Yue Hao

Works (8)

Updated: January 22nd, 2024 08:12

2021 article

Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa

Qi, X., An, H., Hall, T. E., Di, C., Blischak, P. D., McKibben, M. T. W., … Barker, M. S. (2021, January 16). New Phytologist, Vol. 230, pp. 372–386.

By: X. Qi*, H. An *, T. Hall*, C. Di *, P. Blischak *, M. McKibben *, Y. Hao n, G. Conant n , J. Pires *, M. Barker *

author keywords: Brassica; domestication; genetic diversity; genomics; polyploidy; whole genome duplication
MeSH headings : Brassica rapa / genetics; Domestication; Genome, Plant / genetics; Phylogeny; Polyploidy
topics (OpenAlex): Chromosomal and Genetic Variations; Genomics and Phylogenetic Studies; Nitrogen and Sulfur Effects on Brassica
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 22, 2021

2021 article

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

Hao, Y., Mabry, M. E., Edger, P. P., Freeling, M., Zheng, C., Jin, L., … Conant, G. C. (2021, April 16). Genome Research, Vol. 5.

By: Y. Hao n, M. Mabry *, P. Edger *, M. Freeling *, C. Zheng *, L. Jin *, R. VanBuren *, M. Colle * ...

MeSH headings : Evolution, Molecular; Genome; Genome, Plant; Humans; Hybridization, Genetic; Phylogeny; Polyploidy
topics (OpenAlex): Chromosomal and Genetic Variations; Genomics and Phylogenetic Studies; Plant Disease Resistance and Genetics
TL;DR: A “mix and match” model of allopolyploidy is proposed, in which subgenome origin drives homoeolog loss propensities but where genes from different subgenomes function together without difficulty. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 10, 2021

2020 article

Baby Genomics: Tracing the Evolutionary Changes That Gave Rise to Placentation

Hao, Y., Lee, H. J., Baraboo, M., Burch, K., Maurer, T., Somarelli, J. A., & Conant, G. C. (2020, February 5). Genome Biology and Evolution, Vol. 12, pp. 35–47.

By: Y. Hao n, H. Lee *, M. Baraboo*, K. Burch*, T. Maurer *, J. Somarelli *, G. Conant n 

author keywords: comparative genomics; orthology inference; mammalian pregnancy; placental mammals
MeSH headings : Animals; Evolution, Molecular; Female; Gene Expression Regulation; Genomics; Humans; Immunity, Innate / genetics; Mammals / genetics; Placentation / genetics; Pregnancy; Transcription, Genetic
topics (OpenAlex): Prenatal Screening and Diagnostics; Birth, Development, and Health; Epigenetics and DNA Methylation; Cancer-related molecular mechanisms research; RNA modifications and cancer
TL;DR: It is found that genes that are phylogenetically older are more likely to be implicated in cancer development, and much of the genetic toolkit of mammalian pregnancy evolved through the repurposing of preexisting genes to new roles. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: June 15, 2020

2019 article

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

Schoonmaker, A., Hao, Y., Bird, D. M. K., & Conant, G. C. (2019, November 7). G3 Genes Genomes Genetics, Vol. 10, pp. 225–233.

By: A. Schoonmaker*, Y. Hao*, D. Bird*  & G. Conant n 

Contributors: A. Schoonmaker*, Y. Hao*, D. Bird*  & G. Conant n 

author keywords: polyploidy; evolutionary model; root-knot nematode
MeSH headings : Animals; Evolution, Molecular; Genome, Helminth; Phylogeny; Triploidy; Tylenchoidea / classification; Tylenchoidea / genetics
topics (OpenAlex): Nematode management and characterization studies; Legume Nitrogen Fixing Symbiosis; Chromosomal and Genetic Variations
TL;DR: Three root-knot nematodes of the genus Meloidogyne descend from a single common hybridization event that yielded triplicated genomes with three distinguishable subgenomes, and ancestral loci where two of the three gene copies have been lost are less likely to have orthologs in Caenorhabditis elegans that are lethal when knocked down than are ancestral locu with surviving duplicate copies. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: January 21, 2020

2019 article

Functional characterization of SMN evolution in mouse models of SMA

Osman, E. Y., Bolding, M. R., Villalón, E., Kaifer, K. A., Lorson, Z. C., Tisdale, S., … Lorson, C. L. (2019, July 1). Scientific Reports, Vol. 9.

