Works (125)

2020 journal article

Anisotropic Optical and Frictional Properties of Langmuir-Blodgett Film Consisting of Uniaxially-Aligned Rod-Shaped Cellulose Nanocrystals

ADVANCED MATERIALS INTERFACES, 7(9).

By: I. Chae, D. Ngo, Z. Chen, A. Kwansa, X. Chen, A. Meddeb, N. Podraza, Y. Yingling, Z. Ounaies, S. Kim

Source: ORCID
Added: June 2, 2020

2020 journal article

Co-assembling Polysaccharide Nanocrystals and Nanofibers for Robust Chiral Iridescent Films

ACS Applied Materials & Interfaces, 7.

By: R. Xiong, A. Singh, S. Yu, S. Zhang, H. Lee, Y. Yingling, D. Nepal, T. Bunning, V. Tsukruk

Source: ORCID
Added: July 23, 2020

2020 journal article

Effect of Octadecylamine Surfactant on DNA Interactions with Graphene Surfaces

Langmuir, 36(4), 931–938.

By: H. Kim, N. Brown, S. Zauscher & Y. Yingling

Source: ORCID
Added: January 23, 2020

2020 journal article

In silico structure prediction of full-length cotton cellulose synthase protein (GhCESA1) and its hierarchical complexes

Cellulose, 4.

By: A. Singh, A. Kwansa, H. Kim, J. Williams, H. Yang, N. Li, J. Kubicki, A. Roberts, C. Haigler, Y. Yingling

Source: ORCID
Added: May 1, 2020

2020 article

Materials matter in phosphorus sustainability

Jones, J. L., Yingling, Y. G., Reaney, I. M., & Westerhoff, P. (2020, January). MRS BULLETIN, Vol. 45, pp. 7–10.

By: J. Jones, Y. Yingling, I. Reaney & P. Westerhoff

Sources: Web Of Science, ORCID
Added: February 17, 2020

2020 journal article

Merging Materials and Data Science: Opportunities, Challenges, and Education in Materials Informatics

MRS Advances, 3, 1–18.

By: T. Oweida, A. Mahmood, M. Manning, S. Rigin & Y. Yingling

Source: ORCID
Added: March 11, 2020

2019 journal article

Biochemical and physiological flexibility accompanies reduced cellulose biosynthesis in Brachypodium cesa1S830N

AoB PLANTS, 11(5).

By: C. Brabham, A. Singh, J. Stork, Y. Rong, I. Kumar, K. Kikuchi, Y. Yingling, T. Brutnell, J. Rose, S. Debolt

Ed(s): P. Jameson

Sources: Crossref, ORCID
Added: December 16, 2019

2019 journal article

High-Performance Chromatographic Characterization of Surface Chemical Heterogeneities of Fluorescent Organic–Inorganic Hybrid Core–Shell Silica Nanoparticles

ACS Nano, 13(2), 1795–1804.

By: T. Gardinier, F. Kohle, J. Peerless, K. Ma, M. Turker, J. Hinckley, Y. Yingling, U. Wiesner

Sources: Web Of Science, Crossref, ORCID
Added: March 25, 2019

2019 journal article

Intrinsically disordered proteins access a range of hysteretic phase separation behaviors

Science Advances, 5(10), eaax5177.

By: F. Garcia Quiroz, N. Li, S. Roberts, P. Weber, M. Dzuricky, I. Weitzhandler, Y. Yingling, A. Chilkoti

Sources: Web Of Science, Crossref, ORCID
Added: November 4, 2019

2019 journal article

Simulations of Cellulose Synthesis Initiation and Termination in Bacteria

The Journal of Physical Chemistry B, 123(17), 3699–3705.

By: H. Yang, J. McManus, D. Oehme, A. Singh, Y. Yingling, M. Tien, J. Kubicki

Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Bathophenanthroline Disulfonate Ligand-Induced Self-Assembly of Ir(III) Complexes in Water: An Intriguing Class of Photoluminescent Soft Materials

ACS Omega, 3(10), 14027–14038.

By: M. McGoorty, A. Singh, T. Deaton, B. Peterson, C. Taliaferro, Y. Yingling, F. Castellano

Sources: NC State University Libraries, Crossref, ORCID
Added: November 26, 2018

2018 journal article

Cellulose synthase ‘class specific regions’ are intrinsically disordered and functionally undifferentiated

Journal of Integrative Plant Biology, 1(6), 481–497.

