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Plant Cell, 28(1), 202–218. https://doi.org/10.1105/tpc.15.00625 Lei, L., Singh, A., Bashline, L., Li, S., Yingling, Y. G., & Gu, Y. (2015). CELLULOSE SYNTHASE INTERACTIVE1 Is Required for Fast Recycling of Cellulose Synthase Complexes to the Plasma Membrane in Arabidopsis. The Plant Cell, 27(10), tpc.15.00442. https://doi.org/10.1105/tpc.15.00442 Nash, J. A., Singh, A., Li, N. K., & Yingling, Y. G. (2015, November 2). Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics. ACS Nano, Vol. 9, pp. 12374–12382. https://doi.org/10.1021/acsnano.5b05684 Li, N. K., Fuss, W. H., & Yingling, Y. G. (2015). Cover Picture: Macromol. Theory Simul. 1∕2015. Macromolecular Theory and Simulations, 24(1), 1–1. https://doi.org/10.1002/mats.201570001 Effect of NP shape and ligand flexibility in the design of nucleic acid wrapping NPs. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/wos-op/publon/28057470/ Effect of surface polarity on physisorption of biomolecules: Molecular modeling. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057471/ Peerless, J. S., Bowers, G. H., Kwansa, A. L., & Yingling, Y. G. (2015, November 11). Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility. The Journal of Physical Chemistry B, Vol. 119, pp. 15344–15352. https://doi.org/10.1021/acs.jpcb.5b09386 Gold nanoparticle-nucleic acid modeling using GPU-accelerated molecular dynamics. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057466/ Yang, H., Zimmer, J., Yingling, Y. G., & Kubicki, J. D. (2015, May 5). How Cellulose Elongates—A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA. The Journal of Physical Chemistry B, Vol. 119, pp. 6525–6535. https://doi.org/10.1021/acs.jpcb.5b01433 Zhao, B., Li, N. K., Yingling, Y. G., & Hall, C. K. (2015, November 23). LCST Behavior is Manifested in a Single Molecule: Elastin-Like polypeptide (VPGVG)n. Biomacromolecules, Vol. 17, pp. 111–118. https://doi.org/10.1021/acs.biomac.5b01235 Li, S., Lei, L., Yingling, Y. G., & Gu, Y. (2015, October 25). Microtubules and cellulose biosynthesis: the emergence of new players. Current Opinion in Plant Biology, Vol. 28, pp. 76–82. https://doi.org/10.1016/j.pbi.2015.09.002 Molecular description of LCST behavior of elastin-like peptides poly(VPGVG) and poly(VGPVG). (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057468/ Morphological and rheological properties of aqueous micellar network of polyelectrolyte block copolymers. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057469/ Li, N. K., Fuss, W. H., Tang, L., Gu, R., Chilkoti, A., Zauscher, S., & Yingling, Y. G. (2015, January 1). Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles. Soft Matter, Vol. 11, pp. 8236–8245. https://doi.org/10.1039/c5sm01742d Sethaphong, L., Davis, J. K., Slabaugh, E., Singh, A., Haigler, C. H., & Yingling, Y. G. (2016). Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis. Cellulose, 23(1), 145–161. https://doi.org/10.1007/s10570-015-0789-6 Simulations of the self-assembly of polyelectrolyte block copolymers using dissipative particle dynamics with an implicit solvent ionic strength (ISIS) method. (2015). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057467/ Li, N. K., Fuss, W. H., & Yingling, Y. G. (2014, August 14). An Implicit Solvent Ionic Strength (ISIS) Method to Model Polyelectrolyte Systems with Dissipative Particle Dynamics. Macromolecular Theory and Simulations, Vol. 24, pp. 7–12. https://doi.org/10.1002/mats.201400043 Slabaugh, E., Sethaphong, L., Xiao, C., Amick, J., Anderson, C. T., Haigler, C. H., & Yingling, Y. G. (2014). Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase. Journal of Experimental Botany, 65(22), 6645–6653. https://doi.org/10.1093/jxb/eru383 Tang, L., Tjong, V., Li, N., Yingling, Y. G., Chilkoti, A., & Zauscher, S. (2014, February 3). Enzymatic Polymerization of High Molecular Weight DNA Amphiphiles That Self‐Assemble into Star‐Like Micelles. Advanced Materials, Vol. 2, p. n/a–n/a. https://doi.org/10.1002/adma.201306049 Li, N. K., Quiroz, F. G., Hall, C. K., Chilkoti, A., & Yingling, Y. G. (2014, August 21). Molecular Description of the LCST Behavior of an Elastin-Like Polypeptide. Biomacromolecules, Vol. 15, pp. 3522–3530. https://doi.org/10.1021/bm500658w Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface. (2014). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2013.11.1626 Li, N. K., Kim, H. S., Nash, J. A., Lim, M., & Yingling, Y. G. (2014, May 23). Progress in molecular modelling of DNA materials. Molecular Simulation, Vol. 5, pp. 1–7. https://doi.org/10.1080/08927022.2014.913792 Slabaugh, E., Davis, J. K., Haigler, C. H., Yingling, Y. G., & Zimmer, J. (2014). Cellulose synthases: new insights from crystallography and modeling. Trends in Plant Science, 19(2), 99–106. https://doi.org/10.1016/j.tplants.2013.09.009 Pani, R. C., Bond, B. D., Krishnan, G., & Yingling, Y. G. (2013, January 1). Correlating fullerene diffusion with the polythiophene morphology: molecular dynamics simulations. Soft Matter, Vol. 9, p. 10048. https://doi.org/10.1039/c3sm51906f Modeling polymer/biopolymer and nanoparticle interactions: Prediction of materials morphology. (2013). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057478/ Sethaphong, L., Haigler, C. H., Kubicki, J. D., Zimmer, J., Bonetta, D., DeBolt, S., & Yingling, Y. G. (2013). Tertiary model of a plant cellulose synthase. Proceedings of the National Academy of Sciences, 110(18), 7512–7517. https://doi.org/10.1073/pnas.1301027110 Kim, H. S., Ha, S. H., Sethaphong, L., Koo, Y.-M., & Yingling, Y. G. (2013, December 2). The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study. Physical Chemistry Chemical Physics, Vol. 16, p. 2944. https://doi.org/10.1039/c3cp52516c Singh, A., Li, N., & Yingling, Y. G. (2013). Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations. Biophysical Journal, 104(2), 29a. https://doi.org/10.1016/j.bpj.2012.11.196 Yi, H., Thakur, S., Sethaphong, L., & Yingling, Y. G. (2013). X3DBio2: A visual analysis tool for biomolecular structure comparison. In P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, & C. G. Healey (Eds.), Visualization and Data Analysis 2013 (Vol. 2, p. 86540W). https://doi.org/10.1117/12.2002626 Effect of solvent on the interfacial properties between functionalized nanoparticles and polymers. (2012). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/wos-op/publon/28057488/ Railsback, J. G., Singh, A., Pearce, R. C., McKnight, T. E., Collazo, R., Sitar, Z., … Melechko, A. V. (2012). Gold Nanoparticles: Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation (Adv. Mater. 31/2012). Advanced Materials, 24(31), 4221–4221. https://doi.org/10.1002/adma.201290188 Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity. (2012). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2011.11.3474 Pasquinelli, M. A., & Yingling, Y. G. (2012). Molecular dynamics simulations of nano-bio materials. In B. Bhushan (Ed.), Encyclopedia of Nanotechnology (pp. 1454–1463). https://doi.org/10.1007/978-90-481-9751-4_402 Pani, R. C., & Yingling, Y. G. (2012, June 14). Role of Solvent and Dendritic Architecture on the Redox Core Encapsulation. The Journal of Physical Chemistry A, Vol. 116, p. 7593–7599. https://doi.org/10.1021/jp304253g Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations. (2012). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2011.11.1379 Marlowe, A. E., Singh, A., & Yingling, Y. G. (2012, August 2). The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study. Materials Science and Engineering C, Vol. 32, p. 2583–2588. https://doi.org/10.1016/j.msec.2012.07.044 Railsback, J. G., Singh, A., Pearce, R. C., McKnight, T. E., Collazo, R., Sitar, Z., … Melechko, A. V. (2012, June 19). Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation. Advanced Materials, Vol. 24, p. 4261–4265. https://doi.org/10.1002/adma.201104891 Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.1029 Computational Prediction of Cellulose Synthase Protein Structure. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.1334 Singh, A., Sethaphong, L., & Yingling, Y. G. (2011, August 1). Interactions of Cations with RNA Loop-Loop Complexes. Biophysical Journal, Vol. 101, p. 727–735. https://doi.org/10.1016/j.bpj.2011.06.033 Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.635 Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding. (2011). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2010.12.631 Nucleic acid helical conformation and sequence effects on cationic binding. (2011). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/publon/28057504/ Singh, A., & Yingling, Y. G. (2011). Simulations of Stretching Single Stranded DNA. MRS Proceedings, 1301. https://doi.org/10.1557/opl.2011.569 Kim, H. S., Pani, R., Ha, S. H., Koo, Y.-M., & Yingling, Y. G. (2011, December 2). The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids. Journal of Molecular Liquids, Vol. 166, p. 25–30. https://doi.org/10.1016/j.molliq.2011.11.008 Singh, A., Eksiri, H., & Yingling, Y. G. (2011, August 31). Theoretical perspective on properties of DNA‐functionalized surfaces. Journal of Polymer Science Part B Polymer Physics, Vol. 49, p. 1563–1568. https://doi.org/10.1002/polb.22349 Yi, H., Singh, A., & Yingling, Y. G. (2011, December 1). X3DBio1: a visual analysis tool for biomolecular structure exploration (P. C. Wong, D. L. Kao, M. C. Hao, C. Chen, R. Kosara, M. A. Livingston, … I. Roberts, Eds.). Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE, Vol. 1, p. 8294OS. https://doi.org/10.1117/12.906893 Cationic Sequence Dependence in Nucleic Acid Structures. (2010). Biophysical Journal. https://doi.org/10.1016/J.BPJ.2009.12.244 Singh, A., Snyder, S., Lee, L., Johnston, A. P. R., Caruso, F., & Yingling, Y. G. (2010, October 12). Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films. Langmuir, Vol. 26, p. 17339–17347. https://doi.org/10.1021/la102762t Singh, A., Sethaphong, L., & Yingling, Y. G. (2010). Molecular Dynamics and Distribution of Ions in Kissing Loop. Biophysical Journal, 98(3), 264a. https://doi.org/10.1016/j.bpj.2009.12.1439 Marlowe, A. E., & Yingling, Y. G. (2010). The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations. Biophysical Journal, 98(3), 568a. https://doi.org/10.1016/j.bpj.2009.12.3081 Sethaphong, L., Singh, A., Marlowe, A. E., & Yingling, Y. G. (2010, January 14). The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution. The Journal of Physical Chemistry C, Vol. 114, p. 5506–5512. https://doi.org/10.1021/jp906147q Semichaevsky, A., Singh, A., & Yingling, Y. G. (2009). Computational Discovery Of The Electronegative Channel In RNA Loop-loop Interactions. Biophysical Journal, 96(3), 83a. https://doi.org/10.1016/J.BPJ.2008.12.334 Kasprzak, W. K., Yingling, Y. G., Simon, A. E., & Shapiro, B. A. (2009). Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV). Biophysical Journal, 96(3), 19a–20a. https://doi.org/10.1016/j.bpj.2008.12.1003 COMP 215-Explicit molecular dynamics simulations of kissing loop motif formed between TAR-RNA element of HIV-1 and aptamer. (2008). Abstracts of Papers of the American Chemical Society. Retrieved from https://publons.com/wos-op/publon/28057500/ Semichaevsky, A. V., Marlowe, A. E., & Yingling, Y. G. (2008). Comparing Ion Distributions around RNA and DNA Helical and Loop-loop Motifs. MRS Proceedings, 1130. https://doi.org/10.1557/proc-1130-w05-05 Shapiro, B. A., Bindewald, E., Kasprzak, W., & Yingling, Y. (2008). Protocols for the In Silico Design of RNA Nanostructures. In Methods in Molecular Biology™ (pp. 93–115). https://doi.org/10.1007/978-1-59745-480-3_7 McCormack, J. C., Yuan, X., Yingling, Y. G., Kasprzak, W., Zamora, R. E., Shapiro, B. A., & Simon, A. E. (2008). Structural Domains within the 3' Untranslated Region of Turnip Crinkle Virus. Journal of Virology, 82(17), 8706–8720. https://doi.org/10.1128/JVI.00416-08 Stupina, V. A., Meskauskas, A., McCormack, J. C., Yingling, Y. G., Shapiro, B. A., Dinman, J. D., & Simon, A. E. (2008). The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA, 14(11), 2379–2393. https://doi.org/10.1261/RNA.1227808 Shapiro, B. A., Yingling, Y. G., Kasprzak, W., & Bindewald, E. (2007). Bridging the gap in RNA structure prediction. Current Opinion in Structural Biology, 17(2), 157–165. https://doi.org/10.1016/j.sbi.2007.03.001 Yingling, Y. G., & Shapiro, B. A. (2007). Computational Design of an RNA Hexagonal Nanoring and an RNA Nanotube. Nano Letters, 7(8), 2328–2334. https://doi.org/10.1021/nl070984r Prasad, M., Conforti, P. F., Garrison, B. J., & Yingling, Y. G. (2007). Computational investigation into the mechanisms of UV ablation of poly(methyl methacrylate). Applied Surface Science, 253(15), 6382–6385. https://doi.org/10.1016/j.apsusc.2007.01.054 Conforti, P. F., Yingling, Y. G., & Garrison, B. J. (2007). Computational studies of ultraviolet ablation of poly(methyl methacrylate). Journal of Physics: Conference Series, 59, 322–327. https://doi.org/10.1088/1742-6596/59/1/068 Yingling, Y. G., & Garrison, B. J. (2007). Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material. Applied Surface Science, 253(15), 6377–6381. https://doi.org/10.1016/j.apsusc.2007.01.100 Bindewald, E., Hayes, R., Yingling, Y. G., Kasprzak, W., & Shapiro, B. A. (2007). RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Research, 36(suppl_1), D392–D397. https://doi.org/10.1093/NAR/GKM842 Yingling, Y. G., & Shapiro, B. A. (2007). The Impact of Dyskeratosis Congenita Mutations on the Structure and Dynamics of the Human Telomerase RNA Pseudoknot Domain. Journal of Biomolecular Structure and Dynamics, 24(4), 303–319. https://doi.org/10.1080/07391102.2007.10531238 Theoretical investigation of formation and properties of RNA nanoparticles. (2007). Biophysical Journal. Retrieved from https://publons.com/publon/11561857/ Structural and dynamical classification of RNA single-base bulges for nanostructure design. (2006). Journal of Computational and Theoretical Nanoscience. https://doi.org/10.1166/JCTN.2006.3049 Hastings, W. A., Yingling, Y. G., Chirikjian, G. S., & Shapiro, B. A. (2006). Structural and Dynamical Classification of RNA Single-Base Bulges for Nanostructure Design. Journal of Computational and Theoretical Nanoscience, 3(1), 63–77. https://doi.org/10.1166/jctn.2006.005 Yingling, Y. G., & Shapiro, B. A. (2006). The Prediction of the Wild-type Telomerase RNA Pseudoknot Structure and the Pivotal Role of a Bulge in its Formation. Journal