By: E. Osman *, M. Bolding *, E. Villalón *, K. Kaifer*, Z. Lorson *, S. Tisdale*, Y. Hao n, G. Conant n  ...

MeSH headings : Animals; Caenorhabditis elegans; Disease Models, Animal; Drosophila melanogaster; Evolution, Molecular; Mice; Mice, Knockout; Muscular Atrophy, Spinal / genetics; Muscular Atrophy, Spinal / metabolism; Schizosaccharomyces; Survival of Motor Neuron 1 Protein / genetics; Survival of Motor Neuron 1 Protein / metabolism; Xenopus Proteins / genetics; Xenopus Proteins / metabolism; Xenopus laevis; Zebrafish / genetics; Zebrafish Proteins / genetics; Zebrafish Proteins / metabolism
topics (OpenAlex): Neurogenetic and Muscular Disorders Research; RNA modifications and cancer; Muscle Physiology and Disorders
TL;DR: A minimal SMN construct was designed consisting of exons 2, 3, and 6, which showed a partial rescue of the SMA phenotype, which suggests that while the core conserved region is essential, additional sequences contribute to the overall ability of the SMN protein to rescue disease pathology. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries
Added: July 22, 2019

2019 article

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

An, H., Qi, X., Gaynor, M. L., Hao, Y., Gebken, S. C., Mabry, M. E., … Pires, J. C. (2019, June 28). Nature Communications, Vol. 10.

By: H. An *, X. Qi*, M. Gaynor *, Y. Hao n, S. Gebken*, M. Mabry *, A. McAlvay *, G. Teakle * ...

MeSH headings : Brassica napus / genetics; Brassica napus / metabolism; Gene Expression Regulation, Plant; Genomics; Organelles; Phylogeny; Plant Leaves / growth & development; Plant Tubers; Ploidies; Polymorphism, Single Nucleotide; RNA, Plant / genetics; Sequence Analysis, RNA; Transcriptome
topics (OpenAlex): Genomics and Phylogenetic Studies; Chromosomal and Genetic Variations; Plant Disease Resistance and Genetics
TL;DR: The authors show the complex origin and diversification of Brassica napus by analyzing transcriptome and organellar sequencing data and discern regions with signatures of selective sweeps and detect 8,187 differentially expressed genes with implications for B. napus diversification. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: July 22, 2019

2018 article

Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived

Hao, Y., Washburn, J. D., Rosenthal, J., Nielsen, B., Lyons, E., Edger, P. P., … Conant, G. C. (2018, March 1). Genome Biology and Evolution, Vol. 10, pp. 999–1011.

By: Y. Hao n, J. Washburn *, J. Rosenthal *, B. Nielsen*, E. Lyons *, P. Edger *, J. Pires *, G. Conant n 

author keywords: whole genome duplication; Arabidopsis thaliana; Brassica; dosage balance; metabolic network
MeSH headings : Arabidopsis / genetics; Brassica / genetics; Evolution, Molecular; Gene Dosage / genetics; Gene Duplication; Genes, Plant / genetics; Genome, Plant / genetics; Phylogeny; Polyploidy; Selection, Genetic / genetics
topics (OpenAlex): Chromosomal and Genetic Variations; Plant Reproductive Biology; Plant Pathogens and Resistance; Genomics and Phylogenetic Studies; Genetic diversity and population structure
TL;DR: The results paint a picture of the long-lived effects of polyploidy on plant genomes, suggesting that even yesterday’s polyploids still have distinct evolutionary trajectories. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2018 article

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

Emery, M., Willis, M. M. S., Hao, Y., Barry, K., Oakgrove, K., Peng, Y., … Conant, G. C. (2018, March 28). PLoS Genetics, Vol. 14.

By: M. Emery*, M. Willis*, Y. Hao n, K. Barry *, K. Oakgrove*, Y. Peng *, J. Schmutz *, E. Lyons * ...

MeSH headings : Brassicaceae / genetics; Evolution, Molecular; Genes, Plant; Genomic Imprinting; Hybridization, Genetic; Models, Genetic; Polyploidy
topics (OpenAlex): Chromosomal and Genetic Variations; Plant Disease Resistance and Genetics; Genetic Mapping and Diversity in Plants and Animals
TL;DR: It is suggested that, after allopolyploidy, there are functional conflicts between interacting genes encoded in different subgenomes that are ultimately resolved through preferential duplicate loss. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

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