Yaroslava Yingling

Allen, B., Pinky, S., Beard, E., Calzadilla, N., Gringeri, A., Sanders, M., … Yingling, Y. (2024, April 8). Monomer Architecture as a Mechanism to Control the Self-Assembly of Oligomeric Diblock Peptide-Polymer Amphiphiles. https://doi.org/10.26434/chemrxiv-2024-0bhgz

Allen, B., Pinky, S., Beard, E., Gringeri, A., Calzadilla, N., Sanders, M., … Knight, A. (2024, April 9). Monomer Architecture as a Mechanism to Control the Self-Assembly of Oligomeric Diblock Peptide-Polymer Amphiphiles. https://doi.org/10.26434/chemrxiv-2024-0bhgz-v2

Hussein, F. B., Cannon, A. H., Hutchison, J. M., Gorman, C. B., Yingling, Y. G., & Mayer, B. K. (2024, March 28). Phosphate-binding protein-loaded iron oxide particles: adsorption performance for phosphorus removal and recovery from water. ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY, Vol. 3. https://doi.org/10.1039/D4EW00052H

Kwansa, A. L., Singh, A., Williams, J. T., Haigler, C. H., Roberts, A. W., & Yingling, Y. G. (2024, January 6). Structural determination of a full-length plant cellulose synthase informed by experimental and in silico methods. CELLULOSE, Vol. 1. https://doi.org/10.1007/s10570-023-05691-x

Zhang, B., Pinky, S. K., Kwansa, A. L., Ferguson, S., Yingling, Y. G., & Stiff-Roberts, A. D. (2023, March 29). Correlation of Emulsion Chemistry, Film Morphology, and Device Performance in Polyfluorene LEDs Deposited by RIR-MAPLE. ACS APPLIED MATERIALS & INTERFACES, Vol. 3. https://doi.org/10.1021/acsami.3c03012

Choi, J., Kwansa, A. L., Yingling, Y. G., & Kim, S. H. (2023). DFT-Based Calculation of Molecular Hyperpolarizability and SFG Intensity of Symmetric and Asymmetric Stretch Modes of Alkyl Groups. JOURNAL OF PHYSICAL CHEMISTRY B, 127(39), 8456–8467. https://doi.org/10.1021/acs.jpcb.3c03910

Pinky, S. K., Kwansa, A. L., Zhang, B., Stiff-Roberts, A. D., & Yingling, Y. G. (2023, February 2). Effect of solvent on the emulsion and morphology of polyfluorene films: all-atom molecular dynamics approach. SOFT MATTER, Vol. 2. https://doi.org/10.1039/D2SM01001A

Verma, P., Kwansa, A. L., Ho, R., Yingling, Y. G., & Zimmer, J. (2023). Insights into substrate coordination and glycosyl transfer of poplar cellulose synthase-8. STRUCTURE, 31(10), 1166-+. https://doi.org/10.1016/j.str.2023.07.010

Kwansa, A. L. L., Pani, R. C. C., DeLoach, J. A. A., Tieppo, A., Moskala, E. J. J., Perri, S. T. T., & Yingling, Y. G. G. (2023, June 22). Molecular Mechanism of Plasticizer Exudation from Polyvinyl Chloride. MACROMOLECULES, Vol. 6. https://doi.org/10.1021/acs.macromol.2c01735

Oweida, T. J., & Yingling, Y. G. (2023, September 7). Resolving Structure of ssDNA in Solution by Fusing Molecular Simulations and Scattering Experiments with Machine Learning. ADVANCED THEORY AND SIMULATIONS, Vol. 9. https://doi.org/10.1002/adts.202300411

Peerless, J. S., Gulyuk, A. V., Milliken, N. J. B., Kim, G. D., Reid, E., Lee, J. W., … Yingling, Y. G. (2023, January 25). Role of Nanoscale Morphology on the Efficiency of Solvent-Based Desalination Method. ACS ES&T WATER, Vol. 1. https://doi.org/10.1021/acsestwater.2c00473

Mahmood, A. U., Rizvi, M. H., Tracy, J. B., & Yingling, Y. G. (2023, June 13). Solvent Effects in Ligand Stripping Behavior of Colloidal Nanoparticles. ACS NANO, Vol. 6. https://doi.org/10.1021/acsnano.3c01313

Chatterjee, A., Pratakshya, P., Kwansa, A. L., Kaimal, N., Cannon, A. H., Sartori, B., … Gorodetsky, A. A. (2023, January 24). Squid Skin Cell-Inspired Refractive Index Mapping of Cells, Vesicles, and Nanostructures. ACS BIOMATERIALS SCIENCE & ENGINEERING, Vol. 1. https://doi.org/10.1021/acsbiomaterials.2c00088

Xie, Y., Li, N. K., Singh, A., Deshmukh, S. A., & Yingling, Y. (2022). A Comparison between the Lower Critical Solution Temperature Behavior of Polymers and Biomacromolecules. Physchem. https://doi.org/10.3390/physchem2010005

Mahmood, A. U., & Yingling, Y. G. (2022). All-Atom Simulation Method for Zeeman Alignment and DipolarAssembly of Magnetic Nanoparticles br. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 18(5), 3122–3135. https://doi.org/10.1021/acs.jctc.1c01253