By: T. Scavuzzo-Duggan, A. Chaves, A. Singh, L. Sethaphong, E. Slabaugh, Y. Yingling, C. Haigler, A. Roberts

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Design of Histone-Mimic Nanoparticles for DNA and RNA Compaction using Molecular Modeling

Biophysical Journal, 114(3), 362a.

By: M. Manning, J. Nash & Y. Yingling

Sources: Crossref, ORCID
Added: January 19, 2020

2018 journal article

Enzymatic Synthesis of Nucleobase-Modified Single-Stranded DNA Offers Tunable Resistance to Nuclease Degradation

Biomacromolecules, 19(8), 3525–3535.

By: R. Gu, T. Oweida, Y. Yingling, A. Chilkoti & S. Zauscher

Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Progress in ligand design for monolayer-protected nanoparticles for nanobio interfaces

Biointerphases, 13(6), 06D502.

By: M. Manning, A. Kwansa, T. Oweida, J. Peerless, A. Singh & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: December 3, 2018

2018 journal article

Sequence Directionality Dramatically Affects LCST Behavior of Elastin-Like Polypeptides

Biomacromolecules, 19(7), 2496–2505.

By: N. Li, S. Roberts, F. Quiroz, A. Chilkoti & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2018 journal article

Soft Matter Informatics: Current Progress and Challenges

Advanced Theory and Simulations, 2(1), 1800129.

By: J. Peerless, N. Milliken, T. Oweida, M. Manning & Y. Yingling

Sources: ORCID, Crossref
Added: December 16, 2019

2018 journal article

Wrapping Nanocellulose Nets around Graphene Oxide Sheets

Angewandte Chemie International Edition, 57(28), 8508–8513.

By: R. Xiong, H. Kim, L. Zhang, V. Korolovych, S. Zhang, Y. Yingling, V. Tsukruk

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Advances in Molecular Modeling of Nanoparticle Nucleic Acid Interfaces

Bioconjugate Chemistry, 28(1), 3–10.

By: J. Nash, A. Kwansa, J. Peerless, H. Kim & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2017 journal article

Effect of C 60 adducts on the dynamic structure of aromatic solvation shells

Chemical Physics Letters, 678, 79–84.

By: J. Peerless, G. Bowers, A. Kwansa & Y. Yingling

Sources: Crossref, ORCID
Added: December 16, 2019

2017 journal article

Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA

Advanced Materials Interfaces, 4(8), 1601168.

By: H. Kim, B. Farmer & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA

Advanced Materials Interfaces.

Source: ORCID
Added: January 6, 2020

2017 journal article

Functional Modification of Silica through Enhanced Adsorption of Elastin-Like Polypeptide Block Copolymers

Biomacromolecules, 19(2), 298–306.

By: L. Li, N. Li, Q. Tu, O. Im, C. Mo, W. Han, W. Fuss, N. Carroll ...

Sources: NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Interfacial Mechanical Properties of Graphene on Self-Assembled Monolayers: Experiments and Simulations

ACS Applied Materials & Interfaces, 9(11), 10203–10213.

By: Q. Tu, H. Kim, T. Oweida, Z. Parlak, Y. Yingling & S. Zauscher

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Interfacial stability of graphene-based surfaces in water and organic solvents

Journal of Materials Science, 53(8), 5766–5776.

By: H. Kim, T. Oweida & Y. Yingling

Sources: NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Macromol. Rapid Commun. 20/2017

Macromolecular Rapid Communications, 38(20).

By: N. Li, H. Kuang, W. Fuss, S. Zauscher, E. Kokkoli & Y. Yingling

Source: ORCID
Added: January 6, 2020

2017 journal article

Physisorption: Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA (Adv. Mater. Interfaces 8/2017)

Advanced Materials Interfaces, 4(8).

By: H. Kim, B. Farmer & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2017 journal article

Salt Responsive Morphologies of ssDNA-Based Triblock Polyelectrolytes in Semi-Dilute Regime: Effect of Volume Fractions and Polyelectrolyte Length

Macromolecular Rapid Communications, 38(20), 1700422.