of Molecular Graphics and Modelling, 25(2), 261–274. https://doi.org/10.1016/j.jmgm.2006.01.003 Yingling, Y. G., & Garrison, B. J. (2005). Coarse-Grained Model of the Interaction of Light with Polymeric Material: Onset of Ablation. The Journal of Physical Chemistry B, 109(34), 16482–16489. https://doi.org/10.1021/jp0527711 Yingling, Y. G., & Shapiro, B. A. (2005). Dynamic Behavior of the Telomerase RNA Hairpin Structure and its Relationship to Dyskeratosis Congenita. Journal of Molecular Biology, 348(1), 27–42. https://doi.org/10.1016/j.jmb.2005.02.015 Yingling, Y. G., & Garrison, B. J. (2004). Coarse-Grained Chemical Reaction Model. The Journal of Physical Chemistry B, 108(6), 1815–1821. https://doi.org/10.1021/jp035730i Yingling, Y. G., Conforti, P. F., & Garrison, B. J. (2004). Theoretical investigation of laser pulse width dependence in a thermal confinement regime. Applied Physics A, 79(4-6), 757–759. https://doi.org/10.1007/S00339-004-2575-4 Zhigilei, L. V., Leveugle, E., Garrison, B. J., Yingling, Y. G., & Zeifman, M. I. (2003). Computer Simulations of Laser Ablation of Molecular Substrates. ChemInform, 34(18). https://doi.org/10.1002/chin.200318285 Zhigilei, L. V., Leveugle, E., Garrison, B. J., Yingling, Y. G., & Zeifman, M. I. (2003). Computer Simulations of Laser Ablation of Molecular Substrates. Chemical Reviews, 103(2), 321–348. https://doi.org/10.1021/cr010459r Zhigilei, L. V., Yingling, Y. G., Itina, T. E., Schoolcraft, T. A., & Garrison, B. J. (2003). Molecular dynamics simulations of matrix-assisted laser desorption - connections to experiment. International Journal of Mass Spectrometry, 226(1), 85–106. https://doi.org/10.1016/s1387-3806(02)00962-4 Yingling, Y. G., & Garrison, B. J. (2003). Photochemical ablation of organic solids. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 202, 188–194. https://doi.org/10.1016/s0168-583x(02)01855-4 Garrison, B. J., Delcorte, A., Zhigilei, L. V., Itina, T. E., Krantzman, K. D., Yingling, Y. G., … Winograd, N. (2003). Big molecule ejection—SIMS vs. MALDI. Applied Surface Science, 203-204, 69–71. https://doi.org/10.1016/S0169-4332(02)00661-X Yingling, Y. G., & Garrison, B. J. (2002). Photochemical induced effects in material ejection in laser ablation. Chemical Physics Letters, 364(3-4), 237–243. https://doi.org/10.1016/s0009-2614(02)01327-1 Yingling, Y. G., Zhigilei, L. V., Garrison, B. J., Koubenakis, A., Labrakis, J., & Georgiou, S. (2001). Laser ablation of bicomponent systems: A probe of molecular ejection mechanisms. Applied Physics Letters, 78(11), 1631–1633. https://doi.org/10.1063/1.1353816 Yingling, Y. G., Zhigilei, L. V., & Garrison, B. J. (2001). Photochemical fragmentation processes in laser ablation of organic solids. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 180(1-4), 171–175. https://doi.org/10.1016/s0168-583x(01)00414-1 Yingling, Y. G., Zhigilei, L. V., & Garrison, B. J. (2001). The role of the photochemical fragmentation in laser ablation: a molecular dynamics study. Journal of Photochemistry and Photobiology A: Chemistry, 145(3), 173–181. https://doi.org/10.1016/s1010-6030(01)00580-9 New polyvalent RNA nanoparticle comprises RNA motifs as building blocks, useful in a drug delivery composition for treating or preventing a disease or disorder, e.g. AIDS, Alzheimer's disease, anemia, cancer, hypertension, or obesity. Retrieved from https://publons.com/publon/15543588/ New polyvalent RNA nanoparticle, useful for treating or preventing a disease or disorder, e.g. adenoma, aging, AIDS, alopecia, Alzheimer's disease, or anemia. Retrieved from https://publons.com/publon/15543587/