Du, J., Vandavasi, V. G., Molloy, K. R., Yang, H., Massenburg, L. N., Singh, A., … Nixon, B. T. (2022, August 10). Evidence for Plant-Conserved Region Mediated Trimeric CESAs in Plant Cellulose Synthase Complexes br. BIOMACROMOLECULES, Vol. 8. https://doi.org/10.1021/acs.biomac.2c00550

Nash, J. A., Manning, M. D., Gulyuk, A. V., Kuznetsov, A. E., & Yingling, Y. G. (2022). Gold nanoparticle design for RNA compaction. BIOINTERPHASES, 17(6). https://doi.org/10.1116/6.0002043

Allen, B. P., Wright, Z. M., Taylor, H. F., Oweida, T. J., Kader-Pinky, S., Patteson, E. F., … Knight, A. S. (2022, January 27). Mapping the Morphological Landscape of Oligomeric Di-block Peptide-Polymer Amphiphiles**. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, Vol. 1. https://doi.org/10.1002/anie.202115547

Allen, B. P., Wright, Z. M., Taylor, H. F., Oweida, T. J., Kader‐Pinky, S., Patteson, E. F., … Knight, A. S. (2022). Mapping the Morphological Landscape of Oligomeric Di‐block Peptide–Polymer Amphiphiles**. Angewandte Chemie. https://doi.org/10.1002/ange.202115547

Oweida, T. J., Kim, H. S., Donald, J. M., Singh, A., & Yingling, Y. G. (2021). Assessment of AMBER Force Fields for Simulations of ssDNA. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 17(2), 1208–1217. https://doi.org/10.1021/acs.jctc.0c00931

Chandler, M., Minevich, B., Roark, B., Viard, M., Johnson, M. B., Rizvi, M. H., … Afonin, K. A. (2021). Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities. ACS APPLIED MATERIALS & INTERFACES, 13(33), 39030–39041. https://doi.org/10.1021/acsami.1c09230

Li, N. K., Xie, Y., & Yingling, Y. G. (2021). Insights into Structure and Aggregation Behavior of Elastin-like Polypeptide Coacervates: All-Atom Molecular Dynamics Simulations. JOURNAL OF PHYSICAL CHEMISTRY B, 125(30), 8627–8635. https://doi.org/10.1021/acs.jpcb.1c02822

Burris, J. N., Makarem, M., Slabaugh, E., Chaves, A., Pierce, E. T., Lee, J., … Haigler, C. H. (2021). Phenotypic effects of changes in the FTVTxK region of an Arabidopsis secondary wall cellulose synthase compared with results from analogous mutations in other isoforms. PLANT DIRECT, 5(8). https://doi.org/10.1002/pld3.335

Peerless, J. S., Kwansa, A. L., Hawkins, B. S., Smith, R. C., & Yingling, Y. G. (2021). Uncertainty Quantification and Sensitivity Analysis of Partial Charges on Macroscopic Solvent Properties in Molecular Dynamics Simulations with a Machine Learning Model. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 61(4), 1745–1761. https://doi.org/10.1021/acs.jcim.0c01204

Lee, H., Stryutsky, A., Mahmood, A.-U., Singh, A., Shevchenko, V. V., Yingling, Y. G., & Tsukruk, V. V. (2021). Weakly Ionically Bound Thermosensitive Hyperbranched Polymers. LANGMUIR, 37(9), 2913–2927. https://doi.org/10.1021/acs.langmuir.0c03487

Chae, I., Ngo, D., Chen, Z., Kwansa, A. L., Chen, X., Meddeb, A. B., … Kim, S. H. (2020). Anisotropic Optical and Frictional Properties of Langmuir-Blodgett Film Consisting of Uniaxially-Aligned Rod-Shaped Cellulose Nanocrystals. ADVANCED MATERIALS INTERFACES, 7(9). https://doi.org/10.1002/admi.201902169

Xiong, R., Singh, A., Yu, S., Zhang, S., Lee, H., Yingling, Y. G., … Tsukruk, V. V. (2020). Co-assembling Polysaccharide Nanocrystals and Nanofibers for Robust Chiral Iridescent Films. ACS Applied Materials & Interfaces, 12(31), 35345–35353. https://doi.org/10.1021/acsami.0c08571

Kim, H. S., Brown, N. A., Zauscher, S., & Yingling, Y. G. (2020). Effect of Octadecylamine Surfactant on DNA Interactions with Graphene Surfaces. Langmuir, 36(4), 931–938. https://doi.org/10.1021/acs.langmuir.9b02926

Singh, A., Kwansa, A. L., Kim, H. S., Williams, J. T., Yang, H., Li, N. K., … Yingling, Y. G. (2020). In silico structure prediction of full-length cotton cellulose synthase protein (GhCESA1) and its hierarchical complexes. Cellulose, 27(10), 5597–5616. https://doi.org/10.1007/s10570-020-03194-7

Jones, J. L., Yingling, Y. G., Reaney, I. M., & Westerhoff, P. (2020, January). Materials matter in phosphorus sustainability. MRS BULLETIN, Vol. 45, pp. 7–10. https://doi.org/10.1557/mrs.2020.4

Oweida, T. J., Mahmood, A., Manning, M. D., Rigin, S., & Yingling, Y. G. (2020). Merging Materials and Data Science: Opportunities, Challenges, and Education in Materials Informatics. MRS Advances, 3, 1–18. https://doi.org/10.1557/adv.2020.171