By: N. Li, H. Kuang, W. Fuss, S. Zauscher, E. Kokkoli & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2017 journal article

Template-Guided Assembly of Silk Fibroin on Cellulose Nanofibers for Robust Nanostructures with Ultrafast Water Transport

ACS Nano, 11(12), 12008–12019.

By: R. Xiong, H. Kim, S. Zhang, S. Kim, V. Korolovych, R. Ma, Y. Yingling, C. Lu, V. Tsukruk

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2016 journal article

A Barley Efflux Transporter Operates in a Na+-Dependent Manner, as Revealed by a Multidisciplinary Platform

The Plant Cell, 12(1), TPC2015–00625-RA.

By: Y. Nagarajan, J. Rongala, S. Luang, A. Singh, N. Shadiac, J. Hayes, T. Sutton, M. Gilliham ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Binding of single stranded nucleic acids to cationic ligand functionalized gold nanoparticles

Biointerphases, 11(4).

By: J. Nash, T. Tucker, W. Therriault & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Bionanocomposites: Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces (Adv. Funct. Mater. 35/2016)

Advanced Functional Materials, 26(35), 6496–6496.

By: A. Grant, H. Kim, T. Dupnock, K. Hu, Y. Yingling & V. Tsukruk

Sources: ORCID, Crossref
Added: January 6, 2020

2016 journal article

Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex

Sci. Rep., 6, 28696.

By: B. Nixon, K. Mansouri, A. Singh, J. Du, J. Davis, J. Lee, E. Slabaugh, V. Vandavasi ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Design of Potent and Controllable Anticoagulants Using DNA Aptamers and Nanostructures

Molecules, 21(12), 202.

By: A. Rangnekar, J. Nash, B. Goodfred, Y. Yingling & T. LaBean

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Emulsion-Based RIR-MAPLE Deposition of Conjugated Polymers: Primary Solvent Effect and Its Implications on Organic Solar Cell Performance

ACS Appl. Mater. Interfaces, 8(30), 19494–19506.

By: W. Ge, N. Li, R. McCormick, E. Lichtenberg, Y. Yingling & A. Stiff-Roberts

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Fluorescence Blinking as an Output Signal for Biosensing

ACS Sensors, 1(11), 1295–1300.

By: B. Roark, J. Tan, A. Ivanina, M. Chandler, J. Castaneda, H. Kim, S. Jawahar, M. Viard ...

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2016 journal article

LCST Behavior is Manifested in a Single Molecule: Elastin-Like polypeptide (VPGVG) n

Biomacromolecules, 17(1), 111–118.

By: B. Zhao, N. Li, Y. Yingling & C. Hall

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 article

Molecular Dynamics Simulations of Nano-biomaterials

Encyclopedia of Nanotechnology, pp. 2260–2269.

By: M. Pasquinelli & Y. Yingling

Source: ORCID
Added: January 6, 2020

2016 journal article

Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis

Cellulose, 23(1), 145–161.

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Sequence dependent interaction of single stranded DNA with graphitic flakes: atomistic molecular dynamics simulations

MRS Advances, 1(25), 1883–1889.

By: H. Kim, S. Huang & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2016 journal article

Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces

Adv. Funct. Mater., 7(35), 6380–6392.

By: A. Grant, H. Kim, T. Dupnock, K. Hu, Y. Yingling & V. Tsukruk

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

The effect of imidazolium cations on the structure and activity of the Candida antarctica Lipase B enzyme in ionic liquids

Physical Chemistry Chemical Physics, 18(32), 22062–22069.

By: H. Kim, D. Eom, Y. Koo & Y. Yingling

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

2016 journal article

When in silico meets in vitro: Molecular basis of function of an anion-permeable efflux transporter from barley (Hordeum vulgare L.)

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

An Implicit Solvent Ionic Strength (ISIS) Method to Model Polyelectrolyte Systems with Dissipative Particle Dynamics

Macromolecular Theory and Simulations, 24(1), 7–12.

By: N. Li, W. Fuss & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

CELLULOSE SYNTHASE INTERACTIVE1 Is Required for Fast Recycling of Cellulose Synthase Complexes to the Plasma Membrane in Arabidopsis

The Plant Cell, 27(10), tpc.15.00442.

By: L. Lei, A. Singh, L. Bashline, S. Li, Y. Yingling & Y. Gu

Sources: NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics

ACS Nano, 9(12), 12374–12382.

