces for Functional Materials Design
National Science Foundation
grant May 1, 2010 - April 30, 2014
Magnetically-Driven Orientation of Multiphase Polymer Systems: A Ligand-Functionalized, Magnetic Nanoparticle Approach
Directorate for Engineering
grant May 1, 2010 - April 30, 2014
Magnetically-Driven Orientation of Multiphase Polymer Systems: A Ligand-Functionalized, Magnetic Nanoparticle Approach
National Science Foundation