Taylor, N. G., Chung, S. H., Kwansa, A. L., Johnson, R. R., III, Teator, A. J., Milliken, N. J. B., … Leibfarth, F. A. (2020). Partially Fluorinated Copolymers as Oxygen Sensitive(19)F MRI Agents. CHEMISTRY-A EUROPEAN JOURNAL, 26(44), 9982–9990. https://doi.org/10.1002/chem.202001505

Umerani, M. J., Pratakshya, P., Chatterjee, A., Sanchez, J. A. C., Kim, H. S., Ilc, G., … Gorodetsky, A. A. (2020). Structure, self-assembly, and properties of a truncated reflectin variant. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(52), 32891–32901. https://doi.org/10.1073/pnas.2009044117

Brabham, C., Singh, A., Stork, J., Rong, Y., Kumar, I., Kikuchi, K., … Debolt, S. (2019). Biochemical and physiological flexibility accompanies reduced cellulose biosynthesis in Brachypodium cesa1S830N. AoB PLANTS, 11(5). https://doi.org/10.1093/aobpla/plz041

Deaton, T. A., Aydin, F., Li, N. K., Chu, X., Dutt, M., & Yingling, Y. (2019). Dissipative Particle Dynamics Approaches to Modeling the Self-Assembly and Morphology of Neutral and Ionic Block Copolymers in Solution. In E. Maginn & J. Errington (Eds.), Foundations of Molecular Modeling and Simulation: Select Papers from FOMMS 2018 (pp. 75–100). https://doi.org/10.1007/978-981-33-6639-8_4

Gardinier, T. C., Kohle, F. F. E., Peerless, J. S., Ma, K., Turker, M. Z., Hinckley, J. A., … Wiesner, U. (2019). High-Performance Chromatographic Characterization of Surface Chemical Heterogeneities of Fluorescent Organic–Inorganic Hybrid Core–Shell Silica Nanoparticles. ACS Nano, 13(2), 1795–1804. https://doi.org/10.1021/acsnano.8b07876

Garcia Quiroz, F., Li, N. K., Roberts, S., Weber, P., Dzuricky, M., Weitzhandler, I., … Chilkoti, A. (2019). Intrinsically disordered proteins access a range of hysteretic phase separation behaviors. Science Advances, 5(10), eaax5177. https://doi.org/10.1126/sciadv.aax5177

Yang, H., McManus, J., Oehme, D., Singh, A., Yingling, Y. G., Tien, M., & Kubicki, J. D. (2019). Simulations of Cellulose Synthesis Initiation and Termination in Bacteria. The Journal of Physical Chemistry B, 123(17), 3699–3705. https://doi.org/10.1021/acs.jpcb.9b02433

McGoorty, M. M., Singh, A., Deaton, T. A., Peterson, B., Taliaferro, C. M., Yingling, Y. G., & Castellano, F. N. (2018). Bathophenanthroline Disulfonate Ligand-Induced Self-Assembly of Ir(III) Complexes in Water: An Intriguing Class of Photoluminescent Soft Materials. ACS Omega, 3(10), 14027–14038. https://doi.org/10.1021/acsomega.8b02034

Scavuzzo-Duggan, T. R., Chaves, A. M., Singh, A., Sethaphong, L., Slabaugh, E., Yingling, Y. G., … Roberts, A. W. (2018). Cellulose synthase "class specific regions' are intrinsically disordered and functionally undifferentiated. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 60(6), 481–497. https://doi.org/10.1111/jipb.12637

Manning, M., Nash, J. A., & Yingling, Y. G. (2018). Design of Histone-Mimic Nanoparticles for DNA and RNA Compaction using Molecular Modeling. Biophysical Journal, 114(3), 362a. https://doi.org/10.1016/J.BPJ.2017.11.2010

Gu, R., Oweida, T., Yingling, Y. G., Chilkoti, A., & Zauscher, S. (2018). Enzymatic Synthesis of Nucleobase-Modified Single-Stranded DNA Offers Tunable Resistance to Nuclease Degradation. Biomacromolecules, 19(8), 3525–3535. https://doi.org/10.1021/acs.biomac.8b00816

Manning, M. D., Kwansa, A. L., Oweida, T., Peerless, J. S., Singh, A., & Yingling, Y. G. (2018). Progress in ligand design for monolayer-protected nanoparticles for nanobio interfaces. Biointerphases, 13(6), 06D502. https://doi.org/10.1116/1.5044381

Li, N. K., Roberts, S., Quiroz, F. G., Chilkoti, A., & Yingling, Y. G. (2018). Sequence Directionality Dramatically Affects LCST Behavior of Elastin-Like Polypeptides. Biomacromolecules, 19(7), 2496–2505. https://doi.org/10.1021/acs.biomac.8b00099

Peerless, J. S., Milliken, N. J. B., Oweida, T. J., Manning, M. D., & Yingling, Y. G. (2018). Soft Matter Informatics: Current Progress and Challenges. Advanced Theory and Simulations, 2(1), 1800129. https://doi.org/10.1002/adts.201800129