By: J. Nash, A. Singh, N. Li & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Cover Picture: Macromol. Theory Simul. 1∕2015

Macromolecular Theory and Simulations, 24(1), 1–1.

By: N. Li, W. Fuss & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2015 journal article

Effect of NP shape and ligand flexibility in the design of nucleic acid wrapping NPs

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

Effect of surface polarity on physisorption of biomolecules: Molecular modeling

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility

J. Phys. Chem. B, 119(49), 15344–15352.

By: J. Peerless, G. Bowers, A. Kwansa & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Gold nanoparticle-nucleic acid modeling using GPU-accelerated molecular dynamics

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

How Cellulose Elongates—A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA

J. Phys. Chem. B, 119(22), 6525–6535.

By: H. Yang, J. Zimmer, Y. Yingling & J. Kubicki

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Microtubules and cellulose biosynthesis: the emergence of new players

Current Opinion in Plant Biology, 28, 76–82.

By: S. Li, L. Lei, Y. Yingling & Y. Gu

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Molecular description of LCST behavior of elastin-like peptides poly(VPGVG) and poly(VGPVG)

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

Morphological and rheological properties of aqueous micellar network of polyelectrolyte block copolymers

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2015 journal article

Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles

Soft Matter, 11(42), 8236–8245.

By: N. Li, W. Fuss, L. Tang, R. Gu, A. Chilkoti, S. Zauscher, Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Simulations of the self-assembly of polyelectrolyte block copolymers using dissipative particle dynamics with an implicit solvent ionic strength (ISIS) method

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2014 journal article

Cellulose synthases: new insights from crystallography and modeling

Trends in Plant Science, 10(2), 99–106.

By: E. Slabaugh, J. Davis, C. Haigler, Y. Yingling & J. Zimmer

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase

Journal of Experimental Botany, 65(22), 6645–6653.

By: E. Slabaugh, L. Sethaphong, C. Xiao, J. Amick, C. Anderson, C. Haigler, Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

Enzymatic Polymerization of High Molecular Weight DNA Amphiphiles That Self-Assemble into Star-Like Micelles

Adv. Mater., 2(19), n/a–n/a.

By: L. Tang, V. Tjong, N. Li, Y. Yingling, A. Chilkoti & S. Zauscher

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

Molecular Description of the LCST Behavior of an Elastin-Like Polypeptide

Biomacromolecules, 15(10), 3522–3530.

By: N. Li, F. Quiroz, C. Hall, A. Chilkoti & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2014 journal article

Progress in molecular modelling of DNA materials

Molecular Simulation, 5(10-11), 1–7.

By: N. Li, H. Kim, J. Nash, M. Lim & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 journal article

The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study

Phys. Chem. Chem. Phys., 16(7), 2944.

By: H. Kim, S. Ha, L. Sethaphong, Y. Koo & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Correlating fullerene diffusion with the polythiophene morphology: molecular dynamics simulations

Soft Matter, 9(42), 10048.

By: R. Pani, B. Bond, G. Krishnan & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Modeling polymer/biopolymer and nanoparticle interactions: Prediction of materials morphology

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2013 journal article

Tertiary model of a plant cellulose synthase

Proceedings of the National Academy of Sciences, 110(18), 7512–7517.

By: L. Sethaphong, C. Haigler, J. Kubicki, J. Zimmer, D. Bonetta, S. DeBolt, Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations

Biophysical Journal, 104(2), 29a.

By: A. Singh, N. Li & Y. Yingling

Source: ORCID
Added: January 6, 2020

2013 conference paper

X3DBio2: A visual analysis tool for biomolecular structure comparison

In P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, & C. G. Healey (Eds.), Visualization and Data Analysis 2013 (Vol. 2, p. 86540W).

By: H. Yi, S. Thakur, L. Sethaphong & Y. Yingling

Ed(s): P. Wong, D. Kao, M. Hao, C. Chen & C. Healey

Event: IS&T/SPIE Electronic Imaging

Sources: NC State University Libraries, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Effect of solvent on the interfacial properties between functionalized nanoparticles and polymers

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2012 journal article

Effect of surface immobilization on the DNA structure and its mechanical properties

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2012 journal article

Gold Nanoparticles: Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation (Adv. Mater. 31/2012)

Adv. Mater., 24(31), 4221–4221.

By: J. Railsback, A. Singh, R. Pearce, T. McKnight, R. Collazo, Z. Sitar, Y. Yingling, A. Melechko

Source: ORCID
Added: January 6, 2020

2012 journal article

Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2012 journal article

Role of Solvent and Dendritic Architecture on the Redox Core Encapsulation

J. Phys. Chem. A, 116(28), 7593–7599.

By: R. Pani & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2012 journal article

The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study

Materials Science and Engineering: C, 32(8), 2583–2588.

By: A. Marlowe, A. Singh & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids

Journal of Molecular Liquids, 166, 25–30.

By: H. Kim, R. Pani, S. Ha, Y. Koo & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 journal article

Tuning DNA structure and compaction with gold nanoparticles

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2012 journal article

Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation

Adv. Mater., 24(31), 4261–4265.

By: J. Railsback, A. Singh, R. Pearce, T. McKnight, R. Collazo, Z. Sitar, Y. Yingling, A. Melechko

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2012 conference paper

X3DBio1: a visual analysis tool for biomolecular structure exploration

In P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, R. Kosara, M. A. Livingston, … I. Roberts (Eds.), Visualization and Data Analysis 2012 (Vol. 1, p. 8294OS).

By: H. Yi, A. Singh & Y. Yingling

Ed(s): P. Wong, D. Kao, M. Hao, C. Chen, R. Kosara, M. Livingston, J. Park, I. Roberts

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2011 journal article

Computational Prediction of Cellulose Synthase Protein Structure

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2011 journal article

Interactions of Cations with RNA Loop-Loop Complexes

Biophysical Journal, 101(3), 727–735.

By: A. Singh, L. Sethaphong & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2011 journal article

Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2011 journal article

Nucleic acid helical conformation and sequence effects on cationic binding

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2011 journal article

Simulations of Stretching Single Stranded DNA

MRS Proceedings, 1301.

By: A. Singh & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2011 journal article

Theoretical perspective on properties of DNA-functionalized surfaces

J. Polym. Sci. B Polym. Phys., 49(22), 1563–1568.

By: A. Singh, H. Eksiri & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2010 journal article

Cationic Sequence Dependence in Nucleic Acid Structures

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2010 journal article

Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films

Langmuir, 26(22), 17339–17347.

By: A. Singh, S. Snyder, L. Lee, A. Johnston, F. Caruso & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2010 journal article

Molecular Dynamics and Distribution of Ions in Kissing Loop

Biophysical Journal, 98(3), 264a.

By: A. Singh, L. Sethaphong & Y. Yingling

Source: ORCID
Added: January 6, 2020

2010 journal article

The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations

Biophysical Journal, 98(3), 568a.

By: A. Marlowe & Y. Yingling

Source: ORCID
Added: January 6, 2020

2010 journal article

The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution †

J. Phys. Chem. C, 114(12), 5506–5512.

By: L. Sethaphong, A. Singh, A. Marlowe & Y. Yingling

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2009 journal article

Computational Discovery Of The Electronegative Channel In RNA Looploop Interactions

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2009 journal article

Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV)

Biophysical Journal, 96(3), 19a–20a.

By: W. Kasprzak, Y. Yingling, A. Simon & B. Shapiro

Source: ORCID
Added: January 6, 2020

2008 journal article

COMP 215-Explicit molecular dynamics simulations of kissing loop motif formed between TAR-RNA element of HIV-1 and aptamer

Abstracts of Papers of the American Chemical Society.

Source: ORCID
Added: January 6, 2020

2008 journal article

Comparing Ion Distributions around RNA and DNA Helical and Loop-loop Motifs

MRS Proceedings, 1130.

By: A. Semichaevsky, A. Marlowe & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2008 chapter

Protocols for the In Silico Design of RNA Nanostructures

In Methods in Molecular Biology™ (pp. 93–115).

By: B. Shapiro, E. Bindewald, W. Kasprzak & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2008 journal article

Structural Domains within the 3' Untranslated Region of Turnip Crinkle Virus

Journal of Virology, 82(17), 8706–8720.

By: J. McCormack, X. Yuan, Y. Yingling, W. Kasprzak, R. Zamora, B. Shapiro, A. Simon

Sources: ORCID, Crossref
Added: January 6, 2020

2008 journal article

The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits

RNA, 14(11), 2379–2393.