Xiong, R., Kim, H. S., Zhang, L., Korolovych, V. F., Zhang, S., Yingling, Y. G., & Tsukruk, V. V. (2018). Wrapping Nanocellulose Nets around Graphene Oxide Sheets. Angewandte Chemie International Edition, 57(28), 8508–8513. https://doi.org/10.1002/anie.201803076

Nash, J. A., Kwansa, A. L., Peerless, J. S., Kim, H. S., & Yingling, Y. G. (2017). [Review of Advances in Molecular Modeling of Nanoparticle Nucleic Acid Interfaces]. BIOCONJUGATE CHEMISTRY, 28(1), 3–10. https://doi.org/10.1021/acs.bioconjchem.6b00534

Peerless, J. S., Bowers, G. H., Kwansa, A. L., & Yingling, Y. G. (2017). Effect of C 60 adducts on the dynamic structure of aromatic solvation shells. Chemical Physics Letters, 678, 79–84. https://doi.org/10.1016/j.cplett.2017.04.010

Kim, H. S., Farmer, B. L., & Yingling, Y. G. (2017). Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA. Advanced Materials Interfaces, 4(8), 1601168. https://doi.org/10.1002/admi.201601168

Li, L., Li, N. K., Tu, Q., Im, O., Mo, C.-K., Han, W., … López, G. P. (2017). Functional Modification of Silica through Enhanced Adsorption of Elastin-Like Polypeptide Block Copolymers. Biomacromolecules, 19(2), 298–306. https://doi.org/10.1021/acs.biomac.7b01307

Tu, Q., Kim, H. S., Oweida, T. J., Parlak, Z., Yingling, Y. G., & Zauscher, S. (2017). Interfacial Mechanical Properties of Graphene on Self-Assembled Monolayers: Experiments and Simulations. ACS Applied Materials & Interfaces, 9(11), 10203–10213. https://doi.org/10.1021/acsami.6b16593

Kim, H. S., Oweida, T. J., & Yingling, Y. G. (2017). Interfacial stability of graphene-based surfaces in water and organic solvents. Journal of Materials Science, 53(8), 5766–5776. https://doi.org/10.1007/s10853-017-1893-9

Li, N. K., Kuang, H., Fuss, W. H., Zauscher, S., Kokkoli, E., & Yingling, Y. G. (2017). Macromol. Rapid Commun. 20/2017. Macromolecular Rapid Communications, 38(20). https://doi.org/10.1002/marc.201770066

Kim, H. S., Farmer, B. L., & Yingling, Y. G. (2017). Physisorption: Effect of Graphene Oxidation Rate on Adsorption of Poly-Thymine Single Stranded DNA (Adv. Mater. Interfaces 8/2017). Advanced Materials Interfaces, 4(8). https://doi.org/10.1002/admi.201770036

Li, N. K., Kuang, H., Fuss, W. H., Zauscher, S., Kokkoli, E., & Yingling, Y. G. (2017). Salt Responsive Morphologies of ssDNA-Based Triblock Polyelectrolytes in Semi-Dilute Regime: Effect of Volume Fractions and Polyelectrolyte Length. Macromolecular Rapid Communications, 38(20), 1700422. https://doi.org/10.1002/marc.201700422

Xiong, R., Kim, H. S., Zhang, S., Kim, S., Korolovych, V. F., Ma, R., … Tsukruk, V. V. (2017). Template-Guided Assembly of Silk Fibroin on Cellulose Nanofibers for Robust Nanostructures with Ultrafast Water Transport. ACS Nano, 11(12), 12008–12019. https://doi.org/10.1021/acsnano.7b04235

Nagarajan, Y., Rongala, J., Luang, S., Singh, A., Shadiac, N., Hayes, J., … Hrmova, M. (2016). A Barley Efflux Transporter Operates in a Na+-Dependent Manner, as Revealed by a Multidisciplinary Platform. Plant Cell, 28(1), 202–218. https://doi.org/10.1105/tpc.15.00625

Nash, J. A., Tucker, T. L., Therriault, W., & Yingling, Y. G. (2016). Binding of single stranded nucleic acids to cationic ligand functionalized gold nanoparticles. BIOINTERPHASES, 11(4). https://doi.org/10.1116/1.4966653

Grant, A. M., Kim, H. S., Dupnock, T. L., Hu, K., Yingling, Y. G., & Tsukruk, V. V. (2016). Bionanocomposites: Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces (Adv. Funct. Mater. 35/2016). Advanced Functional Materials, 26(35), 6496–6496. https://doi.org/10.1002/adfm.201670231

Nixon, B. T., Mansouri, K., Singh, A., Du, J., Davis, J. K., Lee, J.-G., … Haigler, C. H. (2016). Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex. Scientific Reports, 6(1). https://doi.org/10.1038/srep28696

Rangnekar, A., Nash, J. A., Goodfred, B., Yingling, Y. G., & LaBean, T. H. (2016). Design of Potent and Controllable Anticoagulants Using DNA Aptamers and Nanostructures. MOLECULES, 21(2). https://doi.org/10.3390/molecules21020202

Ge, W., Li, N. K., McCormick, R. D., Lichtenberg, E., Yingling, Y. G., & Stiff-Roberts, A. D. (2016). Emulsion-Based RIR-MAPLE Deposition of Conjugated Polymers: Primary Solvent Effect and Its Implications on Organic Solar Cell Performance. ACS APPLIED MATERIALS & INTERFACES, 8(30), 19494–19506. https://doi.org/10.1021/acsami.6b05596