By: V. Stupina, A. Meskauskas, J. McCormack, Y. Yingling, B. Shapiro, J. Dinman, A. Simon

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Bridging the gap in RNA structure prediction

Current Opinion in Structural Biology, 17(2), 157–165.

By: B. Shapiro, Y. Yingling, W. Kasprzak & E. Bindewald

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational Design of an RNA Hexagonal Nanoring and an RNA Nanotube

Nano Letters, 7(8), 2328–2334.

By: Y. Yingling & B. Shapiro

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational investigation into the mechanisms of UV ablation of poly(methyl methacrylate)

Applied Surface Science, 253(15), 6382–6385.

By: M. Prasad, P. Conforti, B. Garrison & Y. Yingling

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Computational studies of ultraviolet ablation of poly(methyl methacrylate)

Journal of Physics: Conference Series, 59, 322–327.

By: P. Conforti, Y. Yingling & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material

Applied Surface Science, 253(15), 6377–6381.

By: Y. Yingling & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

Nucleic Acids Research, 36(suppl_1), D392–D397.

By: E. Bindewald, R. Hayes, Y. Yingling, W. Kasprzak & B. Shapiro

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

The Impact of Dyskeratosis Congenita Mutations on the Structure and Dynamics of the Human Telomerase RNA Pseudoknot Domain

Journal of Biomolecular Structure and Dynamics, 24(4), 303–319.

By: Y. Yingling & B. Shapiro

Sources: ORCID, Crossref
Added: January 6, 2020

2007 journal article

Theoretical investigation of formation and properties of RNA nanoparticles

Biophysical Journal.

Source: ORCID
Added: January 6, 2020

2006 journal article

A unique electromagnetic photon field using Feynman's electron characteristics and Maxwell's equations

Journal of Computational and Theoretical Nanoscience.

Source: ORCID
Added: January 6, 2020

2006 journal article

The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation

Journal of Molecular Graphics and Modelling, 25(2), 261–274.

By: Y. Yingling & B. Shapiro

Source: ORCID
Added: January 6, 2020

2005 journal article

Coarse-Grained Model of the Interaction of Light with Polymeric Material: Onset of Ablation

The Journal of Physical Chemistry B, 109(34), 16482–16489.

By: Y. Yingling & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2005 journal article

Dynamic Behavior of the Telomerase RNA Hairpin Structure and its Relationship to Dyskeratosis Congenita

Journal of Molecular Biology, 348(1), 27–42.

By: Y. Yingling & B. Shapiro

Sources: ORCID, Crossref
Added: January 6, 2020

2004 journal article

Coarse-Grained Chemical Reaction Model

J. Phys. Chem. B, 108(6), 1815–1821.

By: Y. Yingling & B. Garrison

Source: ORCID
Added: January 6, 2020

2004 journal article

Theoretical investigation of laser pulse width dependence in a thermal confinement regime

Applied Physics A, 79(4-6), 757–759.

By: Y. Yingling, P. Conforti & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Big molecule ejection—SIMS vs. MALDI

Applied Surface Science, 203-204, 69–71.

By: B. Garrison, A. Delcorte, L. Zhigilei, T. Itina, K. Krantzman, Y. Yingling, C. McQuaw, E. Smiley, N. Winograd

Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Computer Simulations of Laser Ablation of Molecular Substrates

ChemInform, 34(18).

By: L. Zhigilei, E. Leveugle, B. Garrison, Y. Yingling & M. Zeifman

Source: ORCID
Added: January 6, 2020

2003 journal article

Computer Simulations of Laser Ablation of Molecular Substrates

Chemical Reviews, 103(2), 321–348.

By: L. Zhigilei, E. Leveugle, B. Garrison, Y. Yingling & M. Zeifman

Sources: ORCID, Crossref
Added: January 6, 2020

2003 journal article

Molecular dynamics simulations of matrix-assisted laser desorption—connections to experiment

International Journal of Mass Spectrometry, 226(1), 85–106.

By: L. Zhigilei, Y. Yingling, T. Itina, T. Schoolcraft & B. Garrison

Source: ORCID
Added: January 6, 2020

2003 journal article

Photochemical ablation of organic solids

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 202, 188–194.