Roark, B., Tan, J. A., Ivanina, A., Chandler, M., Castaneda, J., Kim, H. S., … Afonin, K. A. (2016). Fluorescence Blinking as an Output Signal for Biosensing. ACS Sensors, 1(11), 1295–1300. https://doi.org/10.1021/acssensors.6b00352

Zhao, B., Li, N. K., Yingling, Y. G., & Hall, C. K. (2016). LCST Behavior is Manifested in a Single Molecule: Elastin-Like polypeptide (VPGVG)n. BIOMACROMOLECULES, 17(1), 111–118. https://doi.org/10.1021/acs.biomac.5b01235

Pasquinelli, M. A., & Yingling, Y. G. (2016). Molecular Dynamics Simulations of Nano-biomaterials. Encyclopedia of Nanotechnology, pp. 2260–2269. https://doi.org/10.1007/978-94-017-9780-1_402

Sethaphong, L., Davis, J. K., Slabaugh, E., Singh, A., Haigler, C. H., & Yingling, Y. G. (2016). Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis. Cellulose, 23(1), 145–161. https://doi.org/10.1007/s10570-015-0789-6

Kim, H. S., Huang, S. M., & Yingling, Y. G. (2016). Sequence dependent interaction of single stranded DNA with graphitic flakes: atomistic molecular dynamics simulations. MRS Advances, 1(25), 1883–1889. https://doi.org/10.1557/adv.2016.91

Grant, A. M., Kim, H. S., Dupnock, T. L., Hu, K., Yingling, Y. G., & Tsukruk, V. V. (2016). Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces. ADVANCED FUNCTIONAL MATERIALS, 26(35), 6380–6392. https://doi.org/10.1002/adfm.201601268

Kim, H. S., Eom, D., Koo, Y.-M., & Yingling, Y. G. (2016). The effect of imidazolium cations on the structure and activity of the Candida antarctica Lipase B enzyme in ionic liquids. Physical Chemistry Chemical Physics, 18(32), 22062–22069. https://doi.org/10.1039/c6cp02355j

When in silico meets in vitro: Molecular basis of function of an anion-permeable efflux transporter from barley (Hordeum vulgare L.). (2016). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/382040/

Li, N. K., Fuss, W. H., & Yingling, Y. G. (2015). An Implicit Solvent Ionic Strength (ISIS) Method to Model Polyelectrolyte Systems with Dissipative Particle Dynamics. MACROMOLECULAR THEORY AND SIMULATIONS, 24(1), 7–12. https://doi.org/10.1002/mats.201400043

Lei, L., Singh, A., Bashline, L., Li, S., Yingling, Y. G., & Gu, Y. (2015). CELLULOSE SYNTHASE INTERACTIVE1 Is Required for Fast Recycling of Cellulose Synthase Complexes to the Plasma Membrane in Arabidopsis. The Plant Cell, 27(10), tpc.15.00442. https://doi.org/10.1105/tpc.15.00442

Nash, J. A., Singh, A., Li, N. K., & Yingling, Y. G. (2015). Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics. ACS NANO, 9(12), 12374–12382. https://doi.org/10.1021/acsnano.5b05684

Li, N. K., Fuss, W. H., & Yingling, Y. G. (2015). Cover Picture: Macromol. Theory Simul. 1∕2015. Macromolecular Theory and Simulations, 24(1), 1–1. https://doi.org/10.1002/mats.201570001

Effect of NP shape and ligand flexibility in the design of nucleic acid wrapping NPs. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/wos-op/publon/28057470/

Effect of surface polarity on physisorption of biomolecules: Molecular modeling. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057471/

Peerless, J. S., Bowers, G. H., Kwansa, A. L., & Yingling, Y. G. (2015). Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility. JOURNAL OF PHYSICAL CHEMISTRY B, 119(49), 15344–15352. https://doi.org/10.1021/acs.jpcb.5b09386

Gold nanoparticle-nucleic acid modeling using GPU-accelerated molecular dynamics. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057466/

Yang, H., Zimmer, J., Yingling, Y. G., & Kubicki, J. D. (2015). How Cellulose Elongates-A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA. JOURNAL OF PHYSICAL CHEMISTRY B, 119(22), 6525–6535. https://doi.org/10.1021/acs.jpcb.5b01433

Li, S., Lei, L., Yingling, Y. G., & Gu, Y. (2015). [Review of Microtubules and cellulose biosynthesis: the emergence of new players]. CURRENT OPINION IN PLANT BIOLOGY, 28, 76–82. https://doi.org/10.1016/j.pbi.2015.09.002

Molecular description of LCST behavior of elastin-like peptides poly(VPGVG) and poly(VGPVG). (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057468/

Morphological and rheological properties of aqueous micellar network of polyelectrolyte block copolymers. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057469/

Li, N. K., Fuss, W. H., Tang, L., Gu, R., Chilkoti, A., Zauscher, S., & Yingling, Y. G. (2015). Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles. SOFT MATTER, 11(42), 8236–8245. https://doi.org/10.1039/c5sm01742d

Simulations of the self-assembly of polyelectrolyte block copolymers using dissipative particle dynamics with an implicit solvent ionic strength (ISIS) method. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057467/

Slabaugh, E., Davis, J. K., Haigler, C. H., Yingling, Y. G., & Zimmer, J. (2014). Cellulose synthases: new insights from crystallography and modeling. Trends in Plant Science, 19(2), 99–106. https://doi.org/10.1016/j.tplants.2013.09.009

Slabaugh, E., Sethaphong, L., Xiao, C., Amick, J., Anderson, C. T., Haigler, C. H., & Yingling, Y. G. (2014). Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase. Journal of Experimental Botany, 65(22), 6645–6653. https://doi.org/10.1093/jxb/eru383

Tang, L., Tjong, V., Li, N., Yingling, Y. G., Chilkoti, A., & Zauscher, S. (2014). Enzymatic Polymerization of High Molecular Weight DNA Amphiphiles That Self-Assemble into Star-Like Micelles. ADVANCED MATERIALS, 26(19), 3050–3054. https://doi.org/10.1002/adma.201306049

Li, N. K., Quiroz, F. G., Hall, C. K., Chilkoti, A., & Yingling, Y. G. (2014). Molecular Description of the LCST Behavior of an Elastin-Like Polypeptide. BIOMACROMOLECULES, 15(10), 3522–3530. https://doi.org/10.1021/bm500658w

Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface. (2014). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2013.11.1626

Li, N. K., Kim, H. S., Nash, J. A., Lim, M., & Yingling, Y. G. (2014). Progress in molecular modelling of DNA materials. MOLECULAR SIMULATION, 40(10-11), 777–783. https://doi.org/10.1080/08927022.2014.913792

Kim, H. S., Ha, S. H., Sethaphong, L., Koo, Y.-M., & Yingling, Y. G. (2014). The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 16(7), 2944–2953. https://doi.org/10.1039/c3cp52516c

Pani, R. C., Bond, B. D., Krishnan, G., & Yingling, Y. G. (2013). Correlating fullerene diffusion with the polythiophene morphology: molecular dynamics simulations. SOFT MATTER, 9(42), 10048–10055. https://doi.org/10.1039/c3sm51906f

Modeling polymer/biopolymer and nanoparticle interactions: Prediction of materials morphology. (2013). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057478/

Sethaphong, L., Haigler, C. H., Kubicki, J. D., Zimmer, J., Bonetta, D., DeBolt, S., & Yingling, Y. G. (2013). Tertiary model of a plant cellulose synthase. Proceedings of the National Academy of Sciences, 110(18), 7512–7517. https://doi.org/10.1073/pnas.1301027110

Singh, A., Li, N., & Yingling, Y. G. (2013). Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations. Biophysical Journal, 104(2), 29a. https://doi.org/10.1016/j.bpj.2012.11.196

Yi, H., Thakur, S., Sethaphong, L., & Yingling, Y. G. (2013). X3DBio2: A visual analysis tool for biomolecular structure comparison. In P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, & C. G. Healey (Eds.), Visualization and Data Analysis 2013 (Vol. 8654). https://doi.org/10.1117/12.2002626

Effect of solvent on the interfacial properties between functionalized nanoparticles and polymers. (2012). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/wos-op/publon/28057488/

Effect of surface immobilization on the DNA structure and its mechanical properties. (2012). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057502/

Railsback, J. G., Singh, A., Pearce, R. C., McKnight, T. E., Collazo, R., Sitar, Z., … Melechko, A. V. (2012). Gold Nanoparticles: Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation (Adv. Mater. 31/2012). Advanced Materials, 24(31), 4221–4221. https://doi.org/10.1002/adma.201290188

Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity. (2012). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2011.11.3474

Pasquinelli, M. A., & Yingling, Y. G. (2012). Molecular dynamics simulations of nano-bio materials. In B. Bhushan (Ed.), Encyclopedia of Nanotechnology (pp. 1454–1463). https://doi.org/10.1007/978-90-481-9751-4_402

Pani, R. C., & Yingling, Y. G. (2012). Role of Solvent and Dendritic Architecture on the Redox Core Encapsulation. JOURNAL OF PHYSICAL CHEMISTRY A, 116(28), 7593–7599. https://doi.org/10.1021/jp304253g

Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations. (2012). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2011.11.1379

Marlowe, A. E., Singh, A., & Yingling, Y. G. (2012). The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study. MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS, 32(8), 2583–2588. https://doi.org/10.1016/j.msec.2012.07.044

Kim, H. S., Pani, R., Ha, S. H., Koo, Y.-M., & Yingling, Y. G. (2012). The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids. JOURNAL OF MOLECULAR LIQUIDS, 166, 25–30. https://doi.org/10.1016/j.molliq.2011.11.008

Tuning DNA structure and compaction with gold nanoparticles. (2012). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057484/

Railsback, J. G., Singh, A., Pearce, R. C., McKnight, T. E., Collazo, R., Sitar, Z., … Melechko, A. V. (2012). Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation. ADVANCED MATERIALS, 24(31), 4261-+. https://doi.org/10.1002/adma.201104891

Yi, H., Singh, A., & Yingling, Y. G. (2012). X3DBio1: A Visual Analysis Tool for Biomolecular Structure Exploration (P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, R. Kosara, M. A. Livingston, … I. Roberts, Eds.). VISUALIZATION AND DATA ANALYSIS 2012, Vol. 8294. https://doi.org/10.1117/12.906893

Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.1029

Computational Prediction of Cellulose Synthase Protein Structure. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.1334

Singh, A., Sethaphong, L., & Yingling, Y. G. (2011). Interactions of Cations with RNA Loop-Loop Complexes. BIOPHYSICAL JOURNAL, 101(3), 727–735. https://doi.org/10.1016/j.bpj.2011.06.033

Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.635

Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.631

Nucleic acid helical conformation and sequence effects on cationic binding. (2011). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057504/

Singh, A., & Yingling, Y. G. (2011). Simulations of Stretching Single Stranded DNA. MRS Proceedings, 1301. https://doi.org/10.1557/opl.2011.569

Singh, A., Eksiri, H., & Yingling, Y. G. (2011, November 15). Theoretical Perspective on Properties of DNA-Functionalized Surfaces. JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS, Vol. 49, pp. 1563–1568. https://doi.org/10.1002/polb.22349

Cationic Sequence Dependence in Nucleic Acid Structures. (2010). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2009.12.244

Singh, A., Snyder, S., Lee, L., Johnston, A. P. R., Caruso, F., & Yingling, Y. G. (2010). Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films. LANGMUIR, 26(22), 17339–17347. https://doi.org/10.1021/la102762t

Singh, A., Sethaphong, L., & Yingling, Y. G. (2010). Molecular Dynamics and Distribution of Ions in Kissing Loop. Biophysical Journal, 98(3), 264a. https://doi.org/10.1016/j.bpj.2009.12.1439

Marlowe, A. E., & Yingling, Y. G. (2010). The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations. Biophysical Journal, 98(3), 568a. https://doi.org/10.1016/j.bpj.2009.12.3081

Sethaphong, L., Singh, A., Marlowe, A. E., & Yingling, Y. G. (2010). The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution. JOURNAL OF PHYSICAL CHEMISTRY C, 114(12), 5506–5512. https://doi.org/10.1021/jp906147q

Semichaevsky, A., Singh, A., & Yingling, Y. G. (2009). Computational Discovery Of The Electronegative Channel In RNA Loop-loop Interactions. Biophysical Journal, 96(3), 83a. https://doi.org/10.1016/J.BPJ.2008.12.334

Kasprzak, W. K., Yingling, Y. G., Simon, A. E., & Shapiro, B. A. (2009). Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV). Biophysical Journal, 96(3), 19a–20a. https://doi.org/10.1016/j.bpj.2008.12.1003

COMP 215-Explicit molecular dynamics simulations of kissing loop motif formed between TAR-RNA element of HIV-1 and aptamer. (2008). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057500/

Semichaevsky, A. V., Marlowe, A. E., & Yingling, Y. G. (2008). Comparing Ion Distributions around RNA and DNA Helical and Loop-loop Motifs. MRS Proceedings, 1130. https://doi.org/10.1557/proc-1130-w05-05

Shapiro, B. A., Bindewald, E., Kasprzak, W., & Yingling, Y. (2008). Protocols for the In Silico Design of RNA Nanostructures. In Methods in Molecular Biology™ (pp. 93–115). https://doi.org/10.1007/978-1-59745-480-3_7

McCormack, J. C., Yuan, X., Yingling, Y. G., Kasprzak, W., Zamora, R. E., Shapiro, B. A., & Simon, A. E. (2008). Structural Domains within the 3' Untranslated Region of Turnip Crinkle Virus. Journal of Virology, 82(17), 8706–8720. https://doi.org/10.1128/JVI.00416-08

Stupina, V. A., Meskauskas, A., McCormack, J. C., Yingling, Y. G., Shapiro, B. A., Dinman, J. D., & Simon, A. E. (2008). The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA, 14(11), 2379–2393. https://doi.org/10.1261/RNA.1227808

Shapiro, B. A., Yingling, Y. G., Kasprzak, W., & Bindewald, E. (2007). Bridging the gap in RNA structure prediction. Current Opinion in Structural Biology, 17(2), 157–165. https://doi.org/10.1016/j.sbi.2007.03.001

Yingling, Y. G., & Shapiro, B. A. (2007). Computational Design of an RNA Hexagonal Nanoring and an RNA Nanotube. Nano Letters, 7(8), 2328–2334. https://doi.org/10.1021/nl070984r

Prasad, M., Conforti, P. F., Garrison, B. J., & Yingling, Y. G. (2007). Computational investigation into the mechanisms of UV ablation of poly(methyl methacrylate). Applied Surface Science, 253(15), 6382–6385. https://doi.org/10.1016/j.apsusc.2007.01.054

Conforti, P. F., Yingling, Y. G., & Garrison, B. J. (2007). Computational studies of ultraviolet ablation of poly(methyl methacrylate). Journal of Physics: Conference Series, 59, 322–327. https://doi.org/10.1088/1742-6596/59/1/068

Yingling, Y. G., & Garrison, B. J. (2007). Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material. Applied Surface Science, 253(15), 6377–6381. https://doi.org/10.1016/j.apsusc.2007.01.100

Bindewald, E., Hayes, R., Yingling, Y. G., Kasprzak, W., & Shapiro, B. A. (2007). RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Research, 36(suppl_1), D392–D397. https://doi.org/10.1093/NAR/GKM842