By: Y. Yingling & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2002 journal article

Photochemical induced effects in material ejection in laser ablation

Chemical Physics Letters, 364(3-4), 237–243.

By: Y. Yingling & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

Laser ablation of bicomponent systems: A probe of molecular ejection mechanisms

Applied Physics Letters, 78(11), 1631–1633.

By: Y. Yingling, L. Zhigilei, B. Garrison, A. Koubenakis, J. Labrakis & S. Georgiou

Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

Photochemical fragmentation processes in laser ablation of organic solids

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 180(1-4), 171–175.

By: Y. Yingling, L. Zhigilei & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

2001 journal article

The role of the photochemical fragmentation in laser ablation: a molecular dynamics study

Journal of Photochemistry and Photobiology A: Chemistry, 145(3), 173–181.

By: Y. Yingling, L. Zhigilei & B. Garrison

Sources: ORCID, Crossref
Added: January 6, 2020

journal article

New polyvalent RNA nanoparticle comprises RNA motifs as building blocks, useful in a drug delivery composition for treating or preventing a disease or disorder, e.g. AIDS, Alzheimer's disease, anemia, cancer, hypertension, or obesity

Source: ORCID
Added: January 6, 2020

journal article

New polyvalent RNA nanoparticle, useful for treating or preventing a disease or disorder, e.g. adenoma, aging, AIDS, alopecia, Alzheimer's disease, or anemia

Source: ORCID
Added: January 6, 2020

Employment

2007 - present

North Carolina State University Raleigh, NC, US
Professor Materials Science and Engineering

2004 - 2007

National Cancer Institute Frederick, MD, US
CRTA Fellow Center for Cancer Research Nanobiology Program

2002 - 2004

Pennsylvania State University University Park, PA, US
Postdoctoral Research Associate Chemistry

Education

1997 - 2002

Pennsylvania State University University Park, PA, US
PhD Materials

1990 - 1996

Saint Petersburg State Polytechnical University Saint Petersburg, RU
B.S. Computer Science and Engineering

Funding History

Funding history based on the linked ORCID record.

grant August 1, 2017 - July 31, 2020
Collaborative Research: Processing Films from Multi-Functional Polymer Dispersion Blends
Directorate for Engineering
grant July 15, 2014 - June 30, 2018
Collaborative Research: Supramolecular Materials by Nucleic Acid Block Copolymer Self-Assembly
Directorate for Mathematical & Physical Sciences
grant July 15, 2014 - June 30, 2017
Collaborative Research: Supramolecular Materials by Nucleic Acid Block Copolymer Self-Assembly
National Science Foundation
grant July 1, 2014 - June 30, 2018
Confinement, Dynamics, and Orientation of DNA at Nano-interfaces
Directorate for Engineering
grant July 1, 2014 - June 30, 2017
Confinement, Dynamics, and Orientation of DNA at Nano-interfaces
National Science Foundation
grant September 1, 2013 - May 31, 2014
Modeling and Theory-Driven Design of Soft Materials
Directorate for Mathematical & Physical Sciences
grant September 1, 2013 - May 31, 2014
Modeling and Theory-Driven Design of Soft Materials
National Science Foundation
grant June 1, 2012 - June 30, 2018
Texas State University PREM: Center on Interfaces in Materials. A Partnership with the Research Triangle MRSEC
Directorate for Mathematical & Physical Sciences
grant June 1, 2012 - May 31, 2017
Texas State University PREM: Center on Interfaces in Materials. A Partnership with the Research Triangle MRSEC
National Science Foundation
grant February 15, 2012 - January 31, 2018
CAREER: Integrating DNA and Inorganic Surfaces for Functional Materials Design
Directorate for Engineering
grant February 15, 2012 - January 31, 2017
CAREER: Integrating DNA and Inorganic Surfaces for Functional Materials Design
National Science Foundation
grant May 1, 2010 - April 30, 2014
Magnetically-Driven Orientation of Multiphase Polymer Systems: A Ligand-Functionalized, Magnetic Nanoparticle Approach
Directorate for Engineering
grant May 1, 2010 - April 30, 2014
Magnetically-Driven Orientation of Multiphase Polymer Systems: A Ligand-Functionalized, Magnetic Nanoparticle Approach
National Science Foundation