Yingling, Y. G., & Shapiro, B. A. (2007). The Impact of Dyskeratosis Congenita Mutations on the Structure and Dynamics of the Human Telomerase RNA Pseudoknot Domain. Journal of Biomolecular Structure and Dynamics, 24(4), 303–319. https://doi.org/10.1080/07391102.2007.10531238

Theoretical investigation of formation and properties of RNA nanoparticles. (2007). Biophysical Journal. Retrieved from https://publons.com/publon/11561857/

Hastings, W. A., Yingling, Y. G., Chirikjian, G. S., & Shapiro, B. A. (2006). Structural and Dynamical Classification of RNA Single-Base Bulges for Nanostructure Design. Journal of Computational and Theoretical Nanoscience, 3(1), 63–77. https://doi.org/10.1166/jctn.2006.005

Structural and dynamical classification of RNA single-base bulges for nanostructure design. (2006). Journal of Computational and Theoretical Nanoscience. https://doi.org/10.1166/JCTN.2006.3049

Yingling, Y. G., & Shapiro, B. A. (2006). The Prediction of the Wild-type Telomerase RNA Pseudoknot Structure and the Pivotal Role of a Bulge in its Formation. Journal of Molecular Graphics and Modelling, 25(2), 261–274. https://doi.org/10.1016/j.jmgm.2006.01.003

Yingling, Y. G., & Garrison, B. J. (2005). Coarse-Grained Model of the Interaction of Light with Polymeric Material: Onset of Ablation. The Journal of Physical Chemistry B, 109(34), 16482–16489. https://doi.org/10.1021/jp0527711

Yingling, Y. G., & Shapiro, B. A. (2005). Dynamic Behavior of the Telomerase RNA Hairpin Structure and its Relationship to Dyskeratosis Congenita. Journal of Molecular Biology, 348(1), 27–42. https://doi.org/10.1016/j.jmb.2005.02.015

Yingling, Y. G., & Garrison, B. J. (2004). Coarse-Grained Chemical Reaction Model. The Journal of Physical Chemistry B, 108(6), 1815–1821. https://doi.org/10.1021/jp035730i

Yingling, Y. G., Conforti, P. F., & Garrison, B. J. (2004). Theoretical investigation of laser pulse width dependence in a thermal confinement regime. Applied Physics A, 79(4-6), 757–759. https://doi.org/10.1007/S00339-004-2575-4

Garrison, B. J., Delcorte, A., Zhigilei, L. V., Itina, T. E., Krantzman, K. D., Yingling, Y. G., … Winograd, N. (2003). Big molecule ejection—SIMS vs. MALDI. Applied Surface Science, 203-204, 69–71. https://doi.org/10.1016/S0169-4332(02)00661-X

Zhigilei, L. V., Leveugle, E., Garrison, B. J., Yingling, Y. G., & Zeifman, M. I. (2003). Computer Simulations of Laser Ablation of Molecular Substrates. ChemInform, 34(18). https://doi.org/10.1002/chin.200318285

Zhigilei, L. V., Leveugle, E., Garrison, B. J., Yingling, Y. G., & Zeifman, M. I. (2003). Computer Simulations of Laser Ablation of Molecular Substrates. Chemical Reviews, 103(2), 321–348. https://doi.org/10.1021/cr010459r

Zhigilei, L. V., Yingling, Y. G., Itina, T. E., Schoolcraft, T. A., & Garrison, B. J. (2003). Molecular dynamics simulations of matrix-assisted laser desorption - connections to experiment. International Journal of Mass Spectrometry, 226(1), 85–106. https://doi.org/10.1016/s1387-3806(02)00962-4

Yingling, Y. G., & Garrison, B. J. (2003). Photochemical ablation of organic solids. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 202, 188–194. https://doi.org/10.1016/s0168-583x(02)01855-4

Yingling, Y. G., & Garrison, B. J. (2002). Photochemical induced effects in material ejection in laser ablation. Chemical Physics Letters, 364(3-4), 237–243. https://doi.org/10.1016/s0009-2614(02)01327-1

Yingling, Y. G., Zhigilei, L. V., Garrison, B. J., Koubenakis, A., Labrakis, J., & Georgiou, S. (2001). Laser ablation of bicomponent systems: A probe of molecular ejection mechanisms. Applied Physics Letters, 78(11), 1631–1633. https://doi.org/10.1063/1.1353816

Yingling, Y. G., Zhigilei, L. V., & Garrison, B. J. (2001). Photochemical fragmentation processes in laser ablation of organic solids. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 180(1-4), 171–175. https://doi.org/10.1016/s0168-583x(01)00414-1

Yingling, Y. G., Zhigilei, L. V., & Garrison, B. J. (2001). The role of the photochemical fragmentation in laser ablation: a molecular dynamics study. Journal of Photochemistry and Photobiology A: Chemistry, 145(3), 173–181. https://doi.org/10.1016/s1010-6030(01)00580-9

New polyvalent RNA nanoparticle comprises RNA motifs as building blocks, useful in a drug delivery composition for treating or preventing a disease or disorder, e.g. AIDS, Alzheimer's disease, anemia, cancer, hypertension, or obesity. Retrieved from https://publons.com/publon/15543588/

New polyvalent RNA nanoparticle, useful for treating or preventing a disease or disorder, e.g. adenoma, aging, AIDS, alopecia, Alzheimer's disease, or anemia. Retrieved from https://publons.com/publon/15543587/